Sarah A. Teichmann, Ph.D. - Publications

Affiliations: 
Structural Studies division MRC Laboratory of Molecular Biology, Cambridge, England, United Kingdom 
Area:
Computational Biology

156 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition. Nature Communications. 11: 586. PMID 31996681 DOI: 10.1038/s41467-019-14171-5  1
2019 Dobie R, Wilson-Kanamori JR, Henderson BEP, Smith JR, Matchett KP, Portman JR, Wallenborg K, Picelli S, Zagorska A, Pendem SV, Hudson TE, Wu MM, Budas GR, Breckenridge DG, Harrison EM, ... ... Teichmann SA, et al. Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis. Cell Reports. 29: 1832-1847.e8. PMID 31722201 DOI: 10.1016/j.celrep.2019.10.024  1
2019 Popescu DM, Botting RA, Stephenson E, Green K, Webb S, Jardine L, Calderbank EF, Polanski K, Goh I, Efremova M, Acres M, Maunder D, Vegh P, Gitton Y, Park JE, ... ... Teichmann SA, et al. Decoding human fetal liver haematopoiesis. Nature. PMID 31597962 DOI: 10.1038/s41586-019-1652-y  1
2018 Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E, Polański K, Goncalves A, Gardner L, Holmqvist S, Henriksson J, Zou A, Sharkey AM, ... ... Teichmann SA, et al. Single-cell reconstruction of the early maternal-fetal interface in humans. Nature. 563: 347-353. PMID 30429548 DOI: 10.1038/s41586-018-0698-6  1
2018 Pramanik J, Chen X, Kar G, Henriksson J, Gomes T, Park JE, Natarajan K, Meyer KB, Miao Z, McKenzie ANJ, Mahata B, Teichmann SA. Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation. Genome Medicine. 10: 76. PMID 30355343 DOI: 10.1186/s13073-018-0589-3  1
2018 Marsh JA, Teichmann SA. Editorial overview: Sequences and topology: Dynamic sequences and topologies of proteins. Current Opinion in Structural Biology. 50: vii-viii. PMID 30080482 DOI: 10.1016/j.sbi.2018.07.005  1
2018 Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K, Qiao SW, Sollid LM, Teichmann SA, Stubbington MJT. BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq. Nature Methods. 15: 563-565. PMID 30065371 DOI: 10.1038/s41592-018-0082-3  1
2018 Svensson V, Teichmann SA, Stegle O. SpatialDE: identification of spatially variable genes. Nature Methods. PMID 29553579 DOI: 10.1038/nmeth.4636  1
2018 Svensson V, Vento-Tormo R, Teichmann SA. Exponential scaling of single-cell RNA-seq in the past decade. Nature Protocols. 13: 599-604. PMID 29494575 DOI: 10.1038/nprot.2017.149  1
2018 Natan E, Endoh T, Haim-Vilmovsky L, Flock T, Chalancon G, Hopper JTS, Kintses B, Horvath P, Daruka L, Fekete G, Pál C, Papp B, Oszi E, Magyar Z, Marsh JA, ... ... Teichmann SA, et al. Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins. Nature Structural & Molecular Biology. PMID 29434345 DOI: 10.1038/s41594-018-0029-5  1
2017 Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/eLife.27041  1
2017 Rozenblatt-Rosen O, Stubbington MJT, Regev A, Teichmann SA. The Human Cell Atlas: from vision to reality. Nature. 550: 451-453. PMID 29072289 DOI: 10.1038/550451a  1
2017 Yang J, Ryan DJ, Wang W, Tsang JC, Lan G, Masaki H, Gao X, Antunes L, Yu Y, Zhu Z, Wang J, Kolodziejczyk AA, Campos LS, Wang C, Yang F, ... ... Teichmann SA, et al. Establishment of mouse expanded potential stem cells. Nature. PMID 29019987 DOI: 10.1038/nature24052  1
2017 Stubbington MJT, Rozenblatt-Rosen O, Regev A, Teichmann SA. Single-cell transcriptomics to explore the immune system in health and disease. Science (New York, N.Y.). 358: 58-63. PMID 28983043 DOI: 10.1126/science.aan6828  1
2017 Hegazy AN, West NR, Stubbington MJT, Wendt E, Suijker KIM, Datsi A, This S, Danne C, Campion S, Duncan SH, Owens BMJ, Uhlig HH, McMichael A, Bergthaler A, ... Teichmann SA, et al. Circulating and Tissue-resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function is Altered During Inflammation. Gastroenterology. PMID 28782508 DOI: 10.1053/j.gastro.2017.07.047  1
2017 Natarajan KN, Teichmann SA, Kolodziejczyk AA. Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation. Current Opinion in Genetics & Development. 46: 66-76. PMID 28675884 DOI: 10.1016/j.gde.2017.06.003  1
2017 Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Torlai Triglia E, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA. Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression. Nature Communications. 8: 36. PMID 28652613 DOI: 10.1038/s41467-017-00052-2  1
2017 Rostom R, Svensson V, Teichmann SA, Kar G. Computational approaches for interpreting scRNA-seq data. Febs Letters. PMID 28524227 DOI: 10.1002/1873-3468.12684  1
2017 Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJ, Teichmann SA, de la Roche M, Marioni JC, Odom DT. Aging increases cell-to-cell transcriptional variability upon immune stimulation. Science (New York, N.Y.). 355: 1433-1436. PMID 28360329 DOI: 10.1126/science.aah4115  1
2017 Lönnberg T, Svensson V, James KR, Fernandez-Ruiz D, Sebina I, Montandon R, Soon MS, Fogg LG, Nair AS, Liligeto U, Stubbington MJ, Ly LH, Bagger FO, Zwiessele M, Lawrence ND, ... ... Teichmann SA, et al. Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria. Science Immunology. 2. PMID 28345074 DOI: 10.1126/sciimmunol.aal2192  1
2017 Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Power analysis of single-cell RNA-sequencing experiments. Nature Methods. PMID 28263961 DOI: 10.1038/nmeth.4220  1
2016 Natan E, Wells JN, Teichmann SA, Marsh JA. Regulation, evolution and consequences of cotranslational protein complex assembly. Current Opinion in Structural Biology. 42: 90-97. PMID 27969102 DOI: 10.1016/j.sbi.2016.11.023  1
2016 Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ, Svensson V, Sweedler JV, Teichmann SA. Single-cell analysis at the threshold. Nature Biotechnology. 34: 1111-1118. PMID 27824834 DOI: 10.1038/nbt.3721  1
2016 Eckersley-Maslin MA, Svensson V, Krueger C, Stubbs TM, Giehr P, Krueger F, Miragaia RJ, Kyriakopoulos C, Berrens RV, Milagre I, Walter J, Teichmann SA, Reik W. MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs. Cell Reports. 17: 179-92. PMID 27681430 DOI: 10.1016/j.celrep.2016.08.087  1
2016 Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, ... ... Teichmann SA, et al. Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation. Genome Biology. 17: 133. PMID 27333907 DOI: 10.1186/s13059-016-0998-9  1
2016 Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, ... ... Teichmann SA, et al. Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation. Genome Biology. 17: 103. PMID 27176874 DOI: 10.1186/s13059-016-0957-5  1
2016 Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA. Classification of low quality cells from single-cell RNA-seq data. Genome Biology. 17: 29. PMID 26887813 DOI: 10.1186/s13059-016-0888-1  1
2016 Macaulay IC, Svensson V, Labalette C, Ferreira L, Hamey F, Voet T, Teichmann SA, Cvejic A. Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells. Cell Reports. PMID 26804912 DOI: 10.1016/j.celrep.2015.12.082  1
2016 Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC. Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nature Communications. 7: 10415. PMID 26752026 DOI: 10.1038/ncomms10415  1
2015 Ahnert SE, Marsh JA, Hernández H, Robinson CV, Teichmann SA. Principles of assembly reveal a periodic table of protein complexes. Science (New York, N.Y.). 350: aaa2245. PMID 26659058 DOI: 10.1126/science.aaa2245  1
2015 Kim JK, Kolodziejczyk AA, Illicic T, Teichmann SA, Marioni JC. Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nature Communications. 6: 8687. PMID 26489834 DOI: 10.1038/ncomms9687  1
2015 Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA. Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation. Cell Stem Cell. 17: 471-485. PMID 26431182 DOI: 10.1016/j.stem.2015.09.011  1
2015 Sousa FL, Parente DJ, Shis DL, Hessman JA, Chazelle A, Bennett MR, Teichmann SA, Swint-Kruse L. AlloRep: a repository of sequence, structural and mutagenesis data for the LacI/GalR transcription regulators. Journal of Molecular Biology. PMID 26410588 DOI: 10.1016/j.jmb.2015.09.015  1
2015 Tsang JC, Yu Y, Burke S, Buettner F, Wang C, Kolodziejczyk AA, Teichmann SA, Lu L, Liu P. Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells. Genome Biology. 16: 178. PMID 26387834 DOI: 10.1186/s13059-015-0739-5  1
2015 Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F. Computational assignment of cell-cycle stage from single-cell transcriptome data. Methods (San Diego, Calif.). 85: 54-61. PMID 26142758 DOI: 10.1016/j.ymeth.2015.06.021  1
2015 Xie X, Stubbington MJ, Nissen JK, Andersen KG, Hebenstreit D, Teichmann SA, Betz AG. The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding. Plos Genetics. 11: e1005251. PMID 26107960 DOI: 10.1371/journal.pgen.1005251  1
2015 Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. The Technology and Biology of Single-Cell RNA Sequencing. Molecular Cell. 58: 610-620. PMID 26000846 DOI: 10.1016/j.molcel.2015.04.005  1
2015 Stubbington MJ, Mahata B, Svensson V, Deonarine A, Nissen JK, Betz AG, Teichmann SA. An atlas of mouse CD4(+) T cell transcriptomes. Biology Direct. 10: 14. PMID 25886751 DOI: 10.1186/s13062-015-0045-x  1
2015 Marsh JA, Rees HA, Ahnert SE, Teichmann SA. Structural and evolutionary versatility in protein complexes with uneven stoichiometry. Nature Communications. 6: 6394. PMID 25775164 DOI: 10.1038/ncomms7394  1
2015 Stegle O, Teichmann SA, Marioni JC. Computational and analytical challenges in single-cell transcriptomics. Nature Reviews. Genetics. 16: 133-45. PMID 25628217 DOI: 10.1038/nrg3833  1
2015 Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nature Biotechnology. 33: 155-60. PMID 25599176 DOI: 10.1038/nbt.3102  1
2015 Marsh JA, Teichmann SA. Structure, dynamics, assembly, and evolution of protein complexes. Annual Review of Biochemistry. 84: 551-75. PMID 25494300 DOI: 10.1146/annurev-biochem-060614-034142  1
2014 Perica T, Kondo Y, Tiwari SP, McLaughlin SH, Kemplen KR, Zhang X, Steward A, Reuter N, Clarke J, Teichmann SA. Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science (New York, N.Y.). 346: 1254346. PMID 25525255 DOI: 10.1126/science.1254346  1
2014 Marsh JA, Teichmann SA. Protein flexibility facilitates quaternary structure assembly and evolution. Plos Biology. 12: e1001870. PMID 24866000 DOI: 10.1371/journal.pbio.1001870  1
2014 Mahata B, Zhang X, Kolodziejczyk AA, Proserpio V, Haim-Vilmovsky L, Taylor AE, Hebenstreit D, Dingler FA, Moignard V, Göttgens B, Arlt W, McKenzie AN, Teichmann SA. Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis. Cell Reports. 7: 1130-42. PMID 24813893 DOI: 10.1016/j.celrep.2014.04.011  1
2014 Marsh JA, Teichmann SA. Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 209-18. PMID 24272815 DOI: 10.1002/bies.201300134  1
2013 Feig C, Jones JO, Kraman M, Wells RJ, Deonarine A, Chan DS, Connell CM, Roberts EW, Zhao Q, Caballero OL, Teichmann SA, Janowitz T, Jodrell DI, Tuveson DA, Fearon DT. Targeting CXCL12 from FAP-expressing carcinoma-associated fibroblasts synergizes with anti-PD-L1 immunotherapy in pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America. 110: 20212-7. PMID 24277834 DOI: 10.1073/pnas.1320318110  1
2013 Teichmann SA. Immunology meets genomics. Briefings in Functional Genomics. 12: 469-70. PMID 24273194 DOI: 10.1093/bfgp/elt037  1
2013 Brennecke P, Anders S, Kim JK, Ko?odziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Accounting for technical noise in single-cell RNA-seq experiments. Nature Methods. 10: 1093-5. PMID 24056876 DOI: 10.1038/nmeth.2645  1
2013 Zhang X, Perica T, Teichmann SA. Evolution of protein structures and interactions from the perspective of residue contact networks. Current Opinion in Structural Biology. 23: 954-63. PMID 23890840 DOI: 10.1016/j.sbi.2013.07.004  1
2013 Hall Z, Hernández H, Marsh JA, Teichmann SA, Robinson CV. The role of salt bridges, charge density, and subunit flexibility in determining disassembly routes of protein complexes. Structure (London, England : 1993). 21: 1325-37. PMID 23850452 DOI: 10.1016/j.str.2013.06.004  1
2013 Roberts EW, Deonarine A, Jones JO, Denton AE, Feig C, Lyons SK, Espeli M, Kraman M, McKenna B, Wells RJ, Zhao Q, Caballero OL, Larder R, Coll AP, O'Rahilly S, ... ... Teichmann SA, et al. Depletion of stromal cells expressing fibroblast activation protein-α from skeletal muscle and bone marrow results in cachexia and anemia. The Journal of Experimental Medicine. 210: 1137-51. PMID 23712428 DOI: 10.1084/jem.20122344  1
2013 Marsh JA, Hernández H, Hall Z, Ahnert SE, Perica T, Robinson CV, Teichmann SA. Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell. 153: 461-70. PMID 23582331 DOI: 10.1016/j.cell.2013.02.044  1
2013 Nishi H, Fong JH, Chang C, Teichmann SA, Panchenko AR. Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes. Molecular Biosystems. 9: 1620-6. PMID 23364837 DOI: 10.1039/c3mb25514j  1
2013 Levy ED, Teichmann S. Structural, evolutionary, and assembly principles of protein oligomerization Progress in Molecular Biology and Translational Science. 117: 25-51. DOI: 10.1016/B978-0-12-386931-9.00002-7  1
2012 Levy ED, De S, Teichmann SA. Cellular crowding imposes global constraints on the chemistry and evolution of proteomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 20461-6. PMID 23184996 DOI: 10.1073/pnas.1209312109  1
2012 Teichmann SA, Wigge PA, Charoensawan V. Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes. Cell Cycle (Georgetown, Tex.). 11: 4487-8. PMID 23165207 DOI: 10.4161/cc.22666  1
2012 Marsh JA, Teichmann SA, Forman-Kay JD. Probing the diverse landscape of protein flexibility and binding. Current Opinion in Structural Biology. 22: 643-50. PMID 22999889 DOI: 10.1016/j.sbi.2012.08.008  1
2012 Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA. DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Molecular Cell. 47: 183-92. PMID 22841002 DOI: 10.1016/j.molcel.2012.06.028  1
2012 Perica T, Marsh JA, Sousa FL, Natan E, Colwell LJ, Ahnert SE, Teichmann SA. The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochemical Society Transactions. 40: 475-91. PMID 22616857 DOI: 10.1042/BST20120056  1
2012 Perica T, Chothia C, Teichmann SA. Evolution of oligomeric state through geometric coupling of protein interfaces. Proceedings of the National Academy of Sciences of the United States of America. 109: 8127-32. PMID 22566652 DOI: 10.1073/pnas.1120028109  1
2012 Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/pro.2071  1
2012 Hebenstreit D, Deonarine A, Babu MM, Teichmann SA. Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells. Current Opinion in Cell Biology. 24: 350-8. PMID 22498241 DOI: 10.1016/j.ceb.2012.03.007  1
2012 Brookes E, de Santiago I, Hebenstreit D, Morris KJ, Carroll T, Xie SQ, Stock JK, Heidemann M, Eick D, Nozaki N, Kimura H, Ragoussis J, Teichmann SA, Pombo A. Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs. Cell Stem Cell. 10: 157-70. PMID 22305566 DOI: 10.1016/j.stem.2011.12.017  1
2012 Vaquerizas JM, Teichmann SA, Luscombe NM. How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome. Methods in Molecular Biology (Clifton, N.J.). 786: 3-19. PMID 21938617 DOI: 10.1007/978-1-61779-292-2_1  1
2012 Lones MA, Smith SL, Teichmann S, Naef F, Walker JA, Trefzer MA. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7223: V-VI.  1
2011 Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, Teichmann SA. RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Molecular Systems Biology. 7: 497. PMID 21654674 DOI: 10.1038/msb.2011.28  1
2011 Marsh JA, Teichmann SA. Relative solvent accessible surface area predicts protein conformational changes upon binding. Structure (London, England : 1993). 19: 859-67. PMID 21645856 DOI: 10.1016/j.str.2011.03.010  1
2011 Hebenstreit D, Teichmann SA. Analysis and simulation of gene expression profiles in pure and mixed cell populations. Physical Biology. 8: 035013. PMID 21572174 DOI: 10.1088/1478-3975/8/3/035013  1
2011 Hebenstreit D, Gu M, Haider S, Turner DJ, Liò P, Teichmann SA. EpiChIP: gene-by-gene quantification of epigenetic modification levels. Nucleic Acids Research. 39: e27. PMID 21131282 DOI: 10.1093/nar/gkq1226  1
2010 Su J, Teichmann SA, Down TA. Assessing computational methods of cis-regulatory module prediction. Plos Computational Biology. 6: e1001020. PMID 21152003 DOI: 10.1371/journal.pcbi.1001020  1
2010 Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA. The impact of gene expression regulation on evolution of extracellular signaling pathways. Molecular & Cellular Proteomics : McP. 9: 2666-77. PMID 20935258 DOI: 10.1074/mcp.M110.003020  1
2010 Martin S, Söllner C, Charoensawan V, Adryan B, Thisse B, Thisse C, Teichmann S, Wright GJ. Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Molecular & Cellular Proteomics : McP. 9: 2654-65. PMID 20802085 DOI: 10.1074/mcp.M110.004119  1
2010 Charoensawan V, Wilson D, Teichmann SA. Genomic repertoires of DNA-binding transcription factors across the tree of life. Nucleic Acids Research. 38: 7364-77. PMID 20675356 DOI: 10.1093/nar/gkq617  1
2010 Charoensawan V, Wilson D, Teichmann SA. Lineage-specific expansion of DNA-binding transcription factor families. Trends in Genetics : Tig. 26: 388-93. PMID 20675012 DOI: 10.1016/j.tig.2010.06.004  1
2010 Venkatakrishnan AJ, Levy ED, Teichmann SA. Homomeric protein complexes: evolution and assembly. Biochemical Society Transactions. 38: 879-82. PMID 20658970 DOI: 10.1042/BST0380879  1
2010 Marsh JA, Teichmann SA. How do proteins gain new domains? Genome Biology. 11: 126. PMID 20630117 DOI: 10.1186/gb-2010-11-7-126  1
2010 Levy ED, Teichmann SA. Systemizing the structures and structuring the system. Expert Review of Proteomics. 7: 319-22. PMID 20536302 DOI: 10.1586/epr.10.33  1
2010 Teichmann SA, Grishin N. Sequences and topology: evolution of proteins and evolution of computational approaches. Current Opinion in Structural Biology. 20: 333-4. PMID 20483587 DOI: 10.1016/j.sbi.2010.04.004  1
2010 Adryan B, Teichmann SA. The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biology. 11: R40. PMID 20384991 DOI: 10.1186/gb-2010-11-4-r40  1
2010 Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, ... ... Teichmann SA, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell. 140: 744-52. PMID 20211142 DOI: 10.1016/j.cell.2010.01.044  1
2010 Pfreundt U, James DP, Tweedie S, Wilson D, Teichmann SA, Adryan B. FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Research. 38: D443-7. PMID 19884132 DOI: 10.1093/nar/gkp910  1
2009 Wilson NK, Miranda-Saavedra D, Kinston S, Bonadies N, Foster SD, Calero-Nieto F, Dawson MA, Donaldson IJ, Dumon S, Frampton J, Janky R, Sun XH, Teichmann SA, Bannister AJ, Göttgens B. The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood. 113: 5456-65. PMID 19346495 DOI: 10.1182/blood-2009-01-200048  1
2009 Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nature Reviews. Genetics. 10: 252-63. PMID 19274049 DOI: 10.1038/nrg2538  1
2009 De S, Teichmann SA, Babu MM. The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. Genome Research. 19: 785-94. PMID 19233772 DOI: 10.1101/gr.086165.108  1
2009 Watkins NA, Gusnanto A, de Bono B, De S, Miranda-Saavedra D, Hardie DL, Angenent WG, Attwood AP, Ellis PD, Erber W, Foad NS, Garner SF, Isacke CM, Jolley J, Koch K, ... ... Teichmann S, et al. A HaemAtlas: characterizing gene expression in differentiated human blood cells. Blood. 113: e1-9. PMID 19228925 DOI: 10.1182/blood-2008-06-162958  1
2009 Kummerfeld SK, Teichmann SA. Protein domain organisation: adding order. Bmc Bioinformatics. 10: 39. PMID 19178743 DOI: 10.1186/1471-2105-10-39  1
2009 Miranda-Saavedra D, De S, Trotter MW, Teichmann SA, Göttgens B. BloodExpress: a database of gene expression in mouse haematopoiesis. Nucleic Acids Research. 37: D873-9. PMID 18987008 DOI: 10.1093/nar/gkn854  1
2008 Teichmann S, Patel NH. Genomes and evolution: multidimensional approaches to understanding diversity. Current Opinion in Genetics & Development. 18: 469-71. PMID 19109008 DOI: 10.1016/j.gde.2008.11.003  1
2008 Gsponer J, Futschik ME, Teichmann SA, Babu MM. Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science (New York, N.Y.). 322: 1365-8. PMID 19039133 DOI: 10.1126/science.1163581  1
2008 Ahnert SE, Teichmann SA. Networks for all. Genome Biology. 9: 324. PMID 18983700 DOI: 10.1186/gb-2008-9-10-324  1
2008 De S, Lopez-Bigas N, Teichmann SA. Patterns of evolutionary constraints on genes in humans. Bmc Evolutionary Biology. 8: 275. PMID 18840274 DOI: 10.1186/1471-2148-8-275  1
2008 Levy ED, Boeri Erba E, Robinson CV, Teichmann SA. Assembly reflects evolution of protein complexes. Nature. 453: 1262-5. PMID 18563089 DOI: 10.1038/nature06942  1
2008 Teichmann SA, Grishin NV. Sequences and topology: from genome structure to protein structure. Current Opinion in Structural Biology. 18: 340-1. PMID 18539451 DOI: 10.1016/j.sbi.2008.05.006  1
2008 Hermsen R, ten Wolde PR, Teichmann S. Chance and necessity in chromosomal gene distributions Trends in Genetics. 24: 216-219. PMID 18378035 DOI: 10.1016/j.tig.2008.02.004  1
2008 Lopez-Bigas N, De S, Teichmann SA. Functional protein divergence in the evolution of Homo sapiens. Genome Biology. 9: R33. PMID 18279504 DOI: 10.1186/gb-2008-9-2-r33  1
2008 Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. DBD--taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Research. 36: D88-92. PMID 18073188 DOI: 10.1093/nar/gkm964  1
2007 Adryan B, Teichmann SA. Computational identification of site-specific transcription factors in Drosophila. Fly. 1: 142-5. PMID 18820428  1
2007 Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA. Evolution of protein complexes by duplication of homomeric interactions. Genome Biology. 8: R51. PMID 17411433 DOI: 10.1186/gb-2007-8-4-r51  1
2007 Han JH, Batey S, Nickson AA, Teichmann SA, Clarke J. The folding and evolution of multidomain proteins. Nature Reviews. Molecular Cell Biology. 8: 319-30. PMID 17356578 DOI: 10.1038/nrm2144  1
2007 Talavera D, Vogel C, Orozco M, Teichmann SA, de la Cruz X. The (in)dependence of alternative splicing and gene duplication. Plos Computational Biology. 3: e33. PMID 17335345 DOI: 10.1371/journal.pcbi.0030033  1
2006 Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA. 3D complex: a structural classification of protein complexes. Plos Computational Biology. 2: e155. PMID 17112313 DOI: 10.1371/journal.pcbi.0020155  1
2006 Han JH, Kerrison N, Chothia C, Teichmann SA. Divergence of interdomain geometry in two-domain proteins. Structure (London, England : 1993). 14: 935-45. PMID 16698554 DOI: 10.1016/j.str.2006.01.016  1
2006 Nye TMW, Berzuini C, Gilks WR, Babu MM, Teichmann S. Predicting the strongest domain-domain contact in interacting protein pairs Statistical Applications in Genetics and Molecular Biology [Electronic Resource].. 5: Article5. PMID 16646869  1
2006 Adryan B, Teichmann SA. FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster. Bioinformatics (Oxford, England). 22: 1532-3. PMID 16613907 DOI: 10.1093/bioinformatics/btl143  1
2006 Madan Babu M, Teichmann SA, Aravind L. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. Journal of Molecular Biology. 358: 614-33. PMID 16530225 DOI: 10.1016/j.jmb.2006.02.019  1
2006 Pereira-Leal JB, Levy ED, Teichmann SA. The origins and evolution of functional modules: lessons from protein complexes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 507-17. PMID 16524839 DOI: 10.1098/rstb.2005.1807  1
2006 Kummerfeld SK, Teichmann SA. DBD: a transcription factor prediction database. Nucleic Acids Research. 34: D74-81. PMID 16381970 DOI: 10.1093/nar/gkj131  1
2006 Teichmann SA, Grishin NV. Sequences and topology: from methods to meaning Current Opinion in Structural Biology. 16: 359-361. DOI: 10.1016/j.sbi.2006.05.012  1
2005 Wright CF, Teichmann SA, Clarke J, Dobson CM. The importance of sequence diversity in the aggregation and evolution of proteins. Nature. 438: 878-81. PMID 16341018 DOI: 10.1038/nature04195  1
2005 Teichmann SA, Bornberg-Bauer E, Luscombe NM. Transcriptional networking. Genome Biology. 6: 344. PMID 16168097 DOI: 10.1186/gb-2005-6-9-344  1
2005 Pereira-Leal JB, Teichmann SA. Novel specificities emerge by stepwise duplication of functional modules. Genome Research. 15: 552-9. PMID 15805495 DOI: 10.1101/gr.3102105  1
2005 Kunin V, Teichmann SA, Huynen MA, Ouzounis CA. The properties of protein family space depend on experimental design. Bioinformatics (Oxford, England). 21: 2618-22. PMID 15769834 DOI: 10.1093/bioinformatics/bti386  1
2005 Bornberg-Bauer E, Beaussart F, Kummerfeld SK, Teichmann SA, Weiner J. The evolution of domain arrangements in proteins and interaction networks. Cellular and Molecular Life Sciences : Cmls. 62: 435-45. PMID 15719170 DOI: 10.1007/s00018-004-4416-1  1
2005 Kummerfeld SK, Teichmann SA. Relative rates of gene fusion and fission in multi-domain proteins. Trends in Genetics : Tig. 21: 25-30. PMID 15680510 DOI: 10.1016/j.tig.2004.11.007  1
2005 Vogel C, Teichmann SA, Pereira-Leal J. The relationship between domain duplication and recombination. Journal of Molecular Biology. 346: 355-65. PMID 15663950 DOI: 10.1016/j.jmb.2004.11.050  1
2005 Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA. Statistical analysis of domains in interacting protein pairs. Bioinformatics (Oxford, England). 21: 993-1001. PMID 15509600 DOI: 10.1093/bioinformatics/bti086  1
2005 Strickert M, Teichmann S, Sreenivasulu N, Seiffert U. High-Throughput Multi-dimensional Scaling (HiT-MDS) for cDNA-array expression data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3696: 625-633. DOI: 10.1007/11550822_97  1
2005 Strickert M, Teichmann S, Sreenivasulu N, Seiffert U. 'DiPPP' online self-improving linear map for distance-preserving data analysis Wsom 2005 - 5th Workshop On Self-Organizing Maps. 661-668.  1
2004 Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature. 431: 308-12. PMID 15372033 DOI: 10.1038/nature02782  1
2004 Teichmann SA, Veitia RA. Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective. Genetics. 167: 2121-5. PMID 15342545 DOI: 10.1534/genetics.103.024505  1
2004 Babu MM, Luscombe NM, Aravind L, Gerstein M, Teichmann SA. Structure and evolution of transcriptional regulatory networks. Current Opinion in Structural Biology. 14: 283-91. PMID 15193307 DOI: 10.1016/j.sbi.2004.05.004  1
2004 Teichmann SA, Babu MM. Gene regulatory network growth by duplication. Nature Genetics. 36: 492-6. PMID 15107850 DOI: 10.1038/ng1340  1
2004 Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA. Supra-domains: evolutionary units larger than single protein domains. Journal of Molecular Biology. 336: 809-23. PMID 15095989 DOI: 10.1016/j.jmb.2003.12.026  1
2004 Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA. Structure, function and evolution of multidomain proteins. Current Opinion in Structural Biology. 14: 208-16. PMID 15093836 DOI: 10.1016/j.sbi.2004.03.011  1
2004 Schwabe JW, Teichmann SA. Nuclear receptors: the evolution of diversity. Science's Stke : Signal Transduction Knowledge Environment. 2004: pe4. PMID 14747695 DOI: 10.1126/stke.2172004pe4  1
2003 Apic G, Huber W, Teichmann SA. Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination. Journal of Structural and Functional Genomics. 4: 67-78. PMID 14649290 DOI: 10.1023/A:1026113408773  1
2003 Vogel C, Teichmann SA, Chothia C. The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity. Development (Cambridge, England). 130: 6317-28. PMID 14623821 DOI: 10.1242/dev.00848  1
2003 Bankier AT, Spriggs HF, Fartmann B, Konfortov BA, Madera M, Vogel C, Teichmann SA, Ivens A, Dear PH. Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum. Genome Research. 13: 1787-99. PMID 12869580 DOI: 10.1101/gr.1555203  1
2003 Chothia C, Gough J, Vogel C, Teichmann SA. Evolution of the protein repertoire. Science (New York, N.Y.). 300: 1701-3. PMID 12805536 DOI: 10.1126/science.1085371  1
2003 Madan Babu M, Teichmann SA. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Research. 31: 1234-44. PMID 12582243 DOI: 10.1093/nar/gkg210  1
2003 Madan Babu M, Teichmann SA. Functional determinants of transcription factors in Escherichia coli: protein families and binding sites. Trends in Genetics : Tig. 19: 75-9. PMID 12547514 DOI: 10.1016/S0168-9525(02)00039-2  1
2002 Teichmann SA. The constraints protein-protein interactions place on sequence divergence. Journal of Molecular Biology. 324: 399-407. PMID 12445777 DOI: 10.1016/S0022-2836(02)01144-0  1
2002 Teichmann SA. Principles of protein-protein interactions. Bioinformatics (Oxford, England). 18: S249. PMID 12386009  1
2002 Teichmann SA, Babu MM. Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends in Biotechnology. 20: 407-10; discussion 4. PMID 12220896 DOI: 10.1016/S0167-7799(02)02032-2  1
2002 Rison SC, Teichmann SA, Thornton JM. Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli. Journal of Molecular Biology. 318: 911-32. PMID 12054833 DOI: 10.1016/S0022-2836(02)00140-7  1
2002 Jardine O, Gough J, Chothia C, Teichmann SA. Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae. Genome Research. 12: 916-29. PMID 12045145 DOI: 10.1101/gr.228002  1
2001 Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. Small-molecule metabolism: an enzyme mosaic. Trends in Biotechnology. 19: 482-6. PMID 11711174 DOI: 10.1016/S0167-7799(01)01813-3  1
2001 Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli. Journal of Molecular Biology. 311: 693-708. PMID 11518524 DOI: 10.1006/jmbi.2001.4912  1
2001 Apic G, Gough J, Teichmann SA. An insight into domain combinations. Bioinformatics (Oxford, England). 17: S83-9. PMID 11472996  1
2001 Apic G, Gough J, Teichmann SA. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. Journal of Molecular Biology. 310: 311-25. PMID 11428892 DOI: 10.1006/jmbi.2001.4776  1
2001 Teichmann SA, Murzin AG, Chothia C. Determination of protein function, evolution and interactions by structural genomics. Current Opinion in Structural Biology. 11: 354-63. PMID 11406387 DOI: 10.1016/S0959-440X(00)00215-3  1
2001 Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64. PMID 11292848  1
2001 Park J, Lappe M, Teichmann SA. Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Journal of Molecular Biology. 307: 929-38. PMID 11273711 DOI: 10.1006/jmbi.2001.4526  1
2000 Teichmann SA, Chothia C, Church GM, Park J. Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Bioinformatics (Oxford, England). 16: 117-24. PMID 10842732  1
2000 Teichmann SA, Chothia C. Immunoglobulin superfamily proteins in Caenorhabditis elegans. Journal of Molecular Biology. 296: 1367-83. PMID 10698639 DOI: 10.1006/jmbi.1999.3497  1
2000 Teichmann SA, Mitchison G. Computing protein function. Nature Biotechnology. 18: 27. PMID 10625385 DOI: 10.1038/71882  1
2000 Teichmann SA, Chothia C, Church GM, Park J. PDB_ISL: An intermediate sequence library for protein structure assignment Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 283-289.  1
1999 Teichmann SA, Mitchison G. Is there a phylogenetic signal in prokaryote proteins? Journal of Molecular Evolution. 49: 98-107. PMID 10368438 DOI: 10.1007/PL00006538  1
1999 Teichmann SA, Chothia C, Gerstein M. Advances in structural genomics Current Opinion in Structural Biology. 9: 390-399. PMID 10361097 DOI: 10.1016/S0959-440X(99)80053-0  1
1999 O'Reilly M, Teichmann SA, Rhodes D. Telomerases Current Opinion in Structural Biology. 9: 56-65. PMID 10047586 DOI: 10.1016/S0959-440X(99)80008-6  1
1999 Teichmann SA, Mitchison G. Making family trees from gene families Nature Genetics. 21: 66-67. PMID 9916790 DOI: 10.1038/5001  1
1998 Teichmann SA, Parkt J, Chothia C. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements Proceedings of the National Academy of Sciences of the United States of America. 95: 14658-14663. PMID 9843945 DOI: 10.1073/pnas.95.25.14658  1
1998 Bateman A, Murzin AG, Teichmann SA. Structure and distribution of pentapeptide repeats in bacteria Protein Science. 7: 1477-1480. PMID 9655353  1
1998 Park J, Teichmann SA. DIVCLUS: An automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins Bioinformatics. 14: 144-150. PMID 9545446  1
1997 Park J, Teichmann SA, Hubbard T, Chothia C. Intermediate sequences increase the detection of homology between sequences Journal of Molecular Biology. 273: 349-354. PMID 9367767 DOI: 10.1006/jmbi.1997.1288  1
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