Richard Alfred Mathies - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
biophysical chemistry
Website:
http://chemistry.berkeley.edu/faculty/chem/mathies

273 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rothbauer M, Charwat V, Bachmann B, Sticker D, Novak R, Wanzenböck H, Mathies RA, Ertl P. Monitoring transient cell-to-cell interactions in a multi-layered and multi-functional allergy-on-a-chip system. Lab On a Chip. PMID 31070645 DOI: 10.1039/c9lc00108e  0.76
2019 Ellis SR, Dietze DR, Rangel T, Brown-Altvater F, Neaton JB, Mathies RA. Resonance Raman Characterization of Tetracene Monomer and Nanocrystals: Excited State Lattice Distortions with Implications for Efficient Singlet Fission. The Journal of Physical Chemistry. A. PMID 30952191 DOI: 10.1021/acs.jpca.9b02986  0.64
2018 Park M, Neukirch AJ, Reyes-Lillo SE, Lai M, Ellis SR, Dietze D, Neaton JB, Yang P, Tretiak S, Mathies RA. Excited-state vibrational dynamics toward the polaron in methylammonium lead iodide perovskite. Nature Communications. 9: 2525. PMID 29955070 DOI: 10.1038/s41467-018-04946-7  0.64
2018 Ellis SR, Hoffman DP, Park M, Mathies RA. Difference Bands in Time Resolved Femtosecond Stimulated Raman Spectra of Photoexcited Intermolecular Electron Transfer from Chloronapthalene to Tetracyanoetheylene. The Journal of Physical Chemistry. A. PMID 29558802 DOI: 10.1021/acs.jpca.8b00318  1
2017 Du K, Park M, Griffiths A, Carrion R, Patterson J, Schmidt H, Mathies RA. Microfluidic System for Detection of Viral RNA in Blood using a Barcode Fluorescence Reporter and a Photo-Cleavable Capture Probe. Analytical Chemistry. PMID 29073356 DOI: 10.1021/acs.analchem.7b03527  0.32
2017 Mathies RA, Razu ME, Kim J, Stockton AM, Turin P, Butterworth A. Feasibility of Detecting Bioorganic Compounds in Enceladus Plumes with the Enceladus Organic Analyzer. Astrobiology. 17: 902-912. PMID 28915087 DOI: 10.1089/ast.2017.1660  0.72
2017 Park M, Kornienko N, Reyes-Lillo SE, Lai M, Neaton JB, Yang P, Mathies RA. Critical Role of Methylammonium Librational Motion in Methylammonium Lead Iodide (CH3NH3PbI3) Perovskite Photochemistry. Nano Letters. PMID 28562052 DOI: 10.1021/acs.nanolett.7b00919  0.32
2016 Duberow DP, Brait M, Hoque MO, Theodorescu D, Sidransky D, Dasgupta S, Mathies RA. High-performance detection of somatic D-loop mutation in urothelial cell carcinoma patients by polymorphism ratio sequencing. Journal of Molecular Medicine (Berlin, Germany). PMID 27030170 DOI: 10.1007/s00109-016-1407-2  1
2016 Hoffman DP, Mathies RA. Femtosecond Stimulated Raman Exposes the Role of Vibrational Coherence in Condensed-Phase Photoreactivity. Accounts of Chemical Research. PMID 27003235 DOI: 10.1021/acs.accounts.5b00508  1
2016 Kim J, Stockton AM, Jensen EC, Mathies RA. Pneumatically actuated microvalve circuits for programmable automation of chemical and biochemical analysis. Lab On a Chip. PMID 26864083 DOI: 10.1039/c5lc01397f  0.92
2015 Jung YK, Kim J, Mathies RA. Microfluidic hydrogel arrays for direct genotyping of clinical samples. Biosensors & Bioelectronics. 79: 371-378. PMID 26735871 DOI: 10.1016/j.bios.2015.12.068  1
2015 Dasgupta J, Heyne K, Yang Y, Mathies R. Non-bonded interactions drive the sub-picosecond bilin photoisomerization in the Pfr state of phytochrome Cph1. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26630441 DOI: 10.1002/cphc.201501073  1
2015 Mathies RA. Photochemistry: A coherent picture of vision. Nature Chemistry. 7: 945-7. PMID 26587705 DOI: 10.1038/nchem.2406  1
2015 Hoffman DP, Leblebici SY, Schwartzberg AM, Mathies RA. Exciton Mobility in Organic Photovoltaic Heterojunctions from Femtosecond Stimulated Raman. The Journal of Physical Chemistry Letters. 6: 2919-23. PMID 26267181 DOI: 10.1021/acs.jpclett.5b01436  1
2015 Dalton DM, Ellis SR, Nichols EM, Mathies RA, Toste FD, Bergman RG, Raymond KN. Supramolecular Ga4L6(12-) Cage Photosensitizes 1,3-Rearrangement of Encapsulated Guest via Photoinduced Electron Transfer. Journal of the American Chemical Society. 137: 10128-31. PMID 26256754 DOI: 10.1021/jacs.5b06317  0.64
2015 Novak R, Hart K, Mathies RA. Single cell measurement of telomerase expression and splicing using microfluidic emulsion cultures. Nucleic Acids Research. 43: e104. PMID 26202962 DOI: 10.1093/nar/gkv477  1
2015 Valley DT, Hoffman DP, Mathies RA. Reactive and unreactive pathways in a photochemical ring opening reaction from 2D femtosecond stimulated Raman. Physical Chemistry Chemical Physics : Pccp. 17: 9231-40. PMID 25761064 DOI: 10.1039/c4cp05323k  1
2015 Jung YK, Kim J, Mathies RA. Microfluidic linear hydrogel array for multiplexed single nucleotide polymorphism (SNP) detection. Analytical Chemistry. 87: 3165-70. PMID 25673175 DOI: 10.1021/ac5048696  1
2015 Geng T, Mathies RA. Minimizing inhibition of PCR-STR typing using digital agarose droplet microfluidics. Forensic Science International. Genetics. 14: 203-9. PMID 25450795 DOI: 10.1016/j.fsigen.2014.10.007  1
2015 Dietze DR, Mathies RA. Molecular orientation and optical properties of 3,3′-diethylthiatricarbocyanine iodide adsorbed to gold surfaces: Consequences for surface-enhanced resonance Raman spectroscopy Journal of Physical Chemistry C. 119: 9980-9987. DOI: 10.1021/acs.jpcc.5b02686  1
2014 Parks JW, Olson MA, Kim J, Ozcelik D, Cai H, Carrion R, Patterson JL, Mathies RA, Hawkins AR, Schmidt H. Integration of programmable microfluidics and on-chip fluorescence detection for biosensing applications. Biomicrofluidics. 8: 054111. PMID 25584111 DOI: 10.1063/1.4897226  1
2014 Summons RE, Sessions AL, Allwood AC, Barton HA, Beaty DW, Blakkolb B, Canham J, Clark BC, Dworkin JP, Lin Y, Mathies R, Milkovich SM, Steele A. Planning considerations related to the organic contamination of Martian samples and implications for the Mars 2020 Rover. Astrobiology. 14: 969-1027. PMID 25495496 DOI: 10.1089/ast.2014.1244  1
2014 El Muslemany KM, Twite AA, ElSohly AM, Obermeyer AC, Mathies RA, Francis MB. Photoactivated bioconjugation between ortho-azidophenols and anilines: a facile approach to biomolecular photopatterning. Journal of the American Chemical Society. 136: 12600-6. PMID 25171554 DOI: 10.1021/ja503056x  1
2014 Hoffman DP, Ellis SR, Mathies RA. Characterization of a conical intersection in a charge-transfer dimer with two-dimensional time-resolved stimulated Raman spectroscopy. The Journal of Physical Chemistry. A. 118: 4955-65. PMID 24932925 DOI: 10.1021/jp5041986  1
2014 De Re E, Schlau-Cohen GS, Leverenz RL, Huxter VM, Oliver TA, Mathies RA, Fleming GR. Insights into the structural changes occurring upon photoconversion in the orange carotenoid protein from broadband two-dimensional electronic spectroscopy. The Journal of Physical Chemistry. B. 118: 5382-9. PMID 24779893 DOI: 10.1021/jp502120h  1
2014 Polli D, Weingart O, Brida D, Poli E, Maiuri M, Spillane KM, Bottoni A, Kukura P, Mathies RA, Cerullo G, Garavelli M. Wavepacket splitting and two-pathway deactivation in the photoexcited visual pigment isorhodopsin. Angewandte Chemie (International Ed. in English). 53: 2504-7. PMID 24481600 DOI: 10.1002/anie.201309867  1
2014 Creelman M, Kumauchi M, Hoff WD, Mathies RA. Chromophore dynamics in the PYP photocycle from femtosecond stimulated Raman spectroscopy. The Journal of Physical Chemistry. B. 118: 659-67. PMID 24451027 DOI: 10.1021/jp408584v  1
2014 Leverenz RL, Jallet D, Li MD, Mathies RA, Kirilovsky D, Kerfeld CA. Structural and functional modularity of the orange carotenoid protein: distinct roles for the N- and C-terminal domains in cyanobacterial photoprotection. The Plant Cell. 26: 426-37. PMID 24399299 DOI: 10.1105/tpc.113.118588  1
2014 Geng T, Novak R, Mathies RA. Single-cell forensic short tandem repeat typing within microfluidic droplets. Analytical Chemistry. 86: 703-12. PMID 24266330 DOI: 10.1021/ac403137h  1
2014 Parks JW, Zempoaltecatl L, Mathies RA, Hawkins AR, Schmidt H. Automated single molecule nucleic acid detection with a waveguide chip Optics Infobase Conference Papers 1
2014 Kim J, Stockton A, Willis P, Lillis R, Amundson R, Beegle L, Butterworth A, Curtis D, Ehrenfreund P, Grunthaner F, Hazen R, Kaiser R, Ludlam M, Mora M, Scherer J, ... ... Mathies RA, et al. The Mars organic analyzer: Instrumentation and methods for detecting trace organic molecules in our solar system 18th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2014. 33-35.  1
2013 Hoffman DP, Ellis SR, Mathies RA. Low frequency resonant impulsive Raman modes reveal inversion mechanism for azobenzene. The Journal of Physical Chemistry. A. 117: 11472-8. PMID 24138073 DOI: 10.1021/jp408470a  1
2013 Hoffman DP, Valley D, Ellis SR, Creelman M, Mathies RA. Optimally shaped narrowband picosecond pulses for femtosecond stimulated Raman spectroscopy. Optics Express. 21: 21685-92. PMID 24104042 DOI: 10.1364/OE.21.021685  1
2013 Shuga J, Zeng Y, Novak R, Lan Q, Tang X, Rothman N, Vermeulen R, Li L, Hubbard A, Zhang L, Mathies RA, Smith MT. Single molecule quantitation and sequencing of rare translocations using microfluidic nested digital PCR. Nucleic Acids Research. 41: e159. PMID 23873959 DOI: 10.1093/nar/gkt613  1
2013 Kim J, Jensen EC, Stockton AM, Mathies RA. Universal microfluidic automaton for autonomous sample processing: application to the Mars Organic Analyzer. Analytical Chemistry. 85: 7682-8. PMID 23675832 DOI: 10.1021/ac303767m  1
2013 Novak R, Ranu N, Mathies RA. Rapid fabrication of nickel molds for prototyping embossed plastic microfluidic devices. Lab On a Chip. 13: 1468-71. PMID 23450308 DOI: 10.1039/c3lc41362d  1
2013 Jensen EC, Stockton AM, Chiesl TN, Kim J, Bera A, Mathies RA. Digitally programmable microfluidic automaton for multiscale combinatorial mixing and sample processing. Lab On a Chip. 13: 288-96. PMID 23172232 DOI: 10.1039/c2lc40861a  1
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers. DOI: 10.1109/CLEOE-IQEC.2013.6801979  1
2013 Kaiser RI, Stockton AM, Kim YS, Jensen EC, Mathies RA. On the formation of dipeptides in interstellar model ices Astrophysical Journal. 765. DOI: 10.1088/0004-637X/765/2/111  1
2013 De Re E, Schlau-Cohen GS, Huxter VM, Leverenz RL, Mathies RA, Fleming GR. Comparing the photophysics of the two forms of the Orange Carotenoid Protein using 2D electronic spectroscopy Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134108008  1
2013 Hoffman DP, Lee OP, Millstone JE, Chen MS, Su TA, Creelman M, Fréchet JMJ, Mathies RA. Electron transfer dynamics of triphenylamine dyes bound to TiO2 nanoparticles from femtosecond stimulated Raman spectroscopy Journal of Physical Chemistry C. 117: 6990-6997. DOI: 10.1021/jp400369b  1
2013 Parks JW, Kim J, Zempoaltecatl L, Ozcelik D, Cai H, Mathies RA, Hawkins AR, Schmidt H. Hybrid optofluidic device for fluidic particle manipulation and detection Cleo: Applications and Technology, Cleo_at 2013. ATu1N.2.  1
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers 1
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers 1
2013 Parks JW, Kim J, Zempoaltecatl L, Ozcelik D, Cai H, Mathies RA, Hawkins AR, Schmidt H. Hybrid optofluidic device for fluidic particle manipulation and detection Cleo: Applications and Technology, Cleo_at 2013. ATu1N.2.  1
2012 Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis MB, Mathies RA. Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 8120-6. PMID 22512362 DOI: 10.1021/la204863s  1
2012 Fujisawa T, Creelman M, Mathies RA. Structural dynamics of a noncovalent charge transfer complex from femtosecond stimulated Raman spectroscopy. The Journal of Physical Chemistry. B. 116: 10453-60. PMID 22439588 DOI: 10.1021/jp3001306  1
2012 Twite AA, Hsiao SC, Onoe H, Mathies RA, Francis MB. Direct attachment of microbial organisms to material surfaces through sequence-specific DNA hybridization. Advanced Materials (Deerfield Beach, Fla.). 24: 2380-5. PMID 22431245 DOI: 10.1002/adma.201104336  1
2012 Hoffman DP, Mathies RA. Photoexcited structural dynamics of an azobenzene analog 4-nitro-4'-dimethylamino-azobenzene from femtosecond stimulated Raman. Physical Chemistry Chemical Physics : Pccp. 14: 6298-306. PMID 22370582 DOI: 10.1039/c2cp23468h  1
2012 Spillane KM, Dasgupta J, Mathies RA. Conformational homogeneity and excited-state isomerization dynamics of the bilin chromophore in phytochrome Cph1 from resonance Raman intensities. Biophysical Journal. 102: 709-17. PMID 22325295 DOI: 10.1016/j.bpj.2011.11.4019  1
2012 Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD. Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 1702-7. PMID 22307634 DOI: 10.1073/pnas.1112905109  1
2012 Kim J, Kang M, Jensen EC, Mathies RA. Lifting gate polydimethylsiloxane microvalves and pumps for microfluidic control. Analytical Chemistry. 84: 2067-71. PMID 22257104 DOI: 10.1021/ac202934x  1
2012 Bromberg A, Jensen EC, Kim J, Jung YK, Mathies RA. Microfabricated linear hydrogel microarray for single-nucleotide polymorphism detection. Analytical Chemistry. 84: 963-70. PMID 22145681 DOI: 10.1021/ac202303f  1
2012 Liu P, Greenspoon SA, Yeung SH, Scherer JR, Mathies RA. Integrated sample cleanup and microchip capillary array electrophoresis for high-performance forensic STR profiling. Methods in Molecular Biology (Clifton, N.J.). 830: 351-65. PMID 22139672 DOI: 10.1007/978-1-61779-461-2_24  1
2012 Liedert R, Amundsen LK, Hokkanen A, Mäki M, Aittakorpi A, Pakanen M, Scherer JR, Mathies RA, Kurkinen M, Uusitalo S, Hakalahti L, Nevanen TK, Siitari H, Söderlund H. Disposable roll-to-roll hot embossed electrophoresis chip for detection of antibiotic resistance gene mecA in bacteria. Lab On a Chip. 12: 333-9. PMID 22127494 DOI: 10.1039/c1lc20782b  1
2012 Frontiera RR, Fang C, Dasgupta J, Mathies RA. Probing structural evolution along multidimensional reaction coordinates with femtosecond stimulated Raman spectroscopy. Physical Chemistry Chemical Physics : Pccp. 14: 405-14. PMID 22120433 DOI: 10.1039/c1cp22767j  1
2012 Dasgupta S, Shao C, Keane TE, Duberow DP, Mathies RA, Fisher PB, Kiemeney LA, Sidransky D. Detection of mitochondrial deoxyribonucleic acid alterations in urine from urothelial cell carcinoma patients. International Journal of Cancer. Journal International Du Cancer. 131: 158-64. PMID 21826645 DOI: 10.1002/ijc.26357  1
2012 Gambini S, Skucha K, Liu P, Kim J, Krigel R, Mathies R, Boser B. A CMOS 10kpixel baseline-free magnetic bead detector with column-parallel readout for miniaturized immunoassays Digest of Technical Papers - Ieee International Solid-State Circuits Conference. 55: 126-127. DOI: 10.1109/ISSCC.2012.6176948  1
2011 Kim J, Jensen EC, Megens M, Boser B, Mathies RA. Integrated microfluidic bioprocessor for solid phase capture immunoassays. Lab On a Chip. 11: 3106-12. PMID 21804972 DOI: 10.1039/c1lc20407f  1
2011 Stockton AM, Tjin CC, Chiesl TN, Mathies RA. Analysis of carbonaceous biomarkers with the Mars Organic Analyzer microchip capillary electrophoresis system: carboxylic acids. Astrobiology. 11: 519-28. PMID 21790324 DOI: 10.1089/ast.2011.0634  1
2011 Weinert EE, Phillips-Piro CM, Tran R, Mathies RA, Marletta MA. Controlling conformational flexibility of an O₂-binding H-NOX domain. Biochemistry. 50: 6832-40. PMID 21721586 DOI: 10.1021/bi200788x  1
2011 Tran R, Weinert EE, Boon EM, Mathies RA, Marletta MA. Determinants of the heme-CO vibrational modes in the H-NOX family. Biochemistry. 50: 6519-30. PMID 21714509 DOI: 10.1021/bi200551s  1
2011 Liu P, Li X, Greenspoon SA, Scherer JR, Mathies RA. Integrated DNA purification, PCR, sample cleanup, and capillary electrophoresis microchip for forensic human identification. Lab On a Chip. 11: 1041-8. PMID 21293830 DOI: 10.1039/c0lc00533a  1
2011 Novak R, Zeng Y, Shuga J, Venugopalan G, Fletcher DA, Smith MT, Mathies RA. Single-cell multiplex gene detection and sequencing with microfluidically generated agarose emulsions. Angewandte Chemie (International Ed. in English). 50: 390-5. PMID 21132688 DOI: 10.1002/anie.201006089  1
2011 Liu P, Scherer JR, Greenspoon SA, Chiesl TN, Mathies RA. Integrated sample cleanup and capillary array electrophoresis microchip for forensic short tandem repeat analysis. Forensic Science International. Genetics. 5: 484-92. PMID 21071298 DOI: 10.1016/j.fsigen.2010.10.009  1
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers. DOI: 10.1109/CLEOE.2011.5943521  1
2011 Frontiera RR, Mathies RA. Femtosecond stimulated Raman spectroscopy Laser and Photonics Reviews. 5: 102-113. DOI: 10.1002/lpor.200900048  1
2011 Kim J, Jensen EC, Megens M, Boser B, Mathies RA. A microfluidic platform for automated microparticle label immunoassays 15th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2011, Microtas 2011. 2: 1002-1004.  1
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers 1
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers 1
2010 Jensen EC, Zeng Y, Kim J, Mathies RA. Microvalve Enabled Digital Microfluidic Systems for High Performance Biochemical and Genetic Analysis. Jala (Charlottesville, Va.). 15: 455-463. PMID 21218162 DOI: 10.1016/j.jala.2010.08.003  1
2010 Scherer JR, Liu P, Mathies RA. Design and operation of a portable scanner for high performance microchip capillary array electrophoresis. The Review of Scientific Instruments. 81: 113105. PMID 21133459 DOI: 10.1063/1.3502457  1
2010 Thaitrong N, Liu P, Briese T, Lipkin WI, Chiesl TN, Higa Y, Mathies RA. Integrated capillary electrophoresis microsystem for multiplex analysis of human respiratory viruses. Analytical Chemistry. 82: 10102-9. PMID 21114282 DOI: 10.1021/ac1020744  1
2010 Stockton AM, Tjin CC, Huang GL, Benhabib M, Chiesl TN, Mathies RA. Analysis of carbonaceous biomarkers with the Mars Organic Analyzer microchip capillary electrophoresis system: aldehydes and ketones. Electrophoresis. 31: 3642-9. PMID 20967779 DOI: 10.1002/elps.201000424  1
2010 Shuga J, Zeng Y, Novak R, Mathies RA, Hainaut P, Smith MT. Selected technologies for measuring acquired genetic damage in humans. Environmental and Molecular Mutagenesis. 51: 851-70. PMID 20872848 DOI: 10.1002/em.20630  1
2010 Polli D, Altoè P, Weingart O, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Kukura P, Mathies RA, Garavelli M, Cerullo G. Conical intersection dynamics of the primary photoisomerization event in vision. Nature. 467: 440-3. PMID 20864998 DOI: 10.1038/nature09346  1
2010 Yeo BS, Klaus SL, Ross PN, Mathies RA, Bell AT. Identification of hydroperoxy species as reaction intermediates in the electrochemical evolution of oxygen on gold. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 11: 1854-7. PMID 20473978 DOI: 10.1002/cphc.201000294  1
2010 Jensen EC, Bhat BP, Mathies RA. A digital microfluidic platform for the automation of quantitative biomolecular assays. Lab On a Chip. 10: 685-91. PMID 20221555 DOI: 10.1039/b920124f  1
2010 Zeng Y, Novak R, Shuga J, Smith MT, Mathies RA. High-performance single cell genetic analysis using microfluidic emulsion generator arrays. Analytical Chemistry. 82: 3183-90. PMID 20192178 DOI: 10.1021/ac902683t  1
2010 Benhabib M, Chiesl TN, Stockton AM, Scherer JR, Mathies RA. Multichannel capillary electrophoresis microdevice and instrumentation for in situ planetary analysis of organic molecules and biomarkers. Analytical Chemistry. 82: 2372-9. PMID 20151682 DOI: 10.1021/ac9025994  1
2010 Wu A, Wang L, Jensen E, Mathies R, Boser B. Modular integration of electronics and microfluidic systems using flexible printed circuit boards. Lab On a Chip. 10: 519-21. PMID 20126694 DOI: 10.1039/b922830f  1
2010 Novak R, Zeng Y, Shuga J, Venugopalan G, Fletcher D, Zhang L, Smith MT, Mathies RA. Microdroplet emulsion generator arrays for high-throughput single cell genetic variation analysis 14th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2010, Microtas 2010. 3: 1649-1651.  1
2010 Fang C, Frontiera RR, Tran R, Mathies RA. Mapping GFP structural evolution during excited-state proton transfer with femtosecond stimulated Raman Optics Infobase Conference Papers 1
2010 Frontiera RR, Creelman M, Dasgupta J, Smeigh AL, McCusker JK, Mathies RA. Femtosecond Raman structural studies of interfacial electron transfer in Grätzel cell sensitizers Acs National Meeting Book of Abstracts 1
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 1
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 1
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 1
2009 Bovee-Geurts PH, Fernández Fernández I, Liu RS, Mathies RA, Lugtenburg J, Degrip WJ. Fluoro derivatives of retinal illuminate the decisive role of the C(12)-H element in photoisomerization and rhodopsin activation. Journal of the American Chemical Society. 131: 17933-42. PMID 19995077 DOI: 10.1021/ja907577p  1
2009 Stockton AM, Chiesl TN, Lowenstein TK, Amashukeli X, Grunthaner F, Mathies RA. Capillary electrophoresis analysis of organic amines and amino acids in saline and acidic samples using the Mars organic analyzer. Astrobiology. 9: 823-31. PMID 19968460 DOI: 10.1089/ast.2009.0357  1
2009 Fang C, Frontiera RR, Tran R, Mathies RA. Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy. Nature. 462: 200-4. PMID 19907490 DOI: 10.1038/nature08527  1
2009 Frontiera RR, Dasgupta J, Mathies RA. Probing interfacial electron transfer in coumarin 343 sensitized TiO2 nanoparticles with femtosecond stimulated Raman. Journal of the American Chemical Society. 131: 15630-2. PMID 19860478 DOI: 10.1021/ja907188b  1
2009 Zhang W, Lin S, Wang C, Hu J, Li C, Zhuang Z, Zhou Y, Mathies RA, Yang CJ. PMMA/PDMS valves and pumps for disposable microfluidics. Lab On a Chip. 9: 3088-94. PMID 19823724 DOI: 10.1039/b907254c  1
2009 Spillane KM, Dasgupta J, Lagarias JC, Mathies RA. Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis. Journal of the American Chemical Society. 131: 13946-8. PMID 19739629 DOI: 10.1021/ja905822m  1
2009 Liu P, Mathies RA. Integrated microfluidic systems for high-performance genetic analysis. Trends in Biotechnology. 27: 572-81. PMID 19709772 DOI: 10.1016/j.tibtech.2009.07.002  1
2009 Tran R, Boon EM, Marletta MA, Mathies RA. Resonance Raman spectra of an O2-binding H-NOX domain reveal heme relaxation upon mutation. Biochemistry. 48: 8568-77. PMID 19653642 DOI: 10.1021/bi900563g  1
2009 Douglas ES, Hsiao SC, Onoe H, Bertozzi CR, Francis MB, Mathies RA. DNA-barcode directed capture and electrochemical metabolic analysis of single mammalian cells on a microelectrode array. Lab On a Chip. 9: 2010-5. PMID 19568668 DOI: 10.1039/b821690h  1
2009 Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis MB. Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 6985-91. PMID 19505164 DOI: 10.1021/la900150n  1
2009 Shim S, Dasgupta J, Mathies RA. Femtosecond time-resolved stimulated Raman reveals the birth of bacteriorhodopsin's J and K intermediates. Journal of the American Chemical Society. 131: 7592-7. PMID 19441850 DOI: 10.1021/ja809137x  1
2009 Beyor N, Yi L, Seo TS, Mathies RA. Integrated capture, concentration, polymerase chain reaction, and capillary electrophoretic analysis of pathogens on a chip. Analytical Chemistry. 81: 3523-8. PMID 19341275 DOI: 10.1021/ac900060r  1
2009 Chiesl TN, Chu WK, Stockton AM, Amashukeli X, Grunthaner F, Mathies RA. Enhanced amine and amino acid analysis using Pacific Blue and the Mars Organic Analyzer microchip capillary electrophoresis system. Analytical Chemistry. 81: 2537-44. PMID 19245228 DOI: 10.1021/ac8023334  1
2009 Dasgupta J, Frontiera RR, Taylor KC, Lagarias JC, Mathies RA. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 106: 1784-9. PMID 19179399 DOI: 10.1073/pnas.0812056106  1
2009 Thaitrong N, Toriello NM, Del Bueno N, Mathies RA. Polymerase chain reaction-capillary electrophoresis genetic analysis microdevice with in-line affinity capture sample injection. Analytical Chemistry. 81: 1371-7. PMID 19140739 DOI: 10.1021/ac802057f  1
2009 Stockton AM, Chiesl TN, Scherer JR, Mathies RA. Polycyclic aromatic hydrocarbon analysis with the Mars organic analyzer microchip capillary electrophoresis system. Analytical Chemistry. 81: 790-6. PMID 19072718 DOI: 10.1021/ac802033u  1
2009 Yeung SH, Liu P, Del Bueno N, Greenspoon SA, Mathies RA. Integrated sample cleanup-capillary electrophoresis microchip for high-performance short tandem repeat genetic analysis. Analytical Chemistry. 81: 210-7. PMID 19061366 DOI: 10.1021/ac8018685  1
2009 Seo TS, Shin KJ, Choi JY, Mathies RA. Multiplex mini Y short tandem repeat haplotyping using fluorescence energy transfer labeled primers Biochip Journal. 2: 192-199.  1
2009 Seo TS, Beyor N, Yi L, Mathies RA. Integrated capture, concentration, PCR, and capillary electrophoretic analysis for detection of pathogens on a chip Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1049-1051.  1
2008 Liu P, Yeung SH, Crenshaw KA, Crouse CA, Scherer JR, Mathies RA. Real-time forensic DNA analysis at a crime scene using a portable microchip analyzer. Forensic Science International. Genetics. 2: 301-9. PMID 19083840 DOI: 10.1016/j.fsigen.2008.03.009  1
2008 Toriello NM, Douglas ES, Thaitrong N, Hsiao SC, Francis MB, Bertozzi CR, Mathies RA. Integrated microfluidic bioprocessor for single-cell gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America. 105: 20173-8. PMID 19075237 DOI: 10.1073/pnas.0806355106  1
2008 Smeigh AL, Creelman M, Mathies RA, McCusker JK. Femtosecond time-resolved optical and Raman spectroscopy of photoinduced spin crossover: temporal resolution of low-to-high spin optical switching. Journal of the American Chemical Society. 130: 14105-7. PMID 18826307 DOI: 10.1021/ja805949s  1
2008 Frontiera RR, Shim S, Mathies RA. Origin of negative and dispersive features in anti-Stokes and resonance femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 129: 064507. PMID 18715085 DOI: 10.1063/1.2966361  1
2008 Aubrey AD, Chalmers JH, Bada JL, Grunthaner FJ, Amashukeli X, Willis P, Skelley AM, Mathies RA, Quinn RC, Zent AP, Ehrenfreund P, Amundson R, Glavin DP, Botta O, Barron L, et al. The Urey instrument: an advanced in situ organic and oxidant detector for Mars exploration. Astrobiology. 8: 583-95. PMID 18680409 DOI: 10.1089/ast.2007.0169  1
2008 Beyor N, Seo TS, Liu P, Mathies RA. Immunomagnetic bead-based cell concentration microdevice for dilute pathogen detection. Biomedical Microdevices. 10: 909-17. PMID 18677651 DOI: 10.1007/s10544-008-9206-3  1
2008 Greenspoon SA, Yeung SH, Johnson KR, Chu WK, Rhee HN, McGuckian AB, Crouse CA, Chiesl TN, Barron AE, Scherer JR, Ban JD, Mathies RA. A forensic laboratory tests the Berkeley microfabricated capillary array electrophoresis device. Journal of Forensic Sciences. 53: 828-37. PMID 18540973 DOI: 10.1111/j.1556-4029.2008.00750.x  1
2008 Yeung SH, Medintz IL, Greenspoon SA, Mathies RA. Rapid determination of monozygous twinning with a microfabricated capillary array electrophoresis genetic-analysis device. Clinical Chemistry. 54: 1080-4. PMID 18509014 DOI: 10.1373/clinchem.2007.102319  1
2008 Yeung SH, Seo TS, Crouse CA, Greenspoon SA, Chiesl TN, Ban JD, Mathies RA. Fluorescence energy transfer-labeled primers for high-performance forensic DNA profiling. Electrophoresis. 29: 2251-9. PMID 18435498 DOI: 10.1002/elps.200700772  1
2008 Kumaresan P, Yang CJ, Cronier SA, Blazej RG, Mathies RA. High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets. Analytical Chemistry. 80: 3522-9. PMID 18410131 DOI: 10.1021/ac800327d  1
2008 Shim S, Mathies RA. Development of a tunable femtosecond stimulated raman apparatus and its application to beta-carotene. The Journal of Physical Chemistry. B. 112: 4826-32. PMID 18363396 DOI: 10.1021/jp710518y  1
2008 Shim S, Stuart CM, Mathies RA. Resonance Raman cross-sections and vibronic analysis of rhodamine 6G from broadband stimulated Raman spectroscopy. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 9: 697-9. PMID 18330856 DOI: 10.1002/cphc.200700856  1
2008 Seo TS, Yeung SHI, Crouse CA, Greenspoon SA, Chiesl TN, Ban JD, Mathies RA. High-performance forensic DNA profiling using fluorescence energy transfer primers and a 96-lane microfabricated capillary array electrophoresis device 3rd Ieee International Conference On Nano/Micro Engineered and Molecular Systems, Nems. 1193-1198. DOI: 10.1109/NEMS.2008.4484531  1
2008 Shim S, Mathies RA. Femtosecond Raman-induced Kerr effect spectroscopy Journal of Raman Spectroscopy. 39: 1526-1530. DOI: 10.1002/jrs.2109  1
2008 Willis PA, Smith JA, Greer F, Grunthaner FJ, Epp L, Hoppe D, Chiesl TN, Mathies RA, Sprague JJ, Rolland JP. Integrated microfluidic capillary electrophoresis system for biochemical analysis on mars as part of the urey instrument 12th International Conference On Miniaturized Systems For Chemistry and Life Sciences - the Proceedings of Microtas 2008 Conference. 408-410.  1
2008 Zeng Y, Kumaresan P, Toriello NM, Douglas ES, Yang CJ, Blazej RG, Cronier SA, Thaitrong N, Hsaio SCH, Francis MB, Bertozzi CR, Mathies RA. Microfluidic technologies for single cell genetic and expression analysis 12th International Conference On Miniaturized Systems For Chemistry and Life Sciences - the Proceedings of Microtas 2008 Conference. 555-557.  1
2007 Stuart CM, Frontiera RR, Mathies RA. Excited-state structure and dynamics of cis- and trans-Azobenzene from resonance Raman intensity analysis. The Journal of Physical Chemistry. A. 111: 12072-80. PMID 17985852 DOI: 10.1021/jp0751460  1
2007 Douglas ES, Chandra RA, Bertozzi CR, Mathies RA, Francis MB. Self-assembled cellular microarrays patterned using DNA barcodes. Lab On a Chip. 7: 1442-8. PMID 17960269 DOI: 10.1039/b708666k  1
2007 Toriello NM, Liu CN, Blazej RG, Thaitrong N, Mathies RA. Integrated affinity capture, purification, and capillary electrophoresis microdevice for quantitative double-stranded DNA analysis. Analytical Chemistry. 79: 8549-56. PMID 17929900 DOI: 10.1021/ac0712547  1
2007 Frontiera RR, Mathies RA. Polarization dependence of vibrational coupling signals in femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 127: 124501. PMID 17902915 DOI: 10.1063/1.2780843  1
2007 Jayarajah CN, Skelley AM, Fortner AD, Mathies RA. Analysis of neuroactive amines in fermented beverages using a portable microchip capillary electrophoresis system. Analytical Chemistry. 79: 8162-9. PMID 17892274 DOI: 10.1021/ac071306s  1
2007 Chan EM, Marcus MA, Fakra S, ElNaggar M, Mathies RA, Alivisatos AP. Millisecond kinetics of nanocrystal cation exchange using microfluidic X-ray absorption spectroscopy. The Journal of Physical Chemistry. A. 111: 12210-5. PMID 17887656 DOI: 10.1021/jp073474u  1
2007 Emrich CA, Medintz IL, Chu WK, Mathies RA. Microfabricated two-dimensional electrophoresis device for differential protein expression profiling. Analytical Chemistry. 79: 7360-6. PMID 17822308 DOI: 10.1021/ac0711485  1
2007 Stuart CM, Tauber MJ, Mathies RA. Structure and dynamics of the solvated electron in alcohols from resonance Raman spectroscopy. The Journal of Physical Chemistry. A. 111: 8390-400. PMID 17676822 DOI: 10.1021/jp068283q  1
2007 Blazej RG, Kumaresan P, Cronier SA, Mathies RA. Inline injection microdevice for attomole-scale sanger DNA sequencing. Analytical Chemistry. 79: 4499-506. PMID 17497827 DOI: 10.1021/ac070126f  1
2007 Adesokan AA, Pan D, Fredj E, Mathies RA, Gerber RB. Anharmonic vibrational calculations modeling the raman spectra of intermediates in the photoactive yellow protein (PYP) photocycle. Journal of the American Chemical Society. 129: 4584-94. PMID 17378558 DOI: 10.1021/ja066903v  0.48
2007 Liu P, Seo TS, Beyor N, Shin KJ, Scherer JR, Mathies RA. Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing. Analytical Chemistry. 79: 1881-9. PMID 17269794 DOI: 10.1021/ac061961k  1
2007 Kukura P, McCamant DW, Mathies RA. Femtosecond stimulated Raman spectroscopy. Annual Review of Physical Chemistry. 58: 461-88. PMID 17105414 DOI: 10.1146/annurev.physchem.58.032806.104456  1
2007 Jensen EC, Grover WH, Mathies RA. Micropneumatic digital logic structures for integrated microdevice computation and control Journal of Microelectromechanical Systems. 16: 1378-1385. DOI: 10.1109/JMEMS.2007.906080  1
2007 Skelley AM, Aubrey AD, Willis PA, Amashukeli X, Ehrenfreund P, Bada JL, Grunthaner FJ, Mathies RA. Organic amine biomarker detection in the Yungay region of the Atacama Desert with the Urey instrument Journal of Geophysical Research: Biogeosciences. 112. DOI: 10.1029/2006JG000329  1
2007 Yoon S, Mathies RA. Femtosecond stimulated raman study of energy transfer in allophycocyanin [3] Bulletin of the Korean Chemical Society. 28: 1639-1640.  1
2006 Skelley AM, Cleaves HJ, Jayarajah CN, Bada JL, Mathies RA. Application of the Mars Organic Analyzer to nucleobase and amine biomarker detection. Astrobiology. 6: 824-37. PMID 17155883 DOI: 10.1089/ast.2006.6.824  1
2006 Toriello NM, Liu CN, Mathies RA. Multichannel reverse transcription-polymerase chain reaction microdevice for rapid gene expression and biomarker analysis. Analytical Chemistry. 78: 7997-8003. PMID 17134132 DOI: 10.1021/ac061058k  1
2006 Paegel BM, Grover WH, Skelley AM, Mathies RA, Joyce GF. Microfluidic serial dilution circuit. Analytical Chemistry. 78: 7522-7. PMID 17073422 DOI: 10.1021/ac0608265  1
2006 Kukura P, Yoon S, Mathies RA. Femtosecond stimulated Raman spectroscopy. Analytical Chemistry. 78: 5953-9. PMID 16995280 DOI: 10.1021/ac069450l  1
2006 Skelley AM, Mathies RA. Rapid on-column analysis of glucosamine and its mutarotation by microchip capillary electrophoresis. Journal of Chromatography. A. 1132: 304-9. PMID 16919655 DOI: 10.1016/j.chroma.2006.07.082  1
2006 Yeung SH, Greenspoon SA, McGuckian A, Crouse CA, Emrich CA, Ban J, Mathies RA. Rapid and high-throughput forensic short tandem repeat typing using a 96-lane microfabricated capillary array electrophoresis microdevice. Journal of Forensic Sciences. 51: 740-7. PMID 16882214 DOI: 10.1111/j.1556-4029.2006.00153.x  1
2006 Liu CN, Toriello NM, Mathies RA. Multichannel PCR-CE microdevice for genetic analysis. Analytical Chemistry. 78: 5474-9. PMID 16878885 DOI: 10.1021/ac060335k  1
2006 Kukura P, Frontiera R, Mathies RA. Direct observation of anharmonic coupling in the time domain with femtosecond stimulated Raman scattering. Physical Review Letters. 96: 238303. PMID 16803414 DOI: 10.1103/PhysRevLett.96.238303  1
2006 Boon EM, Davis JH, Tran R, Karow DS, Huang SH, Pan D, Miazgowicz MM, Mathies RA, Marletta MA. Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase beta1 H-NOX domain. The Journal of Biological Chemistry. 281: 21892-902. PMID 16728401 DOI: 10.1074/jbc.M600557200  1
2006 Grover WH, Ivester RH, Jensen EC, Mathies RA. Development and multiplexed control of latching pneumatic valves using microfluidic logical structures. Lab On a Chip. 6: 623-31. PMID 16652177 DOI: 10.1039/b518362f  1
2006 Blazej RG, Kumaresan P, Mathies RA. Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 103: 7240-5. PMID 16648246 DOI: 10.1073/pnas.0602476103  1
2006 Chandra RA, Douglas ES, Mathies RA, Bertozzi CR, Francis MB. Programmable cell adhesion encoded by DNA hybridization. Angewandte Chemie (International Ed. in English). 45: 896-901. PMID 16370010 DOI: 10.1002/anie.200502421  1
2006 Aubrey A, Cleaves HJ, Chalmers JH, Skelley AM, Mathies RA, Grunthaner FJ, Ehrenfreund P, Bada JL. Sulfate minerals and organic compounds on Mars Geology. 34: 357-360. DOI: 10.1130/G22316.1  1
2006 Yoon S, Kukura P, Stuart CM, Mathies RA. Direct observation of the ultrafast intersystem crossing in tris(2,2′-bipyridine)ruthenium(II) using femtosecond stimulated Raman spectroscopy Molecular Physics. 104: 1275-1282. DOI: 10.1080/00268970500525846  1
2006 Shim S, Mathies RA. Generation of narrow-bandwidth picosecond visible pulses from broadband femtosecond pulses for femtosecond stimulated Raman Applied Physics Letters. 89. DOI: 10.1063/1.2356318  1
2006 Frontiera RR, Kukura P, Mathies RA. Observation of anharmonic coupling in the time domain with femtosecond stimulated Raman Optics Infobase Conference Papers 1
2006 Grover WH, Jensen EC, Ivester RHC, Mathies RA. Programmable pneumatic logical circuits for microfluidic device control Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 506-508.  1
2006 Blazej RG, Kumaresan P, Mathies RA. Microfabricated bioprocessor for nanoliter-scale Sanger DNA sequencing Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1567-1569.  1
2006 Toriello NM, Liu CN, Mathies RA. Multichannel reverse transcription-PCR microdevice for rapid multiplex gene expression analysis Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1453-1455.  1
2005 McCamant DW, Kukura P, Mathies RA. Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. The Journal of Physical Chemistry. B. 109: 10449-57. PMID 16852266 DOI: 10.1021/jp050095x  1
2005 Karow DS, Pan D, Davis JH, Behrends S, Mathies RA, Marletta MA. Characterization of functional heme domains from soluble guanylate cyclase. Biochemistry. 44: 16266-74. PMID 16331987 DOI: 10.1021/bi051601b  1
2005 Derbyshire ER, Tran R, Mathies RA, Marletta MA. Characterization of nitrosoalkane binding and activation of soluble guanylate cyclase. Biochemistry. 44: 16257-65. PMID 16331986 DOI: 10.1021/bi0515671  1
2005 Kukura P, McCamant DW, Yoon S, Wandschneider DB, Mathies RA. Structural observation of the primary isomerization in vision with femtosecond-stimulated Raman. Science (New York, N.Y.). 310: 1006-9. PMID 16284176 DOI: 10.1126/science.1118379  1
2005 Toriello NM, Douglas ES, Mathies RA. Microfluidic device for electric field-driven single-cell capture and activation. Analytical Chemistry. 77: 6935-41. PMID 16255592 DOI: 10.1021/ac051032d  1
2005 Chan EM, Alivisatos AP, Mathies RA. High-temperature microfluidic synthesis of CdSe nanocrystals in nanoliter droplets. Journal of the American Chemical Society. 127: 13854-61. PMID 16201806 DOI: 10.1021/ja051381p  1
2005 Grover WH, Mathies RA. An integrated microfluidic processor for single nucleotide polymorphism-based DNA computing. Lab On a Chip. 5: 1033-40. PMID 16175257 DOI: 10.1039/b505840f  1
2005 Kamei T, Toriello NM, Lagally ET, Blazej RG, Scherer JR, Street RA, Mathies RA. Microfluidic genetic analysis with an integrated a-Si:H detector. Biomedical Microdevices. 7: 147-52. PMID 15940430 DOI: 10.1007/s10544-005-1595-y  1
2005 Tian H, Emrich CA, Scherer JR, Mathies RA, Andersen PS, Larsen LA, Christiansen M. High-throughput single-strand conformation polymorphism analysis on a microfabricated capillary array electrophoresis device. Electrophoresis. 26: 1834-42. PMID 15706574 DOI: 10.1002/elps.200410205  1
2005 Skelley AM, Scherer JR, Aubrey AD, Grover WH, Ivester RH, Ehrenfreund P, Grunthaner FJ, Bada JL, Mathies RA. Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars. Proceedings of the National Academy of Sciences of the United States of America. 102: 1041-6. PMID 15657130 DOI: 10.1073/pnas.0406798102  1
2005 Yoon S, McCamant DW, Kukura P, Mathies RA, Zhang D, Lee SY. Dependence of line shapes in femtosecond broadband stimulated Raman spectroscopy on pump-probe time delay. The Journal of Chemical Physics. 122: 024505. PMID 15638596 DOI: 10.1063/1.1828044  1
2005 Bada JL, Sephton MA, Ehrenfreund P, Mathies RA, Skelley AM, Grunthaner FJ, Zent AP, Quinn RC, Josset JL, Robert F, Botta O, Glavin DP. New strategies to detect life on Mars Astronomy and Geophysics. 46: 6.26-6.27. DOI: 10.1111/j.1468-4004.2005.46626.x  1
2005 Chan EM, Alivisatos AP, Mathies RA. HIGH-temperature microfluidic synthesis of semiconductor nanocrystals in nanoliter droplets Micro Total Analysis Systems - Proceedings of Microtas 2005 Conference: 9th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1: 921-923.  1
2005 Douglas ES, Toriello NM, Mathies RA. Microfluidic device for electric-field driven single-cell capture and activation Micro Total Analysis Systems - Proceedings of Microtas 2005 Conference: 9th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1: 391-393.  1
2004 McCamant DW, Kukura P, Yoon S, Mathies RA. Femtosecond broadband stimulated Raman spectroscopy: Apparatus and methods. The Review of Scientific Instruments. 75: 4971-80. PMID 17183413 DOI: 10.1063/1.1807566  1
2004 Kukura P, McCamant DW, Mathies RA. Femtosecond Time-Resolved Stimulated Raman Spectroscopy of the S(2) (1B(u)) Excited State of beta-Carotene. The Journal of Physical Chemistry. A. 108: 5921-5. PMID 16633549 DOI: 10.1021/jp0482971  1
2004 Doherty EA, Kan CW, Paegel BM, Yeung SH, Cao S, Mathies RA, Barron AE. Sparsely cross-linked "nanogel" matrixes as fluid, mechanically stabilized polymer networks for high-throughput microchannel DNA sequencing. Analytical Chemistry. 76: 5249-56. PMID 15362880 DOI: 10.1021/ac049721x  1
2004 Yan ECY, Ganim Z, Kazmi MA, Chang BSW, Sakmar TP, Mathies RA. Resonance raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct Biochemistry. 43: 10867-10876. PMID 15323547 DOI: 10.1021/bi0400148  1
2004 Lee SY, Zhang D, McCamant DW, Kukura P, Mathies RA. Theory of femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 121: 3632-42. PMID 15303930 DOI: 10.1063/1.1777214  1
2004 Karow DS, Pan D, Tran R, Pellicena P, Presley A, Mathies RA, Marletta MA. Spectroscopic characterization of the soluble guanylate cyclase-like heme domains from Vibrio cholerae and Thermoanaerobacter tengcongensis. Biochemistry. 43: 10203-11. PMID 15287748 DOI: 10.1021/bi049374l  1
2004 Ertl P, Emrich CA, Singhal P, Mathies RA. Capillary electrophoresis chips with a sheath-flow supported electrochemical detection system. Analytical Chemistry. 76: 3749-55. PMID 15228350 DOI: 10.1021/ac035282a  1
2004 Bromberg A, Mathies RA. Multichannel homogeneous immunoassay for detection of 2,4,6-trinitrotoluene (TNT) using a microfabricated capillary array electrophoresis chip. Electrophoresis. 25: 1895-900. PMID 15213990 DOI: 10.1002/elps.200305818  1
2004 Lagally ET, Scherer JR, Blazej RG, Toriello NM, Diep BA, Ramchandani M, Sensabaugh GF, Riley LW, Mathies RA. Integrated portable genetic analysis microsystem for pathogen/infectious disease detection. Analytical Chemistry. 76: 3162-70. PMID 15167797 DOI: 10.1021/ac035310p  1
2004 Pan D, Philip A, Hoff WD, Mathies RA. Time-resolved resonance raman structural studies of the pB' intermediate in the photocycle of photoactive yellow protein. Biophysical Journal. 86: 2374-82. PMID 15041675 DOI: 10.1016/S0006-3495(04)74294-0  1
2004 Tauber MJ, Stuart CM, Mathies RA. Resonance Raman spectra of electrons solvated in liquid alcohols. Journal of the American Chemical Society. 126: 3414-5. PMID 15025455 DOI: 10.1021/ja031816d  1
2004 Lagally ET, Mathies RA. Integrated genetic analysis microsystems Journal of Physics D: Applied Physics. 37: R245-R261. DOI: 10.1088/0022-3727/37/23/R01  1
2004 Drake IJ, Liu TCN, Gilles M, Tyliszczak T, Kilcoyne ALD, Shuh DK, Mathies RA, Bell AT. An in situ cell for characterization of solids by soft x-ray absorption Review of Scientific Instruments. 75: 3242-3247. DOI: 10.1063/1.1791320  1
2004 Kamei T, Paegel BM, Scherer JR, Skelley AM, Street RA, Mathies RA. Fusion of a-Si:H sensor technology with microfluidic bioanalytical devices Journal of Non-Crystalline Solids. 338: 715-719. DOI: 10.1016/j.jnoncrysol.2004.03.117  1
2004 Skelley AM, Scherer JR, Aubrey AD, Ivester RHC, Ehrenfreund P, Grunthaner FJ, Bada JL, Mathies RA. Sensitive amino acid composition and chirality analysis with the Mars Organic Analyzer (MOA) International Astronautical Federation - 55th International Astronautical Congress 2004. 3: 1564-1568.  1
2003 McCamant DW, Kukura P, Mathies RA. Femtosecond Time-Resolved Stimulated Raman Spectroscopy: Application to the Ultrafast Internal Conversion in beta-Carotene. The Journal of Physical Chemistry. A. 107: 8208-14. PMID 16710440 DOI: 10.1021/jp030147n  1
2003 Skelley AM, Mathies RA. Chiral separation of fluorescamine-labeled amino acids using microfabricated capillary electrophoresis devices for extraterrestrial exploration. Journal of Chromatography. A. 1021: 191-9. PMID 14735988 DOI: 10.1016/j.chroma.2003.08.096  1
2003 Kamei T, Paegel BM, Scherer JR, Skelley AM, Street RA, Mathies RA. Integrated hydrogenated amorphous Si photodiode detector for microfluidic bioanalytical devices. Analytical Chemistry. 75: 5300-5. PMID 14710806 DOI: 10.1021/ac0301550  1
2003 McCamant DW, Kukura P, Mathies RA. Femtosecond broadband stimulated Raman: a new approach for high-performance vibrational spectroscopy. Applied Spectroscopy. 57: 1317-23. PMID 14658143 DOI: 10.1366/000370203322554455  1
2003 Yan ECY, Kazmi MA, Ganim Z, Hou JM, Pan D, Chang BSW, Sakmar TP, Mathies RA. Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin Proceedings of the National Academy of Sciences of the United States of America. 100: 9262-9267. PMID 12835420 DOI: 10.1073/pnas.1531970100  1
2003 Kim JE, Pan D, Mathies RA. Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy. Biochemistry. 42: 5169-75. PMID 12731857 DOI: 10.1021/bi030026d  1
2003 Kim JE, Tauber MJ, Mathies RA. Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin. Biophysical Journal. 84: 2492-501. PMID 12668457 DOI: 10.1016/S0006-3495(03)75054-1  1
2003 Blazej RG, Paegel BM, Mathies RA. Polymorphism ratio sequencing: a new approach for single nucleotide polymorphism discovery and genotyping. Genome Research. 13: 287-93. PMID 12566407 DOI: 10.1101/gr.396203  1
2003 Paegel BM, Blazej RG, Mathies RA. Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis. Current Opinion in Biotechnology. 14: 42-50. PMID 12566001 DOI: 10.1016/S0958-1669(02)00004-6  1
2003 Tauber MJ, Mathies RA. Structure of the aqueous solvated electron from resonance Raman spectroscopy: lessons from isotopic mixtures. Journal of the American Chemical Society. 125: 1394-402. PMID 12553843 DOI: 10.1021/ja021134a  1
2003 Tauber MJ, Mathies RA, Chen X, Bradforth SE. Flowing liquid sample jet for resonance Raman and ultrafast optical spectroscopy Review of Scientific Instruments. 74: 4958-4960. DOI: 10.1063/1.1614874  1
2003 Grover WH, Skelley AM, Liu CN, Lagally ET, Mathies RA. Monolithic membrane valves and diaphragm pumps for practical large-scale integration into glass microfluidic devices Sensors and Actuators, B: Chemical. 89: 315-323. DOI: 10.1016/S0925-4005(02)00468-9  1
2003 Kukura P, McCamant DW, Davis PH, Mathies RA. Vibrational structure of the S2 (1Bu) excited state of diphenyloctatetraene observed by femtosecond stimulated Raman spectroscopy Chemical Physics Letters. 382: 81-86. DOI: 10.1016/j.cplett.2003.10.051  1
2003 Blazej RG, Paegel BM, Emrich CA, Mathies RA. Microfabricated capillary array electrophoresis. Implementation and applications. Lab-On-a-Chip: Miniaturized Systems For (Bio) Chemical Analysis and Synthesis. 231-247. DOI: 10.1016/B978-044451100-3/50012-7  1
2003 Kamei T, Scherer JR, Paegel BM, Lagally ET, Skelley AM, Street RA, Mathies RA. Microfluidic Genetic and Amino Acid Analysis using an Integrated a-Si:H Detector Proceedings of Ieee Sensors. 2: 1049-1053.  1
2002 McCamant DW, Kim JE, Mathies RA. Vibrational Relaxation in beta-Carotene Probed by Picosecond Stokes and Anti-Stokes Resonance Raman Spectroscopy. The Journal of Physical Chemistry. A. 106: 6030-8. PMID 17235377 DOI: 10.1021/jp0203595  1
2002 Kim JE, Mathies RA. Anti-stokes Raman study of vibrational cooling dynamics in the primary photochemistry of rhodopsin. The Journal of Physical Chemistry. A. 106: 8508-15. PMID 16552447 DOI: 10.1021/jp021069r  1
2002 Paegel BM, Yeung SH, Mathies RA. Microchip bioprocessor for integrated nanovolume sample purification and DNA sequencing. Analytical Chemistry. 74: 5092-8. PMID 12380835 DOI: 10.1021/ac0203645  1
2002 Emrich CA, Tian H, Medintz IL, Mathies RA. Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis. Analytical Chemistry. 74: 5076-83. PMID 12380833 DOI: 10.1021/ac020236g  1
2002 Medintz I, Wong WW, Mathies RA. Fluorescence labeling methods for microchannel plate capillary electrophoresis DNA sizing. Journal of Capillary Electrophoresis and Microchip Technology. 7: 43-9. PMID 12212908  0.32
2002 Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA. Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate. Journal of the American Chemical Society. 124: 4857-64. PMID 11971736 DOI: 10.1021/ja012666e  1
2002 Yan ECY, Kazmi MA, De S, Chang BSW, Seibert C, Marin EP, Mathies RA, Sakmar TP. Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II Biochemistry. 41: 3620-3627. PMID 11888278 DOI: 10.1021/bi0160011  1
2002 Medintz IL, Berti L, Mathies RA. Novel energy transfer fluorescence labeling cassette. Biotechniques. 32: 270, 272. PMID 11848400  0.64
2002 Paegel BM, Emrich CA, Wedemayer GJ, Scherer JR, Mathies RA. High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor. Proceedings of the National Academy of Sciences of the United States of America. 99: 574-9. PMID 11792836 DOI: 10.1073/pnas.012608699  1
2001 Kim JE, McCamant DW, Zhu L, Mathies RA. Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds. The Journal of Physical Chemistry. B. 105: 1240-9. PMID 16755302 DOI: 10.1021/jp001236s  1
2001 Lagally ET, Emrich CA, Mathies RA. Fully integrated PCR-capillary electrophoresis microsystem for DNA analysis. Lab On a Chip. 1: 102-7. PMID 15100868 DOI: 10.1039/b109031n  1
2001 Scherer JR, Paegel BM, Wedemayer GJ, Emrich CA, Lo J, Medintz IL, Mathies RA. High-pressure gel loader for capillary array electrophoresis microchannel plates. Biotechniques. 31: 1150-2, 1154. PMID 11730021  1
2001 Kim JE, Tauber MJ, Mathies RA. Wavelength dependent cis-trans isomerization in vision. Biochemistry. 40: 13774-8. PMID 11705366 DOI: 10.1021/bi0116137  1
2001 Medintz IL, Paegel BM, Blazej RG, Emrich CA, Berti L, Scherer JR, Mathies RA. High-performance genetic analysis using microfabricated capillary array electrophoresis microplates. Electrophoresis. 22: 3845-56. PMID 11700713 DOI: 10.1002/1522-2683(200110)22:18<3845::AID-ELPS3845>3.0.CO;2-0  1
2001 Medintz IL, Paegel BM, Mathies RA. Microfabricated capillary array electrophoresis DNA analysis systems. Journal of Chromatography. A. 924: 265-70. PMID 11521873 DOI: 10.1016/S0021-9673(01)00852-4  1
2001 Medintz IL, Berti L, Emrich CA, Tom J, Scherer JR, Mathies RA. Genotyping energy-transfer-cassette-labeled short-tandem-repeat amplicons with capillary array electrophoresis microchannel plates. Clinical Chemistry. 47: 1614-21. PMID 11514394  1
2001 Berti L, Medintz IL, Tom J, Mathies RA. Energy-transfer cassette labeling for capillary array electrophoresis short tandem repeat DNA fragment sizing. Bioconjugate Chemistry. 12: 493-500. PMID 11459452  0.64
2001 Pan D, Mathies RA. Chromophore structure in lumirhodopsin and metarhodopsin I by time-resolved resonance Raman microchip spectroscopy. Biochemistry. 40: 7929-36. PMID 11425321  0.48
2001 Berti L, Xie J, Medintz IL, Glazer AN, Mathies RA. Energy transfer cassettes for facile labeling of sequencing and PCR primers. Analytical Biochemistry. 292: 188-97. PMID 11355850 DOI: 10.1006/abio.2001.5069  1
2001 Medintz I, Wong WW, Berti L, Shiow L, Tom J, Scherer J, Sensabaugh G, Mathies RA. High-performance multiplex SNP analysis of three hemochromatosis-related mutations with capillary array electrophoresis microplates. Genome Research. 11: 413-21. PMID 11230165 DOI: 10.1101/gr.164701  1
2001 Lagally ET, Medintz I, Mathies RA. Single-molecule DNA amplification and analysis in an integrated microfluidic device. Analytical Chemistry. 73: 565-70. PMID 11217764  0.68
2001 Wedemayer GJ, Medintz I, Wong WW, Scherer JR, Mathies RA. Conversion of capillary electrophoresis microchip genotyping data for analysis with Genetic Profiler software. Biotechniques. 30: 122-8. PMID 11196302  1
2000 Medintz IL, Lee CC, Wong WW, Pirkola K, Sidransky D, Mathies RA. Loss of heterozygosity assay for molecular detection of cancer using energy-transfer primers and capillary array electrophoresis. Genome Research. 10: 1211-8. PMID 10958639  0.64
2000 Medintz I, Wong WW, Sensabaugh G, Mathies RA. High speed single nucleotide polymorphism typing of a hereditary haemochromatosis mutation with capillary array electrophoresis microplates. Electrophoresis. 21: 2352-8. PMID 10939445 DOI: 10.1002/1522-2683(20000701)21:12<2352::AID-ELPS2352>3.0.CO;2-G  1
2000 Paegel BM, Hutt LD, Simpson PC, Mathies RA. Turn geometry for minimizing band broadening in microfabricated capillary electrophoresis channels. Analytical Chemistry. 72: 3030-7. PMID 10939363 DOI: 10.1021/ac000054r  1
2000 Andel F, Murphy JT, Haas JA, McDowell MT, van der Hoef I, Lugtenburg J, Lagarias JC, Mathies RA. Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues. Biochemistry. 39: 2667-76. PMID 10704217 DOI: 10.1021/bi991688z  1
1999 Haab BB, Mathies RA. Single-molecule detection of DNA separations in microfabricated capillary electrophoresis chips employing focused molecular streams. Analytical Chemistry. 71: 5137-45. PMID 11419480 DOI: 10.1021/ac990644t  1
1999 Shi Y, Simpson PC, Scherer JR, Wexler D, Skibola C, Smith MT, Mathies RA. Radial capillary array electrophoresis microplate and scanner for high-performance nucleic acid analysis. Analytical Chemistry. 71: 5354-61. PMID 10596215 DOI: 10.1021/ac990518p  1
1999 Hutt LD, Glavin DP, Bada JL, Mathies RA. Microfabricated capillary electrophoresis amino acid chirality analyzer for extraterrestrial exploration Analytical Chemistry. 71: 4000-4006. PMID 10500487 DOI: 10.1021/ac9903959  1
1999 Kochendoerfer GG, Lin SW, Sakmar TP, Mathies RA. How color visual pigments are tuned. Trends in Biochemical Sciences. 24: 300-5. PMID 10431173 DOI: 10.1016/S0968-0004(99)01432-2  1
1999 Scherer JR, Kheterpal I, Radhakrishnan A, Ja WW, Mathies RA. Ultra-high throughput rotary capillary array electrophoresis scanner for fluorescent DNA sequencing and analysis. Electrophoresis. 20: 1508-17. PMID 10424474 DOI: 10.1002/(SICI)1522-2683(19990601)20:7<1508::AID-ELPS1508>3.0.CO;2-7  1
1999 Liu S, Shi Y, Ja WW, Mathies RA. Optimization of high-speed DNA sequencing on microfabricated capillary electrophoresis channels. Analytical Chemistry. 71: 566-73. PMID 9989377 DOI: 10.1021/ac980783v  1
1999 Kheterpal I, Mathies RA. Capillary array electrophoresis DNA sequencing. Analytical Chemistry. 71: 31A-37A. PMID 9921121  0.6
1998 Lin SW, Kochendoerfer GG, Carroll KS, Wang D, Mathies RA, Sakmar TP. Mechanisms of spectral tuning in blue cone visual pigments. Visible and raman spectroscopy of blue-shifted rhodopsin mutants. The Journal of Biological Chemistry. 273: 24583-91. PMID 9733753 DOI: 10.1074/jbc.273.38.24583  1
1998 Kheterpal I, Li L, Speed TP, Mathies RA. A three-wavelength labeling approach for DNA sequencing using energy transfer primers and capillary electrophoresis. Electrophoresis. 19: 1403-14. PMID 9694290 DOI: 10.1002/elps.1150190835  0.6
1998 Woolley AT, Lao K, Glazer AN, Mathies RA. Capillary electrophoresis chips with integrated electrochemical detection. Analytical Chemistry. 70: 684-8. PMID 9491753  1
1998 Simpson PC, Roach D, Woolley AT, Thorsen T, Johnston R, Sensabaugh GF, Mathies RA. High-throughput genetic analysis using microfabricated 96-sample capillary array electrophoresis microplates. Proceedings of the National Academy of Sciences of the United States of America. 95: 2256-61. PMID 9482872 DOI: 10.1073/pnas.95.5.2256  1
1998 Hung SC, Mathies RA, Glazer AN. Comparison of fluorescence energy transfer primers with different donor-acceptor dye combinations. Analytical Biochemistry. 255: 32-8. PMID 9448839 DOI: 10.1006/abio.1997.2451  1
1997 Clark SM, Mathies RA. Multiplex dsDNA Fragment Sizing Using Dimeric Intercalation Dyes and Capillary Array Electrophoresis:  Ionic Effects on the Stability and Electrophoretic Mobility of DNA-Dye Complexes. Analytical Chemistry. 69: 1355-63. PMID 21639343 DOI: 10.1021/ac960866g  0.52
1997 Kochendoerfer GG, Kaminaka S, Mathies RA. Ultraviolet resonance Raman examination of the light-induced protein structural changes in rhodopsin activation. Biochemistry. 36: 13153-9. PMID 9376376 DOI: 10.1021/bi971541c  0.48
1997 Wang Y, Hung SC, Linn JF, Steiner G, Glazer AN, Sidransky D, Mathies RA. Microsatellite-based cancer detection using capillary array electrophoresis and energy-transfer fluorescent primers. Electrophoresis. 18: 1742-9. PMID 9372265 DOI: 10.1002/elps.1150181007  1
1997 Zeng Z, Clark SM, Mathies RA, Glazer AN. Improved stability and electrophoretic properties of preformed fluorescent cationic dye-DNA complexes in a taps-tetrapentylammonium buffer in agarose slab gels. Analytical Biochemistry. 252: 110-4. PMID 9324948 DOI: 10.1006/abio.1997.2303  1
1997 Hung SC, Mathies RA, Glazer AN. Optimization of spectroscopic and electrophoretic properties of energy transfer primers. Analytical Biochemistry. 252: 78-88. PMID 9324944 DOI: 10.1006/abio.1997.2287  1
1997 Cherepy NJ, Shreve AP, Moore LJ, Boxer SG, Mathies RA. Temperature dependence of the Qy resonance Raman spectra of bacteriochlorophylls, the primary electron donor, and bacteriopheophytins in the bacterial photosynthetic reaction center. Biochemistry. 36: 8559-66. PMID 9214301 DOI: 10.1021/bi970024r  1
1997 Kochendoerfer GG, Wang Z, Oprian DD, Mathies RA. Resonance Raman examination of the wavelength regulation mechanism in human visual pigments. Biochemistry. 36: 6577-87. PMID 9184137 DOI: 10.1021/bi970322o  1
1997 Woolley AT, Sensabaugh GF, Mathies RA. High-speed DNA genotyping using microfabricated capillary array electrophoresis chips. Analytical Chemistry. 69: 2181-6. PMID 9183181  1
1997 Glazer AN, Mathies RA. Energy-transfer fluorescent reagents for DNA analyses. Current Opinion in Biotechnology. 8: 94-102. PMID 9013654 DOI: 10.1016/S0958-1669(97)80163-2  1
1996 Kheterpal I, Scherer JR, Clark SM, Radhakrishnan A, Ju J, Ginther CL, Sensabaugh GF, Mathies RA. DNA sequencing using a four-color confocal fluorescence capillary array scanner. Electrophoresis. 17: 1852-9. PMID 9034766 DOI: 10.1002/elps.1150171209  1
1996 Kochendoerfer GG, Verdegem PJ, van der Hoef I, Lugtenburg J, Mathies RA. Retinal analog study of the role of steric interactions in the excited state isomerization dynamics of rhodopsin. Biochemistry. 35: 16230-40. PMID 8973196 DOI: 10.1021/bi961951l  0.52
1996 Hung SC, Ju J, Mathies RA, Glazer AN. Cyanine dyes with high absorption cross section as donor chromophores in energy transfer primers. Analytical Biochemistry. 243: 15-27. PMID 8954521 DOI: 10.1006/abio.1996.0477  1
1996 Woolley AT, Hadley D, Landre P, deMello AJ, Mathies RA, Northrup MA. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Analytical Chemistry. 68: 4081-6. PMID 8946790  1
1996 Wang Y, Wallin JM, Ju J, Sensabaugh GF, Mathies RA. High-resolution capillary array electrophoretic sizing of multiplexed short tandem repeat loci using energy-transfer fluorescent primers. Electrophoresis. 17: 1485-90. PMID 8905265 DOI: 10.1002/elps.1150170913  1
1996 Hung SC, Ju J, Mathies RA, Glazer AN. Energy transfer primers with 5- or 6-carboxyrhodamine-6G as acceptor chromophores. Analytical Biochemistry. 238: 165-70. PMID 8660606 DOI: 10.1006/abio.1996.0270  1
1996 Ju J, Glazer AN, Mathies RA. Cassette labeling for facile construction of energy transfer fluorescent primers. Nucleic Acids Research. 24: 1144-8. PMID 8604350 DOI: 10.1093/nar/24.6.1144  1
1996 Ju J, Glazer AN, Mathies RA. Energy transfer primers: a new fluorescence labeling paradigm for DNA sequencing and analysis. Nature Medicine. 2: 246-9. PMID 8574973 DOI: 10.1038/nm0296-246  1
1995 Haab BB, Mathies RA. Single molecule fluorescence burst detection of DNA fragments separated by capillary electrophoresis. Analytical Chemistry. 67: 3253-60. PMID 11407410  1
1995 Ju J, Kheterpal I, Scherer JR, Ruan C, Fuller CW, Glazer AN, Mathies RA. Design and synthesis of fluorescence energy transfer dye-labeled primers and their application for DNA sequencing and analysis. Analytical Biochemistry. 231: 131-40. PMID 8678292 DOI: 10.1006/abio.1995.1512  1
1995 Woolley AT, Mathies RA. Ultra-high-speed DNA sequencing using capillary electrophoresis chips. Analytical Chemistry. 67: 3676-80. PMID 8644919  1
1995 Ju J, Ruan C, Fuller CW, Glazer AN, Mathies RA. Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis. Proceedings of the National Academy of Sciences of the United States of America. 92: 4347-51. PMID 7753809  1
1995 Kim M, Mathies RA, Hoff WD, Hellingwerf KJ. Resonance Raman evidence that the thioester-linked 4-hydroxycinnamyl chromophore of photoactive yellow protein is deprotonated. Biochemistry. 34: 12669-72. PMID 7548018  1
1995 Wang Y, Ju J, Carpenter BA, Atherton JM, Sensabaugh GF, Mathies RA. Rapid sizing of short tandem repeat alleles using capillary array electrophoresis and energy-transfer fluorescent primers. Analytical Chemistry. 67: 1197-203. PMID 7537476  1
1994 Lin SW, Imamoto Y, Fukada Y, Shichida Y, Yoshizawa T, Mathies RA. What makes red visual pigments red? A resonance Raman microprobe study of retinal chromophore structure in iodopsin. Biochemistry. 33: 2151-60. PMID 8117671  0.48
1994 Zhu H, Clark SM, Benson SC, Rye HS, Glazer AN, Mathies RA. High-sensitivity capillary electrophoresis of double-stranded DNA fragments using monomeric and dimeric fluorescent intercalating dyes. Analytical Chemistry. 66: 1941-8. PMID 8067520  0.68
1994 Woolley AT, Mathies RA. Ultra-high-speed DNA fragment separations using microfabricated capillary array electrophoresis chips. Proceedings of the National Academy of Sciences of the United States of America. 91: 11348-52. PMID 7972062  1
1994 Wang Q, Schoenlein RW, Peteanu LA, Mathies RA, Shank CV. Vibrationally coherent photochemistry in the femtosecond primary event of vision Science. 266: 422-424. PMID 7939680  1
1992 Ames JB, Ros M, Raap J, Lugtenburg J, Mathies RA. Time-resolved ultraviolet resonance Raman studies of protein structure: application to bacteriorhodopsin. Biochemistry. 31: 5328-34. PMID 1606157  0.92
1992 Ames JB, Raap J, Lugtenburg J, Mathies RA. Resonance Raman study of halorhodopsin photocycle kinetics, chromophore structure, and chloride-pumping mechanism. Biochemistry. 31: 12546-54. PMID 1472492  0.92
1991 Mathies RA, Lin SW, Ames JB, Pollard WT. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annual Review of Biophysics and Biophysical Chemistry. 20: 491-518. PMID 1867724 DOI: 10.1146/annurev.bb.20.060191.002423  0.92
1990 Mathies RA, Peck K, Stryer L. Optimization of high-sensitivity fluorescence detection. Analytical Chemistry. 62: 1786-91. PMID 2240569  1
1990 Ames JB, Mathies RA. The role of back-reactions and proton uptake during the N----O transition in bacteriorhodopsin's photocycle: a kinetic resonance Raman study. Biochemistry. 29: 7181-90. PMID 2169875  0.92
1989 Ames JB, Fodor SP, Gebhard R, Raap J, van den Berg EM, Lugtenburg J, Mathies RA. Bacteriorhodopsin's M412 intermediate contains a 13-cis, 14-s-trans, 15-anti-retinal Schiff base chromophore. Biochemistry. 28: 3681-7. PMID 2751988  0.92
1989 Peck K, Stryer L, Glazer AN, Mathies RA. Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. Proceedings of the National Academy of Sciences of the United States of America. 86: 4087-91. PMID 2726766  1
1988 Fodor SP, Ames JB, Gebhard R, van den Berg EM, Stoeckenius W, Lugtenburg J, Mathies RA. Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism. Biochemistry. 27: 7097-101. PMID 2848578  1
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