Minou Bina - Publications

Chemistry Purdue University, West Lafayette, IN, United States 
transcriptional control elements in human chromosomes

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bina M. Discovering candidate imprinted genes and imprinting control regions in the human genome. Bmc Genomics. 21: 378. PMID 32475352 DOI: 10.1186/S12864-020-6688-8  0.386
2017 Bina M, Wyss P, Song XC. Datasets on the genomic positions of the MLL1 morphemes, the ZFP57 binding site, and ZFBS-Morph overlaps in the build mm9 of the mouse genome. Data in Brief. 13: 202-207. PMID 28616452 DOI: 10.1016/J.Dib.2017.05.050  0.44
2017 Bina M. Imprinted control regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 morphemes. Genomics. PMID 28476430 DOI: 10.1016/J.Ygeno.2017.04.008  0.43
2015 Bina M, Wyss P. Impact of the MLL1 morphemes on codon utilization and preservation in CpG Islands. Biopolymers. 103: 480-90. PMID 25991579 DOI: 10.1002/Bip.22681  0.431
2013 Bina M, Wyss P, Novorolsky E, Zulkelfi N, Xue J, Price R, Fay M, Gutmann Z, Fogler B, Wang D. Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin. Bmc Genomics. 14: 927. PMID 24373511 DOI: 10.1186/1471-2164-14-927  0.476
2009 Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Discovering sequences with potential regulatory characteristics. Genomics. 93: 314-22. PMID 19084590 DOI: 10.1016/J.Ygeno.2008.11.008  0.441
2008 Bina M. The genome browser at UCSC for locating genes, and much more! Molecular Biotechnology. 38: 269-75. PMID 18058261 DOI: 10.1007/S12033-007-9019-2  0.399
2006 Wyss P, Lazarus SA, Bina M. A program toolkit for the analysis of regulatory regions of genes. Methods in Molecular Biology (Clifton, N.J.). 338: 135-52. PMID 16888356 DOI: 10.1385/1-59745-097-9:135  0.441
2006 Bina M, Wyss P, Shah SR. A database of 9-mers from promoter regions of human protein-coding genes. Methods in Molecular Biology (Clifton, N.J.). 338: 129-34. PMID 16888355 DOI: 10.1385/1-59745-097-9:129  0.414
2006 Bina M. Identification and mapping of paralogous genes on a known genomic DNA sequence. Methods in Molecular Biology (Clifton, N.J.). 338: 21-9. PMID 16888348 DOI: 10.1385/1-59745-097-9:21  0.375
2006 Bina M. Use of genome browsers to locate your favorite genes. Methods in Molecular Biology (Clifton, N.J.). 338: 1-7. PMID 16888346 DOI: 10.1385/1-59745-097-9:1  0.335
2006 Pares-Matos EI, Milligan JS, Bina M. Exploring transcription factor binding properties of several non-coding DNA sequence elements in the human NF-IL6 gene. Journal of Molecular Biology. 357: 732-47. PMID 16458921 DOI: 10.1016/J.Jmb.2005.12.071  0.781
2004 Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84: 929-40. PMID 15533710 DOI: 10.1016/J.Ygeno.2004.08.013  0.753
2002 Gan TI, Rowen L, Nesbitt R, Roe BA, Wu H, Hu P, Yao Z, Kim UJ, O'Sickey T, Bina M. Genomic organization of human TCF12 gene and spliced mRNA variants producing isoforms of transcription factor HTF4. Cytogenetic and Genome Research. 98: 245-8. PMID 12826747 DOI: 10.1159/000071042  0.584
2002 Bina M, Young J, Pares-Matos EI. A conceptual scale for correlating cytogenetic and physical maps. Cytogenetic and Genome Research. 97: 136-9. PMID 12438753 DOI: 10.1159/000064061  0.698
2002 Buckner AE, Tesmer VM, Bina M. Regulation of HIV-1 transcription by NF-IL6 in activated Jurkat T cells. Virus Research. 89: 53-63. PMID 12367750 DOI: 10.1016/S0168-1702(02)00110-7  0.66
2002 Yang Y, Tesmer VM, Bina M. Regulation of HIV-1 transcription in activated monocyte macrophages. Virology. 299: 256-265. PMID 12202228 DOI: 10.1006/Viro.2001.1530  0.464
2002 Yang Y, Pares-Matos EI, Tesmer VM, Dai C, Ashworth S, Huai J, Bina M. Organization of the promoter region of the human NF-IL6 gene. Biochimica Et Biophysica Acta. 1577: 102-8. PMID 12151100 DOI: 10.1016/S0167-4781(02)00401-3  0.777
2001 Bina M, Crowely E. Sequence patterns defining the 5' boundary of human genes. Biopolymers. 59: 347-55. PMID 11514938 DOI: 10.1002/1097-0282(20011015)59:5<347::Aid-Bip1032>3.0.Co;2-6  0.443
2000 Bina M, Demmon S, Pares-Matos EI. Syndromes associated with Homo sapiens pol II regulatory genes. Progress in Nucleic Acid Research and Molecular Biology. 64: 171-219. PMID 10697410 DOI: 10.1016/S0079-6603(00)64005-9  0.749
1999 Stein A, Bina M. A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment. Nucleic Acids Research. 27: 848-53. PMID 9889282 DOI: 10.1093/Nar/27.3.848  0.564
1998 Stein A, Hill SA, Cheng Z, Bina M. Simple miniaturized gel system for DNA sequence analysis. Nucleic Acids Research. 26: 452-5. PMID 9421499 DOI: 10.1093/Nar/26.2.452  0.517
1997 Crowley EM, Roeder K, Bina M. A statistical model for locating regulatory regions in genomic DNA. Journal of Molecular Biology. 268: 8-14. PMID 9149136 DOI: 10.1006/Jmbi.1997.0965  0.456
1996 Tesmer VM, Bina M. Regulation of HIV-1 gene expression by NF-IL6. Journal of Molecular Biology. 262: 327-35. PMID 8844998 DOI: 10.1006/Jmbi.1996.0516  0.456
1995 Zhang Y, Flejter WL, Barcroft CL, Rivière M, Szpirer J, Szpirer C, Bina M. Localization of the human HTF4 transcription factors 4 gene (TCF12) to chromosome 15q21. Cytogenetics and Cell Genetics. 68: 235-8. PMID 7842744 DOI: 10.1159/000133921  0.393
1994 Bina M. Periodicity of dinucleotides in nucleosomes derived from simian virus 40 chromatin. Journal of Molecular Biology. 235: 198-208. PMID 8289241 DOI: 10.1016/S0022-2836(05)80026-9  0.377
1993 Tesmer VM, Rajadhyaksha A, Babin J, Bina M. NF-IL6-mediated transcriptional activation of the long terminal repeat of the human immunodeficiency virus type 1. Proceedings of the National Academy of Sciences of the United States of America. 90: 7298-302. PMID 8346247 DOI: 10.1073/Pnas.90.15.7298  0.469
1992 Zhang Y, Bina M. The nucleotide sequence of the human transcription factor HTF4a cDNA. Dna Sequence : the Journal of Dna Sequencing and Mapping. 2: 397-403. PMID 1446075 DOI: 10.3109/10425179209020819  0.396
1991 Zhang Y, Bina M. Sequence of a HeLa cDNA provides the DNA binding domain and carboxy terminus of HE47: a human helix-loop-helix protein related to the enhancer binding factor E47. Dna Sequence : the Journal of Dna Sequencing and Mapping. 2: 197-202. PMID 1818757 DOI: 10.3109/10425179109039690  0.427
1991 Powers JH, Bina M. In vitro assembly of a positioned nucleosome near the hypersensitive region in simian virus 40 chromatin. Journal of Molecular Biology. 221: 795-803. PMID 1719211 DOI: 10.1016/0022-2836(91)80176-U  0.412
1991 Boger DL, Munk SA, Zarrinmayeh H, Ishizaki T, Haught J, Bina M. An alternative and convenient strategy for generation of substantial quantities of singly 5′-32p-end-labeled double-stranded DNA for binding studies: Development of a protocol for examination of functional features of (+)-CC-1065 and the duocarmycins that contribute to their sequence-selective DNA alkylation properties Tetrahedron. 47: 2661-2682. DOI: 10.1016/S0040-4020(01)81798-1  0.327
1990 Ambrose C, Bina M. Strategy for statistical-mapping of potential regulatory regions in the human genome. Journal of Molecular Biology. 216: 485-90. PMID 2175359 DOI: 10.1016/0022-2836(90)90372-S  0.411
1990 Ambrose C, Lowman H, Rajadhyaksha A, Blasquez V, Bina M. Location of nucleosomes in simian virus 40 chromatin. Journal of Molecular Biology. 214: 875-84. PMID 2167381 DOI: 10.1016/0022-2836(90)90342-J  0.432
1990 Lowman HB, Bina M. Temperature-mediated regulation and downstream inducible selection for controlling gene expression from the bacteriophage lambda pL promoter. Gene. 96: 133-6. PMID 2148296 DOI: 10.1016/0378-1119(90)90353-S  0.347
1990 Lowman H, Bina M. Correlation between dinucleotide periodicities and nucleosome positioning on mouse satellite DNA. Biopolymers. 30: 861-76. PMID 2092816 DOI: 10.1002/Bip.360300902  0.361
1989 Ambrose C, Rajadhyaksha A, Lowman H, Bina M. Locations of nucleosomes on the regulatory region of simian virus 40 chromatin. Journal of Molecular Biology. 210: 255-63. PMID 2557453 DOI: 10.1016/0022-2836(89)90328-8  0.453
1988 Lowman HB, Behm M, Brown S, Bina M. High-level expression of the simian virus 40 genes LP1, VP1 and VP2 as fusion proteins in Escherichia coli. Gene. 68: 23-33. PMID 2851492 DOI: 10.1016/0378-1119(88)90595-1  0.323
1987 Ambrose C, McLaughlin R, Bina M. The flexibility and topology of simian virus 40 DNA in minichromosomes. Nucleic Acids Research. 15: 3703-21. PMID 3035500 DOI: 10.1093/Nar/15.9.3703  0.349
1986 Blasquez V, Stein A, Ambrose C, Bina M. Simian virus 40 protein VP1 is involved in spacing nucleosomes in minichromosomes. Journal of Molecular Biology. 191: 97-106. PMID 3025457 DOI: 10.1016/0022-2836(86)90425-0  0.553
1986 Ambrose C, Blasquez V, Bina M. A block in initiation of simian virus 40 assembly results in the accumulation of minichromosomes containing an exposed regulatory region. Proceedings of the National Academy of Sciences of the United States of America. 83: 3287-91. PMID 3010287 DOI: 10.1073/Pnas.83.10.3287  0.361
1984 Stein A, Bina M. A model chromatin assembly system. Factors affecting nucleosome spacing. Journal of Molecular Biology. 178: 341-63. PMID 6208368 DOI: 10.1016/0022-2836(84)90148-7  0.52
1983 Bina M, Ng SC, Blasquez V. Simian virus 40 chromatin interaction with the capsid proteins. Journal of Biomolecular Structure & Dynamics. 1: 689-704. PMID 6101085 DOI: 10.1080/07391102.1983.10507475  0.328
1981 Bina M, Radonovich MF, Roe BA. Fractionation of simian virus 40 DNA fragments by RPC-5 column chromatography. Analytical Biochemistry. 114: 105-11. PMID 6269462 DOI: 10.1016/0003-2697(81)90459-0  0.3
1980 Bina M, Sturtevant JM, Stein A. Stability of DNA in nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 77: 4044-7. PMID 6933452 DOI: 10.1073/Pnas.77.7.4044  0.5
1979 Stein A, Whitlock JP, Bina M. Acidic polypeptides can assemble both histones and chromatin in vitro at physiological ionic strength. Proceedings of the National Academy of Sciences of the United States of America. 76: 5000-4. PMID 291918 DOI: 10.1073/Pnas.76.10.5000  0.495
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