| Year |
Citation |
Score |
| 2020 |
Schön A, Freire E. Binding Thermodynamics to Intrinsically Disordered Protein Domains. Methods in Molecular Biology (Clifton, N.J.). 2141: 449-462. PMID 32696371 DOI: 10.1007/978-1-0716-0524-0_22 |
0.374 |
|
| 2018 |
Alsahafi N, Anand SP, Castillo-Menendez L, Verly MM, Medjahed H, Prévost J, Herschhorn A, Richard J, Schön A, Melillo B, Freire E, Smith AB, Sodroski J, Finzi A. SOSIP changes affect human immunodeficiency virus (HIV-1) envelope glycoprotein conformation and CD4 engagement. Journal of Virology. PMID 30021898 DOI: 10.1128/Jvi.01080-18 |
0.363 |
|
| 2017 |
Herschhorn A, Gu C, Moraca F, Ma X, Farrell M, Smith AB, Pancera M, Kwong PD, Schön A, Freire E, Abrams C, Blanchard SC, Mothes W, Sodroski JG. The β20-β21 of gp120 is a regulatory switch for HIV-1 Env conformational transitions. Nature Communications. 8: 1049. PMID 29051495 DOI: 10.1038/S41467-017-01119-W |
0.354 |
|
| 2017 |
Pancera M, Soumana D, Narpala S, Schon A, Oʼdell S, Druz A, Chuang G, Louder M, Langley D, Freire E, Sodroski J, Mascola J, Mcdermott A, Kwong P. P-D3 Crystal structures of small-molecules HIV-1 entry ihibitor, BMS-378806 and BMS-626529, bound to BG505 SOSIP.664 HIV-1 Env trimer reveal an allosteric competitive etry inhibition mechanism Jaids Journal of Acquired Immune Deficiency Syndromes. 74: 90. DOI: 10.1097/01.Qai.0000513993.43764.Ae |
0.327 |
|
| 2016 |
Schön A, Freire E. Enthalpy screen of drug candidates. Analytical Biochemistry. 513: 1-6. PMID 27567994 DOI: 10.1016/J.Ab.2016.08.023 |
0.31 |
|
| 2016 |
Melillo B, Liang S, Park J, Schön A, Courter JR, LaLonde JM, Wendler DJ, Princiotto AM, Seaman MS, Freire E, Sodroski J, Madani N, Hendrickson WA, Smith AB. Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition. Acs Medicinal Chemistry Letters. 7: 330-4. PMID 26985324 DOI: 10.1021/Acsmedchemlett.5B00471 |
0.381 |
|
| 2016 |
Clarkson BR, Schön A, Freire E. Conformational stability and self-association equilibrium in biologics. Drug Discovery Today. 21: 342-7. PMID 26608889 DOI: 10.1016/J.Drudis.2015.11.007 |
0.303 |
|
| 2015 |
Chauhan J, Chen SE, Fenstermacher KJ, Naser-Tavakolian A, Reingewertz T, Salmo R, Lee C, Williams E, Raje M, Sundberg E, DeStefano JJ, Freire E, Fletcher S. Synthetic, structural mimetics of the β-hairpin flap of HIV-1 protease inhibit enzyme function. Bioorganic & Medicinal Chemistry. PMID 26474665 DOI: 10.1016/J.Bmc.2015.09.002 |
0.409 |
|
| 2015 |
Do Kwon Y, Pancera M, Acharya P, Georgiev IS, Crooks ET, Gorman J, Joyce MG, Guttman M, Ma X, Narpala S, Soto C, Terry DS, Yang Y, Zhou T, Ahlsen G, ... ... Freire E, et al. Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. Nature Structural & Molecular Biology. 22: 522-31. PMID 26098315 DOI: 10.1038/Nsmb.3051 |
0.342 |
|
| 2015 |
Velazquez-Campoy A, Leavitt SA, Freire E. Characterization of protein-protein interactions by isothermal titration calorimetry. Methods in Molecular Biology (Clifton, N.J.). 1278: 183-204. PMID 25859950 DOI: 10.1007/978-1-4939-2425-7_11 |
0.677 |
|
| 2015 |
Georgiev IS, Joyce MG, Yang Y, Sastry M, Zhang B, Baxa U, Chen RE, Druz A, Lees CR, Narpala S, Schön A, Van Galen J, Chuang GY, Gorman J, Harned A, ... ... Freire E, et al. Single-Chain Soluble BG505.SOSIP gp140 Trimers as Structural and Antigenic Mimics of Mature Closed HIV-1 Env. Journal of Virology. 89: 5318-29. PMID 25740988 DOI: 10.1128/Jvi.03451-14 |
0.328 |
|
| 2015 |
Ross P, Weihofen W, Siu F, Xie A, Katakia H, Wright SK, Hunt I, Brown RK, Freire E. Isothermal chemical denaturation to determine binding affinity of small molecules to G-protein coupled receptors. Analytical Biochemistry. 473: 41-5. PMID 25481736 DOI: 10.1016/J.Ab.2014.11.019 |
0.348 |
|
| 2014 |
Madani N, Princiotto AM, Schön A, LaLonde J, Feng Y, Freire E, Park J, Courter JR, Jones DM, Robinson J, Liao HX, Moody AA, Permar S, Haynes B, Smith AB, et al. CD4-mimetic small molecules sensitize human immunodeficiency virus to vaccine-elicited antibodies Journal of Virology. 88: 6542-6555. PMID 24696475 DOI: 10.1128/Jvi.00540-14 |
0.359 |
|
| 2014 |
Courter JR, Madani N, Sodroski J, Schön A, Freire E, Kwong PD, Hendrickson WA, Chaiken IM, LaLonde JM, Smith AB. Structure-based design, synthesis and validation of CD4-mimetic small molecule inhibitors of HIV-1 entry: conversion of a viral entry agonist to an antagonist. Accounts of Chemical Research. 47: 1228-37. PMID 24502450 DOI: 10.1021/Ar4002735 |
0.413 |
|
| 2014 |
Evans SL, Schön A, Gao Q, Han X, Zhou X, Freire E, Yu XF. HIV-1 Vif N-terminal motif is required for recruitment of Cul5 to suppress APOBEC3. Retrovirology. 11: 4. PMID 24422669 DOI: 10.1186/1742-4690-11-4 |
0.405 |
|
| 2013 |
Afanador GA, Muench SP, McPhillie M, Fomovska A, Schön A, Zhou Y, Cheng G, Stec J, Freundlich JS, Shieh HM, Anderson JW, Jacobus DP, Fidock DA, Kozikowski AP, Fishwick CW, ... ... Freire E, et al. Discrimination of potent inhibitors of Toxoplasma gondii enoyl-acyl carrier protein reductase by a thermal shift assay. Biochemistry. 52: 9155-66. PMID 24295325 DOI: 10.1021/Bi400945Y |
0.426 |
|
| 2013 |
Schön A, Brown RK, Hutchins BM, Freire E. Ligand binding analysis and screening by chemical denaturation shift. Analytical Biochemistry. 443: 52-7. PMID 23994566 DOI: 10.1016/J.Ab.2013.08.015 |
0.375 |
|
| 2013 |
Thanigaimalai P, Konno S, Yamamoto T, Koiwai Y, Taguchi A, Takayama K, Yakushiji F, Akaji K, Chen SE, Naser-Tavakolian A, Schön A, Freire E, Hayashi Y. Development of potent dipeptide-type SARS-CoV 3CL protease inhibitors with novel P3 scaffolds: design, synthesis, biological evaluation, and docking studies. European Journal of Medicinal Chemistry. 68: 372-84. PMID 23994330 DOI: 10.1016/J.Ejmech.2013.07.037 |
0.393 |
|
| 2013 |
Thanigaimalai P, Konno S, Yamamoto T, Koiwai Y, Taguchi A, Takayama K, Yakushiji F, Akaji K, Kiso Y, Kawasaki Y, Chen SE, Naser-Tavakolian A, Schön A, Freire E, Hayashi Y. Design, synthesis, and biological evaluation of novel dipeptide-type SARS-CoV 3CL protease inhibitors: structure-activity relationship study. European Journal of Medicinal Chemistry. 65: 436-47. PMID 23747811 DOI: 10.1016/J.Ejmech.2013.05.005 |
0.404 |
|
| 2013 |
Lalonde JM, Le-Khac M, Jones DM, Courter JR, Park J, Schön A, Princiotto AM, Wu X, Mascola JR, Freire E, Sodroski J, Madani N, Hendrickson WA, Smith AB. Structure-Based Design and Synthesis of an HIV-1 Entry Inhibitor Exploiting X-Ray and Thermodynamic Characterization. Acs Medicinal Chemistry Letters. 4: 338-343. PMID 23667716 DOI: 10.1021/Ml300407Y |
0.414 |
|
| 2013 |
Konno S, Thanigaimalai P, Yamamoto T, Nakada K, Kakiuchi R, Takayama K, Yamazaki Y, Yakushiji F, Akaji K, Kiso Y, Kawasaki Y, Chen SE, Freire E, Hayashi Y. Design and synthesis of new tripeptide-type SARS-CoV 3CL protease inhibitors containing an electrophilic arylketone moiety. Bioorganic & Medicinal Chemistry. 21: 412-24. PMID 23245752 DOI: 10.1016/J.Bmc.2012.11.017 |
0.408 |
|
| 2013 |
Kamanna K, Aneja R, Duffy C, Kubinski P, Rodrigo Moreira D, Bailey LD, McFadden K, Schön A, Holmes A, Tuzer F, Contarino M, Freire E, Chaiken IM. Non-natural peptide triazole antagonists of HIV-1 envelope gp120. Chemmedchem. 8: 322-8. PMID 23239505 DOI: 10.1002/Cmdc.201200422 |
0.358 |
|
| 2013 |
Liu Y, Schön A, Freire E. Optimization of CD4/gp120 inhibitors by thermodynamic-guided alanine-scanning mutagenesis. Chemical Biology & Drug Design. 81: 72-8. PMID 23066870 DOI: 10.1111/Cbdd.12075 |
0.435 |
|
| 2012 |
Lalonde JM, Kwon YD, Jones DM, Sun AW, Courter JR, Soeta T, Kobayashi T, Princiotto AM, Wu X, Schön A, Freire E, Kwong PD, Mascola JR, Sodroski J, Madani N, et al. Structure-based design, synthesis, and characterization of dual hotspot small-molecule HIV-1 Entry Inhibitors Journal of Medicinal Chemistry. 55: 4382-4396. PMID 22497421 DOI: 10.1021/Jm300265J |
0.385 |
|
| 2011 |
Kawasaki Y, Freire E. Finding a better path to drug selectivity. Drug Discovery Today. 16: 985-90. PMID 21839183 DOI: 10.1016/J.Drudis.2011.07.010 |
0.363 |
|
| 2011 |
Siles R, Kawasaki Y, Ross P, Freire E. Synthesis and biochemical evaluation of triazole/tetrazole-containing sulfonamides against thrombin and related serine proteases. Bioorganic & Medicinal Chemistry Letters. 21: 5305-9. PMID 21807511 DOI: 10.1016/J.Bmcl.2011.07.023 |
0.401 |
|
| 2011 |
Schön A, Lam SY, Freire E. Thermodynamics-based drug design: strategies for inhibiting protein-protein interactions. Future Medicinal Chemistry. 3: 1129-37. PMID 21806377 DOI: 10.4155/Fmc.11.81 |
0.399 |
|
| 2011 |
Gift SK, Zentner IJ, Schön A, McFadden K, Umashankara M, Rajagopal S, Contarino M, Duffy C, Courter JR, Zhang MY, Gershoni JM, Cocklin S, Dimitrov DS, Smith AB, Freire E, et al. Conformational and structural features of HIV-1 gp120 underlying the dual receptor antagonism by cross-reactive neutralizing antibody m18. Biochemistry. 50: 2756-68. PMID 21351734 DOI: 10.1021/Bi101160R |
0.368 |
|
| 2011 |
Schön A, Madani N, Smith AB, Lalonde JM, Freire E. Some Binding-Related Drug Properties are Dependent on Thermodynamic Signature Chemical Biology and Drug Design. 77: 161-165. PMID 21288305 DOI: 10.1111/J.1747-0285.2010.01075.X |
0.431 |
|
| 2011 |
Lalonde JM, Elban MA, Courter JR, Sugawara A, Soeta T, Madani N, Princiotto AM, Kwon YD, Kwong PD, Schön A, Freire E, Sodroski J, Smith AB. Design, synthesis and biological evaluation of small molecule inhibitors of CD4-gp120 binding based on virtual screening Bioorganic and Medicinal Chemistry. 19: 91-101. PMID 21169023 DOI: 10.1016/J.Bmc.2010.11.049 |
0.434 |
|
| 2010 |
Umashankara M, McFadden K, Zentner I, Schön A, Rajagopal S, Tuzer F, Kuriakose SA, Contarino M, Lalonde J, Freire E, Chaiken I. The active core in a triazole peptide dual-site antagonist of HIV-1 gp120 Chemmedchem. 5: 1871-1879. PMID 20677318 DOI: 10.1002/Cmdc.201000222 |
0.331 |
|
| 2010 |
Miura T, Hidaka K, Uemura T, Kashimoto K, Hori Y, Kawasaki Y, Ruben AJ, Freire E, Kimura T, Kiso Y. Improvement of both plasmepsin inhibitory activity and antimalarial activity by 2-aminoethylamino substitution. Bioorganic & Medicinal Chemistry Letters. 20: 4836-9. PMID 20634066 DOI: 10.1016/J.Bmcl.2010.06.099 |
0.748 |
|
| 2010 |
Barrila J, Gabelli SB, Bacha U, Amzel LM, Freire E. Mutation of Asn28 disrupts the dimerization and enzymatic activity of SARS 3CL(pro) . Biochemistry. 49: 4308-17. PMID 20420403 DOI: 10.1021/Bi1002585 |
0.783 |
|
| 2010 |
Brower ET, Schön A, Freire E. Naturally occurring variability in the envelope glycoprotein of HIV-1 and development of cell entry inhibitors. Biochemistry. 49: 2359-67. PMID 20166763 DOI: 10.1021/Bi1000933 |
0.802 |
|
| 2010 |
Ladbury JE, Klebe G, Freire E. Adding calorimetric data to decision making in lead discovery: a hot tip. Nature Reviews. Drug Discovery. 9: 23-7. PMID 19960014 DOI: 10.1038/Nrd3054 |
0.352 |
|
| 2009 |
Freire E. A thermodynamic approach to the affinity optimization of drug candidates. Chemical Biology & Drug Design. 74: 468-72. PMID 19793186 DOI: 10.1111/J.1747-0285.2009.00880.X |
0.38 |
|
| 2009 |
Ma C, Polishchuk AL, Ohigashi Y, Stouffer AL, Schön A, Magavern E, Jing X, Lear JD, Freire E, Lamb RA, DeGrado WF, Pinto LH. Identification of the functional core of the influenza A virus A/M2 proton-selective ion channel. Proceedings of the National Academy of Sciences of the United States of America. 106: 12283-8. PMID 19590009 DOI: 10.1073/Pnas.0905726106 |
0.323 |
|
| 2009 |
Regnier T, Sarma D, Hidaka K, Bacha U, Freire E, Hayashi Y, Kiso Y. New developments for the design, synthesis and biological evaluation of potent SARS-CoV 3CL(pro) inhibitors. Bioorganic & Medicinal Chemistry Letters. 19: 2722-7. PMID 19362479 DOI: 10.1016/J.Bmcl.2009.03.118 |
0.784 |
|
| 2009 |
Freire E, Schön A, Velazquez-Campoy A. Isothermal titration calorimetry: general formalism using binding polynomials. Methods in Enzymology. 455: 127-55. PMID 19289205 DOI: 10.1016/S0076-6879(08)04205-5 |
0.335 |
|
| 2009 |
Brower ET, Schön A, Klein JC, Freire E. Binding thermodynamics of the N-terminal peptide of the CCR5 coreceptor to HIV-1 envelope glycoprotein gp120. Biochemistry. 48: 779-85. PMID 19170639 DOI: 10.1021/Bi8021476 |
0.8 |
|
| 2009 |
Hidaka K, Kimura T, Ruben AJ, Uemura T, Kamiya M, Kiso A, Okamoto T, Tsuchiya Y, Hayashi Y, Freire E, Kiso Y. Erratum to “Antimalarial activity enhancement in hydroxymethylcarbonyl (HMC) isostere-based dipeptidomimetics targeting malarial aspartic protease plasmepsin” [Bioorg. Med. Chem. 16 (2008) 10049–10060] Bioorganic & Medicinal Chemistry. 17: 1772. DOI: 10.1016/J.Bmc.2008.10.094 |
0.732 |
|
| 2008 |
Madani N, Schön A, Princiotto AM, Lalonde JM, Courter JR, Soeta T, Ng D, Wang L, Brower ET, Xiang SH, Kwon YD, Huang CC, Wyatt R, Kwong PD, Freire E, et al. Small-molecule CD4 mimics interact with a highly conserved pocket on HIV-1 gp120. Structure (London, England : 1993). 16: 1689-701. PMID 19000821 DOI: 10.1016/J.Str.2008.09.005 |
0.773 |
|
| 2008 |
Hidaka K, Kimura T, Ruben AJ, Uemura T, Kamiya M, Kiso A, Okamoto T, Tsuchiya Y, Hayashi Y, Freire E, Kiso Y. Antimalarial activity enhancement in hydroxymethylcarbonyl (HMC) isostere-based dipeptidomimetics targeting malarial aspartic protease plasmepsin. Bioorganic & Medicinal Chemistry. 16: 10049-60. PMID 18952439 DOI: 10.1016/J.Bmc.2008.10.011 |
0.773 |
|
| 2008 |
Bacha U, Barrila J, Gabelli SB, Kiso Y, Mario Amzel L, Freire E. Development of broad-spectrum halomethyl ketone inhibitors against coronavirus main protease 3CL(pro). Chemical Biology & Drug Design. 72: 34-49. PMID 18611220 DOI: 10.1111/J.1747-0285.2008.00679.X |
0.784 |
|
| 2008 |
Gopi H, Umashankara M, Pirrone V, LaLonde J, Madani N, Tuzer F, Baxter S, Zentner I, Cocklin S, Jawanda N, Miller SR, Schön A, Klein JC, Freire E, Krebs FC, et al. Structural determinants for affinity enhancement of a dual antagonist peptide entry inhibitor of human immunodeficiency virus type-1 Journal of Medicinal Chemistry. 51: 2638-2647. PMID 18402432 DOI: 10.1021/Jm070814R |
0.315 |
|
| 2008 |
Brower ET, Bacha UM, Kawasaki Y, Freire E. Inhibition of HIV-2 protease by HIV-1 protease inhibitors in clinical use. Chemical Biology & Drug Design. 71: 298-305. PMID 18312292 DOI: 10.1111/J.1747-0285.2008.00647.X |
0.763 |
|
| 2007 |
Lafont V, Armstrong AA, Ohtaka H, Kiso Y, Mario Amzel L, Freire E. Compensating enthalpic and entropic changes hinder binding affinity optimization. Chemical Biology & Drug Design. 69: 413-22. PMID 17581235 DOI: 10.1111/J.1747-0285.2007.00519.X |
0.403 |
|
| 2007 |
Hidaka K, Kimura T, Tsuchiya Y, Kamiya M, Ruben AJ, Freire E, Hayashi Y, Kiso Y. Additional interaction of allophenylnorstatine-containing tripeptidomimetics with malarial aspartic protease plasmepsin II. Bioorganic & Medicinal Chemistry Letters. 17: 3048-52. PMID 17400453 DOI: 10.1016/J.Bmcl.2007.03.052 |
0.752 |
|
| 2007 |
Muzammil S, Armstrong AA, Kang LW, Jakalian A, Bonneau PR, Schmelmer V, Amzel LM, Freire E. Unique thermodynamic response of tipranavir to human immunodeficiency virus type 1 protease drug resistance mutations. Journal of Virology. 81: 5144-54. PMID 17360759 DOI: 10.1128/Jvi.02706-06 |
0.412 |
|
| 2007 |
Schön A, Freire E. Strategies for targeting HIV-1 envelope glycoprotein gp120 in the development of new antivirals Future Hiv Therapy. 1: 223-229. DOI: 10.2217/17469600.1.2.223 |
0.359 |
|
| 2006 |
Sydnes MO, Hayashi Y, Sharma VK, Hamada T, Bacha U, Barrila J, Freire E, Kiso Y. Synthesis of glutamic acid and glutamine peptides possessing a trifluoromethyl ketone group as SARS-CoV 3CL protease inhibitors. Tetrahedron. 62: 8601-8609. PMID 32287416 DOI: 10.1016/J.Tet.2006.06.052 |
0.754 |
|
| 2006 |
Velazquez-Campoy A, Freire E. Isothermal titration calorimetry to determine association constants for high-affinity ligands. Nature Protocols. 1: 186-91. PMID 17406231 DOI: 10.1038/Nprot.2006.28 |
0.338 |
|
| 2006 |
Barrila J, Bacha U, Freire E. Long-range cooperative interactions modulate dimerization in SARS 3CLpro. Biochemistry. 45: 14908-16. PMID 17154528 DOI: 10.1021/Bi0616302 |
0.783 |
|
| 2006 |
Cremades N, Sancho J, Freire E. The native-state ensemble of proteins provides clues for folding, misfolding and function. Trends in Biochemical Sciences. 31: 494-6. PMID 16870449 DOI: 10.1016/J.Tibs.2006.07.001 |
0.307 |
|
| 2006 |
Aguilar RC, Longhi SA, Shaw JD, Yeh LY, Kim S, Schön A, Freire E, Hsu A, McCormick WK, Watson HA, Wendland B. Epsin N-terminal homology domains perform an essential function regulating Cdc42 through binding Cdc42 GTPase-activating proteins. Proceedings of the National Academy of Sciences of the United States of America. 103: 4116-21. PMID 16537494 DOI: 10.1073/Pnas.0510513103 |
0.331 |
|
| 2006 |
Ruben AJ, Kiso Y, Freire E. Overcoming roadblocks in lead optimization: a thermodynamic perspective. Chemical Biology & Drug Design. 67: 2-4. PMID 16492143 DOI: 10.1111/J.1747-0285.2005.00314.X |
0.678 |
|
| 2005 |
Velázquez Campoy A, Freire E. ITC in the post-genomic era...? Priceless. Biophysical Chemistry. 115: 115-24. PMID 15752592 DOI: 10.1016/J.Bpc.2004.12.015 |
0.321 |
|
| 2005 |
Ohtaka H, Freire E. Adaptive inhibitors of the HIV-1 protease. Progress in Biophysics and Molecular Biology. 88: 193-208. PMID 15572155 DOI: 10.1016/J.Pbiomolbio.2004.07.005 |
0.372 |
|
| 2004 |
Freire E. Isothermal titration calorimetry: controlling binding forces in lead optimization. Drug Discovery Today. Technologies. 1: 295-9. PMID 24981498 DOI: 10.1016/J.Ddtec.2004.11.016 |
0.367 |
|
| 2004 |
Velázquez-Campoy A, Ohtaka H, Nezami A, Muzammil S, Freire E. Isothermal titration calorimetry. Current Protocols in Cell Biology / Editorial Board, Juan S. Bonifacino ... [Et Al.]. Unit 17.8. PMID 18228446 DOI: 10.1002/0471143030.Cb1708S23 |
0.777 |
|
| 2004 |
Abdel-Rahman HM, Kimura T, Hidaka K, Kiso A, Nezami A, Freire E, Hayashi Y, Kiso Y. Design of inhibitors against HIV, HTLV-I, and Plasmodium falciparum aspartic proteases. Biological Chemistry. 385: 1035-9. PMID 15576323 DOI: 10.1515/Bc.2004.134 |
0.796 |
|
| 2004 |
Kiso A, Hidaka K, Kimura T, Hayashi Y, Nezami A, Freire E, Kiso Y. Search for substrate-based inhibitors fitting the S2' space of malarial aspartic protease plasmepsin II. Journal of Peptide Science : An Official Publication of the European Peptide Society. 10: 641-7. PMID 15568678 DOI: 10.1002/Psc.609 |
0.783 |
|
| 2004 |
Ohtaka H, Muzammil S, Schön A, Velazquez-Campoy A, Vega S, Freire E. Thermodynamic rules for the design of high affinity HIV-1 protease inhibitors with adaptability to mutations and high selectivity towards unwanted targets. The International Journal of Biochemistry & Cell Biology. 36: 1787-99. PMID 15183345 DOI: 10.1016/j.biocel.2004.02.021 |
0.306 |
|
| 2004 |
Bacha U, Barrila J, Velazquez-Campoy A, Leavitt SA, Freire E. Identification of novel inhibitors of the SARS coronavirus main protease 3CLpro. Biochemistry. 43: 4906-12. PMID 15109248 DOI: 10.1021/Bi0361766 |
0.786 |
|
| 2004 |
Vega S, Kang LW, Velazquez-Campoy A, Kiso Y, Amzel LM, Freire E. A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease. Proteins. 55: 594-602. PMID 15103623 DOI: 10.1002/Prot.20069 |
0.434 |
|
| 2004 |
Velazquez-Campoy A, Leavitt SA, Freire E. Characterization of protein-protein interactions by isothermal titration calorimetry. Methods in Molecular Biology (Clifton, N.J.). 261: 35-54. PMID 15064448 DOI: 10.1385/1-59259-762-9:035 |
0.67 |
|
| 2004 |
Leavitt SA, SchOn A, Klein JC, Manjappara U, Chaiken IM, Freire E. Interactions of HIV-1 proteins gp120 and Nef with cellular partners define a novel allosteric paradigm. Current Protein & Peptide Science. 5: 1-8. PMID 14965316 DOI: 10.2174/1389203043486955 |
0.719 |
|
| 2003 |
Velazquez-Campoy A, Muzammil S, Ohtaka H, Schön A, Vega S, Freire E. Structural and thermodynamic basis of resistance to HIV-1 protease inhibition: implications for inhibitor design. Current Drug Targets. Infectious Disorders. 3: 311-28. PMID 14754432 DOI: 10.2174/1568005033481051 |
0.315 |
|
| 2003 |
Ohtaka H, Schön A, Freire E. Multidrug resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations. Biochemistry. 42: 13659-66. PMID 14622012 DOI: 10.1021/Bi0350405 |
0.37 |
|
| 2003 |
Velázquez-Campoy A, Vega S, Fleming E, Bacha U, Sayed Y, Dirr HW, Freire E. Protease inhibition in African subtypes of HIV-1. Aids Reviews. 5: 165-71. PMID 14598565 |
0.784 |
|
| 2003 |
Schön A, del Mar Ingaramo M, Freire E. The binding of HIV-1 protease inhibitors to human serum proteins. Biophysical Chemistry. 105: 221-30. PMID 14499894 DOI: 10.1016/S0301-4622(03)00071-1 |
0.448 |
|
| 2003 |
Nezami A, Kimura T, Hidaka K, Kiso A, Liu J, Kiso Y, Goldberg DE, Freire E. High-affinity inhibition of a family of Plasmodium falciparum proteases by a designed adaptive inhibitor. Biochemistry. 42: 8459-64. PMID 12859191 DOI: 10.1021/Bi034131Z |
0.8 |
|
| 2003 |
Muzammil S, Ross P, Freire E. A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance. Biochemistry. 42: 631-8. PMID 12534275 DOI: 10.1021/Bi027019U |
0.386 |
|
| 2002 |
Kwong PD, Doyle ML, Casper DJ, Cicala C, Leavitt SA, Majeed S, Steenbeke TD, Venturi M, Chaiken I, Fung M, Katinger H, Parren PWIH, Robinson J, Van Ryk D, Wang L, ... ... Freire E, et al. HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites Nature. 420: 678-682. PMID 12478295 DOI: 10.1038/Nature01188 |
0.681 |
|
| 2002 |
Nezami A, Freire E. The integration of genomic and structural information in the development of high affinity plasmepsin inhibitors. International Journal For Parasitology. 32: 1669-76. PMID 12435452 DOI: 10.1016/S0020-7519(02)00196-0 |
0.796 |
|
| 2002 |
Ohtaka H, Velázquez-Campoy A, Xie D, Freire E. Overcoming drug resistance in HIV-1 chemotherapy: the binding thermodynamics of Amprenavir and TMC-126 to wild-type and drug-resistant mutants of the HIV-1 protease. Protein Science : a Publication of the Protein Society. 11: 1908-16. PMID 12142445 DOI: 10.1110/Ps.0206402 |
0.404 |
|
| 2002 |
Dowd CS, Leavitt S, Babcock G, Godillot AP, Van Ryk D, Canziani GA, Sodroski J, Freire E, Chaiken IM. Beta-turn Phe in HIV-1 Env binding site of CD4 and CD4 mimetic miniprotein enhances Env binding affinity but is not required for activation of co-receptor/17b site. Biochemistry. 41: 7038-46. PMID 12033937 DOI: 10.1021/Bi012168I |
0.685 |
|
| 2002 |
Luque I, Leavitt SA, Freire E. The linkage between protein folding and functional cooperativity: two sides of the same coin? Annual Review of Biophysics and Biomolecular Structure. 31: 235-56. PMID 11988469 DOI: 10.1146/Annurev.Biophys.31.082901.134215 |
0.697 |
|
| 2002 |
Nezami A, Luque I, Kimura T, Kiso Y, Freire E. Identification and characterization of allophenylnorstatine-based inhibitors of plasmepsin II, an antimalarial target. Biochemistry. 41: 2273-80. PMID 11841219 DOI: 10.1021/Bi0117549 |
0.79 |
|
| 2001 |
Leavitt S, Freire E. Direct measurement of protein binding energetics by isothermal titration calorimetry Current Opinion in Structural Biology. 11: 560-566. PMID 11785756 DOI: 10.1016/S0959-440X(00)00248-7 |
0.708 |
|
| 2001 |
Velazquez-Campoy A, Kiso Y, Freire E. The binding energetics of first- and second-generation HIV-1 protease inhibitors: implications for drug design. Archives of Biochemistry and Biophysics. 390: 169-175. PMID 11396919 DOI: 10.1006/Abbi.2001.2333 |
0.431 |
|
| 2001 |
Velazquez-Campoy A, Luque I, Freire E. The Use of Isothermal Titration Calorimetry in Drug Design:Applications to High Affinity Binding and Protonation / Deprotonation Coupling (特集 滴定カロリメトリー(1)) Netsu Sokutei. 28: 68-73. DOI: 10.11311/Jscta1974.28.68 |
0.316 |
|
| 2000 |
Velazquez-Campoy A, Luque I, Todd MJ, Milutinovich M, Kiso Y, Freire E. Thermodynamic dissection of the binding energetics of KNI-272, a potent HIV-1 protease inhibitor. Protein Science. 9: 1801-1809. PMID 11045625 DOI: 10.1110/Ps.9.9.1801 |
0.429 |
|
| 2000 |
D'Aquino JA, Freire E, Amzel LM. Binding of small organic molecules to macromolecular targets: evaluation of conformational entropy changes. Proteins. 93-107. PMID 11013404 DOI: 10.1002/1097-0134(2000)41:4+<93::Aid-Prot90>3.0.Co;2-0 |
0.354 |
|
| 2000 |
Todd MJ, Luque I, Velázquez-Campoy aA, Freire E. Thermodynamic basis of resistance to HIV-1 protease inhibition: calorimetric analysis of the V82F/I84V active site resistant mutant. Biochemistry. 39: 11876-11883. PMID 11009599 DOI: 10.1021/Bi001013S |
0.432 |
|
| 2000 |
Velazquez-Campoy A, Todd MJ, Freire E. HIV-1 protease inhibitors: enthalpic versus entropic optimization of the binding affinity. Biochemistry. 39: 2201-2207. PMID 10694385 DOI: 10.1021/Bi992399D |
0.422 |
|
| 1999 |
Sadqi M, Casares S, Abril MA, López-Mayorga O, Conejero-Lara F, Freire E. The native state conformational ensemble of the SH3 domain from alpha-spectrin. Biochemistry. 38: 8899-906. PMID 10413463 DOI: 10.1021/Bi990413G |
0.329 |
|
| 1998 |
Todd MJ, Semo N, Freire E. The structural stability of the HIV-1 protease Journal of Molecular Biology. 283: 475-488. PMID 9769219 DOI: 10.1006/Jmbi.1998.2090 |
0.391 |
|
| 1998 |
Milstein SJ, Leipold H, Sarubbi D, Leone-Bay A, Mlynek GM, Robinson JR, Kasimova M, Freire E. Partially unfolded proteins efficiently penetrate cell membranes--implications for oral drug delivery. Journal of Controlled Release : Official Journal of the Controlled Release Society. 53: 259-67. PMID 9741933 DOI: 10.1016/S0168-3659(97)00259-9 |
0.344 |
|
| 1998 |
Gómez J, Semo N, Freire E. Structural Thermodynamic Study of the Binding of Renin Inhibitors to Endothiapepsin Advances in Experimental Medicine and Biology. 436: 325-328. PMID 9561236 DOI: 10.1007/978-1-4615-5373-1_44 |
0.387 |
|
| 1998 |
Kasimova MR, Milstein SJ, Freire E. The conformational equilibrium of human growth hormone. Journal of Molecular Biology. 277: 409-18. PMID 9514759 DOI: 10.1006/Jmbi.1997.1613 |
0.344 |
|
| 1998 |
Luque I, Gómez J, Semo N, Freire E. Structure-based thermodynamic design of peptide ligands: application to peptide inhibitors of the aspartic protease endothiapepsin. Proteins. 30: 74-85. PMID 9443342 DOI: 10.1002/(Sici)1097-0134(199801)30:1<74::Aid-Prot7>3.0.Co;2-L |
0.367 |
|
| 1997 |
Bardi JS, Luque I, Freire E. Structure-Based Thermodynamic Analysis of HIV-1 Protease Inhibitors† Biochemistry. 36: 6588-6596. PMID 9184138 DOI: 10.1021/Bi9701742 |
0.405 |
|
| 1997 |
Hilser VJ, Freire E. Predicting the equilibrium protein folding pathway: Structure-based analysis of staphylococcal nuclease Proteins: Structure, Function and Genetics. 27: 171-183. PMID 9061781 DOI: 10.1002/(Sici)1097-0134(199702)27:2<171::Aid-Prot3>3.0.Co;2-J |
0.609 |
|
| 1997 |
Freire E. Thermodynamics of protein folding and molecular recognition Pure and Applied Chemistry. 69: 2253-2262. DOI: 10.1351/Pac199769112253 |
0.331 |
|
| 1997 |
Hilser VJ, Freire E. The equilibrium ensemble of conformational states in staphylococcal nuclease Techniques in Protein Chemistry. 8: 767-781. DOI: 10.1016/S1080-8914(97)80075-0 |
0.609 |
|
| 1996 |
Hilser VJ, Gómez J, Freire E. The enthalpy change in protein folding and binding: Refinement of parameters for structure-based calculations Proteins: Structure, Function and Genetics. 26: 123-133. PMID 8916220 DOI: 10.1002/(Sici)1097-0134(199610)26:2<123::Aid-Prot2>3.0.Co;2-H |
0.625 |
|
| 1996 |
D'Aquino JA, Gómez J, Hilser VJ, Lee KH, Amzel LM, Freire E. The magnitude of the backbone conformational entropy change in protein folding. Proteins. 25: 143-56. PMID 8811731 DOI: 10.1002/(Sici)1097-0134(199606)25:2<143::Aid-Prot1>3.0.Co;2-J |
0.623 |
|
| 1995 |
Murphy KP, Freire E. Thermodynamic strategies for rational protein and drug design Pharmaceutical Biotechnology. 7: 219-241. PMID 8564019 DOI: 10.1007/978-1-4899-1079-0_6 |
0.326 |
|
| 1995 |
Kenar KT, Garcia-Moreno B, Freire E. A calorimetric characterization of the salt dependence of the stability of the GCN4 leucine zipper Protein Science. 4: 1934-1938. PMID 8528092 DOI: 10.1002/Pro.5560040929 |
0.309 |
|
| 1995 |
Karantza V, Baxevanis AD, Freire E, Moudrianakis EN. Thermodynamic studies of the core histones: Ionic strength and pH dependence of H2A-H2B dimer stability Biochemistry. 34: 5988-5996. PMID 7727455 DOI: 10.1021/Bi00017A028 |
0.302 |
|
| 1995 |
Johnson CR, Morin PE, Arrowsmith CH, Freire E. Thermodynamic analysis of the structural stability of the tetrameric oligomerization domain of p53 tumor suppressor Biochemistry. 34: 5309-5316. PMID 7727392 DOI: 10.1021/Bi00016A002 |
0.339 |
|
| 1995 |
Griko YV, Freire E, Privalov G, van Dael H, Privalov PL. The unfolding thermodynamics of c-type lysozymes: a calorimetric study of the heat denaturation of equine lysozyme. Journal of Molecular Biology. 252: 447-59. PMID 7563064 DOI: 10.1006/Jmbi.1995.0510 |
0.309 |
|
| 1995 |
Gomez J, Hilser VJ, Xie D, Freire E. The heat capacity of proteins Proteins: Structure, Function and Genetics. 22: 404-412. PMID 7479713 DOI: 10.1002/Prot.340220410 |
0.602 |
|
| 1994 |
Haynie DT, Freire E. Thermodynamic strategies for stabilizing intermediate states of proteins Biopolymers. 34: 261-271. PMID 8142592 DOI: 10.1002/Bip.360340212 |
0.314 |
|
| 1994 |
Xie D, Freire E. Structure based prediction of protein folding intermediates Journal of Molecular Biology. 242: 62-80. PMID 8078072 DOI: 10.1006/Jmbi.1994.1557 |
0.348 |
|
| 1994 |
Haltia T, Semo N, Arrondo JLR, Goni FM, Freire E. Thermodynamic and structural stability of cytochrome c oxidase from Paracoccus denitrificans. Biochemistry. 33: 9731-9740. PMID 8068652 DOI: 10.1021/Bi00198A044 |
0.328 |
|
| 1994 |
Xie D, Freire E. Molecular basis of cooperativity in protein folding. V. Thermodynamic and structural conditions for the stabilization of compact denatured states Proteins: Structure, Function and Genetics. 19: 291-301. PMID 7984625 DOI: 10.1002/Prot.340190404 |
0.316 |
|
| 1994 |
Freire E, Xie D. Thermodynamic prediction of structural determinants of the molten globule state of barnase Biophysical Chemistry. 51: 243-251. PMID 7919035 DOI: 10.1016/0301-4622(94)00045-X |
0.325 |
|
| 1994 |
Lee KH, Xie D, Freire E, Amzel LM. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation. Proteins. 20: 68-84. PMID 7824524 DOI: 10.1002/Prot.340200108 |
0.328 |
|
| 1994 |
Freire E. Statistical thermodynamic analysis of differential scanning calorimetry data: structural deconvolution of heat capacity function of proteins. Methods in Enzymology. 240: 502-530. PMID 7823846 DOI: 10.1016/S0076-6879(94)40062-8 |
0.32 |
|
| 1994 |
Xie D, Fox R, Freire E. Thermodynamic characterization of an equilibrium folding intermediate of staphylococcal nuclease Protein Science. 3: 2175-2184. PMID 7756977 DOI: 10.1002/Pro.5560031203 |
0.327 |
|
| 1993 |
Freire E. Structural Thermodynamics: Prediction of Protein Stability and Protein Binding Affinities Archives of Biochemistry and Biophysics. 303: 181-184. PMID 8512307 DOI: 10.1006/Abbi.1993.1271 |
0.327 |
|
| 1993 |
Thompson KS, Vinson CR, Freire E. Thermodynamic characterization of the structural stability of the coiled-coil region of the bZIP transcription factor GCN4. Biochemistry. 32: 5491-6. PMID 8504069 DOI: 10.1021/Bi00072A001 |
0.331 |
|
| 1993 |
Murphy KP, Xie D, Garcia KC, Amzel LM, Freire E. Structural energetics of peptide recognition: Angiotensin II/antibody binding Proteins: Structure, Function and Genetics. 15: 113-120. PMID 8441749 DOI: 10.1002/Prot.340150203 |
0.366 |
|
| 1993 |
Haynie DT, Freire E. Structural energetics of the molten globule state Proteins: Structure, Function and Genetics. 16: 115-140. PMID 8332604 DOI: 10.1002/Prot.340160202 |
0.329 |
|
| 1993 |
Xie D, Bhakuni V, Freire E. Are the molten globule and the unfolded states of apo-alpha-lactalbumin enthalpically equivalent? Journal of Molecular Biology. 232: 5-8. PMID 8331670 DOI: 10.1006/Jmbi.1993.1364 |
0.634 |
|
| 1993 |
Freire E, Haynie DT, Xie D. Molecular basis of cooperativity in protein folding IV. CORE: A general cooperative folding model Proteins: Structure, Function and Genetics. 17: 111-123. PMID 8265560 DOI: 10.1002/Prot.340170202 |
0.321 |
|
| 1993 |
Bains G, Lee RT, Lee YC, Freire E. Microcalorimetric study of wheat germ agglutinin binding to N-acetylglucosamine and its oligomers. Biochemistry. 31: 12624-8. PMID 1472499 DOI: 10.1021/Bi00165A012 |
0.353 |
|
| 1993 |
Murphy KP, Freire E. Structural energetics of protein stability and folding cooperativity Pure and Applied Chemistry. 65: 1939-1946. DOI: 10.1351/Pac199365091939 |
0.337 |
|
| 1992 |
Murphy KP, Freire E. Thermodynamics of structural stability and cooperative folding behavior in proteins Advances in Protein Chemistry. 43: 313-361. PMID 1442323 DOI: 10.1016/S0065-3233(08)60556-2 |
0.329 |
|
| 1992 |
Straume M, Freire E. Two-dimensional differential scanning calorimetry: simultaneous resolution of intrinsic protein structural energetics and ligand binding interactions by global linkage analysis. Analytical Biochemistry. 203: 259-268. PMID 1416022 DOI: 10.1016/0003-2697(92)90311-T |
0.34 |
|
| 1991 |
Bhakuni V, Xie D, Freire E. Thermodynamic identification of stable folding intermediates in the B-subunit of cholera toxin Biochemistry. 30: 5055-5060. PMID 2036374 DOI: 10.1021/Bi00234A031 |
0.641 |
|
| 1991 |
Xie D, Bhakuni V, Freire E. Calorimetric determination of the energetics of the molten globule intermediate in protein folding: Apo-.α-lactalbumin Biochemistry. 30: 10673-10678. PMID 1931986 DOI: 10.1021/Bi00108A010 |
0.669 |
|
| 1990 |
Ramsay G, Freire E. Linked thermal and solute perturbation analysis of cooperative domain interactions in proteins. Structural stability of diphtheria toxin. Biochemistry. 29: 8677-83. PMID 2271548 DOI: 10.1021/Bi00489A024 |
0.317 |
|
| 1990 |
Morin PE, Diggs D, Freire E. Thermal stability of membrane-reconstituted yeast cytochrome c oxidase. Biochemistry. 29: 781-788. PMID 2159790 DOI: 10.1021/Bi00455A028 |
0.307 |
|
| 1981 |
Anthony FH, Biltonen RL, Freire E. Modification of a vibrating-tube density meter for precise temperature scanning Analytical Biochemistry. 116: 161-167. PMID 7304976 DOI: 10.1016/0003-2697(81)90339-0 |
0.554 |
|
| 1980 |
Biltonen RL, Freire E. Statistical thermodynamic analysis of the excess heat capacity function of macromolecular systems Pure and Applied Chemistry. 52: 419-431. DOI: 10.1351/Pac198052020419 |
0.507 |
|
| 1979 |
Freire E, Biltonen R. Estimation of molecular averages and equilibrium fluctuations in lipid bilayer systems from the excess heat capacity function. Biochimica Et Biophysica Acta. 514: 54-68. PMID 581474 DOI: 10.1016/0005-2736(78)90076-7 |
0.559 |
|
| 1978 |
Freire E, Biltonen RL. Thermodynamics of transfer ribonucleic acids: The effect of sodium on the thermal unfolding of yeast tRNAPhe Biopolymers. 17: 1257-1272. PMID 247996 DOI: 10.1002/Bip.1978.360170512 |
0.588 |
|
| 1978 |
Biltonen RL, Freire E, Brandts JF. Thermodynamic Characterization of Conformational States of Biological Macromolecules Using Differential Scanning Calorimetry Critical Reviews in Biotechnology. 5: 85-124. DOI: 10.3109/07388557809148191 |
0.578 |
|
| 1978 |
Freire E, Biltonen RL. Statistical mechanical deconvolution of thermal transitions in macromolecules. III. Application to double‐stranded to single‐stranded transitions of nucleic acids Biopolymers. 17: 497-510. DOI: 10.1002/Bip.1978.360170214 |
0.578 |
|
| 1978 |
Freire E, Biltonen RL. Statistical mechanical deconvolution of thermal transitions in macromolecules. II. General treatment of cooperative phenomena Biopolymers. 17: 481-496. DOI: 10.1002/Bip.1978.360170213 |
0.569 |
|
| 1978 |
Freire E, Biltonen RL. Statistical mechanical deconvolution of thermal transitions in macromolecules. I. Theory and application to homogeneous systems Biopolymers. 17: 463-479. DOI: 10.1002/Bip.1978.360170212 |
0.576 |
|
| 1976 |
Mountcastle DB, Freire E, Biltonen RL. Generation of continuous ligand–macromolecule binding isotherms. Use of exponential concentration gradients Biopolymers. 15: 355-371. DOI: 10.1002/Bip.1976.360150212 |
0.549 |
|
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