David E. Wemmer - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
Biophysical Chemistry: Proteins, Nucleic Acids, NMR Spectroscopy
Website:
http://www.cchem.berkeley.edu/wemmer/people/dave.html

217 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Klass SH, Truxal AE, Fiala TA, Kelly J, Nguyen D, Finbloom JA, Wemmer DE, Pines A, Francis MB. Rotaxane probes for the detection of hydrogen peroxide by 129Xe hyperCEST NMR. Angewandte Chemie (International Ed. in English). PMID 31004389 DOI: 10.1002/anie.201903045  0.92
2019 Truxal A, Wemmer DE, Cao L, Isaacs L, Pines A. Directly functionalized cucurbit[7]uril as a biosensor for the selective detection of protein interactions by 129Xe hyperCEST NMR. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 30868660 DOI: 10.1002/chem.201900610  0.92
2019 Roe LT, Pelton JG, Edison JR, Butterfoss GL, Tresca BW, LaFaye BA, Whitelam S, Wemmer DE, Zuckermann RN. Unconstrained peptoid tetramer exhibits a predominant conformation in aqueous solution. Biopolymers. e23267. PMID 30835821 DOI: 10.1002/bip.23267  0.68
2017 Slack CC, Finbloom JA, Jeong K, Bruns CJ, Wemmer DE, Pines A, Francis MB. Rotaxane probes for protease detection by (129)Xe hyperCEST NMR. Chemical Communications (Cambridge, England). PMID 28044166 DOI: 10.1039/c6cc09302g  0.92
2016 Lim KH, Dasari AK, Hung IF, Gan Z, Kelly JW, Wright PE, Wemmer DE. Solid-State NMR Studies Reveal Native-like β-sheet Structures in Transthyretin amyloid. Biochemistry. PMID 27589034 DOI: 10.1021/acs.biochem.6b00649  0.96
2016 Gomes MD, Dao P, Jeong K, Slack CC, Vassiliou CC, Finbloom JA, Francis MB, Wemmer DE, Pines A. (129)Xe NMR Relaxation-Based Macromolecular Sensing. Journal of the American Chemical Society. PMID 27472048 DOI: 10.1021/jacs.6b02758  0.96
2016 Jeong K, Netirojjanakul C, Munch HK, Sun J, Finbloom JA, Wemmer DE, Pines A, Francis MB. Targeted Molecular Imaging of Cancer Cells using MS2-Based 129Xe NMR. Bioconjugate Chemistry. PMID 27454679 DOI: 10.1021/acs.bioconjchem.6b00275  0.92
2016 Bhowmick A, Brookes DH, Yost S, Dyson HJ, Forman-Kay JD, Gunter D, Head-Gordon M, Hura GL, Pande VS, Wemmer DE, Wright PE, Head-Gordon T. Finding Our Way in the Dark Proteome. Journal of the American Chemical Society. PMID 27387657 DOI: 10.1021/jacs.6b06543  0.96
2016 Lim KH, Dasari AK, Hung I, Gan Z, Kelly JW, Wemmer DE. Structural Changes Associated with Transthyretin Misfolding and Amyloid Formation Revealed by Solution and Solid-State NMR. Biochemistry. PMID 26998642 DOI: 10.1021/acs.biochem.6b00164  0.48
2016 Truxal AE, Slack CC, Gomes MD, Vassiliou CC, Wemmer DE, Pines A. Nondisruptive Dissolution of Hyperpolarized (129) Xe into Viscous Aqueous and Organic Liquid Crystalline Environments. Angewandte Chemie (International Ed. in English). PMID 26954536 DOI: 10.1002/anie.201511539  0.96
2016 Finbloom JA, Slack CC, Bruns CJ, Jeong K, Wemmer DE, Pines A, Francis MB. Rotaxane-mediated suppression and activation of cucurbit[6]uril for molecular detection by (129)Xe hyperCEST NMR. Chemical Communications (Cambridge, England). PMID 26795714 DOI: 10.1039/c5cc10410f  0.96
2015 Xu H, Kim S, Sorek H, Lee Y, Jeong D, Kim JY, Oh EJ, Yun EJ, Wemmer DE, Kim KH, Kim SR, Jin YS. PHO13 Deletion-Induced Transcriptional Activation Prevents Sedoheptulose Accumulation during Xylose Metabolism in Engineered Saccharomyces cerevisiae. Metabolic Engineering. PMID 26724864 DOI: 10.1016/j.ymben.2015.12.007  0.96
2015 Sorek N, Szemenyei H, Sorek H, Landers A, Knight H, Bauer S, Wemmer DE, Somerville CR. Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor MONGOOSE1. Proceedings of the National Academy of Sciences of the United States of America. PMID 26655738 DOI: 10.1073/pnas.1521675112  0.96
2015 Jeong K, Slack CC, Vassiliou CC, Dao P, Gomes MD, Kennedy DJ, Truxal AE, Sperling LJ, Francis MB, Wemmer DE, Pines A. Investigation of DOTA-Metal Chelation Effects on the Chemical Shift of (129) Xe. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26376768 DOI: 10.1002/cphc.201500806  0.96
2015 Sharma SC, Armand T, Aurelia Ball K, Chen A, Pelton JG, Wemmer DE, Head-Gordon T. A Facile method for expression and purification of (15)N isotope-labeled human Alzheimer's β-amyloid peptides from E. coli for NMR-based structural analysis. Protein Expression and Purification. PMID 26231074 DOI: 10.1016/j.pep.2015.07.012  0.96
2015 Hwang HJ, Min HJ, Yun H, Pelton JG, Wemmer DE, Cho KO, Kim JS, Lee CW. Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch. Biochemical and Biophysical Research Communications. 459: 610-6. PMID 25753201 DOI: 10.1016/j.bbrc.2015.02.156  0.96
2015 Wemmer DE. Hyperpolarized xenon biosensors and HyperCEST New Developments in Nmr. 2015: 249-260.  0.96
2014 Sorek N, Sorek H, Kijac A, Szemenyei HJ, Bauer S, Hématy K, Wemmer DE, Somerville CR. The Arabidopsis COBRA protein facilitates cellulose crystallization at the plasma membrane. The Journal of Biological Chemistry. 289: 34911-20. PMID 25331944 DOI: 10.1074/jbc.M114.607192  0.96
2014 Vidangos NK, Heideker J, Lyubimov A, Lamers M, Huo Y, Pelton JG, Ton J, Gralla J, Berger J, Wemmer DE. DNA recognition by a σ(54) transcriptional activator from Aquifex aeolicus. Journal of Molecular Biology. 426: 3553-68. PMID 25158097 DOI: 10.1016/j.jmb.2014.08.009  0.96
2014 De D, Jeong MH, Leem YE, Svergun DI, Wemmer DE, Kang JS, Kim KK, Kim SH. Inhibition of master transcription factors in pluripotent cells induces early stage differentiation. Proceedings of the National Academy of Sciences of the United States of America. 111: 1778-83. PMID 24434556 DOI: 10.1073/pnas.1323386111  0.96
2014 Ball KA, Wemmer DE, Head-Gordon T. Comparison of structure determination methods for intrinsically disordered amyloid-β peptides. The Journal of Physical Chemistry. B. 118: 6405-16. PMID 24410358 DOI: 10.1021/jp410275y  0.96
2014 Garimella PD, Meldrum T, Witus LS, Smith M, Bajaj VS, Wemmer DE, Francis MB, Pines A. Hyperpolarized xenon-based molecular sensors for label-free detection of analytes. Journal of the American Chemical Society. 136: 164-8. PMID 24313335 DOI: 10.1021/ja406760r  0.96
2014 Palaniappan KK, Francis MB, Pines A, Wemmer DE. Molecular sensing using hyperpolarized xenon NMR spectroscopy Israel Journal of Chemistry. 54: 104-112. DOI: 10.1002/ijch.201300128  0.96
2013 Wan W, Bian W, McDonald M, Kijac A, Wemmer DE, Stubbs G. Heterogeneous seeding of a prion structure by a generic amyloid form of the fungal prion-forming domain HET-s(218-289). The Journal of Biological Chemistry. 288: 29604-12. PMID 23986444 DOI: 10.1074/jbc.M113.505511  0.96
2013 Iwig JS, Vercoulen Y, Das R, Barros T, Limnander A, Che Y, Pelton JG, Wemmer DE, Roose JP, Kuriyan J. Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1. Elife. 2: e00813. PMID 23908768 DOI: 10.7554/eLife.00813  0.96
2013 Vidangos N, Maris AE, Young A, Hong E, Pelton JG, Batchelor JD, Wemmer DE. Structure, function, and tethering of DNA-binding domains in σ(54) transcriptional activators. Biopolymers. 99: 1082-96. PMID 23818155 DOI: 10.1002/bip.22333  0.96
2013 Ball KA, Phillips AH, Wemmer DE, Head-Gordon T. Differences in β-strand populations of monomeric Aβ40 and Aβ42. Biophysical Journal. 104: 2714-24. PMID 23790380 DOI: 10.1016/j.bpj.2013.04.056  0.96
2013 Palaniappan KK, Ramirez RM, Bajaj VS, Wemmer DE, Pines A, Francis MB. Molecular imaging of cancer cells using a bacteriophage-based 129Xe NMR biosensor. Angewandte Chemie (International Ed. in English). 52: 4849-53. PMID 23554263 DOI: 10.1002/anie.201300170  0.96
2013 Cheng K, Sorek H, Zimmermann H, Wemmer DE, Pauly M. Solution-state 2D NMR spectroscopy of plant cell walls enabled by a dimethylsulfoxide-d6/1-ethyl-3-methylimidazolium acetate solvent. Analytical Chemistry. 85: 3213-21. PMID 23413964 DOI: 10.1021/ac303529v  0.96
2013 Arkhipov A, Shan Y, Das R, Endres NF, Eastwood MP, Wemmer DE, Kuriyan J, Shaw DE. Architecture and membrane interactions of the EGF receptor. Cell. 152: 557-69. PMID 23374350 DOI: 10.1016/j.cell.2012.12.030  0.96
2013 Endres NF, Das R, Smith AW, Arkhipov A, Kovacs E, Huang Y, Pelton JG, Shan Y, Shaw DE, Wemmer DE, Groves JT, Kuriyan J. Conformational coupling across the plasma membrane in activation of the EGF receptor. Cell. 152: 543-56. PMID 23374349 DOI: 10.1016/j.cell.2012.12.032  0.96
2013 Batchelor JD, Lee PS, Wang AC, Doucleff M, Wemmer DE. Structural mechanism of GAF-regulated σ(54) activators from Aquifex aeolicus. Journal of Molecular Biology. 425: 156-70. PMID 23123379 DOI: 10.1016/j.jmb.2012.10.017  0.96
2013 Stevens TK, Palaniappan KK, Ramirez RM, Francis MB, Wemmer DE, Pines A. HyperCEST detection of a 129Xe-based contrast agent composed of cryptophane-A molecular cages on a bacteriophage scaffold. Magnetic Resonance in Medicine. 69: 1245-52. PMID 22791581 DOI: 10.1002/mrm.24371  0.96
2013 Hu P, Borglin S, Kamennaya NA, Chen L, Park H, Mahoney L, Kijac A, Shan G, Chavarría KL, Zhang C, Quinn NWT, Wemmer D, Holman HY, Jansson C. Metabolic phenotyping of the cyanobacterium Synechocystis 6803 engineered for production of alkanes and free fatty acids Applied Energy. 102: 850-859. DOI: 10.1016/j.apenergy.2012.08.047  0.96
2012 Bauer S, Sorek H, Mitchell VD, Ibáñez AB, Wemmer DE. Characterization of Miscanthus giganteus lignin isolated by ethanol organosolv process under reflux condition. Journal of Agricultural and Food Chemistry. 60: 8203-12. PMID 22823333 DOI: 10.1021/jf302409d  0.96
2011 Leonelli L, Pelton J, Schoeffler A, Dahlbeck D, Berger J, Wemmer DE, Staskawicz B. Structural elucidation and functional characterization of the Hyaloperonospora arabidopsidis effector protein ATR13. Plos Pathogens. 7: e1002428. PMID 22194684 DOI: 10.1371/journal.ppat.1002428  0.96
2011 Meldrum T, Bajaj VS, Wemmer DE, Pines A. Band-selective chemical exchange saturation transfer imaging with hyperpolarized xenon-based molecular sensors. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 213: 14-21. PMID 21974996 DOI: 10.1016/j.jmr.2011.06.027  0.96
2011 Ball KA, Phillips AH, Nerenberg PS, Fawzi NL, Wemmer DE, Head-Gordon T. Homogeneous and heterogeneous tertiary structure ensembles of amyloid-β peptides. Biochemistry. 50: 7612-28. PMID 21797254 DOI: 10.1021/bi200732x  0.96
2011 Michalak DJ, Xu S, Lowery TJ, Crawford CW, Ledbetter M, Bouchard LS, Wemmer DE, Budker D, Pines A. Relaxivity of gadolinium complexes detected by atomic magnetometry. Magnetic Resonance in Medicine. 66: 605-8. PMID 21433067 DOI: 10.1002/mrm.22811  0.96
2011 Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M. The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2. Cell. 144: 769-81. PMID 21376237 DOI: 10.1016/j.cell.2011.01.035  0.96
2011 Hernandez JA, Phillips AH, Erbil WK, Zhao D, Demuez M, Zeymer C, Pelton JG, Wemmer DE, Rubio LM. A sterile alpha-motif domain in NafY targets apo-NifDK for iron-molybdenum cofactor delivery via a tethered domain. The Journal of Biological Chemistry. 286: 6321-8. PMID 21156797 DOI: 10.1074/jbc.M110.168732  0.96
2011 Kim KS, Pelton JG, Inwood WB, Andersen U, Kustu S, Wemmer DE. The rut pathway for pyrimidine degradation: Novel chemistry and toxicity problems (Journal of Bacteriology (2010) 192, 16 (4089-4102)) Journal of Bacteriology. 193: 326. DOI: 10.1128/JB.01302-10  0.96
2011 Fawzi NL, Phillips AH, Ruscio JZ, Doucleff M, Wemmer DE, Head-Gordon T. Structure and dynamics of the Aβ 21-30 peptide from the interplay of NMR experiments and molecular simulations (Journal of the American Chemical Society (2008) 130 (6145-6158) DOI: 10.1021/ja710366c) Journal of the American Chemical Society. 133: 11816. DOI: 10.1021/ja204315n  0.96
2010 Schilling F, Schröder L, Palaniappan KK, Zapf S, Wemmer DE, Pines A. MRI thermometry based on encapsulated hyperpolarized xenon. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 11: 3529-33. PMID 20821795 DOI: 10.1002/cphc.201000507  0.96
2010 Damo SM, Phillips AH, Young AL, Li S, Woods VL, Wemmer DE. Probing the conformation of a prion protein fibril with hydrogen exchange. The Journal of Biological Chemistry. 285: 32303-11. PMID 20679344 DOI: 10.1074/jbc.M110.114504  0.96
2010 Wetzler M, Wemmer DE. Facile dimer synthesis for DNA-binding polyamide ligands. Organic Letters. 12: 3488-90. PMID 20670013 DOI: 10.1021/ol1013262  0.96
2010 Meldrum T, Schröder L, Denger P, Wemmer DE, Pines A. Xenon-based molecular sensors in lipid suspensions. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 205: 242-6. PMID 20542715 DOI: 10.1016/j.jmr.2010.05.005  0.96
2010 Kim KS, Pelton JG, Inwood WB, Andersen U, Kustu S, Wemmer DE. The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. Journal of Bacteriology. 192: 4089-102. PMID 20400551 DOI: 10.1128/JB.00201-10  0.96
2010 Meldrum T, Seim KL, Bajaj VS, Palaniappan KK, Wu W, Francis MB, Wemmer DE, Pines A. A xenon-based molecular sensor assembled on an MS2 viral capsid scaffold. Journal of the American Chemical Society. 132: 5936-7. PMID 20392049 DOI: 10.1021/ja100319f  0.96
2010 Sterling HJ, Batchelor JD, Wemmer DE, Williams ER. Effects of buffer loading for electrospray ionization mass spectrometry of a noncovalent protein complex that requires high concentrations of essential salts. Journal of the American Society For Mass Spectrometry. 21: 1045-9. PMID 20226685 DOI: 10.1016/j.jasms.2010.02.003  0.96
2010 Çetinkol OP, Dibble DC, Cheng G, Kent MS, Knierim B, Auer M, Wemmer DE, Pelton JG, Melnichenko YB, Ralph J, Simmons BA, Holmes BM. Understanding the impact of ionic liquid pretreatment on eucalyptus Biofuels. 1: 33-46. DOI: 10.4155/bfs.09.5  0.96
2010 Wemmer DE. Feeling the Pull Biopolymers. 93: iv. DOI: 10.1002/bip.21349  0.96
2009 Erbil WK, Price MS, Wemmer DE, Marletta MA. A structural basis for H-NOX signaling in Shewanella oneidensis by trapping a histidine kinase inhibitory conformation. Proceedings of the National Academy of Sciences of the United States of America. 106: 19753-60. PMID 19918063 DOI: 10.1073/pnas.0911645106  0.96
2009 Batchelor JD, Sterling HJ, Hong E, Williams ER, Wemmer DE. Receiver domains control the active-state stoichiometry of Aquifex aeolicus sigma54 activator NtrC4, as revealed by electrospray ionization mass spectrometry. Journal of Molecular Biology. 393: 634-43. PMID 19699748 DOI: 10.1016/j.jmb.2009.08.033  0.96
2009 Inwood WB, Hall JA, Kim KS, Demirkhanyan L, Wemmer D, Zgurskaya H, Kustu S. Epistatic effects of the protease/chaperone HflB on some damaged forms of the Escherichia coli ammonium channel AmtB. Genetics. 183: 1327-40. PMID 19596908 DOI: 10.1534/genetics.109.103747  0.96
2009 Jura N, Endres NF, Engel K, Deindl S, Das R, Lamers MH, Wemmer DE, Zhang X, Kuriyan J. Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment. Cell. 137: 1293-307. PMID 19563760 DOI: 10.1016/j.cell.2009.04.025  0.96
2009 Hong E, Doucleff M, Wemmer DE. Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point. Journal of Molecular Biology. 390: 70-82. PMID 19426742 DOI: 10.1016/j.jmb.2009.04.070  0.96
2009 Ledbetter MP, Crawford CW, Pines A, Wemmer DE, Knappe S, Kitching J, Budker D. Optical detection of NMR J-spectra at zero magnetic field. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 199: 25-9. PMID 19406678 DOI: 10.1016/j.jmr.2009.03.008  0.96
2009 Buhrlage SJ, Bates CA, Rowe SP, Minter AR, Brennan BB, Majmudar CY, Wemmer DE, Al-Hashimi H, Mapp AK. Amphipathic small molecules mimic the binding mode and function of endogenous transcription factors. Acs Chemical Biology. 4: 335-44. PMID 19348463 DOI: 10.1021/cb900028j  0.96
2009 Jura N, Endres NF, Engel K, Deindl S, Das R, Lamers MH, Wemmer DE, Zhang X, Kuriyan J. Mechanism for Activation of the EGF Receptor Catalytic Domain by the Juxtamembrane Segment (DOI:10.1016/j.cell.2009.04.025) Cell. 138: 604. DOI: 10.1016/j.cell.2009.07.028  0.96
2009 Schröder L, Meldrum T, Smith M, Schilling F, Denger P, Zapf S, Wemmer D, Pines A. Xenon biosensors for multi-purpose molecular imaging Ifmbe Proceedings. 25: 176-179. DOI: 10.1007/978-3-642-03895-2-51  0.96
2008 Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE. Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation. Journal of Molecular Biology. 384: 1058-75. PMID 18955063 DOI: 10.1016/j.jmb.2008.10.024  0.96
2008 Schröder L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, Pines A. Temperature response of 129Xe depolarization transfer and its application for ultrasensitive NMR detection. Physical Review Letters. 100: 257603. PMID 18643704  0.92
2008 Schröder L, Chavez L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, Pines A. Temperature-controlled molecular depolarization gates in nuclear magnetic resonance. Angewandte Chemie (International Ed. in English). 47: 4316-20. PMID 18461575 DOI: 10.1002/anie.200800382  0.96
2008 Fawzi NL, Phillips AH, Ruscio JZ, Doucleff M, Wemmer DE, Head-Gordon T. Structure and dynamics of the Abeta(21-30) peptide from the interplay of NMR experiments and molecular simulations. Journal of the American Chemical Society. 130: 6145-58. PMID 18412346 DOI: 10.1021/ja710366c  0.96
2008 Baxter NJ, Blackburn GM, Marston JP, Hounslow AM, Cliff MJ, Bermel W, Williams NH, Hollfelder F, Wemmer DE, Waltho JP. Anionic charge is prioritized over geometry in aluminum and magnesium fluoride transition state analogs of phosphoryl transfer enzymes. Journal of the American Chemical Society. 130: 3952-8. PMID 18318536 DOI: 10.1021/ja078000n  0.96
2008 Schröder L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, Pines A. Temperature response of Xe129 depolarization transfer and its application for ultrasensitive NMR detection Physical Review Letters. 100. DOI: 10.1103/PhysRevLett.100.257603  0.96
2007 Matsuda S, Fillo JD, Henry AA, Rai P, Wilkens SJ, Dwyer TJ, Geierstanger BH, Wemmer DE, Schultz PG, Spraggon G, Romesberg FE. Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs. Journal of the American Chemical Society. 129: 10466-73. PMID 17685517 DOI: 10.1021/ja072276d  0.96
2007 Lowery TJ, Pelton JG, Chandonia JM, Kim R, Yokota H, Wemmer DE. NMR structure of the N-terminal domain of the replication initiator protein DnaA. Journal of Structural and Functional Genomics. 8: 11-7. PMID 17680349 DOI: 10.1007/s10969-007-9022-7  0.96
2007 Fraser JS, Merlie JP, Echols N, Weisfield SR, Mignot T, Wemmer DE, Zusman DR, Alber T. An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS. Molecular Microbiology. 65: 319-32. PMID 17573816 DOI: 10.1111/j.1365-2958.2007.05785.x  0.96
2007 Doucleff M, Pelton JG, Lee PS, Nixon BT, Wemmer DE. Structural basis of DNA recognition by the alternative sigma-factor, sigma54. Journal of Molecular Biology. 369: 1070-8. PMID 17481658 DOI: 10.1016/j.jmb.2007.04.019  0.96
2007 Chen B, Doucleff M, Wemmer DE, De Carlo S, Huang HH, Nogales E, Hoover TR, Kondrashkina E, Guo L, Nixon BT. ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54. Structure (London, England : 1993). 15: 429-40. PMID 17437715 DOI: 10.1016/j.str.2007.02.007  0.96
2007 Tang YJ, Hwang JS, Wemmer DE, Keasling JD. Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Applied and Environmental Microbiology. 73: 718-29. PMID 17098921 DOI: 10.1128/AEM.01532-06  0.96
2007 Garcia S, Chavez L, Lowery TJ, Han SI, Wemmer DE, Pines A. Sensitivity enhancement by exchange mediated magnetization transfer of the xenon biosensor signal. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 184: 72-7. PMID 17046295 DOI: 10.1016/j.jmr.2006.09.010  0.96
2006 Simon MD, Feldman ME, Rauh D, Maris AE, Wemmer DE, Shokat KM. Structure and properties of a re-engineered homeodomain protein-DNA interface. Acs Chemical Biology. 1: 755-60. PMID 17240973 DOI: 10.1021/cb6003756  0.56
2006 Schröder L, Lowery TJ, Hilty C, Wemmer DE, Pines A. Molecular imaging using a targeted magnetic resonance hyperpolarized biosensor. Science (New York, N.Y.). 314: 446-9. PMID 17053143 DOI: 10.1126/science.1131847  0.96
2006 Pirruccello M, Sondermann H, Pelton JG, Pellicena P, Hoelz A, Chernoff J, Wemmer DE, Kuriyan J. A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases. Journal of Molecular Biology. 361: 312-26. PMID 16837009 DOI: 10.1016/j.jmb.2006.06.017  0.96
2006 Roberts A, Pelton JG, Wemmer DE. Structural studies of MJ1529, an O6-methylguanine-DNA methyltransferase. Magnetic Resonance in Chemistry : Mrc. 44: S71-82. PMID 16826543 DOI: 10.1002/mrc.1823  0.96
2006 Mynar JL, Lowery TJ, Wemmer DE, Pines A, Fréchet JM. Xenon biosensor amplification via dendrimer-cage supramolecular constructs. Journal of the American Chemical Society. 128: 6334-5. PMID 16683795 DOI: 10.1021/ja061735s  0.96
2006 Lowery TJ, Garcia S, Chavez L, Ruiz EJ, Wu T, Brotin T, Dutasta JP, King DS, Schultz PG, Pines A, Wemmer DE. Optimization of xenon biosensors for detection of protein interactions. Chembiochem : a European Journal of Chemical Biology. 7: 65-73. PMID 16342304 DOI: 10.1002/cbic.200500327  0.96
2006 Lim KH, Nguyen TN, Damo SM, Mazur T, Ball HL, Prusiner SB, Pines A, Wemmer DE. Solid-state NMR structural studies of the fibril form of a mutant mouse prion peptide PrP89-143(P101L). Solid State Nuclear Magnetic Resonance. 29: 183-90. PMID 16256316 DOI: 10.1016/j.ssnmr.2005.09.017  0.96
2005 Wemmer DE, Kern D. Beryllofluoride binding mimics phosphorylation of aspartate in response regulators. Journal of Bacteriology. 187: 8229-30. PMID 16321925 DOI: 10.1128/JB.187.24.8229-8230.2005  0.96
2005 Wemmer DE, Kern D. Rebuttal: conformational changes of Spo0F along the phosphotransfer pathway. Journal of Bacteriology. 187: 8228. PMID 16321924 DOI: 10.1128/JB.187.24.8228.2005  0.96
2005 Hilty C, Lowery TJ, Wemmer DE, Pines A. Spectrally resolved magnetic resonance imaging of a xenon biosensor. Angewandte Chemie (International Ed. in English). 45: 70-3. PMID 16311999 DOI: 10.1002/anie.200502693  0.96
2005 Nixon BT, Yennawar HP, Doucleff M, Pelton JG, Wemmer DE, Krueger S, Kondrashkina E. SAS solution structures of the apo and Mg2+/BeF3(-)-bound receiver domain of DctD from Sinorhizobium meliloti. Biochemistry. 44: 13962-9. PMID 16229485 DOI: 10.1021/bi051129u  0.96
2005 Doucleff M, Malak LT, Pelton JG, Wemmer DE. The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70. The Journal of Biological Chemistry. 280: 41530-6. PMID 16210314 DOI: 10.1074/jbc.M509010200  0.96
2005 Pelton JG, Shi J, Yokota H, Kim R, Wemmer DE. NMR structure of hypothetical protein MG354 from Mycoplasma genitalium. Proteins. 61: 666-8. PMID 16184596 DOI: 10.1002/prot.20495  0.96
2005 Doucleff M, Chen B, Maris AE, Wemmer DE, Kondrashkina E, Nixon BT. Negative regulation of AAA + ATPase assembly by two component receiver domains: a transcription activation mechanism that is conserved in mesophilic and extremely hyperthermophilic bacteria. Journal of Molecular Biology. 353: 242-55. PMID 16169010 DOI: 10.1016/j.jmb.2005.08.003  0.96
2005 Kim HS, Damo SM, Lee SY, Wemmer D, Klinman JP. Structure and hydride transfer mechanism of a moderate thermophilic dihydrofolate reductase from Bacillus stearothermophilus and comparison to its mesophilic and hyperthermophilic homologues. Biochemistry. 44: 11428-39. PMID 16114879 DOI: 10.1021/bi050630j  0.96
2005 Han SI, Garcia S, Lowery TJ, Ruiz EJ, Seeley JA, Chavez L, King DS, Wemmer DE, Pines A. NMR-based biosensing with optimized delivery of polarized 129Xe to solutions. Analytical Chemistry. 77: 4008-12. PMID 15987104 DOI: 10.1021/ac0500479  0.96
2005 Choi YJ, Ryu KS, Ko YM, Chae YK, Pelton JG, Wemmer DE, Choi BS. Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF-ERCC1 complex. The Journal of Biological Chemistry. 280: 28644-52. PMID 15932882 DOI: 10.1074/jbc.M501083200  0.96
2005 Lowery TJ, Doucleff M, Ruiz EJ, Rubin SM, Pines A, Wemmer DE. Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR. Protein Science : a Publication of the Protein Society. 14: 848-55. PMID 15741343 DOI: 10.1110/ps.041231005  0.96
2005 Rai P, Wemmer DE, Linn S. Preferential binding and structural distortion by Fe2+ at RGGG-containing DNA sequences correlates with enhanced oxidative cleavage at such sequences. Nucleic Acids Research. 33: 497-510. PMID 15659581 DOI: 10.1093/nar/gki192  0.96
2005 Roberts A, Lee SY, McCullagh E, Silversmith RE, Wemmer DE. YbiV from Escherichia coli K12 is a HAD phosphatase. Proteins. 58: 790-801. PMID 15657928 DOI: 10.1002/prot.20267  0.96
2004 Spence MM, Ruiz EJ, Rubin SM, Lowery TJ, Winssinger N, Schultz PG, Wemmer DE, Pines A. Development of a functionalized xenon biosensor. Journal of the American Chemical Society. 126: 15287-94. PMID 15548026 DOI: 10.1021/ja0483037  0.96
2004 Lowery TJ, Rubin SM, Ruiz EJ, Pines A, Wemmer DE. Design of a conformation-sensitive xenon-binding cavity in the ribose-binding protein. Angewandte Chemie (International Ed. in English). 43: 6320-2. PMID 15476190 DOI: 10.1002/anie.200460629  0.96
2004 Zhang Q, Dwyer TJ, Tsui V, Case DA, Cho J, Dervan PB, Wemmer DE. NMR structure of a cyclic polyamide-DNA complex. Journal of the American Chemical Society. 126: 7958-66. PMID 15212545 DOI: 10.1021/ja0373622  0.96
2004 Shi J, Pelton JG, Cho HS, Wemmer DE. Protein signal assignments using specific labeling and cell-free synthesis. Journal of Biomolecular Nmr. 28: 235-47. PMID 14752257 DOI: 10.1023/B:JNMR.0000013697.10256.74  0.96
2003 Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE. Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog. Journal of Structural and Functional Genomics. 4: 235-43. PMID 15185964 DOI: 10.1023/B:JSFG.0000016127.57320.82  0.96
2003 Lowery TJ, Rubin SM, Ruiz EJ, Spence MM, Winssinger N, Schultz PG, Pines A, Wemmer DE. Applications of laser-polarized 129Xe to biomolecular assays. Magnetic Resonance Imaging. 21: 1235-9. PMID 14725931 DOI: 10.1016/j.mri.2003.08.025  0.96
2003 Wemmer DE. The energetics of structural change in maltose-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 100: 12529-30. PMID 14569013 DOI: 10.1073/pnas.2335923100  0.96
2003 Lee SY, De La Torre A, Yan D, Kustu S, Nixon BT, Wemmer DE. Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains. Genes & Development. 17: 2552-63. PMID 14561776 DOI: 10.1101/gad.1125603  0.96
2003 Nguyen TN, Wemmer DE. Complete resonance assignments for the nudix hydrolase DR2356 of Deinococcus radiodurans. Journal of Biomolecular Nmr. 27: 181-2. PMID 12913415 DOI: 10.1023/A:1024934325331  0.96
2003 Hastings CA, Lee SY, Cho HS, Yan D, Kustu S, Wemmer DE. High-resolution solution structure of the beryllofluoride-activated NtrC receiver domain. Biochemistry. 42: 9081-90. PMID 12885241 DOI: 10.1021/bi0273866  0.96
2003 Gardino AK, Volkman BF, Cho HS, Lee SY, Wemmer DE, Kern D. The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system. Journal of Molecular Biology. 331: 245-54. PMID 12875849 DOI: 10.1016/S0022-2836(03)00733-2  0.96
2003 Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE, Kim SH. Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima. Protein Science : a Publication of the Protein Society. 12: 1464-72. PMID 12824492 DOI: 10.1110/ps.0302703  0.96
2002 Hawkins CA, Baird EE, Dervan PB, Wemmer DE. Analysis of hairpin polyamide complexes having DNA binding sites in close proximity. Journal of the American Chemical Society. 124: 12689-96. PMID 12392416 DOI: 10.1021/ja020335b  0.96
2002 Rubin SM, Lee SY, Ruiz EJ, Pines A, Wemmer DE. Detection and characterization of xenon-binding sites in proteins by 129Xe NMR spectroscopy. Journal of Molecular Biology. 322: 425-40. PMID 12217701 DOI: 10.1016/S0022-2836(02)00739-8  0.96
2002 Lim KH, Nguyen T, Mazur T, Wemmer DE, Pines A. Sensitivity enhancement in multiple-quantum NMR experiments with CPMG detection. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 157: 160-2. PMID 12202146 DOI: 10.1006/jmre.2002.2578  0.96
2002 Supekova L, Pezacki JP, Su AI, Loweth CJ, Riedl R, Geierstanger B, Schultz PG, Wemmer DE. Genomic effects of polyamide/DNA interactions on mRNA expression. Chemistry & Biology. 9: 821-7. PMID 12144926 DOI: 10.1016/S1074-5521(02)00174-6  0.96
2002 Liu K, Kelly JW, Wemmer DE. Native state hydrogen exchange study of suppressor and pathogenic variants of transthyretin. Journal of Molecular Biology. 320: 821-32. PMID 12095258 DOI: 10.1016/S0022-2836(02)00471-0  0.96
2002 Wang W, Cho HS, Kim R, Jancarik J, Yokota H, Nguyen HH, Grigoriev IV, Wemmer DE, Kim SH. Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. Journal of Molecular Biology. 319: 421-31. PMID 12051918 DOI: 10.1016/S0022-2836(02)00324-8  0.96
2002 Westler WM, Frey PA, Lin J, Wemmer DE, Morimoto H, Williams PG, Markley JL. Evidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts. Journal of the American Chemical Society. 124: 4196-7. PMID 11960433 DOI: 10.1021/ja017860f  0.96
2001 Cho HS, Pelton JG, Yan D, Kustu S, Wemmer DE. Phosphoaspartates in bacterial signal transduction. Current Opinion in Structural Biology. 11: 679-84. PMID 11751048 DOI: 10.1016/S0959-440X(01)00271-8  0.96
2001 Havlin RH, Laws DD, Bitter HM, Sanders LK, Sun H, Grimley JS, Wemmer DE, Pines A, Oldfield E. An experimental and theoretical investigation of the chemical shielding tensors of (13)C(alpha) of alanine, valine, and leucine residues in solid peptides and in proteins in solution. Journal of the American Chemical Society. 123: 10362-9. PMID 11603987 DOI: 10.1021/ja0115060  0.96
2001 Rai P, Cole TD, Wemmer DE, Linn S. Localization of Fe(2+) at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe(2+) and H2O2. Journal of Molecular Biology. 312: 1089-101. PMID 11580252 DOI: 10.1006/jmbi.2001.5010  0.96
2001 Laws DD, Bitter HM, Liu K, Ball HL, Kaneko K, Wille H, Cohen FE, Prusiner SB, Pines A, Wemmer DE. Solid-state NMR studies of the secondary structure of a mutant prion protein fragment of 55 residues that induces neurodegeneration. Proceedings of the National Academy of Sciences of the United States of America. 98: 11686-90. PMID 11562491 DOI: 10.1073/pnas.201404298  0.96
2001 Spence MM, Rubin SM, Dimitrov IE, Ruiz EJ, Wemmer DE, Pines A, Yao SQ, Tian F, Schultz PG. Functionalized xenon as a biosensor. Proceedings of the National Academy of Sciences of the United States of America. 98: 10654-7. PMID 11535830 DOI: 10.1073/pnas.191368398  0.96
2001 Rubin SM, Spence MM, Pines A, Wemmer DE. Characterization of the effects of nonspecific xenon-protein interactions on (129)Xe chemical shifts in aqueous solution: further development of xenon as a biomolecular probe. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 152: 79-86. PMID 11531366 DOI: 10.1006/jmre.2001.2389  0.96
2001 Rubin SM, Spence MM, Dimitrov IE, Ruiz EJ, Pines A, Wemmer DE. Detection of a conformational change in maltose binding protein by (129)Xe NMR spectroscopy. Journal of the American Chemical Society. 123: 8616-7. PMID 11525678 DOI: 10.1021/ja0110325  0.96
2001 Zhang Q, Harada K, Cho HS, Frankel AD, Wemmer DE. Structural characterization of the complex of the Rev response element RNA with a selected peptide. Chemistry & Biology. 8: 511-20. PMID 11358697 DOI: 10.1016/S1074-5521(01)00027-8  0.96
2001 Lee SY, Cho HS, Pelton JG, Yan D, Berry EA, Wemmer DE. Crystal structure of activated CheY. Comparison with other activated receiver domains. The Journal of Biological Chemistry. 276: 16425-31. PMID 11279165 DOI: 10.1074/jbc.M101002200  0.96
2001 Cave JW, Cho HS, Batchelder AM, Yokota H, Kim R, Wemmer DE. Solution nuclear magnetic resonance structure of a protein disulfide oxidoreductase from Methanococcus jannaschii. Protein Science : a Publication of the Protein Society. 10: 384-96. PMID 11266624 DOI: 10.1110/ps.35101  0.96
2001 Volkman BF, Lipson D, Wemmer DE, Kern D. Two-state allosteric behavior in a single-domain signaling protein. Science (New York, N.Y.). 291: 2429-33. PMID 11264542 DOI: 10.1126/science.291.5512.2429  0.96
2001 Bastos M, Pease JH, Wemmer DE, Murphy KP, Connelly PR. Thermodynamics of the helix-coil transition: Binding of S15 and a hybrid sequence, disulfide stabilized peptide to the S-protein. Proteins. 42: 523-30. PMID 11170206 DOI: 10.1002/1097-0134(20010301)42:4<523::AID-PROT100>3.0.CO;2-B  0.96
2001 Hawkins CA, Watson C, Yan Y, Gong B, Wemmer DE. Structural analysis of the binding modes of minor groove ligands comprised of disubstituted benzenes. Nucleic Acids Research. 29: 936-42. PMID 11160926  0.96
2001 Lee SY, Cho HS, Pelton JG, Yan D, Henderson RK, King DS, Huang L, Kustu S, Berry EA, Wemmer DE. Crystal structure of an activated response regulator bound to its target. Nature Structural Biology. 8: 52-6. PMID 11135671 DOI: 10.1038/83053  0.96
2000 Cave JW, Kremer W, Wemmer DE. Backbone dynamics of sequence specific recognition and binding by the yeast Pho4 bHLH domain probed by NMR. Protein Science : a Publication of the Protein Society. 9: 2354-65. PMID 11206057 DOI: 10.1110/ps.9.12.2354  0.96
2000 Rogers JP, Luginbühl P, Pemberton K, Harty P, Wemmer DE, Stevens RC. Structure-activity relationships in a peptidic alpha7 nicotinic acetylcholine receptor antagonist. Journal of Molecular Biology. 304: 911-26. PMID 11124036 DOI: 10.1006/jmbi.2000.4247  0.96
2000 Liu K, Cho HS, Hoyt DW, Nguyen TN, Olds P, Kelly JW, Wemmer DE. Deuterium-proton exchange on the native wild-type transthyretin tetramer identifies the stable core of the individual subunits and indicates mobility at the subunit interface. Journal of Molecular Biology. 303: 555-65. PMID 11054291 DOI: 10.1006/jmbi.2000.4164  0.96
2000 Liu K, Cho HS, Lashuel HA, Kelly JW, Wemmer DE. A glimpse of a possible amyloidogenic intermediate of transthyretin. Nature Structural Biology. 7: 754-7. PMID 10966644 DOI: 10.1038/78980  0.96
2000 Wemmer DE. Designed sequence-specific minor groove ligands. Annual Review of Biophysics and Biomolecular Structure. 29: 439-61. PMID 10940255 DOI: 10.1146/annurev.biophys.29.1.439  0.96
2000 Rubin SM, Spence MM, Goodson BM, Wemmer DE, Pines A. Evidence of nonspecific surface interactions between laser-polarized xenon and myoglobin in solution. Proceedings of the National Academy of Sciences of the United States of America. 97: 9472-5. PMID 10931956 DOI: 10.1073/pnas.170278897  0.96
2000 Cho HS, Lee SY, Yan D, Pan X, Parkinson JS, Kustu S, Wemmer DE, Pelton JG. NMR structure of activated CheY. Journal of Molecular Biology. 297: 543-51. PMID 10731410 DOI: 10.1006/jmbi.2000.3595  0.96
2000 Keating KA, Myers JD, Pelton JG, Bair RA, Wemmer DE, Ellis PD. Development and use of a virtual NMR facility. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 143: 172-83. PMID 10698658 DOI: 10.1006/jmre.1999.1974  0.96
2000 Robertson SA, Harada K, Frankel AD, Wemmer DE. Structure determination and binding kinetics of a DNA aptamer-argininamide complex. Biochemistry. 39: 946-54. PMID 10653638 DOI: 10.1021/bi9915061  0.96
2000 Hawkins CA, Peláez De Clairac R, Dominey RN, Baird EE, White S, Dervan PB, Wemmer DE. Controlling binding orientation in hairpin polyamide DNA complexes Journal of the American Chemical Society. 122: X. DOI: 10.1021/ja0001198  0.96
2000 Hawkins CA, Peláez De Clairac R, Dominey RN, Baird EE, White S, Dervan PB, Wemmer DE. Controlling binding orientation in hairpin polyamide DNA complexes Journal of the American Chemical Society. 122: X.  0.96
1999 Wemmer DE. Ligands recognizing the minor groove of DNA: development and applications. Biopolymers. 52: 197-211. PMID 11295751 DOI: 10.1002/1097-0282(1999)52:4<197::AID-BIP1004>3.0.CO;2-U  0.96
1999 Kern D, Volkman BF, Luginbühl P, Nohaile MJ, Kustu S, Wemmer DE. Structure of a transiently phosphorylated switch in bacterial signal transduction. Nature. 402: 894-8. PMID 10622255 DOI: 10.1038/47273  0.96
1999 Yan D, Cho HS, Hastings CA, Igo MM, Lee SY, Pelton JG, Stewart V, Wemmer DE, Kustu S. Beryllofluoride mimics phosphorylation of NtrC and other bacterial response regulators. Proceedings of the National Academy of Sciences of the United States of America. 96: 14789-94. PMID 10611291 DOI: 10.1073/pnas.96.26.14789  0.96
1999 Pelton JG, Kustu S, Wemmer DE. Solution structure of the DNA-binding domain of NtrC with three alanine substitutions. Journal of Molecular Biology. 292: 1095-110. PMID 10512705 DOI: 10.1006/jmbi.1999.3140  0.96
1999 Cho CY, Liu CW, Wemmer DE, Schultz PG. Cyclic and linear oligocarbamate ligands for human thrombin. Bioorganic & Medicinal Chemistry. 7: 1171-9. PMID 10428389 DOI: 10.1016/S0968-0896(99)00028-0  0.96
1999 Rogers JP, Luginbühl P, Shen GS, McCabe RT, Stevens RC, Wemmer DE. NMR solution structure of alpha-conotoxin ImI and comparison to other conotoxins specific for neuronal nicotinic acetylcholine receptors. Biochemistry. 38: 3874-82. PMID 10194298 DOI: 10.1021/bi9826254  0.96
1999 Peteranderl R, Rabenstein M, Shin YK, Liu CW, Wemmer DE, King DS, Nelson HC. Biochemical and biophysical characterization of the trimerization domain from the heat shock transcription factor. Biochemistry. 38: 3559-69. PMID 10090742 DOI: 10.1021/bi981774j  0.96
1999 De Clairac RPL, Seel CJ, Geierstanger BH, Mrksich M, Baird EE, Dervan PB, Wemmer DE. NMR characterization of the aliphatic β/β pairing for recognition of A·T/T·A base pairs in the minor groove of DNA Journal of the American Chemical Society. 121: 2956-2964. DOI: 10.1021/ja983671u  0.96
1999 Read RJ, Wemmer DE. Biophysical methods. Bigger, better, faster and automatically too? Current Opinion in Structural Biology. 9: 591-593. DOI: 10.1016/S0959-440X(99)00010-X  0.96
1998 Gehring K, Zhang X, Hall J, Nikaido H, Wemmer DE. An NMR study of ligand binding by maltodextrin binding protein. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 76: 189-97. PMID 9923688  0.96
1998 Driggers EM, Liu CW, Wemmer DE, Schultz PG. Structure of the Michaelis complex of an efficient antibody acyl transferase determined by transferred nuclear overhauser enhancement spectroscopy [25] Journal of the American Chemical Society. 120: 7395-7396. DOI: 10.1021/ja9813313  0.96
1998 Cho CY, Youngquist RS, Paikoff SJ, Beresini MH, Hebert AR, Berleau LT, Liu CW, Wemmer DE, Keough T, Schultz PG. Synthesis and screening of linear and cyclic oligocarbamate libraries. Discovery of high affinity ligands for GPIIb/IIIa Journal of the American Chemical Society. 120: 7706-7718. DOI: 10.1021/ja9734399  0.96
1998 Driggers EM, Cho HS, Liu CW, Katzka CP, Braisted AC, Ulrich HD, Wemmer DE, Schultz PG. Mechanistic studies of an antibody-catalyzed pericyclic rearrangement Journal of the American Chemical Society. 120: 1945-1958. DOI: 10.1021/ja962933u  0.96
1997 Lee AL, Volkman BF, Robertson SA, Rudner DZ, Barbash DA, Cline TW, Kanaar R, Rio DC, Wemmer DE. Chemical shift mapping of the RNA-binding interface of the multiple-RBD protein sex-lethal. Biochemistry. 36: 14306-17. PMID 9398148 DOI: 10.1021/bi970830y  0.96
1997 Wemmer DE, Dervan PB. Targeting the minor groove of DNA. Current Opinion in Structural Biology. 7: 355-61. PMID 9204277 DOI: 10.1016/S0959-440X(97)80051-6  0.96
1997 Volkman BF, Wemmer DE. Deletion of a single amino acid changes the folding of an apamin hybrid sequence peptide to that of endothelin. Biopolymers. 41: 451-60. PMID 9080780 DOI: 10.1002/(SICI)1097-0282(19970405)41:4<451::AID-BIP9>3.0.CO;2-L  0.96
1997 Heller J, Laws DD, Tomaselli M, King DS, Wemmer DE, Pines A, Havlin RH, Oldfield E. Determination of dihedral angles in peptides through experimental and theoretical studies of α-carbon chemical shielding tensors Journal of the American Chemical Society. 119: 7827-7831. DOI: 10.1021/ja970124k  0.96
1997 Lamamie De Clairac RP, Geierstanger BH, Mrksich M, Dervan PB, Wemmer DE. NMR characterization of hairpin polyamide complexes with the minor groove of DNA Journal of the American Chemical Society. 119: 7909-7916. DOI: 10.1021/ja964314r  0.96
1997 Austin RE, Maplestone RA, Sefler AM, Liu K, Hruzewicz WN, Liu CW, Cho HS, Wemmer DE, Bartlett PA. A template for stabilizatgion of a peptide α-helix: Synthesis and evaluation of conformational effects by circular dichroism and NMR Journal of the American Chemical Society. 119: 6461-6472. DOI: 10.1021/ja964231a  0.96
1996 Heller J, Kolbert AC, Larsen R, Ernst M, Bekker T, Baldwin M, Prusiner SB, Pines A, Wemmer DE. Solid-state NMR studies of the prion protein H1 fragment. Protein Science : a Publication of the Protein Society. 5: 1655-61. PMID 8844854 DOI: 10.1002/pro.5560050819  0.96
1996 Wemmer DE. New features in RNA recognition: a Tat-TAR complex. Chemistry & Biology. 3: 17-9. PMID 8807823 DOI: 10.1016/S1074-5521(96)90078-2  0.96
1996 Kubinec MG, Culf AS, Cho H, Lee DC, Burkham J, Morimoto H, Williams PG, Wemmer DE. Applications of tritium NMR to macromolecules: a study of two nucleic acid molecules. Journal of Biomolecular Nmr. 7: 236-46. PMID 8785499  0.96
1996 Cho HS, Liu CW, Damberger FF, Pelton JG, Nelson HC, Wemmer DE. Yeast heat shock transcription factor N-terminal activation domains are unstructured as probed by heteronuclear NMR spectroscopy. Protein Science : a Publication of the Protein Society. 5: 262-9. PMID 8745404 DOI: 10.1002/pro.5560050210  0.96
1996 Fagan PA, Fàbrega C, Eritja R, Goodman MF, Wemmer DE. NMR study of the conformation of the 2-aminopurine:cytosine mismatch in DNA. Biochemistry. 35: 4026-33. PMID 8672436 DOI: 10.1021/bi952657g  0.96
1996 Fagan PA, Spielmann HP, Sigurdsson S, Rink SM, Hopkins PB, Wemmer DE. An NMR study of [d(CGCGAATTCGCG)]2 containing an interstrand cross-link derived from a distamycin-pyrrole conjugate. Nucleic Acids Research. 24: 1566-73. PMID 8628693 DOI: 10.1093/nar/24.8.1566  0.96
1996 Geierstanger BH, Mrksich M, Dervan PB, Wemmer DE. Extending the recognition site of designed minor groove binding molecules. Nature Structural Biology. 3: 321-4. PMID 8599756 DOI: 10.1038/nsb0496-321  0.96
1996 Braun J, Schwesinger R, Williams PG, Morimoto H, Wemmer DE, Limbach HH. Kinetic H/D/T isotope and solid state effects on the tautomerism of the conjugate porphyrin monoanion Journal of the American Chemical Society. 118: 11101-11110. DOI: 10.1021/ja961313q  0.96
1996 Braun J, Limbach HH, Williams PG, Morimoto H, Wemmer DE. Observation of kinetic tritium isotope effects by dynamic NMR. The tautomerism of porphyrin Journal of the American Chemical Society. 118: 7231-7232. DOI: 10.1021/ja954146n  0.96
1996 De Jaiswal VK, Morimoto H, Trump EL, Williams PG, Wemmer DE. Synthesis of high specific activity tritium labelled [2-3H]-adenosine-5'-triphosphates Journal of Labelled Compounds and Radiopharmaceuticals. 38: 743-752. DOI: 10.1002/(SICI)1099-1344(199608)38:8<743::AID-JLCR884>3.0.CO;2-F  0.96
1996 Heller J, Larsen R, Ernst M, Kolbert AC, Baldwin M, Prusiner SB, Wemmer DE, Pines A. Application of rotational resonance to inhomogeneously broadened systems Chemical Physics Letters. 251: 223-229.  0.96
1995 Liu H, Spielmann HP, Ulyanov NB, Wemmer DE, James TL. Interproton distance bounds from 2D NOE intensities: effect of experimental noise and peak integration errors. Journal of Biomolecular Nmr. 6: 390-402. PMID 8563467 DOI: 10.1007/BF00197638  0.96
1995 Rentzeperis D, Marky LA, Dwyer TJ, Geierstanger BH, Pelton JG, Wemmer DE. Interaction of minor groove ligands to an AAATT/AATTT site: correlation of thermodynamic characterization and solution structure. Biochemistry. 34: 2937-45. PMID 7893707  0.96
1995 Spielmann HP, Dwyer TJ, Sastry SS, Hearst JE, Wemmer DE. DNA structural reorganization upon conversion of a psoralen furan-side monoadduct to an interstrand cross-link: implications for DNA repair. Proceedings of the National Academy of Sciences of the United States of America. 92: 2345-9. PMID 7892269 DOI: 10.1073/pnas.92.6.2345  0.96
1995 Volkman BF, Nohaile MJ, Amy NK, Kustu S, Wemmer DE. Three-dimensional solution structure of the N-terminal receiver domain of NTRC. Biochemistry. 34: 1413-24. PMID 7827089  1
1995 Spielmann HP, Fagan PA, Bregant TM, Little RD, Wemmer DE. The binding modes of a rationally designed photoactivated DNA nuclease determined by NMR. Nucleic Acids Research. 23: 1576-83. PMID 7784213  0.76
1995 Jacobsen JP, Pedersen JB, Hansen LF, Wemmer DE. Site selective bis-intercalation of a homodimeric thiazole orange dye in DNA oligonucleotides. Nucleic Acids Research. 23: 753-60. PMID 7708489  0.96
1995 Geierstanger BH, Wemmer DE. Complexes of the minor groove of DNA. Annual Review of Biophysics and Biomolecular Structure. 24: 463-93. PMID 7663124 DOI: 10.1146/annurev.bb.24.060195.002335  0.96
1995 Spielmann HP, Wemmer DE, Jacobsen JP. Solution structure of a DNA complex with the fluorescent bis-intercalator TOTO determined by NMR spectroscopy. Biochemistry. 34: 8542-53. PMID 7612596 DOI: 10.1021/bi00027a004  0.96
1995 Kanaar R, Lee AL, Rudner DZ, Wemmer DE, Rio DC. Interaction of the sex-lethal RNA binding domains with RNA. The Embo Journal. 14: 4530-9. PMID 7556096  0.96
1995 Spielmann HP, Dwyer TJ, Hearst JE, Wemmer DE. Solution structures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics. Biochemistry. 34: 12937-53. PMID 7548052  0.96
1995 Damberger FF, Pelton JG, Liu C, Cho H, Harrison CJ, Nelson HC, Wemmer DE. Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis. Journal of Molecular Biology. 254: 704-19. PMID 7500344 DOI: 10.1006/jmbi.1995.0649  0.96
1995 Pelton JG, Wemmer DE. Heteronuclear NMR pulse sequences applied to biomolecules. Annual Review of Physical Chemistry. 46: 139-67. PMID 7495481 DOI: 10.1146/annurev.pc.46.100195.001035  0.96
1994 Geierstanger BH, Volkman BF, Kremer W, Wemmer DE. Short peptide fragments derived from HMG-I/Y proteins bind specifically to the minor groove of DNA. Biochemistry. 33: 5347-55. PMID 8172908 DOI: 10.1021/bi00183a043  0.96
1994 Zhou HX, Lyu P, Wemmer DE, Kallenbach NR. Alpha helix capping in synthetic model peptides by reciprocal side chain-main chain interactions: evidence for an N terminal "capping box". Proteins. 18: 1-7. PMID 8146119 DOI: 10.1002/prot.340180103  0.96
1994 Geierstanger BH, Jacobsen JP, Mrksich M, Dervan PB, Wemmer DE. Structural and dynamic characterization of the heterodimeric and homodimeric complexes of distamycin and 1-methylimidazole-2-carboxamide-netropsin bound to the minor groove of DNA. Biochemistry. 33: 3055-62. PMID 8130219  0.96
1994 Singh SB, Wemmer DE, Kollman PA. Relative binding affinities of distamycin and its analog to d(CGCAAGTTGGC).d(GCCAACTTGCG): comparison of simulation results with experiment. Proceedings of the National Academy of Sciences of the United States of America. 91: 7673-7. PMID 8052641 DOI: 10.1073/pnas.91.16.7673  0.96
1994 Geierstanger BH, Mrksich M, Dervan PB, Wemmer DE. Design of a G.C-specific DNA minor groove-binding peptide. Science (New York, N.Y.). 266: 646-50. PMID 7939719  0.96
1994 Damberger FF, Pelton JG, Harrison CJ, Nelson HC, Wemmer DE. Solution structure of the DNA-binding domain of the heat shock transcription factor determined by multidimensional heteronuclear magnetic resonance spectroscopy. Protein Science : a Publication of the Protein Society. 3: 1806-21. PMID 7849597 DOI: 10.1002/pro.5560031020  0.96
1994 Wemmer DE, Williams PG. Use of nuclear magnetic resonance in probing ligand-macromolecule interactions. Methods in Enzymology. 239: 739-67. PMID 7830603 DOI: 10.1016/S0076-6879(94)39028-2  0.96
1994 Pagel MD, Wemmer DE. Solution structure of a core peptide derived from scyllatoxin. Proteins. 18: 205-15. PMID 7515492 DOI: 10.1002/prot.340180302  0.96
1994 Zhou HX, Lyu PC, Wemmer DE, Kallenbach NR. Structure of a C-terminal α-helix cap in a synthetic peptide Journal of the American Chemical Society. 116: 1139-1140.  0.96
1993 Lyu PC, Wemmer DE, Zhou HX, Pinker RJ, Kallenbach NR. Capping interactions in isolated alpha helices: position-dependent substitution effects and structure of a serine-capped peptide helix. Biochemistry. 32: 421-5. PMID 8422351  0.96
1993 Wemmer DE, Wedemayer GJ, Glazer AN. Phycobilins of cryptophycean algae. Novel linkage of dihydrobiliverdin in a phycoerythrin 555 and a phycocyanin 645. The Journal of Biological Chemistry. 268: 1658-69. PMID 8420941  0.96
1993 Highsmith S, Kubinec M, Jaiswal DK, Morimoto H, Williams PG, Wemmer DE. [2-3H]ATP synthesis and 3H NMR spectroscopy of enzyme-nucleotide complexes: ADP and ADP.Vi bound to myosin subfragment 1. Journal of Biomolecular Nmr. 3: 325-34. PMID 8358234 DOI: 10.1007/BF00212518  0.96
1993 Dwyer TJ, Geierstanger BH, Mrksich M, Dervan PB, Wemmer DE. Structural analysis of covalent peptide dimers, Bis(pyridine-2-carboxamidonetropsin)(CH2)3-6, in complex with 5′-TGACT-3′ sites by two-dimensional NMR Journal of the American Chemical Society. 115: 9900-9906.  0.96
1993 Emsley L, Dwyer TJ, Spielmann HP, Wemmer DE. Determination of DNA conformational features from selective two-dimensional NMR experiments Journal of the American Chemical Society. 115: 7765-7771.  0.96
1993 Geierstanger BH, Dwyer TJ, Bathini Y, Lown JW, Wemmer DE. NMR characterization of a heterocomplex formed by distamycin and its analog 2-ImD with d(GGCAAGTTGGC):d(GCCAACTTIGCG): Preference for the 1:1:1 2-ImD:Dst:DNA complex over the 2:1 2-ImD:DNA and the 2:1 Dst:DNA complexes Journal of the American Chemical Society. 115: 4474-4482.  0.96
1992 Werner MH, Wemmer DE. Three-dimensional structure of soybean trypsin/chymotrypsin Bowman-Birk inhibitor in solution. Biochemistry. 31: 999-1010. PMID 1734975  0.96
1992 Rye HS, Yue S, Wemmer DE, Quesada MA, Haugland RP, Mathies RA, Glazer AN. Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications. Nucleic Acids Research. 20: 2803-12. PMID 1614866  0.96
1992 Gaillard J, Albrand JP, Moulis JM, Wemmer DE. Sequence-specific assignments of the 1H nuclear magnetic resonance spectra of reduced high-potential ferredoxin (HiPIP) from Chromatium vinosum. Biochemistry. 31: 5632-9. PMID 1610810 DOI: 10.1021/bi00139a029  0.96
1992 Werner MH, Wemmer DE. Identification of a protein-binding surface by differential amide hydrogen-exchange measurements. Application to Bowman-Birk serine-protease inhibitor. Journal of Molecular Biology. 225: 873-89. PMID 1602487 DOI: 10.1016/0022-2836(92)90407-B  0.96
1992 Wedemayer GJ, Kidd DG, Wemmer DE, Glazer AN. Phycobilins of cryptophycean algae. Occurrence of dihydrobiliverdin and mesobiliverdin in cryptomonad biliproteins. The Journal of Biological Chemistry. 267: 7315-31. PMID 1559975  0.96
1992 Tomic MT, Somoza JR, Wemmer DE, Park YW, Cho JM, Kim SH. 1H resonance assignments, secondary structure and general topology of single-chain monellin in solution as determined by 1H 2D-NMR. Journal of Biomolecular Nmr. 2: 557-72. PMID 1490107 DOI: 10.1007/BF02192845  0.96
1992 Storrs RW, Truckses D, Wemmer DE. Helix propagation in trifluoroethanol solutions. Biopolymers. 32: 1695-702. PMID 1472652 DOI: 10.1002/bip.360321211  0.96
1992 Sastry SS, Spielmann HP, Dwyer TJ, Wemmer DE, Hearst JE. Recent advances in the synthesis and structure determination of site specifically psoralen-modified DNA oligonucleotides. Journal of Photochemistry and Photobiology. B, Biology. 14: 65-79. PMID 1432385 DOI: 10.1016/1011-1344(92)85083-7  0.96
1992 Amaratunga M, Snowden-Ifft E, Wemmer DE, Benight AS. Studies of DNA dumbbells. II. Construction and characterization of DNA dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14). Biopolymers. 32: 865-79. PMID 1391635 DOI: 10.1002/bip.360320713  0.96
1992 Mrksich M, Wade WS, Dwyer TJ, Geierstanger BH, Wemmer DE, Dervan PB. Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin. Proceedings of the National Academy of Sciences of the United States of America. 89: 7586-90. PMID 1323845  0.96
1992 Kubinec MG, Wemmer DE. Solution NMR of water on protein surfaces Current Opinion in Structural Biology. 2: 828-831. DOI: 10.1016/0959-440X(92)90106-H  0.96
1992 Kubinec MG, Wemmer DE. NMR evidence for DNA bound water in solution Journal of the American Chemical Society. 114: 8739-8740.  0.96
1992 Dwyer TJ, Geierstanger BH, Bathini Y, Lown JW, Wemmer DE. Design and binding of a distamycin A analog to d(CGCAAGTTGGC)·d)GCCAACTTGCG): Synthesis, NMR studies, and implications for the design of sequence-specific minor groove binding oligopeptides Journal of the American Chemical Society. 114: 5911-5919.  0.96
1992 Fagan P, Wemmer DE. Cooperative binding of distamycin-A to DNA in the 2:1 mode Journal of the American Chemical Society. 114: 1080-1081.  0.96
1991 Gehring K, Williams PG, Pelton JG, Morimoto H, Wemmer DE. Tritium NMR spectroscopy of ligand binding to maltose-binding protein. Biochemistry. 30: 5524-31. PMID 2036421  0.68
1991 McIntire WS, Wemmer DE, Chistoserdov A, Lidstrom ME. A new cofactor in a prokaryotic enzyme: tryptophan tryptophylquinone as the redox prosthetic group in methylamine dehydrogenase. Science (New York, N.Y.). 252: 817-24. PMID 2028257  0.96
1991 Werner MH, Wemmer DE. 1H assignments and secondary structure determination of the soybean trypsin/chymotrypsin Bowman-Birk inhibitor. Biochemistry. 30: 3356-64. PMID 2012801  0.96
1991 Wedemayer GJ, Wemmer DE, Glazer AN. Phycobilins of cryptophycean algae. Structures of novel bilins with acryloyl substituents from phycoerythrin 566. The Journal of Biological Chemistry. 266: 4731-41. PMID 2002022  0.96
1991 Kallick DA, Wemmer DE. 1H NMR of 5'CGCGTATATACGCG3', a duplex and a four-membered loop. Nucleic Acids Research. 19: 6041-6. PMID 1945888  0.96
1991 Wemmer DE. The applicability of NMR methods to solution structure of nucleic acids Current Opinion in Structural Biology. 1: 452-458. DOI: 10.1016/0959-440X(91)90047-W  0.96
1990 Pease JH, Storrs RW, Wemmer DE. Folding and activity of hybrid sequence, disulfide-stabilized peptides. Proceedings of the National Academy of Sciences of the United States of America. 87: 5643-7. PMID 2377603  0.68
1990 Pelton JG, Wemmer DE. Structure and dynamics of distamycin A with d(CGCAAATTGGC):d(GCCAATTTGCG) at low drug:DNA ratios. Journal of Biomolecular Structure & Dynamics. 8: 81-97. PMID 2275799 DOI: 10.1080/07391102.1990.10507791  0.96
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