Ishita Mukerji - Publications

Affiliations: 
Wesleyan University, Middletown, CT, United States 
Area:
General Biophysics, Molecular Biology

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li Y, Lombardo Z, Joshi M, Hingorani MM, Mukerji I. Mismatch Recognition by Msh2-Msh6: Role of Structure and Dynamics. International Journal of Molecular Sciences. 20. PMID 31480444 DOI: 10.3390/ijms20174271  0.4
2018 Lahiri S, Li Y, Hingorani MM, Mukerji I. MutSγ-Induced DNA Conformational Changes Provide Insights into its Role in Meiotic Recombination. Biophysical Journal. PMID 30467025 DOI: 10.1016/j.bpj.2018.10.029  0.48
2017 Zhang Q, Lahiri S, Banerjee T, Sun Z, Oliver D, Mukerji I. Alignment of the protein substrate hairpin along the SecA two-helix finger primes protein transport in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. PMID 28798063 DOI: 10.1073/pnas.1702201114  0.48
2016 Aphale AN, Mahakalkar K, Macwan IG, Mukerji I, Cox PJ, Mahapatra M, Singh P, Ajayan PM, Patra PK. Fabrication and Experimental Analysis of Axially Oriented Nanofibers. Journal of Nanoscience and Nanotechnology. 16: 2668-76. PMID 27455687 DOI: 10.1166/jnn.2016.10827  1
2016 Macwan IG, Zhao Z, Sobh OT, Mukerji I, Dharmadhikari B, Patra PK. Residue Specific and Chirality Dependent Interactions between Carbon Nanotubes and Flagellin. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 541-548. PMID 27295637 DOI: 10.1109/TCBB.2015.2459696  1
2016 Litke JL, Li Y, Nocka LM, Mukerji I. Probing the Ion Binding Site in a DNA Holliday Junction Using Förster Resonance Energy Transfer (FRET). International Journal of Molecular Sciences. 17. PMID 26978349 DOI: 10.3390/ijms17030366  1
2016 Wang W, Nocka LM, Wiemann BZ, Hinckley DM, Mukerji I, Starr FW. Holliday Junction Thermodynamics and Structure: Coarse-Grained Simulations and Experiments. Scientific Reports. 6: 22863. PMID 26971574 DOI: 10.1038/srep22863  1
2016 Zhang Q, Li Y, Olson R, Mukerji I, Oliver DB. Conserved SecA Signal Peptide-binding Site Revealed by Engineered Protein Chimeras and Förster Resonance Energy Transfer. Biochemistry. PMID 26854513 DOI: 10.1021/acs.biochem.5b01115  1
2015 Lahiri S, Hingorani M, Mukerji I. 116 Binding dynamics of yeast MutS homologs Msh4-Msh5 with the Holliday junction. Journal of Biomolecular Structure & Dynamics. 33: 73. PMID 26103328 DOI: 10.1080/07391102.2015.1032749  0.48
2013 Auclair SM, Oliver DB, Mukerji I. Defining the solution state dimer structure of Escherichia coli SecA using Förster resonance energy transfer. Biochemistry. 52: 2388-401. PMID 23484952 DOI: 10.1021/bi301217t  1
2012 Husain B, Mukerji I, Cole JL. Analysis of high-affinity binding of protein kinase R to double-stranded RNA. Biochemistry. 51: 8764-70. PMID 23062027 DOI: 10.1021/bi301226h  1
2012 Moreno A, Knee J, Mukerji I. Applying 6-methylisoxanthopterin-enhanced fluorescence to examine protein-DNA interactions in the picomolar range. Biochemistry. 51: 6847-59. PMID 22849374 DOI: 10.1021/bi300466d  1
2012 Wheatley EG, Pieniazek SN, Mukerji I, Beveridge DL. Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)â‚„. Biophysical Journal. 102: 552-60. PMID 22325278 DOI: 10.1016/j.bpj.2011.11.4023  1
2012 Wheatley EG, Pieniazek SN, Vitoc I, Mukerji I, Beveridge DL. Chapter 5: Molecular dynamics structure prediction of a novel protein-DNA complex: Two HU proteins with a DNA four-way junction Rsc Biomolecular Sciences. 111-128.  1
2012 Bhattacharya A, Cheng J, Bhosale S, Aphale A, MacWan I, Patra PK, Mukerji I. UV resonance Raman characterization of diphenylalanine-graphene nanotubes Spectroscopy (Santa Monica). 27.  1
2011 Ikuta T, Thatte HS, Tang JX, Mukerji I, Knee K, Bridges KR, Wang S, Montero-Huerta P, Joshi RM, Head CA. Nitric oxide reduces sickle hemoglobin polymerization: potential role of nitric oxide-induced charge alteration in depolymerization. Archives of Biochemistry and Biophysics. 510: 53-61. PMID 21457702 DOI: 10.1016/j.abb.2011.03.013  1
2011 Vitoc CI, Mukerji I. HU binding to a DNA four-way junction probed by Förster resonance energy transfer. Biochemistry. 50: 1432-41. PMID 21230005 DOI: 10.1021/bi1007589  1
2010 Auclair SM, Moses JP, Musial-Siwek M, Kendall DA, Oliver DB, Mukerji I. Mapping of the signal peptide-binding domain of Escherichia coli SecA using Förster resonance energy transfer. Biochemistry. 49: 782-92. PMID 20025247 DOI: 10.1021/bi901446r  1
2010 Wang Y, Petty S, Trojanowski A, Knee K, Goulet D, Mukerji I, King J. Formation of amyloid fibrils in vitro from partially unfolded intermediates of human gammaC-crystallin. Investigative Ophthalmology & Visual Science. 51: 672-8. PMID 19684009 DOI: 10.1167/iovs.09-3987  1
2009 Knee KM, Mukerji I. Real time monitoring of sickle cell hemoglobin fiber formation by UV resonance Raman spectroscopy. Biochemistry. 48: 9903-11. PMID 19778007 DOI: 10.1021/bi901352m  1
2009 Sarkar T, Petrov AS, Vitko JR, Santai CT, Harvey SC, Mukerji I, Hud NV. Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin. Biochemistry. 48: 667-75. PMID 19132923 DOI: 10.1021/bi8019965  1
2008 Knee KM, Dixit SB, Aitken CE, Ponomarev S, Beveridge DL, Mukerji I. Spectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA. Biophysical Journal. 95: 257-72. PMID 18326653 DOI: 10.1529/biophysj.107.117606  1
2007 Vitko J, Rujan I, Androga L, Mukerji I, Bolton PH. Molecular beacon-equilibrium cyclization detection of DNA-protein complexes. Biophysical Journal. 93: 3210-7. PMID 17631534 DOI: 10.1529/biophysj.106.097642  1
2007 Knee KM, Roden CK, Flory MR, Mukerji I. The role of beta93 Cys in the inhibition of Hb S fiber formation. Biophysical Chemistry. 127: 181-93. PMID 17350155 DOI: 10.1016/j.bpc.2007.02.002  1
2007 Sarkar T, Vitoc I, Mukerji I, Hud NV. Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines. Nucleic Acids Research. 35: 951-61. PMID 17259223 DOI: 10.1093/nar/gkl1093  1
2006 Augustyn KE, Wojtuszewski K, Hawkins ME, Knutson JR, Mukerji I. Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue. Biochemistry. 45: 5039-47. PMID 16605272 DOI: 10.1021/bi0518343  1
2004 Wojtuszewski K, Mukerji I. The HU-DNA binding interaction probed with UV resonance Raman spectroscopy: structural elements of specificity. Protein Science : a Publication of the Protein Society. 13: 2416-28. PMID 15322284 DOI: 10.1110/ps.04730204  1
2004 Arthanari H, Wojtuszewski K, Mukerji I, Bolton PH. Effects of HU binding on the equilibrium cyclization of mismatched, curved, and normal DNA. Biophysical Journal. 86: 1625-31. PMID 14990489 DOI: 10.1016/S0006-3495(04)74230-7  1
2003 Ding H, Mukerji I, Oliver D. Nucleotide and phospholipid-dependent control of PPXD and C-domain association for SecA ATPase. Biochemistry. 42: 13468-75. PMID 14621992 DOI: 10.1021/bi035099b  1
2003 Ding H, Hunt JF, Mukerji I, Oliver D. Bacillus subtilis SecA ATPase exists as an antiparallel dimer in solution. Biochemistry. 42: 8729-38. PMID 12873133 DOI: 10.1021/bi0342057  1
2003 Wojtuszewski K, Mukerji I. HU binding to bent DNA: a fluorescence resonance energy transfer and anisotropy study. Biochemistry. 42: 3096-104. PMID 12627977 DOI: 10.1021/bi0264014  1
2002 Mukerji I, Williams AP. UV resonance Raman and circular dichroism studies of a DNA duplex containing an A(3)T(3) tract: evidence for a premelting transition and three-centered H-bonds. Biochemistry. 41: 69-77. PMID 11772004 DOI: 10.1021/bi010918i  1
2001 Wojtuszewski K, Hawkins ME, Cole JL, Mukerji I. HU binding to DNA: evidence for multiple complex formation and DNA bending. Biochemistry. 40: 2588-98. PMID 11327882 DOI: 10.1021/bi002382r  1
2001 Ding H, Mukerji I, Oliver D. Lipid and signal peptide-induced conformational changes within the C-domain of Escherichia coli SecA protein Biochemistry. 40: 1835-1843. PMID 11327846 DOI: 10.1021/bi002058w  1
2000 Sokolov L, Wojtuszewski K, Tsukroff E, Mukerji I. Nucleic acid structure investigated by UV resonance raman spectroscopy: Protonation effects and A-tract structure Journal of Biomolecular Structure and Dynamics. 17: 327-334. PMID 22607441 DOI: 10.1080/07391102.2000.10506638  1
2000 Yohe ME, Sheffield KM, Mukerji I. Solubility of fluoromethemoglobin S: Effect of phosphate and temperature on polymerization Biophysical Journal. 78: 3218-3226. PMID 10827998  1
2000 Schmidt M, Ding H, Ramamurthy V, Mukerji I, Oliver D. Nucleotide binding activity of SecA homodimer is conformationally regulated by temperature and altered by prlD and azi mutations Journal of Biological Chemistry. 275: 15440-15448. PMID 10747939 DOI: 10.1074/jbc.M000605200  1
2000 Sokolov L, Mukerji I. Structure of sickle cell hemoglobin fibers probed with UV resonance Raman spectroscopy Journal of Physical Chemistry B. 104: 10835-10843.  1
1999 Hu X, Rodgers KR, Mukerji I, Spiro TG. New light on allostery: dynamic resonance Raman spectroscopy of hemoglobin kempsey. Biochemistry. 38: 3462-7. PMID 10090732 DOI: 10.1021/bi982513c  1
1998 Mukerji I, Sokolov L, Mihailescu MR. A UV resonance Raman investigation of poly(rI): Evidence for cation- dependent structural perturbations Biopolymers. 46: 475-487. DOI: 10.1002/(SICI)1097-0282(199812)46:7<475::AID-BIP5>3.0.CO;2-U  1
1998 Sokolov L, Mukerji I. Conformational changes in FmetHbS probed with UV resonance Raman and fluorescence spectroscopic methods Journal of Physical Chemistry B. 102: 8314-8319.  1
1997 Chan SS, Austin RH, Mukerji I, Spiro TG. Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA. Biophysical Journal. 72: 1512-20. PMID 9083657 DOI: 10.1016/S0006-3495(97)78799-X  1
1996 Mukerji I, Shiber MC, Fresco JR, Spiro TG. A UV resonance Raman study of hairpin dimer helices of d(A-G)10 at neutral pH containing intercalated dA residues and alternating dG tetrads. Nucleic Acids Research. 24: 5013-20. PMID 9016674 DOI: 10.1093/nar/24.24.5013  1
1996 Jordan T, Mukerji I, Wang Y, Spiro TG. UV resonance Raman spectroscopy and hydrogen bonding of the proline peptide bond 1 Journal of Molecular Structure. 379: 51-64.  1
1995 Latimer MJ, DeRose VJ, Mukerji I, Yachandra VK, Sauer K, Klein MP. Evidence for the proximity of calcium to the manganese cluster of photosystem II: determination by X-ray absorption spectroscopy. Biochemistry. 34: 10898-909. PMID 7662671  1
1995 Mukerji I, Shiber MC, Spiro TG, Fresco JR. A UV resonance Raman study of d(A(+)-G)10, a single-stranded helix without stacked or paired bases. Biochemistry. 34: 14300-3. PMID 7578033 DOI: 10.1021/bi00044a006  1
1995 Jayaraman V, Rodgers KR, Mukerji I, Spiro TG. Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates. Science (New York, N.Y.). 269: 1843-8. PMID 7569921  1
1995 DeRose VJ, Latimer MJ, Zimmermann JL, Mukerji I, Yachandra VK, Sauer K, Klein MP. Fluoride substitution in the Mn cluster from Photosystem II: EPR and X-ray absorption spectroscopy studies Chemical Physics. 194: 443-459. DOI: 10.1016/0301-0104(95)00043-N  1
1994 Mukerji I, Andrews JC, DeRose VJ, Latimer MJ, Yachandra VK, Sauer K, Klein MP. Orientation of the oxygen-evolving manganese complex in a photosystem II membrane preparation: an X-ray absorption spectroscopy study. Biochemistry. 33: 9712-21. PMID 8068650  1
1994 Mukerji I, Spiro TG. Modeling the hemoglobin switchpoint with cyanomet valency hybrids: Raman spectroscopic probes of tertiary and quaternary structure. Biochemistry. 33: 13132-9. PMID 7947719  1
1994 DeRose VJ, Mukerji I, Latimer MJ, Yachandra VK, Sauer K, Klein MP. Comparison of the manganese oxygen-evolving complex in photosystem II of spinach and Synechococcus sp. with multinuclear manganese model compounds by X-ray absorption spectroscopy Journal of the American Chemical Society. 116: 5239-5249.  1
1993 Jayaraman V, Rodgers KR, Mukerji I, Spiro TG. R and T states of fluoromethemoglobin probed by ultraviolet resonance Raman spectroscopy. Biochemistry. 32: 4547-51. PMID 8485131  1
1993 Yachandra VK, DeRose VJ, Latimer MJ, Mukerji I, Sauer K, Klein MP. Where plants make oxygen: a structural model for the photosynthetic oxygen-evolving manganese cluster. Science (New York, N.Y.). 260: 675-9. PMID 8480177  1
1993 Yachandra VK, Derose VJ, Latimer MJ, Mukerji I, Sauer K, Klein MP. A structural model for the photosynthetic oxygen evolving manganese complex Japanese Journal of Applied Physics. 32: 523-526. DOI: 10.7567/JJAPS.32S2.523  1
1993 Mukerji I, Sauer K. Energy transfer dynamics of an isolated light harvesting complex of Photosystem I from spinach: time-resolved fluorescence measurements at 295 K and 77 K Bba - Bioenergetics. 1142: 311-320. DOI: 10.1016/0005-2728(93)90159-D  1
1987 Wayda AL, Cheng S, Mukerji I. Cyclooctatetraenide derivatives of divalent samarium Journal of Organometallic Chemistry. 330. DOI: 10.1016/S0022-328X(00)99059-4  1
1987 Brittain HG, Wayda AL, Mukerji I. Luminescence studies of tris(bis(trimethylsilyl)amido)terbium(III) and of its adduct complexes Inorganic Chemistry. 26: 2742-2746.  1
1987 Wayda AL, Mukerji I, Dye JL, Rogers RD. Divalent lanthanoid synthesis in liquid ammonia. 2. The synthesis and X-ray crystal structure of (C8H8)Yb(C5H5N) 3·1/2C5H5N Organometallics. 6: 1328-1332.  1
1986 Mukerji I, Wayda A, Dabbagh G, Bertz SH. The Alkylation of Epoxides with New Organoyttrium and Organolanthanoid Reagents Angewandte Chemie International Edition in English. 25: 760-762. DOI: 10.1002/anie.198607601  1
1986 Brittain HG, Wayda AL, Mukerji I. N(SiMe//3)//2 Journal of the Less-Common Metals. 126: 419.  1
1986 Rogers RD, Wayda AL, Mukerji I, Dye JL. DIVALENT LANTHANOID SYNTHESIS IN LIQUID AMMONIA: III. THE SYNTHESIS AND X-RAY CRYSTAL STRUCTURE OF (C//8H//8)Yb(C//5H//5N)//3 multiplied by (times) one-half C//5H//5N Journal of the Less-Common Metals. 126: 418-419.  1
1986 Wayda AL, Rogers RD, Andrews MP, Mukerji I, Bertz SH, Dabbagh G. LANTHANOID METALS IN UNUSUAL COORDINATION ENVIRONMENTS: IMPLICATIONS FOR ORGANIC, ORGANOMETALLIC AND INORGANIC CHEMISTRY. Journal of the Less-Common Metals. 126: 416.  1
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