Minou Bina - Publications

Chemistry Purdue University, West Lafayette, IN, United States 
transcriptional control elements in human chromosomes

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Bina M, Wyss P. Impact of the MLL1 morphemes on codon utilization and preservation in CpG Islands. Biopolymers. 103: 480-90. PMID 25991579 DOI: 10.1002/Bip.22681  0.96
2015 Smith EN, Ghia EM, DeBoever CM, Rassenti LZ, Jepsen K, Yoon KA, Matsui H, Rozenzhak S, Alakus H, Shepard PJ, Dai Y, Khosroheidari M, Bina M, Gunderson KL, Messer K, et al. Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development. Blood Cancer Journal. 5: e303. PMID 25860294 DOI: 10.1038/Bcj.2015.14  0.96
2014 Tyaginov S, Bina M, Franco J, Wimmer Y, Osintsev D, Kaczer B, Grasser T. A predictive physical model for hot-carrier degradation in ultra-scaled MOSFETs International Conference On Simulation of Semiconductor Processes and Devices, Sispad. 89-92. DOI: 10.1109/SISPAD.2014.6931570  0.01
2014 Tyaginov S, Bina M, Franco J, Osintsev D, Triebl O, Kaczer B, Grasser T. Physical modeling of hot-carrier degradation for short-and long-channel MOSFETs Ieee International Reliability Physics Symposium Proceedings. XT.16.1-XT.16.8. DOI: 10.1109/IRPS.2014.6861193  0.01
2013 Bina M, Wyss P, Novorolsky E, Zulkelfi N, Xue J, Price R, Fay M, Gutmann Z, Fogler B, Wang D. Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin. Bmc Genomics. 14: 927. PMID 24373511 DOI: 10.1186/1471-2164-14-927  0.96
2013 Bina M. Gene regulation. Methods in Molecular Biology (Clifton, N.J.). 977: 1-11. PMID 23436349 DOI: 10.1007/978-1-62703-284-1_1  0.96
2013 Goes W, Toledano-Luque M, Schanovsky F, Bina M, Baumgartner O, Kaczer B, Grasser T. Multi-phonon processes as the origin of reliability issues Ecs Transactions. 58: 31-47. DOI: 10.1149/05807.0031ecst  0.01
2013 Goes W, Toledano-Luque M, Baumgartner O, Bina M, Schanovsky F, Kaczer B, Grasser T. Understanding correlated drain and gate current fluctuations Proceedings of the International Symposium On the Physical and Failure Analysis of Integrated Circuits, Ipfa. 51-56. DOI: 10.1109/IPFA.2013.6599125  0.01
2013 Toledano-Luque M, Kaczer B, Franco J, Roussel PJ, Bina M, Grasser T, Cho M, Weckx P, Groeseneken G. Degradation of time dependent variability due to interface state generation Digest of Technical Papers - Symposium On Vlsi Technology. T190-T191.  0.01
2013 Bina M. Preface Methods in Molecular Biology. 977: v-vii.  0.96
2011 Bina M. Predicting nucleosome-positioning signals: comment on "Cracking the chromatin code: precise rule of nucleosome positioning" by E.N. Trifonov. Physics of Life Reviews. 8: 59-61; discussion 69. PMID 21292574 DOI: 10.1016/J.Plrev.2011.01.012  0.96
2011 Bina M, Aichinger T, Pobegen G, Gos W, Grasser T. Modeling of DCIV recombination currents using a multistate multiphonon model Ieee International Integrated Reliability Workshop Final Report. 27-31. DOI: 10.1109/IIRW.2011.6142581  0.01
2009 Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Discovering sequences with potential regulatory characteristics. Genomics. 93: 314-22. PMID 19084590 DOI: 10.1016/J.Ygeno.2008.11.008  0.96
2008 Bina M. The genome browser at UCSC for locating genes, and much more! Molecular Biotechnology. 38: 269-75. PMID 18058261 DOI: 10.1007/S12033-007-9019-2  0.96
2006 Wyss P, Lazarus SA, Bina M. A program toolkit for the analysis of regulatory regions of genes. Methods in Molecular Biology (Clifton, N.J.). 338: 135-52. PMID 16888356 DOI: 10.1385/1-59745-097-9:135  0.96
2006 Bina M, Wyss P, Shah SR. A database of 9-mers from promoter regions of human protein-coding genes. Methods in Molecular Biology (Clifton, N.J.). 338: 129-34. PMID 16888355 DOI: 10.1385/1-59745-097-9:129  0.96
2006 Bina M. Identification and mapping of paralogous genes on a known genomic DNA sequence. Methods in Molecular Biology (Clifton, N.J.). 338: 21-9. PMID 16888348 DOI: 10.1385/1-59745-097-9:21  0.96
2006 Bina M. Use of genome browsers to locate your favorite genes. Methods in Molecular Biology (Clifton, N.J.). 338: 1-7. PMID 16888346 DOI: 10.1385/1-59745-097-9:1  0.96
2006 Pares-Matos EI, Milligan JS, Bina M. Exploring transcription factor binding properties of several non-coding DNA sequence elements in the human NF-IL6 gene. Journal of Molecular Biology. 357: 732-47. PMID 16458921 DOI: 10.1016/J.Jmb.2005.12.071  0.96
2004 Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84: 929-40. PMID 15533710 DOI: 10.1016/J.Ygeno.2004.08.013  0.96
2004 Xie J, Li KC, Bina M. A Bayesian insertion/deletion algorithm for distant protein motif searching via entropy filtering Journal of the American Statistical Association. 99: 409-420. DOI: 10.1198/016214504000000377  0.96
2002 Gan TI, Rowen L, Nesbitt R, Roe BA, Wu H, Hu P, Yao Z, Kim UJ, O'Sickey T, Bina M. Genomic organization of human TCF12 gene and spliced mRNA variants producing isoforms of transcription factor HTF4. Cytogenetic and Genome Research. 98: 245-8. PMID 12826747 DOI: 10.1159/000071042  0.96
2002 Bina M, Young J, Pares-Matos EI. A conceptual scale for correlating cytogenetic and physical maps. Cytogenetic and Genome Research. 97: 136-9. PMID 12438753 DOI: 10.1159/000064061  0.96
2002 Buckner AE, Tesmer VM, Bina M. Regulation of HIV-1 transcription by NF-IL6 in activated Jurkat T cells. Virus Research. 89: 53-63. PMID 12367750 DOI: 10.1016/S0168-1702(02)00110-7  0.96
2002 Yang Y, Tesmer VM, Bina M. Regulation of HIV-1 transcription in activated monocyte macrophages. Virology. 299: 256-265. PMID 12202228 DOI: 10.1006/Viro.2001.1530  0.96
2002 Yang Y, Pares-Matos EI, Tesmer VM, Dai C, Ashworth S, Huai J, Bina M. Organization of the promoter region of the human NF-IL6 gene. Biochimica Et Biophysica Acta. 1577: 102-8. PMID 12151100 DOI: 10.1016/S0167-4781(02)00401-3  0.96
2001 Bina M, Crowely E. Sequence patterns defining the 5' boundary of human genes. Biopolymers. 59: 347-55. PMID 11514938 DOI: 10.1002/1097-0282(20011015)59:5<347::Aid-Bip1032>3.0.Co;2-6  0.96
2001 Geng M, Zhang X, Bina M, Regnier F. Proteomics of glycoproteins based on affinity selection of glycopeptides from tryptic digests. Journal of Chromatography. B, Biomedical Sciences and Applications. 752: 293-306. PMID 11270868 DOI: 10.1016/S0378-4347(00)00550-8  0.96
2000 Choe W, Ersoy OK, Bina M. Neural network schemes for detecting rare events in human genomic DNA. Bioinformatics (Oxford, England). 16: 1062-72. PMID 11159325 DOI: 10.1093/Bioinformatics/16.12.1062  0.96
2000 Ji J, Chakraborty A, Geng M, Zhang X, Amini A, Bina M, Regnier F. Strategy for qualitative and quantitative analysis in proteomics based on signature peptides. Journal of Chromatography. B, Biomedical Sciences and Applications. 745: 197-210. PMID 10997715 DOI: 10.1016/S0378-4347(00)00192-4  0.96
2000 Bina M, Demmon S, Pares-Matos EI. Syndromes associated with Homo sapiens pol II regulatory genes. Progress in Nucleic Acid Research and Molecular Biology. 64: 171-219. PMID 10697410 DOI: 10.1016/S0079-6603(00)64005-9  0.96
1999 Stein A, Bina M. A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment. Nucleic Acids Research. 27: 848-53. PMID 9889282 DOI: 10.1093/Nar/27.3.848  0.96
1999 Choe W, Ersoy OK, Bina M. Rare event detection in genomic sequences by stratified sampling and decision trees Intelligent Engineering Systems Through Artificial Neural Networks. 9: 465-470.  0.96
1998 Rajadhyaksha A, Rivière M, Van Vooren P, Szpirer J, Szpirer C, Babin J, Bina M. Assignment of AR1, transcription factor 20 (TCF20), to human chromosome 22q13.3 with somatic cell hybrids and in situ hybridization. Cytogenetics and Cell Genetics. 81: 176-7. PMID 9730594 DOI: 10.1159/000015021  0.96
1998 Stein A, Hill SA, Cheng Z, Bina M. Simple miniaturized gel system for DNA sequence analysis. Nucleic Acids Research. 26: 452-5. PMID 9421499 DOI: 10.1093/Nar/26.2.452  0.96
1998 Choe W, Ersoy OK, Bina M. Detection of rare events by neural networks Intelligent Engineering Systems Through Artificial Neural Networks. 1998: 5-10.  0.96
1997 Crowley EM, Roeder K, Bina M. A statistical model for locating regulatory regions in genomic DNA. Journal of Molecular Biology. 268: 8-14. PMID 9149136 DOI: 10.1006/Jmbi.1997.0965  0.96
1996 Tesmer VM, Bina M. Regulation of HIV-1 gene expression by NF-IL6. Journal of Molecular Biology. 262: 327-35. PMID 8844998 DOI: 10.1006/Jmbi.1996.0516  0.96
1996 Zhang Y, Flejter WL, Barcroft CL, Rivière M, Szpirer J, Szpirer C, Bina M. Identification and assignment of a new gene (D20S756) to human chromosome 20p13. Cytogenetics and Cell Genetics. 73: 315-6. PMID 8751385 DOI: 10.1159/000134365  0.96
1995 Zhang Y, Flejter WL, Barcroft CL, Rivière M, Szpirer J, Szpirer C, Bina M. Localization of the human HTF4 transcription factors 4 gene (TCF12) to chromosome 15q21. Cytogenetics and Cell Genetics. 68: 235-8. PMID 7842744 DOI: 10.1159/000133921  0.96
1994 Bina M. Periodicity of dinucleotides in nucleosomes derived from simian virus 40 chromatin. Journal of Molecular Biology. 235: 198-208. PMID 8289241 DOI: 10.1016/S0022-2836(05)80026-9  0.96
1994 Doyle K, Zhang Y, Baer R, Bina M. Distinguishable patterns of protein-DNA interactions involving complexes of basic helix-loop-helix proteins. The Journal of Biological Chemistry. 269: 12099-105. PMID 8163514  0.96
1993 Tesmer VM, Rajadhyaksha A, Babin J, Bina M. NF-IL6-mediated transcriptional activation of the long terminal repeat of the human immunodeficiency virus type 1. Proceedings of the National Academy of Sciences of the United States of America. 90: 7298-302. PMID 8346247 DOI: 10.1073/Pnas.90.15.7298  0.96
1992 Zhang Y, Doyle K, Bina M. Interactions of HTF4 with E-box motifs in the long terminal repeat of human immunodeficiency virus type 1. Journal of Virology. 66: 5631-4. PMID 1501295 DOI: 10.1128/jvi.66.9.5631-5634.1992  0.96
1992 Zhang Y, Bina M. The nucleotide sequence of the human transcription factor HTF4a cDNA. Dna Sequence : the Journal of Dna Sequencing and Mapping. 2: 397-403. PMID 1446075 DOI: 10.3109/10425179209020819  0.96
1991 Zhang Y, Babin J, Feldhaus AL, Singh H, Sharp PA, Bina M. HTF4: a new human helix-loop-helix protein. Nucleic Acids Research. 19: 4555. PMID 1886779 DOI: 10.1093/Nar/19.16.4555  0.96
1991 Zhang Y, Bina M. Sequence of a HeLa cDNA provides the DNA binding domain and carboxy terminus of HE47: a human helix-loop-helix protein related to the enhancer binding factor E47. Dna Sequence : the Journal of Dna Sequencing and Mapping. 2: 197-202. PMID 1818757 DOI: 10.3109/10425179109039690  0.96
1991 Powers JH, Bina M. In vitro assembly of a positioned nucleosome near the hypersensitive region in simian virus 40 chromatin. Journal of Molecular Biology. 221: 795-803. PMID 1719211 DOI: 10.1016/0022-2836(91)80176-U  0.96
1991 Boger DL, Munk SA, Zarrinmayeh H, Ishizaki T, Haught J, Bina M. An alternative and convenient strategy for generation of substantial quantities of singly 5′-32p-end-labeled double-stranded DNA for binding studies: Development of a protocol for examination of functional features of (+)-CC-1065 and the duocarmycins that contribute to their sequence-selective DNA alkylation properties Tetrahedron. 47: 2661-2682. DOI: 10.1016/S0040-4020(01)81798-1  0.96
1990 Ambrose C, Bina M. Strategy for statistical-mapping of potential regulatory regions in the human genome. Journal of Molecular Biology. 216: 485-90. PMID 2175359 DOI: 10.1016/0022-2836(90)90372-S  0.96
1990 Ambrose C, Lowman H, Rajadhyaksha A, Blasquez V, Bina M. Location of nucleosomes in simian virus 40 chromatin. Journal of Molecular Biology. 214: 875-84. PMID 2167381 DOI: 10.1016/0022-2836(90)90342-J  0.96
1990 Lowman HB, Bina M. Temperature-mediated regulation and downstream inducible selection for controlling gene expression from the bacteriophage lambda pL promoter. Gene. 96: 133-6. PMID 2148296 DOI: 10.1016/0378-1119(90)90353-S  0.96
1990 Lowman H, Bina M. Correlation between dinucleotide periodicities and nucleosome positioning on mouse satellite DNA. Biopolymers. 30: 861-76. PMID 2092816 DOI: 10.1002/Bip.360300902  0.96
1989 Mahnken RE, Bina M, Deibel RM, Luebke K, Morrison H. Photochemically induced binding of Rh(phen)2Cl2+ to DNA. Photochemistry and Photobiology. 49: 519-22. PMID 2727090 DOI: 10.1111/J.1751-1097.1989.Tb09204.X  0.96
1989 Ambrose C, Rajadhyaksha A, Lowman H, Bina M. Locations of nucleosomes on the regulatory region of simian virus 40 chromatin. Journal of Molecular Biology. 210: 255-63. PMID 2557453 DOI: 10.1016/0022-2836(89)90328-8  0.96
1989 Baker TS, Drak J, Bina M. The capsid of small papova viruses contains 72 pentameric capsomeres: direct evidence from cryo-electron-microscopy of simian virus 40. Biophysical Journal. 55: 243-53. PMID 2540847 DOI: 10.1016/S0006-3495(89)82799-7  0.96
1988 Lowman HB, Behm M, Brown S, Bina M. High-level expression of the simian virus 40 genes LP1, VP1 and VP2 as fusion proteins in Escherichia coli. Gene. 68: 23-33. PMID 2851492 DOI: 10.1016/0378-1119(88)90595-1  0.96
1988 Behm M, Lowman H, Ng SC, Bina M. Analysis of temperature-sensitive mutations in the simian virus 40 gene encoding virion protein 1. Proceedings of the National Academy of Sciences of the United States of America. 85: 9421-5. PMID 2849104 DOI: 10.1073/Pnas.85.24.9421  0.96
1988 Baker TS, Drak J, Bina M. Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core. Proceedings of the National Academy of Sciences of the United States of America. 85: 422-6. PMID 2829185 DOI: 10.1073/Pnas.85.2.422  0.96
1987 Ambrose C, McLaughlin R, Bina M. The flexibility and topology of simian virus 40 DNA in minichromosomes. Nucleic Acids Research. 15: 3703-21. PMID 3035500 DOI: 10.1093/Nar/15.9.3703  0.96
1986 Blasquez V, Stein A, Ambrose C, Bina M. Simian virus 40 protein VP1 is involved in spacing nucleosomes in minichromosomes. Journal of Molecular Biology. 191: 97-106. PMID 3025457 DOI: 10.1016/0022-2836(86)90425-0  0.96
1986 Ambrose C, Blasquez V, Bina M. A block in initiation of simian virus 40 assembly results in the accumulation of minichromosomes containing an exposed regulatory region. Proceedings of the National Academy of Sciences of the United States of America. 83: 3287-91. PMID 3010287 DOI: 10.1073/Pnas.83.10.3287  0.96
1985 Ng SC, Behm M, Bina M. DNA sequence alterations responsible for the synthesis of thermosensitive VP1 in temperature-sensitive BC mutants of simian virus 40. Journal of Virology. 54: 646-9. PMID 2985830 DOI: 10.1128/jvi.54.2.646-649.1985  0.96
1985 Blasquez V, Bina M. Salt-stable association of simian virus 40 capsid with simian virus 40 DNA. Febs Letters. 181: 64-8. PMID 2982654 DOI: 10.1016/0014-5793(85)81114-5  0.96
1985 Ng SC, Mertz JE, Sanden-Will S, Bina M. Simian virus 40 maturation in cells harboring mutants deleted in the agnogene. The Journal of Biological Chemistry. 260: 1127-32. PMID 2981833  0.96
1984 O'Connor T, Bina M. The structure of triple helical poly(U).poly(A).poly(U) studied by Raman spectroscopy. Journal of Biomolecular Structure & Dynamics. 2: 615-25. PMID 6400914 DOI: 10.1080/07391102.1984.10507595  0.96
1984 Ng SC, Bina M. Temperature-sensitive BC mutants of simian virus 40: block in virion assembly and accumulation of capsid-chromatin complexes. Journal of Virology. 50: 471-7. PMID 6323747 DOI: 10.1128/jvi.50.2.471-477.1984  0.96
1984 Stein A, Bina M. A model chromatin assembly system. Factors affecting nucleosome spacing. Journal of Molecular Biology. 178: 341-63. PMID 6208368 DOI: 10.1016/0022-2836(84)90148-7  0.96
1984 Ambrose C, Blasquez V, Behm M, Bina M. The effect of a block in virus assembly on the simian virus 40 chromatin organization Federation Proceedings. 43: no. 3564.  0.96
1984 Ng SC, Barkan A, Mertz J, Bina M. Involvement of the simian virus 40 agnoprotein in virion assembly Federation Proceedings. 43: no. 3568.  0.96
1983 Blasquez V, Beecher S, Bina M. Simian virus 40 morphogenetic pathway. An analysis of assembly-defective tsB201 DNA protein complexes. The Journal of Biological Chemistry. 258: 8477-84. PMID 6305987  0.96
1983 Bina M, Blasquez V, Ng SC, Beecher S. SV40 morphogenesis. Cold Spring Harbor Symposia On Quantitative Biology. 47: 565-9. PMID 6305569 DOI: 10.1101/sqb.1983.047.01.066  0.96
1983 Bina M, Ng SC, Blasquez V. Simian virus 40 chromatin interaction with the capsid proteins. Journal of Biomolecular Structure & Dynamics. 1: 689-704. PMID 6101085 DOI: 10.1080/07391102.1983.10507475  0.96
1982 O'Connor T, Bina M, McMillin DR, Haley MR, Tobias RS. Heavy metal-nucleotide interactions. 15. Reactions of calf thymus DNA with the electrophiles methylmercury(II) nitrate, cis-dichlorodiammineplatinum(II), and trans-dichlorodiammineplatinum(II) studied using Raman difference spectroscopy. Evidence for the formation of C-DNA upon metalation. Biophysical Chemistry. 15: 223-34. PMID 7201858 DOI: 10.1016/0301-4622(82)80006-9  0.96
1982 O'Connor T, Mansy S, Bina M, McMillin DR, Bruck MA, Tobias RS. The pH-dependent structure of calf thymus DNA studied by Raman spectroscopy. Biophysical Chemistry. 15: 53-64. PMID 7074208 DOI: 10.1016/0301-4622(82)87016-6  0.96
1982 Bina M, Beecher S, Blasquez V. Stability and components of mature simian virus 40. Biochemistry. 21: 3057-63. PMID 6285958 DOI: 10.1021/Bi00256A004  0.96
1981 Ng SC, Bina M. Disulfide bonds protect the encapsidated chromosomes of Simian virus 40. Febs Letters. 130: 47-9. PMID 6269889 DOI: 10.1016/0014-5793(81)80662-X  0.96
1981 Bina M, Radonovich MF, Roe BA. Fractionation of simian virus 40 DNA fragments by RPC-5 column chromatography. Analytical Biochemistry. 114: 105-11. PMID 6269462 DOI: 10.1016/0003-2697(81)90459-0  0.96
1980 Bina M, Sturtevant JM, Stein A. Stability of DNA in nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 77: 4044-7. PMID 6933452 DOI: 10.1073/Pnas.77.7.4044  0.96
1980 Bina M, Feldmann RJ, Deeley RG. Could poly(A) align the splicing sites of messenger RNA precursors? Proceedings of the National Academy of Sciences of the United States of America. 77: 1278-82. PMID 6929484 DOI: 10.1073/Pnas.77.3.1278  0.96
1979 Stein A, Whitlock JP, Bina M. Acidic polypeptides can assemble both histones and chromatin in vitro at physiological ionic strength. Proceedings of the National Academy of Sciences of the United States of America. 76: 5000-4. PMID 291918 DOI: 10.1073/Pnas.76.10.5000  0.96
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