Valentin Gogonea - Publications

Affiliations: 
Cleveland State University, Cleveland, OH, United States 
Area:
Physical Chemistry

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Roberts AB, Gu X, Buffa JA, Hurd AG, Wang Z, Zhu W, Gupta N, Skye SM, Cody DB, Levison BS, Barrington WT, Russell MW, Reed JM, Duzan A, Lang JM, ... ... Gogonea V, et al. Development of a gut microbe-targeted nonlethal therapeutic to inhibit thrombosis potential. Nature Medicine. PMID 30082863 DOI: 10.1038/s41591-018-0128-1  0.56
2018 Halawani D, Gogonea V, DiDonato JA, Pipich V, Yao P, China A, Topbas C, Vasu K, Arif A, Hazen SL, Fox PL. Structural control of caspase-generated glutamyl-tRNA synthetase by appended noncatalytic WHEP domains. The Journal of Biological Chemistry. PMID 29643180 DOI: 10.1074/jbc.M117.807503  0.56
2017 Li XS, Obeid S, Klingenberg R, Gencer B, Mach F, Räber L, Windecker S, Rodondi N, Nanchen D, Muller O, Miranda MX, Matter CM, Wu Y, Li L, Wang Z, ... ... Gogonea V, et al. Gut microbiota-dependent trimethylamine N-oxide in acute coronary syndromes: a prognostic marker for incident cardiovascular events beyond traditional risk factors. European Heart Journal. PMID 28077467 DOI: 10.1093/eurheartj/ehw582  0.56
2017 Lin H, Levison BS, Buffa JA, Huang Y, Fu X, Wang Z, Gogonea V, DiDonato JA, Hazen SL. Myeloperoxidase-mediated protein lysine oxidation generates 2-aminoadipic acid and lysine nitrile in vivo. Free Radical Biology & Medicine. PMID 28069522 DOI: 10.1016/j.freeradbiomed.2017.01.006  0.56
2016 Gu X, Wu Z, Huang Y, Wagner MA, Baleanu-Gogonea C, Mehl RA, Buffa JA, DiDonato AJ, Hazen LB, Fox PL, Gogonea V, Parks JS, DiDonato JA, Hazen SL. A systematic investigation of structure/function requirements for the apolipoprotein A-I - lecithin cholesterol acyltransferase interaction loop of HDL. The Journal of Biological Chemistry. PMID 26797122 DOI: 10.1074/jbc.M115.696088  1
2015 Gogonea V. Structural Insights into High Density Lipoprotein: Old Models and New Facts. Frontiers in Pharmacology. 6: 318. PMID 26793109 DOI: 10.3389/fphar.2015.00318  1
2015 Gu X, Huang Y, Levison BS, Gerstenecker G, DiDonato AJ, Hazen LB, Lee J, Gogonea V, DiDonato JA, Hazen SL. Identification of critical paraoxonase 1 residues involved in high density lipoprotein interaction. The Journal of Biological Chemistry. PMID 26567339 DOI: 10.1074/jbc.M115.678334  1
2014 DiDonato JA, Aulak K, Huang Y, Wagner M, Gerstenecker G, Topbas C, Gogonea V, DiDonato AJ, Tang WH, Mehl RA, Fox PL, Plow EF, Smith JD, Fisher EA, Hazen SL. Site-specific nitration of apolipoprotein A-I at tyrosine 166 is both abundant within human atherosclerotic plaque and dysfunctional. The Journal of Biological Chemistry. 289: 10276-92. PMID 24558038 DOI: 10.1074/jbc.M114.556506  1
2014 Huang Y, DiDonato JA, Levison BS, Schmitt D, Li L, Wu Y, Buffa J, Kim T, Gerstenecker GS, Gu X, Kadiyala CS, Wang Z, Culley MK, Hazen JE, Didonato AJ, ... ... Gogonea V, et al. An abundant dysfunctional apolipoprotein A1 in human atheroma. Nature Medicine. 20: 193-203. PMID 24464187 DOI: 10.1038/nm.3459  1
2013 DiDonato JA, Huang Y, Aulak KS, Even-Or O, Gerstenecker G, Gogonea V, Wu Y, Fox PL, Tang WH, Plow EF, Smith JD, Fisher EA, Hazen SL. Function and distribution of apolipoprotein A1 in the artery wall are markedly distinct from those in plasma. Circulation. 128: 1644-55. PMID 23969698 DOI: 10.1161/CIRCULATIONAHA.113.002624  1
2013 Huang Y, Wu Z, Riwanto M, Gao S, Levison BS, Gu X, Fu X, Wagner MA, Besler C, Gerstenecker G, Zhang R, Li XM, DiDonato AJ, Gogonea V, Tang WH, et al. Myeloperoxidase, paraoxonase-1, and HDL form a functional ternary complex. The Journal of Clinical Investigation. 123: 3815-28. PMID 23908111 DOI: 10.1172/JCI67478  1
2013 Gogonea V, Gerstenecker GS, Wu Z, Lee X, Topbas C, Wagner MA, Tallant TC, Smith JD, Callow P, Pipich V, Malet H, Schoehn G, DiDonato JA, Hazen SL. The low-resolution structure of nHDL reconstituted with DMPC with and without cholesterol reveals a mechanism for particle expansion. Journal of Lipid Research. 54: 966-83. PMID 23349207 DOI: 10.1194/jlr.M032763  1
2011 Wu Z, Gogonea V, Lee X, May RP, Pipich V, Wagner MA, Undurti A, Tallant TC, Baleanu-Gogonea C, Charlton F, Ioffe A, DiDonato JA, Rye KA, Hazen SL. The low resolution structure of ApoA1 in spherical high density lipoprotein revealed by small angle neutron scattering. The Journal of Biological Chemistry. 286: 12495-508. PMID 21292766 DOI: 10.1074/jbc.M110.209130  1
2010 Motiu S, Gogonea V. [Fe-Fe]-hydrogenase Reactivated by Residue Mutations as Bridging Carbonyl Rearranges: A QM/MM Study. International Journal of Quantum Chemistry. 110: 2705-2718. PMID 26045628 DOI: 10.1002/qua.22381  1
2010 Gogonea V, Wu Z, Lee X, Pipich V, Li XM, Ioffe AI, Didonato JA, Hazen SL. Congruency between biophysical data from multiple platforms and molecular dynamics simulation of the double-super helix model of nascent high-density lipoprotein. Biochemistry. 49: 7323-43. PMID 20687589 DOI: 10.1021/bi100588a  1
2009 Dogaru D, Motiu S, Gogonea V. Residue Mutations in [Fe-Fe]-hydrogenase Impedes O(2) Binding: A QM/MM Investigation. International Journal of Quantum Chemistry. 110: 1784-1792. PMID 20485511 DOI: 10.1002/qua.22331  1
2009 Dogaru D, Motiu S, Gogonea V. Inactivation of [Fe-Fe]-Hydrogenase by O(2). Thermodynamics and Frontier Molecular Orbitals Analyses. International Journal of Quantum Chemistry. 109: 876-889. PMID 20160838 DOI: 10.1002/qua.21875  1
2009 Wu Z, Gogonea V, Lee X, Wagner MA, Li XM, Huang Y, Undurti A, May RP, Haertlein M, Moulin M, Gutsche I, Zaccai G, Didonato JA, Hazen SL. Double superhelix model of high density lipoprotein. The Journal of Biological Chemistry. 284: 36605-19. PMID 19812036 DOI: 10.1074/jbc.M109.039537  1
2008 Biswas PK, Gogonea V. A polarizable force-field model for quantum-mechanical-molecular-mechanical Hamiltonian using expansion of point charges into orbitals. The Journal of Chemical Physics. 129: 154108. PMID 19045177 DOI: 10.1063/1.2992527  1
2008 Wu Z, Wagner MA, Zheng L, Parks JS, Shy JM, Smith JD, Gogonea V, Hazen SL. Corrigendum: The refined structure of nascent HDL reveals a key functional domain for particle maturation and dysfunction (Nature Structural and Molecular Biology (2007) 14, (861-868)) Nature Structural and Molecular Biology. 15: 651. DOI: 10.1038/nsmb0608-651b  1
2007 Wu Z, Wagner MA, Zheng L, Parks JS, Shy JM, Smith JD, Gogonea V, Hazen SL. The refined structure of nascent HDL reveals a key functional domain for particle maturation and dysfunction. Nature Structural & Molecular Biology. 14: 861-8. PMID 17676061 DOI: 10.1038/nsmb1284  1
2007 Motiu S, Dogaru D, Gogonea V. Reactivation pathway of the hydrogenase H-cluster: Density functional theory study International Journal of Quantum Chemistry. 107: 1248-1252. DOI: 10.1002/qua.21236  1
2006 Gogonea V, Shy JM, Biswas PK. Electronic structure, ionization potential, and electron affinity of the enzyme cofactor (6R)-5,6,7,8-tetrahydrobiopterin in the gas phase, solution, and protein environments. The Journal of Physical Chemistry. B. 110: 22861-71. PMID 17092038 DOI: 10.1021/jp061653q  1
2006 Biswas PK, Niu J, Frederico T, Gogonea V. Numerical simulation and graphical analysis of in vitro benign tumor growth: application of single-particle state bosonic matter equation with length scaling. Journal of Molecular Modeling. 12: 641-8. PMID 16555065 DOI: 10.1007/s00894-005-0095-6  1
2005 Biswas PK, Gogonea V. A regularized and renormalized electrostatic coupling Hamiltonian for hybrid quantum-mechanical-molecular-mechanical calculations Journal of Chemical Physics. 123. PMID 16268688 DOI: 10.1063/1.2064907  1
2005 Orban T, Kalafatis M, Gogonea V. Completed three-dimensional model of human coagulation factor va. Molecular dynamics simulations and structural analyses. Biochemistry. 44: 13082-90. PMID 16185076 DOI: 10.1021/bi050891t  1
2005 Gogonea V. Potential energy surface of the reaction of imidazole with peroxynitrite: Density functional theory study International Journal of Quantum Chemistry. 104: 342-353. DOI: 10.1002/qua.20603  1
2001 Gogonea V, Suárez D, Van der Vaart A, Merz J. New developments in applying quantum mechanics to proteins Current Opinion in Structural Biology. 11: 217-223. PMID 11297931 DOI: 10.1016/S0959-440X(00)00193-7  1
2001 Ciubotariu D, Grozav A, Gogonea V, Ciubotariu C, Medeleanu M, Dragoş D, Pasere M, Simon Z. The effects of retinoids upon epithelial differentiation of hamster trachea, induction of ornithine decarboxylase and promotion of tumors in mouse epidermis. A qsar study by MTD method Match. 44: 65-92.  1
2000 Gogonea V, Ciubotariu D, Baleanu-Gogonea C, Ciubotariu C. Calculation of octanol/water partition coefficients using a quantum mechanical - Continuum solvent model for solvation Match. 41: 107-115.  1
2000 Van Der Vaart A, Gogonea V, Dixon SL, Merz KM. Linear Scaling Molecular Orbital Calculations of Biological Systems Using the Semiempirical Divide and Conquer Method Journal of Computational Chemistry. 21: 1494-1504.  1
2000 Gogonea V, Westerhoff LM, Merz KM. Quantum mechanical/quantum mechanical methods. I. A divide and conquer strategy for solving the Schrödinger equation for large molecular systems using a composite density functional-semiempirical Hamiltonian Journal of Chemical Physics. 113: 5604-5613.  1
2000 Gogonea V, Merz KM. Charge Flow between Ions and a Dielectric Continuum. 2. Variational Method for Distributing Charge into the Dielectric Journal of Physical Chemistry B. 104: 2117-2122.  1
2000 Gogonea V, Merz KM. A quantum mechanical-Poisson-Boltzmann equation approach for studying charge flow between ions and a dielectric continuum Journal of Chemical Physics. 112: 3227-3235.  1
1999 Gogonea CB, Gogonea V, Ali YM, Merz KM, Siddiqui SS. Computational prediction of the three-dimensional structures for the Caenorhabditis elegans tubulin family. Journal of Molecular Graphics & Modelling. 17: 90-100, 126-30. PMID 10680114  1
1999 Gogonea V, Merz KM. Fully Quantum Mechanical Description of Proteins in Solution. Combining Linear Scaling Quantum Mechanical Methodologies with the Poisson-Boltzmann Equation Journal of Physical Chemistry A. 103: 5171-5188.  1
1998 Mauksch M, Gogonea V, Jiao H, Von Ragué Schleyer P. Monocyclic (CH)9+ - A heilbronner mobius aromatic system revealed Angewandte Chemie - International Edition. 37: 2395-2397. DOI: 10.1002/(SICI)1521-3773(19980918)37:17<2395::AID-ANIE2395>3.0.CO;2-W  1
1998 Gogonea V, Von Ragué Schleyer P, Schreiner PR. Consequences of triplet aromaticity in 4nπ-electron annulenes: Calculation of magnetic shieldings for open-shell species Angewandte Chemie - International Edition. 37: 1945-1948.  1
1998 Gogonea V, Bãleanu-Gogonea C, Osawa E. Solvent hard sphere diameter from van der Waals volume A statistical analysis of computed and solubility determined solvent diameters Journal of Molecular Structure: Theochem. 432: 177-189.  1
1995 Gogonea V, Ōsawa E. An improved algorithm for the analytical computation of solvent‐excluded volume. The treatment of singularities in solvent‐accessible surface area and volume functions Journal of Computational Chemistry. 16: 817-842. DOI: 10.1002/jcc.540160703  1
1994 Gogonea V, Osawa E. Implementation of the solvent effect in molecular mechanics. 1. Model development and analytical algorithm for the solvent-accessible surface area Supramolecular Chemistry. 3: 303-317. DOI: 10.1080/10610279408034930  1
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