John L. Rubinstein - Publications

Affiliations: 
Biochemistry University of Toronto, Toronto, ON, Canada 
Area:
Biochemistry

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL. Structural comparison of the vacuolar and Golgi V-ATPases from . Proceedings of the National Academy of Sciences of the United States of America. PMID 30910982 DOI: 10.1073/pnas.1814818116  1
2018 Wiseman B, Nitharwal RG, Fedotovskaya O, Schäfer J, Guo H, Kuang Q, Benlekbir S, Sjöstrand D, Ädelroth P, Rubinstein JL, Brzezinski P, Högbom M. Structure of a functional obligate complex IIIIV respiratory supercomplex from Mycobacterium smegmatis. Nature Structural & Molecular Biology. 25: 1128-1136. PMID 30518849 DOI: 10.1038/s41594-018-0160-3  1
2018 Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB. Structure of the alternative complex III in a supercomplex with cytochrome oxidase. Nature. PMID 29695868 DOI: 10.1038/s41586-018-0061-y  1
2017 Guo H, Bueler SA, Rubinstein JL. Atomic model for the dimeric FO region of mitochondrial ATP synthase. Science (New York, N.Y.). PMID 29074581 DOI: 10.1126/science.aao4815  1
2017 Zhao J, Beyrakhova K, Liu Y, Alvarez CP, Bueler SA, Xu L, Xu C, Boniecki MT, Kanelis V, Luo ZQ, Cygler M, Rubinstein JL. Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein. Plos Pathogens. 13: e1006394. PMID 28570695 DOI: 10.1371/journal.ppat.1006394  1
2016 Mazhab-Jafari MT, Rohou A, Schmidt C, Bueler SA, Benlekbir S, Robinson CV, Rubinstein JL. Atomic model for the membrane-embedded VO motor of a eukaryotic V-ATPase. Nature. 1-5. PMID 27776355 DOI: 10.1038/nature19828  0.64
2016 Koo J, Lamers RP, Rubinstein JL, Burrows LL, Howell PL. Structure of the Pseudomonas aeruginosa Type IVa Pilus Secretin at 7.4 Å. Structure (London, England : 1993). 24: 1778-1787. PMID 27705815 DOI: 10.1016/j.str.2016.08.007  1
2016 Mazhab-Jafari MT, Rubinstein JL. Cryo-EM studies of the structure and dynamics of vacuolar-type ATPases. Science Advances. 2: e1600725. PMID 27532044 DOI: 10.1126/sciadv.1600725  1
2016 Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JL, Britton RA, Williamson JR, Ortega J. YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit. Nucleic Acids Research. PMID 27484475 DOI: 10.1093/nar/gkw678  1
2016 Wilson MD, Benlekbir S, Fradet-Turcotte A, Sherker A, Julien JP, McEwan A, Noordermeer SM, Sicheri F, Rubinstein JL, Durocher D. The structural basis of modified nucleosome recognition by 53BP1. Nature. PMID 27462807 DOI: 10.1038/nature18951  1
2016 Huang R, Ripstein ZA, Augustyniak R, Lazniewski M, Ginalski K, Kay LE, Rubinstein JL. Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study. Proceedings of the National Academy of Sciences of the United States of America. PMID 27402735 DOI: 10.1073/pnas.1603980113  1
2016 Schep DG, Zhao J, Rubinstein JL. Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance. Proceedings of the National Academy of Sciences of the United States of America. PMID 26951669 DOI: 10.1073/pnas.1521990113  0.64
2016 Ji AX, Chu A, Nielsen TK, Benlekbir S, Rubinstein JL, Privé GG. Structural Insights into KCTD Protein Assembly and Cullin3 Recognition. Journal of Molecular Biology. 428: 92-107. PMID 26334369 DOI: 10.1016/j.jmb.2015.08.019  1
2016 Ripstein ZA, Rubinstein JL. Processing of Cryo-EM Movie Data Methods in Enzymology. DOI: 10.1016/bs.mie.2016.04.009  1
2015 Rosenthal PB, Rubinstein JL. Validating maps from single particle electron cryomicroscopy. Current Opinion in Structural Biology. 34: 135-44. PMID 26605834 DOI: 10.1016/j.sbi.2015.07.002  1
2015 Zhou A, Rohou A, Schep DG, Bason JV, Montgomery MG, Walker JE, Grigorieff N, Rubinstein JL. Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM. Elife. 4. PMID 26439008 DOI: 10.7554/eLife.10180  0.64
2015 Pimentel-Elardo SM, Sørensen D, Ho L, Ziko M, Bueler SA, Lu S, Tao J, Moser A, Lee R, Agard D, Fairn G, Rubinstein JL, Shoichet BK, Nodwell JR. Activity-Independent Discovery of Secondary Metabolites Using Chemical Elicitation and Cheminformatic Inference. Acs Chemical Biology. PMID 26352211 DOI: 10.1021/acschembio.5b00612  1
2015 Rubinstein JL, Brubaker MA. Alignment of cryo-EM movies of individual particles by optimization of image translations. Journal of Structural Biology. 192: 188-95. PMID 26296328 DOI: 10.1016/j.jsb.2015.08.007  1
2015 Zhao J, Brubaker MA, Benlekbir S, Rubinstein JL. Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images. Journal of Structural Biology. 192: 209-15. PMID 26087140 DOI: 10.1016/j.jsb.2015.06.014  1
2015 Zhao J, Benlekbir S, Rubinstein JL. Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase. Nature. 521: 241-5. PMID 25971514 DOI: 10.1038/nature14365  1
2015 Bueler SA, Rubinstein JL. Vma9p need not be associated with the yeast V-ATPase for fully-coupled proton pumping activity in vitro. Biochemistry. 54: 853-8. PMID 25546637 DOI: 10.1021/bi5013172  1
2014 Zhao J, Rubinstein JL. The study of vacuolar-type ATPases by single particle electron microscopy. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 92: 460-6. PMID 25350640 DOI: 10.1139/bcb-2014-0086  1
2014 Smith MT, Rubinstein JL. Structural biology. Beyond blob-ology. Science (New York, N.Y.). 345: 617-9. PMID 25104368 DOI: 10.1126/science.1256358  1
2014 Langlois R, Pallesen J, Ash JT, Nam Ho D, Rubinstein JL, Frank J. Automated particle picking for low-contrast macromolecules in cryo-electron microscopy. Journal of Structural Biology. 186: 1-7. PMID 24607413 DOI: 10.1016/j.jsb.2014.03.001  1
2014 Zhao J, Rubinstein JL. Enzyme mechanisms: Flexibility leads to function. Nature Chemistry. 6: 170-1. PMID 24557126 DOI: 10.1038/nchem.1879  1
2014 Marshansky V, Rubinstein JL, Grüber G. Eukaryotic V-ATPase: novel structural findings and functional insights. Biochimica Et Biophysica Acta. 1837: 857-79. PMID 24508215 DOI: 10.1016/j.bbabio.2014.01.018  1
2014 Marr CR, Benlekbir S, Rubinstein JL. Fabrication of carbon films with ∼ 500nm holes for cryo-EM with a direct detector device. Journal of Structural Biology. 185: 42-7. PMID 24269484 DOI: 10.1016/j.jsb.2013.11.002  1
2013 Ishiyama N, Tanaka N, Abe K, Yang YJ, Abbas YM, Umitsu M, Nagar B, Bueler SA, Rubinstein JL, Takeichi M, Ikura M. An autoinhibited structure of α-catenin and its implications for vinculin recruitment to adherens junctions. The Journal of Biological Chemistry. 288: 15913-25. PMID 23589308 DOI: 10.1074/jbc.M113.453928  1
2013 Zhao J, Brubaker MA, Rubinstein JL. TMaCS: a hybrid template matching and classification system for partially-automated particle selection. Journal of Structural Biology. 181: 234-42. PMID 23333657 DOI: 10.1016/j.jsb.2012.12.010  1
2013 Hosokawa H, Dip PV, Merkulova M, Bakulina A, Zhuang Z, Khatri A, Jian X, Keating SM, Bueler SA, Rubinstein JL, Randazzo PA, Ausiello DA, Grüber G, Marshansky V. The N termini of a-subunit isoforms are involved in signaling between vacuolar H+-ATPase (V-ATPase) and cytohesin-2. The Journal of Biological Chemistry. 288: 5896-913. PMID 23288846 DOI: 10.1074/jbc.M112.409169  1
2013 Lau WC, Rubinstein JL. Single particle electron microscopy. Methods in Molecular Biology (Clifton, N.J.). 955: 401-26. PMID 23132073 DOI: 10.1007/978-1-62703-176-9_22  1
2012 Benlekbir S, Bueler SA, Rubinstein JL. Structure of the vacuolar-type ATPase from Saccharomyces cerevisiae at 11-Å resolution. Nature Structural & Molecular Biology. 19: 1356-62. PMID 23142977 DOI: 10.1038/nsmb.2422  1
2012 Baker LA, Watt IN, Runswick MJ, Walker JE, Rubinstein JL. Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM. Proceedings of the National Academy of Sciences of the United States of America. 109: 11675-80. PMID 22753497 DOI: 10.1073/pnas.1204935109  1
2012 Errington WJ, Khan MQ, Bueler SA, Rubinstein JL, Chakrabartty A, Privé GG. Adaptor protein self-assembly drives the control of a cullin-RING ubiquitin ligase. Structure (London, England : 1993). 20: 1141-53. PMID 22632832 DOI: 10.1016/j.str.2012.04.009  1
2012 Lau WC, Rubinstein JL. Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase. Nature. 481: 214-8. PMID 22178924 DOI: 10.1038/nature10699  1
2011 Baldwin AJ, Lioe H, Hilton GR, Baker LA, Rubinstein JL, Kay LE, Benesch JL. The polydispersity of αB-crystallin is rationalized by an interconverting polyhedral architecture. Structure (London, England : 1993). 19: 1855-63. PMID 22153508 DOI: 10.1016/j.str.2011.09.015  1
2011 Henderson R, Chen S, Chen JZ, Grigorieff N, Passmore LA, Ciccarelli L, Rubinstein JL, Crowther RA, Stewart PL, Rosenthal PB. Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy. Journal of Molecular Biology. 413: 1028-46. PMID 21939668 DOI: 10.1016/j.jmb.2011.09.008  1
2011 Baker LA, Rubinstein JL. Edged watershed segmentation: a semi-interactive algorithm for segmentation of low-resolution maps from electron cryomicroscopy. Journal of Structural Biology. 176: 127-32. PMID 21763426 DOI: 10.1016/j.jsb.2011.06.012  1
2011 Lovell JF, Jin CS, Huynh E, Jin H, Kim C, Rubinstein JL, Chan WC, Cao W, Wang LV, Zheng G. Porphysome nanovesicles generated by porphyrin bilayers for use as multimodal biophotonic contrast agents. Nature Materials. 10: 324-32. PMID 21423187 DOI: 10.1038/nmat2986  1
2011 Schmidt-Krey I, Rubinstein JL. Electron cryomicroscopy of membrane proteins: specimen preparation for two-dimensional crystals and single particles. Micron (Oxford, England : 1993). 42: 107-16. PMID 20678942 DOI: 10.1016/j.micron.2010.07.004  1
2010 Baker LA, Rubinstein JL. Radiation damage in electron cryomicroscopy. Methods in Enzymology. 481: 371-88. PMID 20887865 DOI: 10.1016/S0076-6879(10)81015-8  1
2010 Jaitly N, Brubaker MA, Rubinstein JL, Lilien RH. A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy. Bioinformatics (Oxford, England). 26: 2406-15. PMID 20702397 DOI: 10.1093/bioinformatics/btq456  1
2010 Cardarelli L, Pell LG, Neudecker P, Pirani N, Liu A, Baker LA, Rubinstein JL, Maxwell KL, Davidson AR. Phages have adapted the same protein fold to fulfill multiple functions in virion assembly. Proceedings of the National Academy of Sciences of the United States of America. 107: 14384-9. PMID 20660769 DOI: 10.1073/pnas.1005822107  1
2010 Lau WC, Rubinstein JL. Structure of intact Thermus thermophilus V-ATPase by cryo-EM reveals organization of the membrane-bound V(O) motor. Proceedings of the National Academy of Sciences of the United States of America. 107: 1367-72. PMID 20080582 DOI: 10.1073/pnas.0911085107  1
2010 Baker LA, Smith EA, Bueler SA, Rubinstein JL. The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals. Journal of Structural Biology. 169: 431-7. PMID 19958834 DOI: 10.1016/j.jsb.2009.11.014  1
2010 Cardarelli L, Lam R, Tuite A, Baker LA, Sadowski PD, Radford DR, Rubinstein JL, Battaile KP, Chirgadze N, Maxwell KL, Davidson AR. The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins. Journal of Molecular Biology. 395: 754-68. PMID 19895817 DOI: 10.1016/j.jmb.2009.10.067  1
2010 MacKinnon N, Guérin G, Liu B, Gradinaru CC, Rubinstein JL, Macdonald PM. Triggered instability of liposomes bound to hydrophobically modified core-shell PNIPAM hydrogel beads. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 1081-9. PMID 19754070 DOI: 10.1021/la902423v  1
2010 Baker LA, Rubinstein JL. Single particle electron microscopy of the mitochondrial atp synthase Biophysical Reviews and Letters. 5: 59-71. DOI: 10.1142/S1793048010001135  1
2009 Rujiviphat J, Meglei G, Rubinstein JL, McQuibban GA. Phospholipid association is essential for dynamin-related protein Mgm1 to function in mitochondrial membrane fusion. The Journal of Biological Chemistry. 284: 28682-6. PMID 19703904 DOI: 10.1074/jbc.M109.044933  1
2008 Bueler SA, Rubinstein JL. Location of subunit d in the peripheral stalk of the ATP synthase from Saccharomyces cerevisiae. Biochemistry. 47: 11804-10. PMID 18937496 DOI: 10.1021/bi801665x  1
2008 Lau WC, Baker LA, Rubinstein JL. Cryo-EM structure of the yeast ATP synthase. Journal of Molecular Biology. 382: 1256-64. PMID 18722382 DOI: 10.1016/j.jmb.2008.08.014  1
2008 Sprangers R, Li X, Mao X, Rubinstein JL, Schimmer AD, Kay LE. TROSY-based NMR evidence for a novel class of 20S proteasome inhibitors. Biochemistry. 47: 6727-34. PMID 18540636 DOI: 10.1021/bi8005913  1
2008 Baker LA, Rubinstein JL. Angle determination for side views in single particle electron microscopy. Journal of Structural Biology. 162: 260-70. PMID 18272396 DOI: 10.1016/j.jsb.2008.01.001  1
2008 Tocilj A, Munger C, Proteau A, Morona R, Purins L, Ajamian E, Wagner J, Papadopoulos M, Van Den Bosch L, Rubinstein JL, Féthière J, Matte A, Cygler M. Bacterial polysaccharide co-polymerases share a common framework for control of polymer length Nature Structural and Molecular Biology. 15: 130-138. PMID 18204465 DOI: 10.1038/nsmb.1374  1
2008 Andersen FF, Knudsen B, Oliveira CL, Frøhlich RF, Krüger D, Bungert J, Agbandje-McKenna M, McKenna R, Juul S, Veigaard C, Koch J, Rubinstein JL, Guldbrandtsen B, Hede MS, Karlsson G, et al. Assembly and structural analysis of a covalently closed nano-scale DNA cage. Nucleic Acids Research. 36: 1113-9. PMID 18096620 DOI: 10.1093/nar/gkm1124  1
2008 Tate CG, Rubinstein JL. Membrane Protein Structure Determination by Electron Cryo-Microscopy Biophysical Analysis of Membrane Proteins: Investigating Structure and Function. 29-54. DOI: 10.1002/9783527621224.ch2  1
2007 Rubinstein JL. Structural analysis of membrane protein complexes by single particle electron microscopy. Methods (San Diego, Calif.). 41: 409-16. PMID 17367713 DOI: 10.1016/j.ymeth.2006.07.019  1
2006 Rubinstein JL. The mitochondrial ATP synthase: Improved resolution cryo-EM model and insight into the structure of the peripheral stalk region Microscopy and Microanalysis. 12: 368-369. DOI: 10.1017/S1431927606062738  1
2005 Rubinstein JL, Dickson VK, Runswick MJ, Walker JE. ATP synthase from Saccharomyces cerevisiae: location of subunit h in the peripheral stalk region. Journal of Molecular Biology. 345: 513-20. PMID 15581895 DOI: 10.1016/j.jmb.2004.10.060  1
2003 Rubinstein JL, Walker JE, Henderson R. Structure of the mitochondrial ATP synthase by electron cryomicroscopy. The Embo Journal. 22: 6182-92. PMID 14633978 DOI: 10.1093/emboj/cdg608  1
2003 Rubinstein JL, Holt LJ, Walker JE, Tomlinson IM. Use of phage display and high-density screening for the isolation of an antibody against the 51-kDa subunit of complex I. Analytical Biochemistry. 314: 294-300. PMID 12654316 DOI: 10.1016/S0003-2697(02)00649-8  1
2002 Rubinstein JL, Walker JE. ATP synthase from Saccharomyces cerevisiae: Location of the OSCP subunit in the peripheral stalk region Journal of Molecular Biology. 321: 613-619. PMID 12206777 DOI: 10.1016/S0022-2836(02)00671-X  1
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