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Kalyan C. Vinnakota, Ph.D. - Publications

Affiliations: 
2001-2006 Bioengineering University of Washington, Seattle, Seattle, WA 
 2007-2013 Biotechnology and Bioengineering Center Medical College of Wisconsin, Milwaukee, WI, United States 
 2013-2016 Molecular and Integrative Physiology University of Michigan, Ann Arbor, Ann Arbor, MI 
 2016-2019 DoD Biotechnology HPC Software Applications Institute Henry M Jackson Foundation for the Advancement of Military Medicine 
 2019-2020 Computational Medicine and Biology CFD Research Corporation 
 2020- Vision Restoration Initiative Gilbert Family Foundation 
Area:
Quantitative Medicine, Systems Biology, Quantitative Systems Pharmacology, Ras, Quantitative Physiology
Website:
https://scholar.google.com/citations?user=U5GhgJEAAAAJ&hl=en
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Moxley MA, Vinnakota KC, Bazil JN, Qi NR, Beard DA. Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats. Plos Computational Biology. 14: e1005982. PMID 29474500 DOI: 10.1371/Journal.Pcbi.1005982  0.371
2017 Liu A, Philip J, Vinnakota KC, Van den Bergh F, Tabima DM, Hacker T, Beard DA, Chesler NC. Estrogen maintains mitochondrial content and function in the right ventricle of rats with pulmonary hypertension. Physiological Reports. 5. PMID 28320896 DOI: 10.14814/Phy2.13157  0.354
2016 Tewari SG, Bugenhagen SM, Vinnakota KC, Rice JJ, Janssen PM, Beard DA. Influence of metabolic dysfunction on cardiac mechanics in decompensated hypertrophy and heart failure. Journal of Molecular and Cellular Cardiology. PMID 27085901 DOI: 10.1016/J.Yjmcc.2016.04.003  0.358
2016 Holzem KM, Vinnakota KC, Ravikumar VK, Madden EJ, Ewald GA, Dikranian K, Beard DA, Efimov IR. Mitochondrial structure and function are not different between nonfailing donor and end-stage failing human hearts. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 30: 2698-707. PMID 27075244 DOI: 10.1096/Fj.201500118R  0.339
2016 Vinnakota KC, Bazil JN, Van den Bergh F, Wiseman RW, Beard DA. Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria. Biophysical Journal. 110: 972-80. PMID 26910434 DOI: 10.1016/J.Bpj.2016.01.003  0.64
2016 Bazil JN, Beard DA, Vinnakota KC. Catalytic Coupling of Oxidative Phosphorylation, ATP Demand, and Reactive Oxygen Species Generation. Biophysical Journal. 110: 962-71. PMID 26910433 DOI: 10.1016/J.Bpj.2015.09.036  0.413
2016 Vinnakota KC, Singhal A, Van den Bergh F, Bagher-Oskouei M, Wiseman RW, Beard DA. Open-Loop Control of Oxidative Phosphorylation in Skeletal and Cardiac Muscle Mitochondria by Ca(2.). Biophysical Journal. 110: 954-61. PMID 26910432 DOI: 10.1016/J.Bpj.2015.12.018  0.665
2015 Dasika SK, Vinnakota KC, Beard DA. Characterization of the kinetics of cardiac cytosolic malate dehydrogenase and comparative analysis of cytosolic and mitochondrial isoforms. Biophysical Journal. 108: 420-30. PMID 25606689 DOI: 10.1016/J.Bpj.2014.11.3466  0.468
2015 Dasika SK, Vinnakota KC, Beard DA. Determination of the catalytic mechanism for mitochondrial malate dehydrogenase. Biophysical Journal. 108: 408-19. PMID 25606688 DOI: 10.1016/J.Bpj.2014.11.3467  0.439
2013 Bazil JN, Vinnakota KC, Wu F, Beard DA. Analysis of the kinetics and bistability of ubiquinol:cytochrome c oxidoreductase. Biophysical Journal. 105: 343-55. PMID 23870256 DOI: 10.1016/J.Bpj.2013.05.033  0.434
2013 Bazil J, Vinnakota KC, Fan W, Beard DA. A Minimal Model of Ubiquinol:Cytochrome C Reductase Capable of Simulating Superoxide Production Biophysical Journal. 104: 304a. DOI: 10.1016/J.Bpj.2012.11.1693  0.432
2012 Vinnakota KC, Wu F, Beard DA. A Quantitative Description of Oxidative Phosphorylation in Cardiac Mitochondria Biophysical Journal. 102: 572a. DOI: 10.1016/J.Bpj.2011.11.3114  0.429
2011 Vinnakota KC, Dash RK, Beard DA. Stimulatory effects of calcium on respiration and NAD(P)H synthesis in intact rat heart mitochondria utilizing physiological substrates cannot explain respiratory control in vivo. The Journal of Biological Chemistry. 286: 30816-22. PMID 21757763 DOI: 10.1074/Jbc.M111.242529  0.375
2011 Mescam M, Vinnakota KC, Beard DA. Identification of the catalytic mechanism and estimation of kinetic parameters for fumarase. The Journal of Biological Chemistry. 286: 21100-9. PMID 21498518 DOI: 10.1074/Jbc.M110.214452  0.417
2011 Vinnakota KC, Beard DA. Kinetic analysis and design of experiments to identify the catalytic mechanism of the monocarboxylate transporter isoforms 4 and 1. Biophysical Journal. 100: 369-80. PMID 21244833 DOI: 10.1016/J.Bpj.2010.11.079  0.413
2011 Vinnakota KC, Kushmerick MJ. Point: Muscle lactate and H⁺ production do have a 1:1 association in skeletal muscle. Journal of Applied Physiology (Bethesda, Md. : 1985). 110: 1487-9; discussion 1. PMID 21212251 DOI: 10.1152/Japplphysiol.01506.2010  0.584
2011 Vinnakota KC, Kushmerick MJ. Last Word on Point:Counterpoint: Muscle lactate and H+ production do/do not have a 1:1 association Journal of Applied Physiology. 110: 1497. DOI: 10.1152/Japplphysiol.00270.2011  0.617
2010 Li X, Dash RK, Pradhan RK, Qi F, Thompson M, Vinnakota KC, Wu F, Yang F, Beard DA. A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle. The Journal of Physical Chemistry. B. 114: 16068-82. PMID 20446702 DOI: 10.1021/Jp911381P  0.353
2010 Vinnakota KC, Rusk J, Palmer L, Shankland E, Kushmerick MJ. Common phenotype of resting mouse extensor digitorum longus and soleus muscles: equal ATPase and glycolytic flux during transient anoxia. The Journal of Physiology. 588: 1961-83. PMID 20308252 DOI: 10.1113/Jphysiol.2009.185934  0.631
2009 Vinnakota KC, Wu F, Kushmerick MJ, Beard DA. Multiple ion binding equilibria, reaction kinetics, and thermodynamics in dynamic models of biochemical pathways. Methods in Enzymology. 454: 29-68. PMID 19216922 DOI: 10.1016/S0076-6879(08)03802-0  0.548
2009 Dash RK, Thompson MD, Vinnakota KC, Haumann J, Aldakkak M, Camara AK, Stowe DF, Daniel BA. Modeling Regulation of Mitochondrial Free Ca2+ by ATP/ADP-Dependent Ca2+ Buffering Biophysical Journal. 96: 8a. DOI: 10.1016/J.Bpj.2008.12.937  0.334
2008 Beard DA, Vinnakota KC, Wu F. Detailed enzyme kinetics in terms of biochemical species: study of citrate synthase. Plos One. 3: e1825. PMID 18350161 DOI: 10.1371/Journal.Pone.0001825  0.383
2007 Wu F, Yang F, Vinnakota KC, Beard DA. Computer modeling of mitochondrial tricarboxylic acid cycle, oxidative phosphorylation, metabolite transport, and electrophysiology. The Journal of Biological Chemistry. 282: 24525-37. PMID 17591785 DOI: 10.1074/Jbc.M701024200  0.508
2006 Vinnakota K, Kemp ML, Kushmerick MJ. Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kinetics. Biophysical Journal. 91: 1264-87. PMID 16617075 DOI: 10.1529/Biophysj.105.073296  0.663
2004 Vinnakota KC, Bassingthwaighte JB. Myocardial density and composition: a basis for calculating intracellular metabolite concentrations. American Journal of Physiology. Heart and Circulatory Physiology. 286: H1742-9. PMID 14693681 DOI: 10.1152/Ajpheart.00478.2003  0.303
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