Richard Alfred Mathies - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
biophysical chemistry
Website:
http://chemistry.berkeley.edu/faculty/chem/mathies

356 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rothbauer M, Charwat V, Bachmann B, Sticker D, Novak R, Wanzenböck H, Mathies RA, Ertl P. Monitoring transient cell-to-cell interactions in a multi-layered and multi-functional allergy-on-a-chip system. Lab On a Chip. PMID 31070645 DOI: 10.1039/C9Lc00108E  0.508
2019 Ellis SR, Dietze DR, Rangel T, Brown-Altvater F, Neaton JB, Mathies RA. Resonance Raman Characterization of Tetracene Monomer and Nanocrystals: Excited State Lattice Distortions with Implications for Efficient Singlet Fission. The Journal of Physical Chemistry. A. PMID 30952191 DOI: 10.1021/Acs.Jpca.9B02986  0.315
2019 Qin P, Park M, Alfson K, Tamhankar M, Carrion R, Patterson J, Griffiths A, He Q, Yildiz A, Mathies RA, Du K. Rapid and Fully Microfluidic Ebola Virus Detection with CRISPR-Cas13a. Acs Sensors. PMID 30860365 DOI: 10.1021/Acssensors.9B00239  0.539
2018 Park M, Neukirch AJ, Reyes-Lillo SE, Lai M, Ellis SR, Dietze D, Neaton JB, Yang P, Tretiak S, Mathies RA. Excited-state vibrational dynamics toward the polaron in methylammonium lead iodide perovskite. Nature Communications. 9: 2525. PMID 29955070 DOI: 10.1038/S41467-018-04946-7  0.33
2018 Ellis SR, Hoffman DP, Park M, Mathies RA. Difference Bands in Time Resolved Femtosecond Stimulated Raman Spectra of Photoexcited Intermolecular Electron Transfer from Chloronapthalene to Tetracyanoetheylene. The Journal of Physical Chemistry. A. PMID 29558802 DOI: 10.1021/Acs.Jpca.8B00318  0.629
2018 Schnedermann C, Yang X, Liebel M, Spillane KM, Lugtenburg J, Fernández I, Valentini A, Schapiro I, Olivucci M, Kukura P, Mathies RA. Evidence for a vibrational phase-dependent isotope effect on the photochemistry of vision. Nature Chemistry. PMID 29556051 DOI: 10.1038/S41557-018-0014-Y  0.788
2018 Duca ZA, Tan GK, Cantrell T, Van Enige M, Dorn M, Cato M, Speller NC, Pital A, Mathies RA, Stockton AM. Operation of pneumatically-actuated membrane-based microdevices for in situ analysis of extraterrestrial organic molecules after prolonged storage and in multiple orientations with respect to Earth’s gravitational field Sensors and Actuators B: Chemical. 272: 229-235. DOI: 10.1016/J.Snb.2018.05.040  0.674
2017 Du K, Park M, Griffiths A, Carrion R, Patterson J, Schmidt H, Mathies RA. Microfluidic System for Detection of Viral RNA in Blood using a Barcode Fluorescence Reporter and a Photo-Cleavable Capture Probe. Analytical Chemistry. PMID 29073356 DOI: 10.1021/Acs.Analchem.7B03527  0.558
2017 Mathies RA, Razu ME, Kim J, Stockton AM, Turin P, Butterworth A. Feasibility of Detecting Bioorganic Compounds in Enceladus Plumes with the Enceladus Organic Analyzer. Astrobiology. 17: 902-912. PMID 28915087 DOI: 10.1089/Ast.2017.1660  0.683
2017 Park M, Kornienko N, Reyes-Lillo SE, Lai M, Neaton JB, Yang P, Mathies RA. Critical Role of Methylammonium Librational Motion in Methylammonium Lead Iodide (CH3NH3PbI3) Perovskite Photochemistry. Nano Letters. PMID 28562052 DOI: 10.1021/Acs.Nanolett.7B00919  0.319
2017 Du K, Cai H, Park M, Wall TA, Stott MA, Alfson KJ, Griffiths A, Carrion R, Patterson JL, Hawkins AR, Schmidt H, Mathies RA. Multiplexed efficient on-chip sample preparation and sensitive amplification-free detection of Ebola virus. Biosensors & Bioelectronics. 91: 489-496. PMID 28073029 DOI: 10.1016/J.Bios.2016.12.071  0.568
2016 Duberow DP, Brait M, Hoque MO, Theodorescu D, Sidransky D, Dasgupta S, Mathies RA. High-performance detection of somatic D-loop mutation in urothelial cell carcinoma patients by polymorphism ratio sequencing. Journal of Molecular Medicine (Berlin, Germany). PMID 27030170 DOI: 10.1007/S00109-016-1407-2  0.77
2016 Hoffman DP, Mathies RA. Femtosecond Stimulated Raman Exposes the Role of Vibrational Coherence in Condensed-Phase Photoreactivity. Accounts of Chemical Research. PMID 27003235 DOI: 10.1021/Acs.Accounts.5B00508  0.644
2016 Dietze DR, Mathies RA. Femtosecond stimulated Raman spectroscopy. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26919612 DOI: 10.1002/Cphc.201600104  0.326
2016 Kim J, Stockton AM, Jensen EC, Mathies RA. Pneumatically actuated microvalve circuits for programmable automation of chemical and biochemical analysis. Lab On a Chip. PMID 26864083 DOI: 10.1039/C5Lc01397F  0.753
2016 Linshiz G, Jensen E, Stawski N, Bi C, Elsbree N, Jiao H, Kim J, Mathies R, Keasling JD, Hillson NJ. End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. Journal of Biological Engineering. 10: 3. PMID 26839585 DOI: 10.1186/S13036-016-0024-5  0.559
2015 Jung YK, Kim J, Mathies RA. Microfluidic hydrogel arrays for direct genotyping of clinical samples. Biosensors & Bioelectronics. 79: 371-378. PMID 26735871 DOI: 10.1016/J.Bios.2015.12.068  0.326
2015 Dasgupta J, Heyne K, Yang Y, Mathies R. Non-bonded interactions drive the sub-picosecond bilin photoisomerization in the Pfr state of phytochrome Cph1. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26630441 DOI: 10.1002/Cphc.201501073  0.712
2015 Cai H, Parks JW, Wall TA, Stott MA, Stambaugh A, Alfson K, Griffiths A, Mathies RA, Carrion R, Patterson JL, Hawkins AR, Schmidt H. Optofluidic analysis system for amplification-free, direct detection of Ebola infection. Scientific Reports. 5: 14494. PMID 26404403 DOI: 10.1038/Srep14494  0.31
2015 Hoffman DP, Leblebici SY, Schwartzberg AM, Mathies RA. Exciton Mobility in Organic Photovoltaic Heterojunctions from Femtosecond Stimulated Raman. The Journal of Physical Chemistry Letters. 6: 2919-23. PMID 26267181 DOI: 10.1021/Acs.Jpclett.5B01436  0.634
2015 Novak R, Hart K, Mathies RA. Single cell measurement of telomerase expression and splicing using microfluidic emulsion cultures. Nucleic Acids Research. 43: e104. PMID 26202962 DOI: 10.1093/Nar/Gkv477  0.496
2015 Valley DT, Hoffman DP, Mathies RA. Reactive and unreactive pathways in a photochemical ring opening reaction from 2D femtosecond stimulated Raman. Physical Chemistry Chemical Physics : Pccp. 17: 9231-40. PMID 25761064 DOI: 10.1039/C4Cp05323K  0.638
2015 Geng T, Mathies RA. Minimizing inhibition of PCR-STR typing using digital agarose droplet microfluidics. Forensic Science International. Genetics. 14: 203-9. PMID 25450795 DOI: 10.1016/J.Fsigen.2014.10.007  0.316
2014 Parks JW, Olson MA, Kim J, Ozcelik D, Cai H, Carrion R, Patterson JL, Mathies RA, Hawkins AR, Schmidt H. Integration of programmable microfluidics and on-chip fluorescence detection for biosensing applications. Biomicrofluidics. 8: 054111. PMID 25584111 DOI: 10.1063/1.4897226  0.309
2014 El Muslemany KM, Twite AA, ElSohly AM, Obermeyer AC, Mathies RA, Francis MB. Photoactivated bioconjugation between ortho-azidophenols and anilines: a facile approach to biomolecular photopatterning. Journal of the American Chemical Society. 136: 12600-6. PMID 25171554 DOI: 10.1021/Ja503056X  0.781
2014 Hoffman DP, Ellis SR, Mathies RA. Characterization of a conical intersection in a charge-transfer dimer with two-dimensional time-resolved stimulated Raman spectroscopy. The Journal of Physical Chemistry. A. 118: 4955-65. PMID 24932925 DOI: 10.1021/Jp5041986  0.65
2014 De Re E, Schlau-Cohen GS, Leverenz RL, Huxter VM, Oliver TA, Mathies RA, Fleming GR. Insights into the structural changes occurring upon photoconversion in the orange carotenoid protein from broadband two-dimensional electronic spectroscopy. The Journal of Physical Chemistry. B. 118: 5382-9. PMID 24779893 DOI: 10.1021/Jp502120H  0.509
2014 Polli D, Weingart O, Brida D, Poli E, Maiuri M, Spillane KM, Bottoni A, Kukura P, Mathies RA, Cerullo G, Garavelli M. Wavepacket splitting and two-pathway deactivation in the photoexcited visual pigment isorhodopsin. Angewandte Chemie (International Ed. in English). 53: 2504-7. PMID 24481600 DOI: 10.1002/Anie.201309867  0.787
2014 Creelman M, Kumauchi M, Hoff WD, Mathies RA. Chromophore dynamics in the PYP photocycle from femtosecond stimulated Raman spectroscopy. The Journal of Physical Chemistry. B. 118: 659-67. PMID 24451027 DOI: 10.1021/Jp408584V  0.303
2014 Geng T, Novak R, Mathies RA. Single-cell forensic short tandem repeat typing within microfluidic droplets. Analytical Chemistry. 86: 703-12. PMID 24266330 DOI: 10.1021/ac403137h  0.482
2014 Polli D, Weingart O, Brida D, Poli E, Maiuri M, Spillane KM, Bottoni A, Kukura P, Mathies RA, Cerullo G, Garavelli M. Aufspaltung des Wellenpakets und Doppelpfad-Desaktivierung im photoangeregten Sehpigment Isorhodopsin Angewandte Chemie. 126: 2537-2541. DOI: 10.1002/Ange.201309867  0.766
2014 Kim J, Stockton A, Willis P, Lillis R, Amundson R, Beegle L, Butterworth A, Curtis D, Ehrenfreund P, Grunthaner F, Hazen R, Kaiser R, Ludlam M, Mora M, Scherer J, ... ... Mathies RA, et al. The Mars organic analyzer: Instrumentation and methods for detecting trace organic molecules in our solar system 18th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2014. 33-35.  0.637
2013 Hoffman DP, Ellis SR, Mathies RA. Low frequency resonant impulsive Raman modes reveal inversion mechanism for azobenzene. The Journal of Physical Chemistry. A. 117: 11472-8. PMID 24138073 DOI: 10.1021/Jp408470A  0.637
2013 Hoffman DP, Valley D, Ellis SR, Creelman M, Mathies RA. Optimally shaped narrowband picosecond pulses for femtosecond stimulated Raman spectroscopy. Optics Express. 21: 21685-92. PMID 24104042 DOI: 10.1364/Oe.21.021685  0.601
2013 Shuga J, Zeng Y, Novak R, Lan Q, Tang X, Rothman N, Vermeulen R, Li L, Hubbard A, Zhang L, Mathies RA, Smith MT. Single molecule quantitation and sequencing of rare translocations using microfluidic nested digital PCR. Nucleic Acids Research. 41: e159. PMID 23873959 DOI: 10.1093/Nar/Gkt613  0.612
2013 Kim J, Jensen EC, Stockton AM, Mathies RA. Universal microfluidic automaton for autonomous sample processing: application to the Mars Organic Analyzer. Analytical Chemistry. 85: 7682-8. PMID 23675832 DOI: 10.1021/Ac303767M  0.768
2013 Novak R, Ranu N, Mathies RA. Rapid fabrication of nickel molds for prototyping embossed plastic microfluidic devices. Lab On a Chip. 13: 1468-71. PMID 23450308 DOI: 10.1039/C3Lc41362D  0.51
2013 Jensen EC, Stockton AM, Chiesl TN, Kim J, Bera A, Mathies RA. Digitally programmable microfluidic automaton for multiscale combinatorial mixing and sample processing. Lab On a Chip. 13: 288-96. PMID 23172232 DOI: 10.1039/C2Lc40861A  0.759
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers. DOI: 10.1109/CLEOE-IQEC.2013.6801979  0.766
2013 Kaiser RI, Stockton AM, Kim YS, Jensen EC, Mathies RA. On the formation of dipeptides in interstellar model ices Astrophysical Journal. 765. DOI: 10.1088/0004-637X/765/2/111  0.748
2013 De Re E, Schlau-Cohen GS, Huxter VM, Leverenz RL, Mathies RA, Fleming GR. Comparing the photophysics of the two forms of the Orange Carotenoid Protein using 2D electronic spectroscopy Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134108008  0.367
2013 Hoffman DP, Lee OP, Millstone JE, Chen MS, Su TA, Creelman M, Fréchet JMJ, Mathies RA. Electron transfer dynamics of triphenylamine dyes bound to TiO2 nanoparticles from femtosecond stimulated Raman spectroscopy Journal of Physical Chemistry C. 117: 6990-6997. DOI: 10.1021/Jp400369B  0.64
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers 0.766
2013 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Weingart O, Mathies RA, Cerullo G. Conical intersection dynamics in rhodopsin and its analog isorhodopsin Optics Infobase Conference Papers 0.766
2012 Twite AA, Hsiao SC, Onoe H, Mathies RA, Francis MB. Direct attachment of microbial organisms to material surfaces through sequence-specific DNA hybridization. Advanced Materials (Deerfield Beach, Fla.). 24: 2380-5. PMID 22431245 DOI: 10.1002/Adma.201104336  0.774
2012 Hoffman DP, Mathies RA. Photoexcited structural dynamics of an azobenzene analog 4-nitro-4'-dimethylamino-azobenzene from femtosecond stimulated Raman. Physical Chemistry Chemical Physics : Pccp. 14: 6298-306. PMID 22370582 DOI: 10.1039/C2Cp23468H  0.649
2012 Spillane KM, Dasgupta J, Mathies RA. Conformational homogeneity and excited-state isomerization dynamics of the bilin chromophore in phytochrome Cph1 from resonance Raman intensities. Biophysical Journal. 102: 709-17. PMID 22325295 DOI: 10.1016/J.Bpj.2011.11.4019  0.796
2012 Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD. Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 1702-7. PMID 22307634 DOI: 10.1073/Pnas.1112905109  0.552
2012 Kim J, Kang M, Jensen EC, Mathies RA. Lifting gate polydimethylsiloxane microvalves and pumps for microfluidic control. Analytical Chemistry. 84: 2067-71. PMID 22257104 DOI: 10.1021/ac202934x  0.531
2012 Bromberg A, Jensen EC, Kim J, Jung YK, Mathies RA. Microfabricated linear hydrogel microarray for single-nucleotide polymorphism detection. Analytical Chemistry. 84: 963-70. PMID 22145681 DOI: 10.1021/Ac202303F  0.599
2012 Frontiera RR, Fang C, Dasgupta J, Mathies RA. Probing structural evolution along multidimensional reaction coordinates with femtosecond stimulated Raman spectroscopy. Physical Chemistry Chemical Physics : Pccp. 14: 405-14. PMID 22120433 DOI: 10.1039/C1Cp22767J  0.791
2012 Dasgupta S, Shao C, Keane TE, Duberow DP, Mathies RA, Fisher PB, Kiemeney LA, Sidransky D. Detection of mitochondrial deoxyribonucleic acid alterations in urine from urothelial cell carcinoma patients. International Journal of Cancer. Journal International Du Cancer. 131: 158-64. PMID 21826645 DOI: 10.1002/Ijc.26357  0.757
2012 Twite AA, Hsiao SC, Onoe H, Mathies RA, Francis MB. DNA Hybridization: Direct Attachment of Microbial Organisms to Material Surfaces Through Sequence-Specific DNA Hybridization (Adv. Mater. 18/2012) Advanced Materials. 24: 2365-2365. DOI: 10.1002/Adma.201290104  0.77
2011 Kim J, Jensen EC, Megens M, Boser B, Mathies RA. Integrated microfluidic bioprocessor for solid phase capture immunoassays. Lab On a Chip. 11: 3106-12. PMID 21804972 DOI: 10.1039/C1Lc20407F  0.582
2011 Stockton AM, Tjin CC, Chiesl TN, Mathies RA. Analysis of carbonaceous biomarkers with the Mars Organic Analyzer microchip capillary electrophoresis system: carboxylic acids. Astrobiology. 11: 519-28. PMID 21790324 DOI: 10.1089/Ast.2011.0634  0.688
2011 Weinert EE, Phillips-Piro CM, Tran R, Mathies RA, Marletta MA. Controlling conformational flexibility of an O₂-binding H-NOX domain. Biochemistry. 50: 6832-40. PMID 21721586 DOI: 10.1021/Bi200788X  0.562
2011 Tran R, Weinert EE, Boon EM, Mathies RA, Marletta MA. Determinants of the heme-CO vibrational modes in the H-NOX family. Biochemistry. 50: 6519-30. PMID 21714509 DOI: 10.1021/Bi200551S  0.566
2011 Liu P, Li X, Greenspoon SA, Scherer JR, Mathies RA. Integrated DNA purification, PCR, sample cleanup, and capillary electrophoresis microchip for forensic human identification. Lab On a Chip. 11: 1041-8. PMID 21293830 DOI: 10.1039/C0Lc00533A  0.494
2011 Novak R, Zeng Y, Shuga J, Venugopalan G, Fletcher DA, Smith MT, Mathies RA. Single-cell multiplex gene detection and sequencing with microfluidically generated agarose emulsions. Angewandte Chemie (International Ed. in English). 50: 390-5. PMID 21132688 DOI: 10.1002/Anie.201006089  0.613
2011 Liu P, Scherer JR, Greenspoon SA, Chiesl TN, Mathies RA. Integrated sample cleanup and capillary array electrophoresis microchip for forensic short tandem repeat analysis. Forensic Science International. Genetics. 5: 484-92. PMID 21071298 DOI: 10.1016/J.Fsigen.2010.10.009  0.333
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers. DOI: 10.1109/CLEOE.2011.5943521  0.775
2011 Frontiera RR, Mathies RA. Femtosecond stimulated Raman spectroscopy Laser and Photonics Reviews. 5: 102-113. DOI: 10.1002/lpor.200900048  0.628
2011 Kim J, Jensen EC, Megens M, Boser B, Mathies RA. A microfluidic platform for automated microparticle label immunoassays 15th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2011, Microtas 2011. 2: 1002-1004.  0.514
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers 0.775
2011 Polli D, Brida D, Manzoni C, Spillane KM, Garavelli M, Kukura P, Mathies RA, Cerullo G. Conical intersection dynamics in a rhodopsin analog: 9-cis isorhodopsin Optics Infobase Conference Papers 0.775
2010 Jensen EC, Zeng Y, Kim J, Mathies RA. Microvalve Enabled Digital Microfluidic Systems for High Performance Biochemical and Genetic Analysis. Jala (Charlottesville, Va.). 15: 455-463. PMID 21218162 DOI: 10.1016/J.Jala.2010.08.003  0.651
2010 Scherer JR, Liu P, Mathies RA. Design and operation of a portable scanner for high performance microchip capillary array electrophoresis. The Review of Scientific Instruments. 81: 113105. PMID 21133459 DOI: 10.1063/1.3502457  0.337
2010 Thaitrong N, Liu P, Briese T, Lipkin WI, Chiesl TN, Higa Y, Mathies RA. Integrated capillary electrophoresis microsystem for multiplex analysis of human respiratory viruses. Analytical Chemistry. 82: 10102-9. PMID 21114282 DOI: 10.1021/Ac1020744  0.793
2010 Stockton AM, Tjin CC, Huang GL, Benhabib M, Chiesl TN, Mathies RA. Analysis of carbonaceous biomarkers with the Mars Organic Analyzer microchip capillary electrophoresis system: aldehydes and ketones. Electrophoresis. 31: 3642-9. PMID 20967779 DOI: 10.1002/Elps.201000424  0.685
2010 Shuga J, Zeng Y, Novak R, Mathies RA, Hainaut P, Smith MT. Selected technologies for measuring acquired genetic damage in humans. Environmental and Molecular Mutagenesis. 51: 851-70. PMID 20872848 DOI: 10.1002/Em.20630  0.594
2010 Polli D, Altoè P, Weingart O, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Kukura P, Mathies RA, Garavelli M, Cerullo G. Conical intersection dynamics of the primary photoisomerization event in vision. Nature. 467: 440-3. PMID 20864998 DOI: 10.1038/Nature09346  0.793
2010 Jensen EC, Bhat BP, Mathies RA. A digital microfluidic platform for the automation of quantitative biomolecular assays. Lab On a Chip. 10: 685-91. PMID 20221555 DOI: 10.1039/B920124F  0.577
2010 Zeng Y, Novak R, Shuga J, Smith MT, Mathies RA. High-performance single cell genetic analysis using microfluidic emulsion generator arrays. Analytical Chemistry. 82: 3183-90. PMID 20192178 DOI: 10.1021/Ac902683T  0.617
2010 Benhabib M, Chiesl TN, Stockton AM, Scherer JR, Mathies RA. Multichannel capillary electrophoresis microdevice and instrumentation for in situ planetary analysis of organic molecules and biomarkers. Analytical Chemistry. 82: 2372-9. PMID 20151682 DOI: 10.1021/Ac9025994  0.708
2010 Wu A, Wang L, Jensen E, Mathies R, Boser B. Modular integration of electronics and microfluidic systems using flexible printed circuit boards. Lab On a Chip. 10: 519-21. PMID 20126694 DOI: 10.1039/B922830F  0.579
2010 van der Steen R, Biesheuvel PL, Lugtenburg J, Erkelens C, Mathies RA. 8,16- And 8,18-methanobacteriorhodopsin. Synthesis and spectroscopy of 8,16- and 8,18-methanoretinal and their interaction with bacterioopsin Recueil Des Travaux Chimiques Des Pays-Bas. 108: 83-93. DOI: 10.1002/Recl.19891080302  0.302
2010 CHEREPY NJ, SHREVE AP, MOORE LJ, BOXER SG, MATHIES RA. ChemInform Abstract: Electronic and Nuclear Dynamics of the Accessory Bacteriochlorophylls in Bacterial Photosynthetic Reaction Centers from Resonance Raman Intensities. Cheminform. 28: no-no. DOI: 10.1002/chin.199728147  0.58
2010 REID PJ, LAWLESS MK, WICKHAM SD, MATHIES RA. ChemInform Abstract: Determination of Pericyclic Photochemical Reaction Dynamics with Resonance Raman Spectroscopy Cheminform. 25: no-no. DOI: 10.1002/chin.199441053  0.542
2010 REID PJ, DOIG SJ, WICKHAM SD, MATHIES RA. ChemInform Abstract: Photochemical Ring-Opening Reactions Are Complete in Picoseconds: A Time-Resolved UV Resonance Raman Study of 1,3-Cyclohexadiene. Cheminform. 24: no-no. DOI: 10.1002/chin.199341113  0.532
2010 REID PJ, WICKHAM SD, MATHIES RA. ChemInform Abstract: Picosecond UV Resonance Raman Spectroscopy of the Photochemical Hydrogen Migration in 1,3,5-Cycloheptatriene Cheminform. 23: no-no. DOI: 10.1002/chin.199240039  0.53
2010 REID PJ, DOIG SJ, MATHIES RA. ChemInform Abstract: Picosecond Time-Resolved UV Resonance Raman Spectroscopy of the Photochemical Ring Opening of 1,3,5-Cyclooctatriene and α- Phellandrene. Cheminform. 22: no-no. DOI: 10.1002/chin.199108107  0.527
2010 Novak R, Zeng Y, Shuga J, Venugopalan G, Fletcher D, Zhang L, Smith MT, Mathies RA. Microdroplet emulsion generator arrays for high-throughput single cell genetic variation analysis 14th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2010, Microtas 2010. 3: 1649-1651.  0.444
2010 Fang C, Frontiera RR, Tran R, Mathies RA. Mapping GFP structural evolution during excited-state proton transfer with femtosecond stimulated Raman Optics Infobase Conference Papers 0.767
2010 Frontiera RR, Creelman M, Dasgupta J, Smeigh AL, McCusker JK, Mathies RA. Femtosecond Raman structural studies of interfacial electron transfer in Grätzel cell sensitizers Acs National Meeting Book of Abstracts 0.623
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 0.772
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 0.772
2010 Polli D, Altoè P, Weingart O, Kukura P, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Mathies RA, Garavelli M, Cerullo G. Direct observation of the conical intersection in cis-trans photoisomerization of rhodopsin Optics Infobase Conference Papers 0.772
2009 Stockton AM, Chiesl TN, Lowenstein TK, Amashukeli X, Grunthaner F, Mathies RA. Capillary electrophoresis analysis of organic amines and amino acids in saline and acidic samples using the Mars organic analyzer. Astrobiology. 9: 823-31. PMID 19968460 DOI: 10.1089/Ast.2009.0357  0.674
2009 Fang C, Frontiera RR, Tran R, Mathies RA. Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy. Nature. 462: 200-4. PMID 19907490 DOI: 10.1038/Nature08527  0.803
2009 Frontiera RR, Dasgupta J, Mathies RA. Probing interfacial electron transfer in coumarin 343 sensitized TiO2 nanoparticles with femtosecond stimulated Raman. Journal of the American Chemical Society. 131: 15630-2. PMID 19860478 DOI: 10.1021/Ja907188B  0.799
2009 Spillane KM, Dasgupta J, Lagarias JC, Mathies RA. Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis. Journal of the American Chemical Society. 131: 13946-8. PMID 19739629 DOI: 10.1021/Ja905822M  0.786
2009 Liu P, Mathies RA. Integrated microfluidic systems for high-performance genetic analysis. Trends in Biotechnology. 27: 572-81. PMID 19709772 DOI: 10.1016/J.Tibtech.2009.07.002  0.311
2009 Tran R, Boon EM, Marletta MA, Mathies RA. Resonance Raman spectra of an O2-binding H-NOX domain reveal heme relaxation upon mutation. Biochemistry. 48: 8568-77. PMID 19653642 DOI: 10.1016/J.Bpj.2009.12.3517  0.59
2009 Shim S, Dasgupta J, Mathies RA. Femtosecond time-resolved stimulated Raman reveals the birth of bacteriorhodopsin's J and K intermediates. Journal of the American Chemical Society. 131: 7592-7. PMID 19441850 DOI: 10.1021/Ja809137X  0.723
2009 Beyor N, Yi L, Seo TS, Mathies RA. Integrated capture, concentration, polymerase chain reaction, and capillary electrophoretic analysis of pathogens on a chip. Analytical Chemistry. 81: 3523-8. PMID 19341275 DOI: 10.1021/Ac900060R  0.713
2009 Chiesl TN, Chu WK, Stockton AM, Amashukeli X, Grunthaner F, Mathies RA. Enhanced amine and amino acid analysis using Pacific Blue and the Mars Organic Analyzer microchip capillary electrophoresis system. Analytical Chemistry. 81: 2537-44. PMID 19245228 DOI: 10.1021/Ac8023334  0.679
2009 Dasgupta J, Frontiera RR, Taylor KC, Lagarias JC, Mathies RA. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 106: 1784-9. PMID 19179399 DOI: 10.1073/Pnas.0812056106  0.786
2009 Thaitrong N, Toriello NM, Del Bueno N, Mathies RA. Polymerase chain reaction-capillary electrophoresis genetic analysis microdevice with in-line affinity capture sample injection. Analytical Chemistry. 81: 1371-7. PMID 19140739 DOI: 10.1021/Ac802057F  0.79
2009 Stockton AM, Chiesl TN, Scherer JR, Mathies RA. Polycyclic aromatic hydrocarbon analysis with the Mars organic analyzer microchip capillary electrophoresis system. Analytical Chemistry. 81: 790-6. PMID 19072718 DOI: 10.1021/Ac802033U  0.684
2009 Yeung SH, Liu P, Del Bueno N, Greenspoon SA, Mathies RA. Integrated sample cleanup-capillary electrophoresis microchip for high-performance short tandem repeat genetic analysis. Analytical Chemistry. 81: 210-7. PMID 19061366 DOI: 10.1021/Ac8018685  0.317
2008 Liu P, Yeung SH, Crenshaw KA, Crouse CA, Scherer JR, Mathies RA. Real-time forensic DNA analysis at a crime scene using a portable microchip analyzer. Forensic Science International. Genetics. 2: 301-9. PMID 19083840 DOI: 10.1016/J.Fsigen.2008.03.009  0.309
2008 Toriello NM, Douglas ES, Thaitrong N, Hsiao SC, Francis MB, Bertozzi CR, Mathies RA. Integrated microfluidic bioprocessor for single-cell gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America. 105: 20173-8. PMID 19075237 DOI: 10.1073/Pnas.0806355106  0.775
2008 Frontiera RR, Shim S, Mathies RA. Origin of negative and dispersive features in anti-Stokes and resonance femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 129: 064507. PMID 18715085 DOI: 10.1063/1.2966361  0.676
2008 Aubrey AD, Chalmers JH, Bada JL, Grunthaner FJ, Amashukeli X, Willis P, Skelley AM, Mathies RA, Quinn RC, Zent AP, Ehrenfreund P, Amundson R, Glavin DP, Botta O, Barron L, et al. The Urey instrument: an advanced in situ organic and oxidant detector for Mars exploration. Astrobiology. 8: 583-95. PMID 18680409 DOI: 10.1089/Ast.2007.0169  0.704
2008 Beyor N, Seo TS, Liu P, Mathies RA. Immunomagnetic bead-based cell concentration microdevice for dilute pathogen detection. Biomedical Microdevices. 10: 909-17. PMID 18677651 DOI: 10.1007/S10544-008-9206-3  0.711
2008 Yeung SH, Seo TS, Crouse CA, Greenspoon SA, Chiesl TN, Ban JD, Mathies RA. Fluorescence energy transfer-labeled primers for high-performance forensic DNA profiling. Electrophoresis. 29: 2251-9. PMID 18435498 DOI: 10.1002/Elps.200700772  0.715
2008 Kumaresan P, Yang CJ, Cronier SA, Blazej RG, Mathies RA. High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets. Analytical Chemistry. 80: 3522-9. PMID 18410131 DOI: 10.1021/Ac800327D  0.789
2008 Shim S, Mathies RA. Development of a tunable femtosecond stimulated raman apparatus and its application to beta-carotene. The Journal of Physical Chemistry. B. 112: 4826-32. PMID 18363396 DOI: 10.1021/Jp710518Y  0.354
2008 Shim S, Stuart CM, Mathies RA. Resonance Raman cross-sections and vibronic analysis of rhodamine 6G from broadband stimulated Raman spectroscopy. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 9: 697-9. PMID 18330856 DOI: 10.1002/Cphc.200700856  0.732
2008 Shim S, Mathies RA. Femtosecond Raman-induced Kerr effect spectroscopy Journal of Raman Spectroscopy. 39: 1526-1530. DOI: 10.1002/Jrs.2109  0.35
2008 Zeng Y, Kumaresan P, Toriello NM, Douglas ES, Yang CJ, Blazej RG, Cronier SA, Thaitrong N, Hsaio SCH, Francis MB, Bertozzi CR, Mathies RA. Microfluidic technologies for single cell genetic and expression analysis 12th International Conference On Miniaturized Systems For Chemistry and Life Sciences - the Proceedings of Microtas 2008 Conference. 555-557.  0.759
2007 Stuart CM, Frontiera RR, Mathies RA. Excited-state structure and dynamics of cis- and trans-Azobenzene from resonance Raman intensity analysis. The Journal of Physical Chemistry. A. 111: 12072-80. PMID 17985852 DOI: 10.1021/Jp0751460  0.806
2007 Toriello NM, Liu CN, Blazej RG, Thaitrong N, Mathies RA. Integrated affinity capture, purification, and capillary electrophoresis microdevice for quantitative double-stranded DNA analysis. Analytical Chemistry. 79: 8549-56. PMID 17929900 DOI: 10.1021/Ac0712547  0.794
2007 Frontiera RR, Mathies RA. Polarization dependence of vibrational coupling signals in femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 127: 124501. PMID 17902915 DOI: 10.1063/1.2780843  0.672
2007 Jayarajah CN, Skelley AM, Fortner AD, Mathies RA. Analysis of neuroactive amines in fermented beverages using a portable microchip capillary electrophoresis system. Analytical Chemistry. 79: 8162-9. PMID 17892274 DOI: 10.1021/Ac071306S  0.716
2007 Chan EM, Marcus MA, Fakra S, ElNaggar M, Mathies RA, Alivisatos AP. Millisecond kinetics of nanocrystal cation exchange using microfluidic X-ray absorption spectroscopy. The Journal of Physical Chemistry. A. 111: 12210-5. PMID 17887656 DOI: 10.1021/Jp073474U  0.744
2007 Emrich CA, Medintz IL, Chu WK, Mathies RA. Microfabricated two-dimensional electrophoresis device for differential protein expression profiling. Analytical Chemistry. 79: 7360-6. PMID 17822308 DOI: 10.1021/Ac0711485  0.775
2007 Stuart CM, Tauber MJ, Mathies RA. Structure and dynamics of the solvated electron in alcohols from resonance Raman spectroscopy. The Journal of Physical Chemistry. A. 111: 8390-400. PMID 17676822 DOI: 10.1021/Jp068283Q  0.791
2007 Blazej RG, Kumaresan P, Cronier SA, Mathies RA. Inline injection microdevice for attomole-scale sanger DNA sequencing. Analytical Chemistry. 79: 4499-506. PMID 17497827 DOI: 10.1021/Ac070126F  0.783
2007 Adesokan AA, Pan D, Fredj E, Mathies RA, Gerber RB. Anharmonic vibrational calculations modeling the raman spectra of intermediates in the photoactive yellow protein (PYP) photocycle. Journal of the American Chemical Society. 129: 4584-94. PMID 17378558 DOI: 10.1021/Ja066903V  0.33
2007 Liu P, Seo TS, Beyor N, Shin KJ, Scherer JR, Mathies RA. Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing. Analytical Chemistry. 79: 1881-9. PMID 17269794 DOI: 10.1021/Ac061961K  0.729
2007 Kukura P, McCamant DW, Mathies RA. Femtosecond stimulated Raman spectroscopy. Annual Review of Physical Chemistry. 58: 461-88. PMID 17105414 DOI: 10.1002/Lpor.200900048  0.796
2007 Yoon S, Mathies RA. Femtosecond Stimulated Raman Study of Energy Transfer in Allophycocyanin Bulletin of the Korean Chemical Society. 28: 1639-1640. DOI: 10.5012/Bkcs.2007.28.10.1639  0.359
2007 Jensen EC, Grover WH, Mathies RA. Micropneumatic digital logic structures for integrated microdevice computation and control Journal of Microelectromechanical Systems. 16: 1378-1385. DOI: 10.1109/Jmems.2007.906080  0.741
2007 Skelley AM, Aubrey AD, Willis PA, Amashukeli X, Ehrenfreund P, Bada JL, Grunthaner FJ, Mathies RA. Organic amine biomarker detection in the Yungay region of the Atacama Desert with the Urey instrument Journal of Geophysical Research: Biogeosciences. 112. DOI: 10.1029/2006Jg000329  0.712
2006 Skelley AM, Cleaves HJ, Jayarajah CN, Bada JL, Mathies RA. Application of the Mars Organic Analyzer to nucleobase and amine biomarker detection. Astrobiology. 6: 824-37. PMID 17155883 DOI: 10.1089/Ast.2006.6.824  0.729
2006 Toriello NM, Liu CN, Mathies RA. Multichannel reverse transcription-polymerase chain reaction microdevice for rapid gene expression and biomarker analysis. Analytical Chemistry. 78: 7997-8003. PMID 17134132 DOI: 10.1021/Ac061058K  0.536
2006 Paegel BM, Grover WH, Skelley AM, Mathies RA, Joyce GF. Microfluidic serial dilution circuit. Analytical Chemistry. 78: 7522-7. PMID 17073422 DOI: 10.1021/Ac0608265  0.773
2006 Kukura P, Yoon S, Mathies RA. Femtosecond stimulated Raman spectroscopy. Analytical Chemistry. 78: 5953-9. PMID 16995280 DOI: 10.1021/Ac069450L  0.719
2006 Skelley AM, Mathies RA. Rapid on-column analysis of glucosamine and its mutarotation by microchip capillary electrophoresis. Journal of Chromatography. A. 1132: 304-9. PMID 16919655 DOI: 10.1016/J.Chroma.2006.07.082  0.708
2006 Yeung SH, Greenspoon SA, McGuckian A, Crouse CA, Emrich CA, Ban J, Mathies RA. Rapid and high-throughput forensic short tandem repeat typing using a 96-lane microfabricated capillary array electrophoresis microdevice. Journal of Forensic Sciences. 51: 740-7. PMID 16882214 DOI: 10.1111/J.1556-4029.2006.00153.X  0.777
2006 Liu CN, Toriello NM, Mathies RA. Multichannel PCR-CE microdevice for genetic analysis. Analytical Chemistry. 78: 5474-9. PMID 16878885 DOI: 10.1021/Ac060335K  0.552
2006 Kukura P, Frontiera R, Mathies RA. Direct observation of anharmonic coupling in the time domain with femtosecond stimulated Raman scattering. Physical Review Letters. 96: 238303. PMID 16803414 DOI: 10.1103/Physrevlett.96.238303  0.795
2006 Boon EM, Davis JH, Tran R, Karow DS, Huang SH, Pan D, Miazgowicz MM, Mathies RA, Marletta MA. Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase beta1 H-NOX domain. The Journal of Biological Chemistry. 281: 21892-902. PMID 16728401 DOI: 10.1074/Jbc.M600557200  0.537
2006 Grover WH, Ivester RH, Jensen EC, Mathies RA. Development and multiplexed control of latching pneumatic valves using microfluidic logical structures. Lab On a Chip. 6: 623-31. PMID 16652177 DOI: 10.1039/B518362F  0.74
2006 Blazej RG, Kumaresan P, Mathies RA. Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 103: 7240-5. PMID 16648246 DOI: 10.1073/Pnas.0602476103  0.578
2006 Aubrey A, Cleaves HJ, Chalmers JH, Skelley AM, Mathies RA, Grunthaner FJ, Ehrenfreund P, Bada JL. Sulfate minerals and organic compounds on Mars Geology. 34: 357-360. DOI: 10.1130/G22316.1  0.701
2006 Yoon S, Kukura P, Stuart CM, Mathies RA. Direct observation of the ultrafast intersystem crossing in tris(2,2′-bipyridine)ruthenium(II) using femtosecond stimulated Raman spectroscopy Molecular Physics. 104: 1275-1282. DOI: 10.1080/00268970500525846  0.794
2006 Frontiera RR, Kukura P, Mathies RA. Observation of anharmonic coupling in the time domain with femtosecond stimulated Raman Optics Infobase Conference Papers 0.772
2006 Grover WH, Jensen EC, Ivester RHC, Mathies RA. Programmable pneumatic logical circuits for microfluidic device control Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 506-508.  0.716
2006 Blazej RG, Kumaresan P, Mathies RA. Microfabricated bioprocessor for nanoliter-scale Sanger DNA sequencing Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1567-1569.  0.505
2006 Toriello NM, Liu CN, Mathies RA. Multichannel reverse transcription-PCR microdevice for rapid multiplex gene expression analysis Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1453-1455.  0.447
2005 McCamant DW, Kukura P, Mathies RA. Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. The Journal of Physical Chemistry. B. 109: 10449-57. PMID 16852266 DOI: 10.1021/Jp050095X  0.797
2005 Derbyshire ER, Tran R, Mathies RA, Marletta MA. Characterization of nitrosoalkane binding and activation of soluble guanylate cyclase. Biochemistry. 44: 16257-65. PMID 16331986 DOI: 10.1021/Bi0515671  0.572
2005 Kukura P, McCamant DW, Yoon S, Wandschneider DB, Mathies RA. Structural observation of the primary isomerization in vision with femtosecond-stimulated Raman. Science (New York, N.Y.). 310: 1006-9. PMID 16284176 DOI: 10.1126/Science.1118379  0.801
2005 Grover WH, Mathies RA. An integrated microfluidic processor for single nucleotide polymorphism-based DNA computing. Lab On a Chip. 5: 1033-40. PMID 16175257 DOI: 10.1039/B505840F  0.68
2005 Kamei T, Toriello NM, Lagally ET, Blazej RG, Scherer JR, Street RA, Mathies RA. Microfluidic genetic analysis with an integrated a-Si:H detector. Biomedical Microdevices. 7: 147-52. PMID 15940430 DOI: 10.1007/S10544-005-1595-Y  0.305
2005 Tian H, Emrich CA, Scherer JR, Mathies RA, Andersen PS, Larsen LA, Christiansen M. High-throughput single-strand conformation polymorphism analysis on a microfabricated capillary array electrophoresis device. Electrophoresis. 26: 1834-42. PMID 15706574 DOI: 10.1002/Elps.200410205  0.782
2005 Skelley AM, Scherer JR, Aubrey AD, Grover WH, Ivester RH, Ehrenfreund P, Grunthaner FJ, Bada JL, Mathies RA. Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars. Proceedings of the National Academy of Sciences of the United States of America. 102: 1041-6. PMID 15657130 DOI: 10.1073/Pnas.0406798102  0.78
2005 Yoon S, McCamant DW, Kukura P, Mathies RA, Zhang D, Lee SY. Dependence of line shapes in femtosecond broadband stimulated Raman spectroscopy on pump-probe time delay. The Journal of Chemical Physics. 122: 024505. PMID 15638596 DOI: 10.1063/1.1828044  0.781
2005 Bada JL, Sephton MA, Ehrenfreund P, Mathies RA, Skelley AM, Grunthaner FJ, Zent AP, Quinn RC, Josset JL, Robert F, Botta O, Glavin DP. New strategies to detect life on Mars Astronomy and Geophysics. 46: 6.26-6.27. DOI: 10.1111/J.1468-4004.2005.46626.X  0.696
2004 McCamant DW, Kukura P, Yoon S, Mathies RA. Femtosecond broadband stimulated Raman spectroscopy: Apparatus and methods. The Review of Scientific Instruments. 75: 4971-80. PMID 17183413 DOI: 10.1063/1.1807566  0.807
2004 Kukura P, McCamant DW, Mathies RA. Femtosecond Time-Resolved Stimulated Raman Spectroscopy of the S(2) (1B(u)) Excited State of beta-Carotene. The Journal of Physical Chemistry. A. 108: 5921-5. PMID 16633549 DOI: 10.1021/Jp0482971  0.792
2004 Doherty EA, Kan CW, Paegel BM, Yeung SH, Cao S, Mathies RA, Barron AE. Sparsely cross-linked "nanogel" matrixes as fluid, mechanically stabilized polymer networks for high-throughput microchannel DNA sequencing. Analytical Chemistry. 76: 5249-56. PMID 15362880 DOI: 10.1021/Ac049721X  0.675
2004 Yan ECY, Ganim Z, Kazmi MA, Chang BSW, Sakmar TP, Mathies RA. Resonance raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct Biochemistry. 43: 10867-10876. PMID 15323547 DOI: 10.1021/Bi0400148  0.548
2004 Lee SY, Zhang D, McCamant DW, Kukura P, Mathies RA. Theory of femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 121: 3632-42. PMID 15303930 DOI: 10.1063/1.1777214  0.803
2004 Karow DS, Pan D, Tran R, Pellicena P, Presley A, Mathies RA, Marletta MA. Spectroscopic characterization of the soluble guanylate cyclase-like heme domains from Vibrio cholerae and Thermoanaerobacter tengcongensis. Biochemistry. 43: 10203-11. PMID 15287748 DOI: 10.1021/Bi049374L  0.536
2004 Ertl P, Emrich CA, Singhal P, Mathies RA. Capillary electrophoresis chips with a sheath-flow supported electrochemical detection system. Analytical Chemistry. 76: 3749-55. PMID 15228350 DOI: 10.1021/Ac035282A  0.778
2004 Lagally ET, Scherer JR, Blazej RG, Toriello NM, Diep BA, Ramchandani M, Sensabaugh GF, Riley LW, Mathies RA. Integrated portable genetic analysis microsystem for pathogen/infectious disease detection. Analytical Chemistry. 76: 3162-70. PMID 15167797 DOI: 10.1021/Ac035310P  0.325
2004 Pan D, Philip A, Hoff WD, Mathies RA. Time-resolved resonance raman structural studies of the pB' intermediate in the photocycle of photoactive yellow protein. Biophysical Journal. 86: 2374-82. PMID 15041675 DOI: 10.1016/S0006-3495(04)74294-0  0.309
2004 Tauber MJ, Stuart CM, Mathies RA. Resonance Raman spectra of electrons solvated in liquid alcohols. Journal of the American Chemical Society. 126: 3414-5. PMID 15025455 DOI: 10.1021/Ja031816D  0.785
2004 Kamei T, Paegel BM, Scherer JR, Skelley AM, Street RA, Mathies RA. Fusion of a-Si:H sensor technology with microfluidic bioanalytical devices Journal of Non-Crystalline Solids. 338: 715-719. DOI: 10.1016/J.Jnoncrysol.2004.03.117  0.781
2004 Skelley AM, Scherer JR, Aubrey AD, Ivester RHC, Ehrenfreund P, Grunthaner FJ, Bada JL, Mathies RA. Sensitive amino acid composition and chirality analysis with the Mars Organic Analyzer (MOA) International Astronautical Federation - 55th International Astronautical Congress 2004. 3: 1564-1568.  0.682
2003 McCamant DW, Kukura P, Mathies RA. Femtosecond Time-Resolved Stimulated Raman Spectroscopy: Application to the Ultrafast Internal Conversion in beta-Carotene. The Journal of Physical Chemistry. A. 107: 8208-14. PMID 16710440 DOI: 10.1021/Jp030147N  0.806
2003 Skelley AM, Mathies RA. Chiral separation of fluorescamine-labeled amino acids using microfabricated capillary electrophoresis devices for extraterrestrial exploration. Journal of Chromatography. A. 1021: 191-9. PMID 14735988 DOI: 10.1016/J.Chroma.2003.08.096  0.718
2003 Kamei T, Paegel BM, Scherer JR, Skelley AM, Street RA, Mathies RA. Integrated hydrogenated amorphous Si photodiode detector for microfluidic bioanalytical devices. Analytical Chemistry. 75: 5300-5. PMID 14710806 DOI: 10.1021/Ac0301550  0.788
2003 McCamant DW, Kukura P, Mathies RA. Femtosecond broadband stimulated Raman: a new approach for high-performance vibrational spectroscopy. Applied Spectroscopy. 57: 1317-23. PMID 14658143 DOI: 10.1366/000370203322554455  0.804
2003 Yan ECY, Kazmi MA, Ganim Z, Hou JM, Pan D, Chang BSW, Sakmar TP, Mathies RA. Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin Proceedings of the National Academy of Sciences of the United States of America. 100: 9262-9267. PMID 12835420 DOI: 10.1073/Pnas.1531970100  0.547
2003 Kim JE, Pan D, Mathies RA. Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy. Biochemistry. 42: 5169-75. PMID 12731857 DOI: 10.1021/Bi030026D  0.539
2003 Kim JE, Tauber MJ, Mathies RA. Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin. Biophysical Journal. 84: 2492-501. PMID 12668457 DOI: 10.1016/S0006-3495(03)75054-1  0.671
2003 Blazej RG, Paegel BM, Mathies RA. Polymorphism ratio sequencing: a new approach for single nucleotide polymorphism discovery and genotyping. Genome Research. 13: 287-93. PMID 12566407 DOI: 10.1101/Gr.396203  0.694
2003 Paegel BM, Blazej RG, Mathies RA. Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis. Current Opinion in Biotechnology. 14: 42-50. PMID 12566001 DOI: 10.1016/S0958-1669(02)00004-6  0.684
2003 Tauber MJ, Mathies RA. Structure of the aqueous solvated electron from resonance Raman spectroscopy: lessons from isotopic mixtures. Journal of the American Chemical Society. 125: 1394-402. PMID 12553843 DOI: 10.1021/Ja021134A  0.574
2003 Kamei T, Paegel BM, Lagally ET, Skelley AM, Scherer JR, Street RA, Mathies RA. Development of an integrated a-Si:H photodiode detector and its evaluation for chemical and biochemical microfluidic analysis The Japan Society of Applied Physics. DOI: 10.7567/Ssdm.2003.F-6-1  0.656
2003 Tauber MJ, Mathies RA, Chen X, Bradforth SE. Flowing liquid sample jet for resonance Raman and ultrafast optical spectroscopy Review of Scientific Instruments. 74: 4958-4960. DOI: 10.1063/1.1614874  0.562
2003 Grover WH, Skelley AM, Liu CN, Lagally ET, Mathies RA. Monolithic membrane valves and diaphragm pumps for practical large-scale integration into glass microfluidic devices Sensors and Actuators, B: Chemical. 89: 315-323. DOI: 10.1016/S0925-4005(02)00468-9  0.77
2003 Kukura P, McCamant DW, Davis PH, Mathies RA. Vibrational structure of the S2 (1Bu) excited state of diphenyloctatetraene observed by femtosecond stimulated Raman spectroscopy Chemical Physics Letters. 382: 81-86. DOI: 10.1016/J.Cplett.2003.10.051  0.804
2003 Blazej RG, Paegel BM, Emrich CA, Mathies RA. Microfabricated capillary array electrophoresis. Implementation and applications. Lab-On-a-Chip: Miniaturized Systems For (Bio) Chemical Analysis and Synthesis. 231-247. DOI: 10.1016/B978-044451100-3/50012-7  0.76
2003 Kamei T, Scherer JR, Paegel BM, Lagally ET, Skelley AM, Street RA, Mathies RA. Microfluidic Genetic and Amino Acid Analysis using an Integrated a-Si:H Detector Proceedings of Ieee Sensors. 2: 1049-1053.  0.765
2002 McCamant DW, Kim JE, Mathies RA. Vibrational Relaxation in beta-Carotene Probed by Picosecond Stokes and Anti-Stokes Resonance Raman Spectroscopy. The Journal of Physical Chemistry. A. 106: 6030-8. PMID 17235377 DOI: 10.1021/Jp0203595  0.727
2002 Kim JE, Mathies RA. Anti-stokes Raman study of vibrational cooling dynamics in the primary photochemistry of rhodopsin. The Journal of Physical Chemistry. A. 106: 8508-15. PMID 16552447 DOI: 10.1021/Jp021069R  0.546
2002 Paegel BM, Yeung SH, Mathies RA. Microchip bioprocessor for integrated nanovolume sample purification and DNA sequencing. Analytical Chemistry. 74: 5092-8. PMID 12380835 DOI: 10.1021/Ac0203645  0.69
2002 Emrich CA, Tian H, Medintz IL, Mathies RA. Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis. Analytical Chemistry. 74: 5076-83. PMID 12380833 DOI: 10.1021/Ac020236G  0.781
2002 Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA. Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate. Journal of the American Chemical Society. 124: 4857-64. PMID 11971736 DOI: 10.1021/Ja012666E  0.52
2002 Yan ECY, Kazmi MA, De S, Chang BSW, Seibert C, Marin EP, Mathies RA, Sakmar TP. Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II Biochemistry. 41: 3620-3627. PMID 11888278 DOI: 10.1021/Bi0160011  0.524
2002 Paegel BM, Emrich CA, Wedemayer GJ, Scherer JR, Mathies RA. High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor. Proceedings of the National Academy of Sciences of the United States of America. 99: 574-9. PMID 11792836 DOI: 10.1073/Pnas.012608699  0.79
2002 Skelley AM, Grunthaner FJ, Bada JL, Mathies RA. Mars organic detector III: A versatile instrument for detection of bio-organic signatures on mars Proceedings of Spie - the International Society For Optical Engineering. 4878: 59-67. DOI: 10.1117/12.520580  0.68
2002 Tauber MJ, Mathies RA. Resonance Raman spectra and vibronic analysis of the aqueous solvated electron Chemical Physics Letters. 354: 518-526. DOI: 10.1016/S0009-2614(02)00203-8  0.595
2001 Kim JE, McCamant DW, Zhu L, Mathies RA. Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds. The Journal of Physical Chemistry. B. 105: 1240-9. PMID 16755302 DOI: 10.1021/Jp001236S  0.744
2001 Lagally ET, Emrich CA, Mathies RA. Fully integrated PCR-capillary electrophoresis microsystem for DNA analysis. Lab On a Chip. 1: 102-7. PMID 15100868 DOI: 10.1039/B109031N  0.783
2001 Scherer JR, Paegel BM, Wedemayer GJ, Emrich CA, Lo J, Medintz IL, Mathies RA. High-pressure gel loader for capillary array electrophoresis microchannel plates. Biotechniques. 31: 1150-2, 1154. PMID 11730021 DOI: 10.2144/01315Rr04  0.772
2001 Kim JE, Tauber MJ, Mathies RA. Wavelength dependent cis-trans isomerization in vision. Biochemistry. 40: 13774-8. PMID 11705366 DOI: 10.1021/Bi0116137  0.66
2001 Medintz IL, Paegel BM, Blazej RG, Emrich CA, Berti L, Scherer JR, Mathies RA. High-performance genetic analysis using microfabricated capillary array electrophoresis microplates. Electrophoresis. 22: 3845-56. PMID 11700713 DOI: 10.1002/1522-2683(200110)22:18<3845::Aid-Elps3845>3.0.Co;2-0  0.793
2001 Medintz IL, Paegel BM, Mathies RA. Microfabricated capillary array electrophoresis DNA analysis systems. Journal of Chromatography. A. 924: 265-70. PMID 11521873 DOI: 10.1016/S0021-9673(01)00852-4  0.702
2001 Medintz IL, Berti L, Emrich CA, Tom J, Scherer JR, Mathies RA. Genotyping energy-transfer-cassette-labeled short-tandem-repeat amplicons with capillary array electrophoresis microchannel plates. Clinical Chemistry. 47: 1614-21. PMID 11514394 DOI: 10.1093/Clinchem/47.9.1614  0.79
2001 Berti L, Medintz IL, Tom J, Mathies RA. Energy-transfer cassette labeling for capillary array electrophoresis short tandem repeat DNA fragment sizing. Bioconjugate Chemistry. 12: 493-500. PMID 11459452 DOI: 10.1021/Bc000155W  0.309
2001 Pan D, Mathies RA. Chromophore structure in lumirhodopsin and metarhodopsin I by time-resolved resonance Raman microchip spectroscopy. Biochemistry. 40: 7929-36. PMID 11425321 DOI: 10.1021/Bi010670X  0.34
2001 Berti L, Xie J, Medintz IL, Glazer AN, Mathies RA. Energy transfer cassettes for facile labeling of sequencing and PCR primers. Analytical Biochemistry. 292: 188-97. PMID 11355850 DOI: 10.1006/Abio.2001.5069  0.548
2001 Medintz I, Wong WW, Berti L, Shiow L, Tom J, Scherer J, Sensabaugh G, Mathies RA. High-performance multiplex SNP analysis of three hemochromatosis-related mutations with capillary array electrophoresis microplates. Genome Research. 11: 413-21. PMID 11230165 DOI: 10.1101/Gr.164701  0.312
2001 Lagally ET, Medintz I, Mathies RA. Single-molecule DNA amplification and analysis in an integrated microfluidic device. Analytical Chemistry. 73: 565-70. PMID 11217764 DOI: 10.1021/Ac001026B  0.338
2001 Tauber MJ, Mathies RA. Fluorescence and resonance Raman spectra of the aqueous solvated electron Journal of Physical Chemistry A. 105: 10952-10960. DOI: 10.1021/Jp012184P  0.614
2000 Medintz IL, Lee CC, Wong WW, Pirkola K, Sidransky D, Mathies RA. Loss of heterozygosity assay for molecular detection of cancer using energy-transfer primers and capillary array electrophoresis. Genome Research. 10: 1211-8. PMID 10958639 DOI: 10.1101/Gr.10.8.1211  0.302
2000 Paegel BM, Hutt LD, Simpson PC, Mathies RA. Turn geometry for minimizing band broadening in microfabricated capillary electrophoresis channels. Analytical Chemistry. 72: 3030-7. PMID 10939363 DOI: 10.1021/Ac000054R  0.666
2000 Andel F, Murphy JT, Haas JA, McDowell MT, van der Hoef I, Lugtenburg J, Lagarias JC, Mathies RA. Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues. Biochemistry. 39: 2667-76. PMID 10704217 DOI: 10.1021/Bi991688Z  0.525
2000 Lagally ET, Simpson PC, Mathies RA. Monolithic integrated microfluidic DNA amplification and capillary electrophoresis analysis system Sensors and Actuators, B: Chemical. 63: 138-146. DOI: 10.1016/S0925-4005(00)00350-6  0.33
1999 Haab BB, Mathies RA. Single-molecule detection of DNA separations in microfabricated capillary electrophoresis chips employing focused molecular streams. Analytical Chemistry. 71: 5137-45. PMID 11419480 DOI: 10.1021/Ac990644T  0.626
1999 Mathies RA. Photons, femtoseconds and dipolar interactions: a molecular picture of the primary events in vision. Novartis Foundation Symposium. 224: 70-84; discussion 84. PMID 10614047 DOI: 10.1002/9780470515693.Ch6  0.355
1999 Shi Y, Simpson PC, Scherer JR, Wexler D, Skibola C, Smith MT, Mathies RA. Radial capillary array electrophoresis microplate and scanner for high-performance nucleic acid analysis. Analytical Chemistry. 71: 5354-61. PMID 10596215 DOI: 10.1021/Ac990518P  0.333
1999 Hutt LD, Glavin DP, Bada JL, Mathies RA. Microfabricated capillary electrophoresis amino acid chirality analyzer for extraterrestrial exploration Analytical Chemistry. 71: 4000-4006. PMID 10500487 DOI: 10.1021/Ac9903959  0.318
1999 Kochendoerfer GG, Lin SW, Sakmar TP, Mathies RA. How color visual pigments are tuned. Trends in Biochemical Sciences. 24: 300-5. PMID 10431173 DOI: 10.1016/S0968-0004(99)01432-2  0.54
1999 Scherer JR, Kheterpal I, Radhakrishnan A, Ja WW, Mathies RA. Ultra-high throughput rotary capillary array electrophoresis scanner for fluorescent DNA sequencing and analysis. Electrophoresis. 20: 1508-17. PMID 10424474 DOI: 10.1002/(Sici)1522-2683(19990601)20:7<1508::Aid-Elps1508>3.0.Co;2-7  0.341
1999 Kaminaka S, Mathies RA. Time-Resolved Ultraviolet Resonance Raman of Protein Structural Changes in The KI-Intermediate Of Bacteriorhodopsin Laser Chemistry. 19: 165-168. DOI: 10.1155/1999/93486  0.36
1999 Zhu L, Kim J, Mathies RA. Picosecond time-resolved Raman system for studying photochemical reaction dynamics: application to the primary events in vision Journal of Raman Spectroscopy. 30: 777-783. DOI: 10.1002/(Sici)1097-4555(199909)30:9<777::Aid-Jrs449>3.0.Co;2-C  0.529
1998 Lin SW, Kochendoerfer GG, Carroll KS, Wang D, Mathies RA, Sakmar TP. Mechanisms of spectral tuning in blue cone visual pigments. Visible and raman spectroscopy of blue-shifted rhodopsin mutants. The Journal of Biological Chemistry. 273: 24583-91. PMID 9733753 DOI: 10.1074/Jbc.273.38.24583  0.547
1998 Woolley AT, Lao K, Glazer AN, Mathies RA. Capillary electrophoresis chips with integrated electrochemical detection. Analytical Chemistry. 70: 684-8. PMID 9491753 DOI: 10.1021/Ac971135Z  0.679
1998 Simpson PC, Roach D, Woolley AT, Thorsen T, Johnston R, Sensabaugh GF, Mathies RA. High-throughput genetic analysis using microfabricated 96-sample capillary array electrophoresis microplates. Proceedings of the National Academy of Sciences of the United States of America. 95: 2256-61. PMID 9482872 DOI: 10.1073/Pnas.95.5.2256  0.593
1998 Hung SC, Mathies RA, Glazer AN. Comparison of fluorescence energy transfer primers with different donor-acceptor dye combinations. Analytical Biochemistry. 255: 32-8. PMID 9448839 DOI: 10.1006/Abio.1997.2451  0.551
1998 Kaminaka S, Mathies RA. High-Throughput Large-Aperture Prism Prefilter for Ultraviolet Resonance Raman Spectroscopy Applied Spectroscopy. 52: 469-473. DOI: 10.1366/0003702981943707  0.323
1998 Haab BB, Mathies RA. Single molecule DNA detection in microfabricated capillary electrophoresis chips Proceedings of Spie - the International Society For Optical Engineering. 3259: 104-111. DOI: 10.1117/12.307316  0.593
1998 Simpson PC, Woolley AT, Mathies RA. Biomedical Microdevices. 1: 7-26. DOI: 10.1023/A:1009922004301  0.561
1998 Lin SW, Groesbeek M, van der Hoef I, Verdegem P, Lugtenburg J, Mathies RA. Vibrational Assignment of Torsional Normal Modes of Rhodopsin:  Probing Excited-State Isomerization Dynamics along the Reactive C11C12Torsion Coordinate The Journal of Physical Chemistry B. 102: 2787-2806. DOI: 10.1021/Jp972752U  0.336
1997 Clark SM, Mathies RA. Multiplex dsDNA Fragment Sizing Using Dimeric Intercalation Dyes and Capillary Array Electrophoresis:  Ionic Effects on the Stability and Electrophoretic Mobility of DNA-Dye Complexes. Analytical Chemistry. 69: 1355-63. PMID 21639343 DOI: 10.1021/Ac960866G  0.316
1997 Kochendoerfer GG, Kaminaka S, Mathies RA. Ultraviolet resonance Raman examination of the light-induced protein structural changes in rhodopsin activation. Biochemistry. 36: 13153-9. PMID 9376376 DOI: 10.1021/Bi971541C  0.333
1997 Wang Y, Hung SC, Linn JF, Steiner G, Glazer AN, Sidransky D, Mathies RA. Microsatellite-based cancer detection using capillary array electrophoresis and energy-transfer fluorescent primers. Electrophoresis. 18: 1742-9. PMID 9372265 DOI: 10.1002/Elps.1150181007  0.546
1997 Zeng Z, Clark SM, Mathies RA, Glazer AN. Improved stability and electrophoretic properties of preformed fluorescent cationic dye-DNA complexes in a taps-tetrapentylammonium buffer in agarose slab gels. Analytical Biochemistry. 252: 110-4. PMID 9324948 DOI: 10.1006/Abio.1997.2303  0.553
1997 Hung SC, Mathies RA, Glazer AN. Optimization of spectroscopic and electrophoretic properties of energy transfer primers. Analytical Biochemistry. 252: 78-88. PMID 9324944 DOI: 10.1006/Abio.1997.2287  0.527
1997 Cherepy NJ, Shreve AP, Moore LJ, Boxer SG, Mathies RA. Temperature dependence of the Qy resonance Raman spectra of bacteriochlorophylls, the primary electron donor, and bacteriopheophytins in the bacterial photosynthetic reaction center. Biochemistry. 36: 8559-66. PMID 9214301 DOI: 10.1021/Bi970024R  0.628
1997 Kochendoerfer GG, Wang Z, Oprian DD, Mathies RA. Resonance Raman examination of the wavelength regulation mechanism in human visual pigments. Biochemistry. 36: 6577-87. PMID 9184137 DOI: 10.1021/Bi970322O  0.341
1997 Woolley AT, Sensabaugh GF, Mathies RA. High-speed DNA genotyping using microfabricated capillary array electrophoresis chips. Analytical Chemistry. 69: 2181-6. PMID 9183181 DOI: 10.1021/Ac961237+  0.598
1997 Glazer AN, Mathies RA. Energy-transfer fluorescent reagents for DNA analyses. Current Opinion in Biotechnology. 8: 94-102. PMID 9013654 DOI: 10.1016/S0958-1669(97)80163-2  0.564
1997 Haab BB, Mathies RA. Optimization of Single-Molecule Fluorescence Burst Detection of ds-DNA: Application to Capillary Electrophoresis Separations of 100–1000 Basepair Fragments Applied Spectroscopy. 51: 1579-1584. DOI: 10.1366/0003702971939136  0.625
1997 Cherepy NJ, Shreve AP, Moore LJ, Boxer SG, Mathies RA. Electronic and Nuclear Dynamics of the Accessory Bacteriochlorophylls in Bacterial Photosynthetic Reaction Centers from Resonance Raman Intensities The Journal of Physical Chemistry B. 101: 3250-3260. DOI: 10.1021/Jp963051K  0.628
1997 Andel F, Hasson KC, Gai F, Anfinrud PA, Mathies RA. Femtosecond time-resolved spectroscopy of the primary photochemistry of phytochrome Biospectroscopy. 3: 421-433. DOI: 10.1002/(Sici)1520-6343(1997)3:6<421::Aid-Bspy1>3.0.Co;2-3  0.338
1996 Kheterpal I, Scherer JR, Clark SM, Radhakrishnan A, Ju J, Ginther CL, Sensabaugh GF, Mathies RA. DNA sequencing using a four-color confocal fluorescence capillary array scanner. Electrophoresis. 17: 1852-9. PMID 9034766 DOI: 10.1002/Elps.1150171209  0.696
1996 Kochendoerfer GG, Verdegem PJ, van der Hoef I, Lugtenburg J, Mathies RA. Retinal analog study of the role of steric interactions in the excited state isomerization dynamics of rhodopsin. Biochemistry. 35: 16230-40. PMID 8973196 DOI: 10.1021/Bi961951L  0.323
1996 Andel F, Lagarias JC, Mathies RA. Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome. Biochemistry. 35: 15997-6008. PMID 8973170 DOI: 10.1021/Bi962175K  0.531
1996 Hung SC, Ju J, Mathies RA, Glazer AN. Cyanine dyes with high absorption cross section as donor chromophores in energy transfer primers. Analytical Biochemistry. 243: 15-27. PMID 8954521 DOI: 10.1006/Abio.1996.0477  0.754
1996 Woolley AT, Hadley D, Landre P, deMello AJ, Mathies RA, Northrup MA. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Analytical Chemistry. 68: 4081-6. PMID 8946790 DOI: 10.1021/Ac960718Q  0.54
1996 Wang Y, Wallin JM, Ju J, Sensabaugh GF, Mathies RA. High-resolution capillary array electrophoretic sizing of multiplexed short tandem repeat loci using energy-transfer fluorescent primers. Electrophoresis. 17: 1485-90. PMID 8905265 DOI: 10.1002/Elps.1150170913  0.703
1996 Hung SC, Ju J, Mathies RA, Glazer AN. Energy transfer primers with 5- or 6-carboxyrhodamine-6G as acceptor chromophores. Analytical Biochemistry. 238: 165-70. PMID 8660606 DOI: 10.1006/Abio.1996.0270  0.745
1996 Ju J, Glazer AN, Mathies RA. Cassette labeling for facile construction of energy transfer fluorescent primers. Nucleic Acids Research. 24: 1144-8. PMID 8604350 DOI: 10.1093/Nar/24.6.1144  0.758
1996 Ju J, Glazer AN, Mathies RA. Energy transfer primers: a new fluorescence labeling paradigm for DNA sequencing and analysis. Nature Medicine. 2: 246-9. PMID 8574973 DOI: 10.1038/Nm0296-246  0.744
1996 Hage W, Kim M, Frei H, Mathies RA. Protein Dynamics in the Bacteriorhodopsin Photocycle:  A Nanosecond Step-Scan FTIR Investigation of the KL to L Transition The Journal of Physical Chemistry. 100: 16026-16033. DOI: 10.1021/Jp9614198  0.302
1996 Kochendoerfer GG, Mathies RA. Spontaneous Emission Study of the Femtosecond Isomerization Dynamics of Rhodopsin The Journal of Physical Chemistry. 100: 14526-14532. DOI: 10.1021/Jp960509+  0.344
1996 Cherepy NJ, Du M, Holzwarth AR, Mathies RA. Near-Infrared Resonance Raman Spectra of Chlorosomes:  Probing Nuclear Coupling in Electronic Energy Transfer The Journal of Physical Chemistry. 100: 4662-4671. DOI: 10.1021/Jp952992E  0.34
1995 Haab BB, Mathies RA. Single molecule fluorescence burst detection of DNA fragments separated by capillary electrophoresis. Analytical Chemistry. 67: 3253-60. PMID 11407410 DOI: 10.1021/Ac00114A023  0.629
1995 Ju J, Kheterpal I, Scherer JR, Ruan C, Fuller CW, Glazer AN, Mathies RA. Design and synthesis of fluorescence energy transfer dye-labeled primers and their application for DNA sequencing and analysis. Analytical Biochemistry. 231: 131-40. PMID 8678292 DOI: 10.1006/Abio.1995.1512  0.566
1995 Woolley AT, Mathies RA. Ultra-high-speed DNA sequencing using capillary electrophoresis chips. Analytical Chemistry. 67: 3676-80. PMID 8644919 DOI: 10.1021/Ac00116A010  0.589
1995 Ju J, Ruan C, Fuller CW, Glazer AN, Mathies RA. Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis. Proceedings of the National Academy of Sciences of the United States of America. 92: 4347-51. PMID 7753809 DOI: 10.1073/Pnas.92.10.4347  0.755
1995 Cherepy NJ, Holzwarth AR, Mathies RA. Near-infrared resonance Raman spectra of Chloroflexus aurantiacus photosynthetic reaction centers. Biochemistry. 34: 5288-93. PMID 7711050 DOI: 10.1021/Bi00015A044  0.327
1995 Mathies RA, Li XY. On modeling the vibrational spectra of 14-s-cis retinal conformers in bacteriorhodopsin. Biophysical Chemistry. 56: 47-55. PMID 7662868 DOI: 10.1016/0301-4622(95)00014-O  0.331
1995 Kim M, Mathies RA, Hoff WD, Hellingwerf KJ. Resonance Raman evidence that the thioester-linked 4-hydroxycinnamyl chromophore of photoactive yellow protein is deprotonated. Biochemistry. 34: 12669-72. PMID 7548018 DOI: 10.1021/Bi00039A024  0.339
1995 Wang Y, Ju J, Carpenter BA, Atherton JM, Sensabaugh GF, Mathies RA. Rapid sizing of short tandem repeat alleles using capillary array electrophoresis and energy-transfer fluorescent primers. Analytical Chemistry. 67: 1197-203. PMID 7537476 DOI: 10.1021/Ac00103A010  0.702
1995 Shreve AP, Mathies RA. Thermal effects in resonance Raman scattering: Analysis of the Raman intensities of rhodopsin and of the time-resolved Raman scattering of bacteriorhodopsin Journal of Physical Chemistry. 99: 7285-7299. DOI: 10.1021/J100019A012  0.605
1994 Clark SM, Mathies RA. High-speed parallel separation of DNA restriction fragments using capillary array electrophoresis. Analytical Biochemistry. 215: 163-70. PMID 8122774 DOI: 10.1006/Abio.1993.1571  0.345
1994 Lin SW, Imamoto Y, Fukada Y, Shichida Y, Yoshizawa T, Mathies RA. What makes red visual pigments red? A resonance Raman microprobe study of retinal chromophore structure in iodopsin. Biochemistry. 33: 2151-60. PMID 8117671 DOI: 10.1021/Bi00174A023  0.355
1994 Zhu H, Clark SM, Benson SC, Rye HS, Glazer AN, Mathies RA. High-sensitivity capillary electrophoresis of double-stranded DNA fragments using monomeric and dimeric fluorescent intercalating dyes. Analytical Chemistry. 66: 1941-8. PMID 8067520 DOI: 10.1021/Ac00085A004  0.764
1994 Woolley AT, Mathies RA. Ultra-high-speed DNA fragment separations using microfabricated capillary array electrophoresis chips. Proceedings of the National Academy of Sciences of the United States of America. 91: 11348-52. PMID 7972062 DOI: 10.1073/Pnas.91.24.11348  0.591
1994 Wang Q, Schoenlein RW, Peteanu LA, Mathies RA, Shank CV. Vibrationally coherent photochemistry in the femtosecond primary event of vision Science. 266: 422-424. PMID 7939680 DOI: 10.1126/Science.7939680  0.655
1994 Lawless MK, Mathies RA. Excited‐state structure and photochemical ring‐opening dynamics of 1,3,5‐cyclo‐octatriene from absolute resonance Raman intensities The Journal of Chemical Physics. 100: 2492-2504. DOI: 10.1063/1.466498  0.343
1994 Mathies RA, Scherer JR, Quesada MA, Rye HS, Glazer AN. Laser-excited confocal-fluorescence gel scanner Review of Scientific Instruments. 65: 807-812. DOI: 10.1063/1.1144905  0.744
1994 Cherepy NJ, Shreve AP, Moore LJ, Franzen S, Boxer SG, Mathies RA. Near-Infrared Resonance Raman Spectroscopy of the Special Pair and the Accessory Bacteriochlorophylls in Photosynthetic Reaction Centers The Journal of Physical Chemistry. 98: 6023-6029. DOI: 10.1021/J100074A032  0.643
1994 Reid PJ, Lawless MK, Wickham SD, Mathies RA. Determination of Pericyclic Photochemical Reaction Dynamics with Resonance Raman Spectroscopy The Journal of Physical Chemistry. 98: 5597-5606. DOI: 10.1021/J100073A004  0.584
1993 Rye HS, Yue S, Quesada MA, Haugland RP, Mathies RA, Glazer AN. Picogram detection of stable dye-DNA intercalation complexes with two-color laser-excited confocal fluorescence gel scanner. Methods in Enzymology. 217: 414-31. PMID 8474342 DOI: 10.1016/0076-6879(93)17080-O  0.757
1993 Benson SC, Mathies RA, Glazer AN. Heterodimeric DNA-binding dyes designed for energy transfer: stability and applications of the DNA complexes. Nucleic Acids Research. 21: 5720-6. PMID 8284220 DOI: 10.1093/Nar/21.24.5720  0.546
1993 Peteanu LA, Schoenlein RW, Wang Q, Mathies RA, Shank CV. The first step in vision occurs in femtoseconds: Complete blue and red spectral studies Proceedings of the National Academy of Sciences of the United States of America. 90: 11762-11766. PMID 8265623 DOI: 10.1073/Pnas.90.24.11762  0.651
1993 Rye HS, Dabora JM, Quesada MA, Mathies RA, Glazer AN. Fluorometric assay using dimeric dyes for double- and single-stranded DNA and RNA with picogram sensitivity. Analytical Biochemistry. 208: 144-50. PMID 7679561 DOI: 10.1006/Abio.1993.1020  0.761
1993 Pollard WT, Mathies RA. Analysis of femtosecond dynamic absorption spectra of nonstationary states. Annual Review of Physical Chemistry. 43: 497-523. PMID 1463575 DOI: 10.1146/Annurev.Pc.43.100192.002433  0.327
1993 Reid PJ, Doig SJ, Wickham SD, Mathies RA. Photochemical ring-opening reactions are complete in picoseconds: a time-resolved UV resonance Raman study of 1,3-cyclohexadiene Journal of the American Chemical Society. 115: 4754-4763. DOI: 10.1021/Ja00064A040  0.583
1993 Reid PJ, Mathies RA, Shreve AP. Resonance Raman intensity analysis of the photochemical hydrogen migration in 1,3,5-cycloheptatriene The Journal of Physical Chemistry. 97: 12691-12699. DOI: 10.1021/J100151A011  0.727
1993 Reid PJ, Shreve AP, Mathies RA. Resonance Raman intensity analysis of the photochemical hydrogen migration in 1,3,5-cycloheptatriene Journal of Physical Chemistry. 97: 12691-12699.  0.69
1992 Rye HS, Yue S, Wemmer DE, Quesada MA, Haugland RP, Mathies RA, Glazer AN. Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications. Nucleic Acids Research. 20: 2803-12. PMID 1614866 DOI: 10.1093/Nar/20.11.2803  0.762
1992 Ames JB, Ros M, Raap J, Lugtenburg J, Mathies RA. Time-resolved ultraviolet resonance Raman studies of protein structure: application to bacteriorhodopsin. Biochemistry. 31: 5328-34. PMID 1606157 DOI: 10.1021/Bi00138A012  0.715
1992 Ames JB, Raap J, Lugtenburg J, Mathies RA. Resonance Raman study of halorhodopsin photocycle kinetics, chromophore structure, and chloride-pumping mechanism. Biochemistry. 31: 12546-54. PMID 1472492 DOI: 10.1021/Bi00165A002  0.716
1992 Huang XC, Quesada MA, Mathies RA. DNA sequencing using capillary array electrophoresis. Analytical Chemistry. 64: 2149-54. PMID 1416049 DOI: 10.1021/Ac00042A021  0.324
1992 Lin SW, Sakmar TP, Franke RR, Khorana HG, Mathies RA. Resonance Raman microprobe spectroscopy of rhodopsin mutants: effect of substitutions in the third transmembrane helix. Biochemistry. 31: 5105-11. PMID 1351402 DOI: 10.1021/Bi00137A003  0.665
1992 Shreve AP, Cherepy NJ, Mathies RA. Effective Rejection of Fluorescence Interference in Raman Spectroscopy Using a Shifted Excitation Difference Technique Applied Spectroscopy. 46: 707-711. DOI: 10.1366/0003702924125122  0.651
1992 Lawless MK, Mathies RA. Excited‐state structure and electronic dephasing time of Nile blue from absolute resonance Raman intensities The Journal of Chemical Physics. 96: 8037-8045. DOI: 10.1063/1.462355  0.337
1992 Mathies RA, Huang XC. Capillary array electrophoresis: an approach to high-speed, high-throughput DNA sequencing Nature. 359: 167-169. DOI: 10.1038/359167A0  0.318
1992 Cromwell MEM, Gebhard R, Li XY, Batenburg ES, Hopman JCP, Lugtenburg J, Mathies RA. Synthesis and vibrational analysis of a locked 14-s-cis conformer of retinal. Journal of the American Chemical Society. 114: 10860-10869. DOI: 10.1021/Ja00053A023  0.311
1992 Peteanu LA, Mathies RA. Resonance Raman intensity analysis of the excited-state proton transfer in 2-hydroxyacetophenone The Journal of Physical Chemistry. 96: 6910-6916. DOI: 10.1021/J100196A012  0.347
1992 Pollard WT, Dexheimer SL, Wang Q, Peteanu LA, Shank CV, Mathies RA. Theory of dynamic absorption spectroscopy of nonstationary states. 4. Application to 12-fs resonant impulsive Raman spectroscopy of bacteriorhodopsin The Journal of Physical Chemistry. 96: 6147-6158. DOI: 10.1021/J100194A013  0.664
1992 Reid PJ, Wickham SD, Mathies RA. Picosecond UV resonance Raman spectroscopy of the photochemical hydrogen migration in 1,3,5-cycloheptatriene The Journal of Physical Chemistry. 96: 5720-5724. DOI: 10.1021/J100193A013  0.608
1992 Loppnow GR, Mathies RA, Middendorf TR, Gottfried DS, Boxer SG. Photochemical hole-burning spectroscopy of bovine rhodopsin and bacteriorhodopsin The Journal of Physical Chemistry. 96: 737-745. DOI: 10.1021/J100181A040  0.623
1992 Huang XC, Quesada MA, Mathies RA. Capillary array electrophoresis using laser-excited confocal fluorescence detection Analytical Chemistry. 64: 967-972. DOI: 10.1021/Ac00032A025  0.337
1992 Dexheimer SL, Wang Q, Peteanu LA, Pollard WT, Mathies RA, Shank CV. Femtosecond impulsive excitation of nonstationary vibrational states in bacteriorhodopsin Chemical Physics Letters. 188: 61-66. DOI: 10.1016/0009-2614(92)85089-S  0.659
1991 Netto MM, Fodor SP, Mathies RA. Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin. Photochemistry and Photobiology. 52: 605-7. PMID 2284352 DOI: 10.1111/J.1751-1097.1990.Tb01806.X  0.344
1991 Lin SW, Fodor SP, Miercke LJ, Shand RF, Betlach MC, Stroud RM, Mathies RA. Resonance Raman spectra of bacteriorhodopsin mutants with substitutions at Asp-85, Asp-96, and Arg-82 Photochemistry and Photobiology. 53: 341-346. PMID 2062880 DOI: 10.1111/J.1751-1097.1991.Tb03638.X  0.341
1991 Rye HS, Quesada MA, Peck K, Mathies RA, Glazer AN. High-sensitivity two-color detection of double-stranded DNA with a confocal fluorescence gel scanner using ethidium homodimer and thiazole orange. Nucleic Acids Research. 19: 327-33. PMID 2014172 DOI: 10.1093/Nar/19.2.327  0.76
1991 Schoenlein RW, Peteanu LA, Mathies RA, Shank CV. The first step in vision: Femtosecond isomerization of rhodopsin Science. 254: 412-415. PMID 1925597 DOI: 10.1126/Science.1925597  0.643
1991 Mathies RA, Lin SW, Ames JB, Pollard WT. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annual Review of Biophysics and Biophysical Chemistry. 20: 491-518. PMID 1867724 DOI: 10.1146/annurev.bb.20.060191.002423  0.658
1991 Shreve AP, Cherepy NJ, Franzen S, Boxer SG, Mathies RA. Rapid-flow resonance Raman spectroscopy of bacterial photosynthetic reaction centers. Proceedings of the National Academy of Sciences of the United States of America. 88: 11207-11. PMID 1763034 DOI: 10.1073/Pnas.88.24.11207  0.654
1991 Doig SJ, Reid PJ, Mathies RA. Picosecond time-resolved resonance Raman spectroscopy of bacteriorhodopsin's J, K, and KL intermediates The Journal of Physical Chemistry. 95: 6372-6379. DOI: 10.1021/J100169A054  0.597
1990 Glazer AN, Peck K, Mathies RA. A stable double-stranded DNA-ethidium homodimer complex: application to picogram fluorescence detection of DNA in agarose gels. Proceedings of the National Academy of Sciences of the United States of America. 87: 3851-5. PMID 2339125 DOI: 10.1073/Pnas.87.10.3851  0.566
1990 Fodor SP, Lagarias JC, Mathies RA. Resonance Raman analysis of the Pr and Pfr forms of phytochrome. Biochemistry. 29: 11141-6. PMID 2271702 DOI: 10.1021/Bi00502A018  0.532
1990 Loppnow GR, Miley ME, Mathies RA, Liu RS, Kandori H, Shichida Y, Fukada Y, Yoshizawa T. Structure of the retinal chromophore in 7,9-dicis-rhodopsin. Biochemistry. 29: 8985-91. PMID 2271572 DOI: 10.1021/Bi00490A015  0.661
1990 Smith SO, Palings I, Miley ME, Courtin J, de Groot H, Lugtenburg J, Mathies RA, Griffin RG. Solid-state NMR studies of the mechanism of the opsin shift in the visual pigment rhodopsin. Biochemistry. 29: 8158-64. PMID 2261469 DOI: 10.1021/Bi00487A025  0.527
1990 Mathies RA, Peck K, Stryer L. Optimization of high-sensitivity fluorescence detection. Analytical Chemistry. 62: 1786-91. PMID 2240569 DOI: 10.1021/Ac00216A012  0.709
1990 Ames JB, Mathies RA. The role of back-reactions and proton uptake during the N----O transition in bacteriorhodopsin's photocycle: a kinetic resonance Raman study. Biochemistry. 29: 7181-90. PMID 2169875 DOI: 10.1021/Bi00483A005  0.686
1990 Pollard WT, Lee S, Mathies RA. Wave packet theory of dynamic absorption spectra in femtosecond pump–probe experiments The Journal of Chemical Physics. 92: 4012-4029. DOI: 10.1063/1.457815  0.302
1990 Ames JB, Bolton SR, Netto MM, Mathies RA. Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin: evidence against tyrosinate in the photocycle Journal of the American Chemical Society. 112: 9007-9009. DOI: 10.1021/Ja00180A071  0.714
1990 Reid PJ, Doig SJ, Mathies RA. Picosecond time-resolved UV resonance Raman spectroscopy of the photochemical ring opening of 1,3,5-cyclooctatriene and .alpha.-phellandrene The Journal of Physical Chemistry. 94: 8396-8399. DOI: 10.1021/J100385A006  0.585
1990 Trulson MO, Mathies RA. Excited-state structure and dynamics of isoprene from absolute resonance Raman intensities The Journal of Physical Chemistry. 94: 5741-5747. DOI: 10.1021/J100378A026  0.324
1990 Pollard WT, Fragnito HL, Bigot JY, Shank CV, Mathies RA. Quantum-mechanical theory for 6 fs dynamic absorption spectroscopy and its application to nile blue Chemical Physics Letters. 168: 239-245. DOI: 10.1016/0009-2614(90)85603-A  0.339
1990 Mathies RA, Peck K, Stryer L. High-sensitivity single-molecule fluorescence detection Proceedings of Spie - the International Society For Optical Engineering. 1205: 52-59.  0.676
1989 Ames JB, Fodor SP, Gebhard R, Raap J, van den Berg EM, Lugtenburg J, Mathies RA. Bacteriorhodopsin's M412 intermediate contains a 13-cis, 14-s-trans, 15-anti-retinal Schiff base chromophore. Biochemistry. 28: 3681-7. PMID 2751988 DOI: 10.1021/Bi00435A009  0.702
1989 Peck K, Stryer L, Glazer AN, Mathies RA. Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. Proceedings of the National Academy of Sciences of the United States of America. 86: 4087-91. PMID 2726766 DOI: 10.1073/Pnas.86.11.4087  0.761
1989 Loppnow GR, Barry BA, Mathies RA. Why are blue visual pigments blue? A resonance Raman microprobe study Proceedings of the National Academy of Sciences of the United States of America. 86: 1515-1518. PMID 2493645 DOI: 10.1073/Pnas.86.5.1515  0.753
1989 Pollard WT, Cruz CHB, Shank CV, Mathies RA. Direct observation of the excited‐state cis–trans photoisomerization of bacteriorhodopsin: Multilevel line shape theory for femtosecond dynamic hole burning and its application The Journal of Chemical Physics. 90: 199-208. DOI: 10.1063/1.456658  0.33
1989 Lee S, Pollard WT, Mathies RA. Classical theory for real‐time femtosecond probing of the NaI* photodissociation The Journal of Chemical Physics. 90: 6146-6150. DOI: 10.1063/1.456330  0.321
1989 Trulson MO, Dollinger GD, Mathies RA. Excited state structure and femtosecond ring‐opening dynamics of 1,3‐cyclohexadiene from absolute resonance Raman intensities The Journal of Chemical Physics. 90: 4274-4281. DOI: 10.1063/1.455784  0.35
1989 Loppnow GR, Mathies RA. A 77‐K cold stage for Raman microprobes and optical microscopy Review of Scientific Instruments. 60: 2628-2630. DOI: 10.1063/1.1140682  0.634
1989 Reid PJ, Doig SJ, Mathies RA. Direct measurement of the photochemical ring opening in 1,3-cyclohexadiene by picosecond time-resolved UV resonance Raman Chemical Physics Letters. 156: 163-168. DOI: 10.1016/S0009-2614(89)87113-1  0.623
1988 Loppnow GR, Mathies RA. Excited-state structure and isomerization dynamics of the retinal chromophore in rhodopsin from resonance Raman intensities. Biophysical Journal. 54: 35-43. PMID 3416032 DOI: 10.1016/S0006-3495(88)82928-X  0.679
1988 Mathies RA, Brito Cruz CH, Pollard WT, Shank CV. Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin. Science (New York, N.Y.). 240: 777-9. PMID 3363359 DOI: 10.1126/Science.3363359  0.352
1988 Fodor SP, Pollard WT, Gebhard R, van den Berg EM, Lugtenburg J, Mathies RA. Bacteriorhodopsin's L550 intermediate contains a C14-C15 s-trans-retinal chromophore. Proceedings of the National Academy of Sciences of the United States of America. 85: 2156-60. PMID 3353373 DOI: 10.1073/Pnas.85.7.2156  0.326
1988 Fodor SP, Lagarias JC, Mathies RA. Resonance Raman spectra of the Pr-form of phytochrome. Photochemistry and Photobiology. 48: 129-36. PMID 3222324 DOI: 10.1111/J.1751-1097.1988.Tb02797.X  0.573
1988 Lugtenburg J, Mathies RA, Griffin RG, Herzfeld J. Structure and function of rhodopsins from solid state NMR and resonance Raman spectroscopy of isotopic retinal derivatives. Trends in Biochemical Sciences. 13: 388-93. PMID 3072701 DOI: 10.1016/0968-0004(88)90181-8  0.31
1988 Fodor SP, Ames JB, Gebhard R, van den Berg EM, Stoeckenius W, Lugtenburg J, Mathies RA. Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism. Biochemistry. 27: 7097-101. PMID 2848578 DOI: 10.1021/Bi00418A064  0.706
1987 Smith SO, Palings I, Copié V, Raleigh DP, Courtin J, Pardoen JA, Lugtenburg J, Mathies RA, Griffin RG. Low-temperature solid-state 13C NMR studies of the retinal chromophore in rhodopsin. Biochemistry. 26: 1606-11. PMID 3593680 DOI: 10.1021/Bi00380A018  0.517
1987 Barry B, Mathies RA. Raman microscope studies on the primary photochemistry of vertebrate visual pigments with absorption maxima from 430 to 502 nm. Biochemistry. 26: 59-64. PMID 3493806 DOI: 10.1021/Bi00375A009  0.606
1987 Fodor SPA, Bogomolni RA, Mathies RA. Structure of the retinal chromophore in the hRL intermediate of halorhodopsin from resonance Raman spectroscopy Biochemistry. 26: 6775-6778. PMID 3427042 DOI: 10.1021/Bi00395A029  0.355
1987 Smith SO, Braiman MS, Myers AB, Pardoen JA, Courtin JML, Winkel C, Lugtenburg J, Mathies RA. Vibrational analysis of the all-trans-retinal chromophore in light-adapted bacteriorhodopsin Journal of the American Chemical Society. 109: 3108-3125. DOI: 10.1021/Ja00244A038  0.709
1987 Smith SO, Pardoen JA, Lugtenburg J, Mathies RA. Vibrational analysis of the 13-cis-retinal chromophore in dark-adapted bacteriorhodopsin The Journal of Physical Chemistry. 91: 804-819. DOI: 10.1021/J100288A011  0.53
1987 SMITH SO, BRAIMAN MS, MYERS AB, PARDOEN JA, COURTIN JML, WINKEL C, LUGTENBURG J, MATHIES RA. ChemInform Abstract: Vibrational Analysis of the all-trans-Retinal Chromophore in Light-Adapted Bacteriorhodopsin Cheminform. 18. DOI: 10.1002/chin.198738046  0.692
1987 SMITH SO, PARDOEN JA, LUGTENBURG J, MATHIES RA. ChemInform Abstract: Vibrational Analysis of the 13-cis-Retinal Chromophore in Dark-Adapted Bacteriorhodopsin Cheminform. 18. DOI: 10.1002/chin.198725036  0.475
1986 Smith SO, Hornung I, van der Steen R, Pardoen JA, Braiman MS, Lugtenburg J, Mathies RA. Are C14-C15 single bond isomerizations of the retinal chromophore involved in the proton-pumping mechanism of bacteriorhodopsin? Proceedings of the National Academy of Sciences of the United States of America. 83: 967-71. PMID 3006035 DOI: 10.1073/Pnas.83.4.967  0.719
1986 Myers AB, Trulson MO, Pardoen JA, Heeremans C, Lugtenburg J, Mathies RA. Absolute resonance Raman intensities demonstrate that the spectral broadening induced by the β‐ionone ring in retinal is homogeneous The Journal of Chemical Physics. 84: 633-640. DOI: 10.1063/1.450611  0.317
1986 LUGTENBURG J, MURADIN-SZWEYKOWSKA M, HEEREMANS C, PARDOEN JA, HARBISON GS, HERZFELD J, GRIFFIN RG, SMITH SO, MATHIES RA. ChemInform Abstract: Mechanism for the Opsin Shift of Retinal′s Absorption in Bacteriorhodopsin. Chemischer Informationsdienst. 17. DOI: 10.1002/Chin.198640067  0.504
1985 Harbison GS, Smith SO, Pardoen JA, Courtin JM, Lugtenburg J, Herzfeld J, Mathies RA, Griffin RG. Solid-state 13C NMR detection of a perturbed 6-s-trans chromophore in bacteriorhodopsin. Biochemistry. 24: 6955-62. PMID 4074732 DOI: 10.1021/Bi00345A031  0.519
1985 Smith SO, Myers AB, Mathies RA, Pardoen JA, Winkel C, van den Berg EM, Lugtenburg J. Vibrational analysis of the all-trans retinal protonated Schiff base. Biophysical Journal. 47: 653-64. PMID 4016185 DOI: 10.1016/S0006-3495(85)83961-8  0.528
1985 Smith SO, Lugtenburg J, Mathies RA. Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy. The Journal of Membrane Biology. 85: 95-109. PMID 4009698 DOI: 10.1007/Bf01871263  0.549
1985 Smith SO, Mathies RA. Resonance Raman spectra of the acidified and deionized forms of bacteriorhodopsin. Biophysical Journal. 47: 251-4. PMID 3978203 DOI: 10.1016/S0006-3495(85)83899-6  0.564
1984 Smith SO, Myers AB, Pardoen JA, Winkel C, Mulder PP, Lugtenburg J, Mathies R. Determination of retinal Schiff base configuration in bacteriorhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 81: 2055-9. PMID 16593445 DOI: 10.1073/Pnas.81.7.2055  0.524
1984 Harbison GS, Smith SO, Pardoen JA, Winkel C, Lugtenburg J, Herzfeld J, Mathies R, Griffin RG. Dark-adapted bacteriorhodopsin contains 13-cis, 15-syn and all-trans, 15-anti retinal Schiff bases. Proceedings of the National Academy of Sciences of the United States of America. 81: 1706-9. PMID 6584904 DOI: 10.1073/Pnas.81.6.1706  0.535
1984 Rothschild KJ, Marrero H, Braiman M, Mathies R. Primary photochemistry of bacteriorhodopsin: comparison of Fourier transform infrared difference spectra with resonance Raman spectra Photochemistry and Photobiology. 40: 675-679. PMID 6514815 DOI: 10.1111/J.1751-1097.1984.Tb05359.X  0.735
1984 Harbison GS, Smith SO, Pardoen JA, Mulder PP, Lugtenburg J, Herzfeld J, Mathies R, Griffin RG. Solid-state 13C NMR studies of retinal in bacteriorhodopsin. Biochemistry. 23: 2662-7. PMID 6466605 DOI: 10.1021/Bi00307A019  0.523
1984 Myers AB, Mathies RA. Excited‐state torsional dynamics of cis‐stilbene from resonance Raman intensities The Journal of Chemical Physics. 81: 1552-1558. DOI: 10.1063/1.447884  0.348
1983 Myers AB, Harris RA, Mathies RA. Resonance Raman excitation profiles of bacteriorhodopsin The Journal of Chemical Physics. 79: 603-613. DOI: 10.1063/1.445807  0.333
1983 Ponder M, Mathies R. Excited-state polarizabilities and dipole moments of diphenylpolyenes and retinal The Journal of Physical Chemistry. 87: 5090-5098. DOI: 10.1021/J150643A010  0.764
1983 Smith SO, Pardoen JA, Mulder PPJ, Curry B, Lugtenburg J, Mathies R. Chromophore structure in bacteriorhodopsin's O640 photointermediate Biochemistry. 22: 6141-6148. DOI: 10.1021/Bi00295A016  0.465
1982 Eyring G, Curry B, Broek A, Lugtenburg J, Mathies R. Assignment and interpretation of hydrogen out-of-plane vibrations in the resonance Raman spectra of rhodopsin and bathorhodopsin. Biochemistry. 21: 384-93. PMID 7074022 DOI: 10.1021/Bi00531A028  0.316
1982 Barry B, Mathies R. Resonance Raman microscopy of rod and cone photoreceptors. Journal of Cell Biology. 94: 479-482. PMID 6809771 DOI: 10.1083/Jcb.94.2.479  0.356
1982 Braiman M, Mathies R. Resonance Raman spectra of bacteriorhodopsin's primary photoproduct: evidence for a distorted 13-cis retinal chromophore. Proceedings of the National Academy of Sciences of the United States of America. 79: 403-7. PMID 6281770 DOI: 10.1073/Pnas.79.2.403  0.661
1982 Braiman M, Mathies R. [77] Spinning sample raman spectroscopy at 77°°K: Bacteriorhodopsin's primary photoproduct Methods in Enzymology. 88: 648-659. DOI: 10.1016/0076-6879(82)88080-4  0.643
1982 Mathies R. [75] Resonance raman spectroscopy of rhodopsin and bacteriorhodopsin isotopic analogs Methods in Enzymology. 88: 633-643. DOI: 10.1016/0076-6879(82)88078-6  0.337
1982 Myers AB, Mathies RA, Tannor DJ, Heller EJ. Excited state geometry changes from preresonance Raman intensities: Isoprene and hexatriene The Journal of Chemical Physics. 77: 3857-3866. DOI: 10.1002/Chin.198303045  0.305
1981 Braiman M, Mathies R. Resonance Raman evidence for an all-trans to 13-cis isomerization in the proton-pumping cycle of bacteriorhodopsin. Biochemistry. 19: 5421-8. PMID 7448177 DOI: 10.1021/Bi00564A042  0.651
1980 Eyring G, Curry B, Mathies R, Fransen R, Palings I, Lugtenburg J. Interpretation of the resonance Raman spectrum of bathorhodopsin based on visual pigment analogues. Biochemistry. 19: 2410-8. PMID 7387982 DOI: 10.1021/Bi00552A020  0.317
1980 Eyring G, Curry B, Mathies R, Broek A, Lugtenburg J. Assignment of the anomalous resonance Raman vibrations of bathorhodopsin Journal of the American Chemical Society. 102: 5390-5392. DOI: 10.1021/Ja00536A046  0.306
1979 Eyring G, Mathies R. Resonance Raman studies of bathorhodopsin: evidence for a protonated Schiff base linkage. Proceedings of the National Academy of Sciences of the United States of America. 76: 33-7. PMID 284349 DOI: 10.1073/Pnas.76.1.33  0.342
1978 Mathies R, Yu N. Raman spectroscopy with intensified vidicon detectors: A study of intact bovine lens proteins Journal of Raman Spectroscopy. 7: 349-352. DOI: 10.1002/Jrs.1250070613  0.34
1977 Mathies R, Freedman TB, Stryer L. Resonance Raman studies of the conformation of retinal in rhodopsin and isorhodopsin. Journal of Molecular Biology. 109: 367-72. PMID 839546 DOI: 10.1016/S0022-2836(77)80040-5  0.694
1976 Mathies R, Stryer L. Retinal has a highly dipolar vertically excited singlet state: implications for vision. Proceedings of the National Academy of Sciences of the United States of America. 73: 2169-73. PMID 1065867 DOI: 10.1073/pnas.73.7.2169  0.686
1976 Mathies R, Oseroff AR, Stryer L. Rapid-flow resonance Raman spectroscopy of photolabile molecules: rhodopsin and isorhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 73: 1-5. PMID 1061102 DOI: 10.1073/pnas.73.1.1  0.686
1975 Veatch WR, Mathies R, Eisenberg M, Stryer L. Simultaneous fluorescence and conductance studies of planar bilayer membranes containing a highly active and fluorescent analog of gramicidin A. Journal of Molecular Biology. 99: 75-92. PMID 54431 DOI: 10.1016/S0022-2836(75)80160-4  0.684
Show low-probability matches.