☰

Tristan Lefebure, Ph.D. - Publications

Affiliations: 
LEHNA, UMR5023, Biology department Université Lyon 1, Université de Lyon 
Area:
Evolution, adaptation, genomics, phylogenetics, bioinformatics, ecology
Tree Info Similar researchers PubMed Report error

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Laugier F, Saclier N, Béthune K, Braun A, Konecny L, Lefébure T, Luquet E, Plénet S, Romiguier J, David P. Both nuclear and cytoplasmic polymorphisms are involved in genetic conflicts over male fertility in the gynodioecious snail Physa acuta. Evolution; International Journal of Organic Evolution. PMID 38554118 DOI: 10.1093/evolut/qpae053  0.702
2023 Saclier N, Duchemin L, Konecny-Dupré L, Grison P, Eme D, Martin C, Callou C, Lefébure T, François C, Issartel C, Lewis JJ, Stoch F, Sket B, Gottstein S, Delić T, et al. A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database. Molecular Ecology Resources. PMID 37864541 DOI: 10.1111/1755-0998.13882  0.803
2022 David P, Degletagne C, Saclier N, Jennan A, Jarne P, Plénet S, Konecny L, François C, Guéguen L, Garcia N, Lefébure T, Luquet E. Extreme mitochondrial DNA divergence underlies genetic conflict over sex determination. Current Biology : Cb. PMID 35483362 DOI: 10.1016/j.cub.2022.04.014  0.723
2022 Verdier H, Konecny-Dupre L, Marquette C, Reveron H, Tadier S, Grémillard L, Barthès A, Datry T, Bouchez A, Lefébure T. Passive sampling of environmental DNA in aquatic environments using 3D-printed hydroxyapatite samplers. Molecular Ecology Resources. PMID 35218316 DOI: 10.1111/1755-0998.13604  0.532
2020 Saclier N, Chardon P, Malard F, Konecny-Dupré L, Eme D, Bellec A, Breton V, Duret L, Lefebure T, Douady CJ. Bedrock radioactivity influences the rate and spectrum of mutation. Elife. 9. PMID 33252037 DOI: 10.7554/eLife.56830  0.782
2020 Francois CM, Simon L, Malard F, Lefébure T, Douady CJ, Mermillod‐Blondin F. Trophic selectivity in aquatic isopods increases with the availability of resources Functional Ecology. 34: 1078-1090. DOI: 10.1111/1365-2435.13530  0.755
2019 Gauthier M, Konecny-Dupré L, Nguyen A, Elbrecht V, Datry T, Douady CJ, Lefébure T. Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol. Molecular Ecology Resources. PMID 31484209 DOI: 10.1111/1755-0998.13088  0.769
2019 Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Molecular Biology and Evolution. PMID 30690454 DOI: 10.1093/molbev/msy247  0.76
2019 Malard F, Grison P, Duchemin L, Konecny‐Dupré L, Lefébure T, Saclier N, Eme D, Martin C, Callou C, Douady CJ. GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research Methods in Ecology and Evolution. 11: 159-167. DOI: 10.1111/2041-210X.13307  0.73
2018 Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods. Molecular Biology and Evolution. PMID 30247705 DOI: 10.1093/Molbev/Msy184  0.796
2018 Malard F, Grison P, Eme D, Fiser C, Flot J, Konecny-Dupré L, Lefébure T, Stoch F, Zagmajster M, Douady C. Integrating multiple species criteria and species hypotheses in subterranean biology Arpha Conference Abstracts. 1. DOI: 10.3897/aca.1.e30399  0.801
2017 Lefébure T, Morvan C, Malard F, François C, Konecny-Dupré L, Guéguen L, Weiss-Gayet M, Seguin-Orlando A, Ermini L, Der Sarkissian C, Charrier NP, Eme D, Mermillod-Blondin F, Duret L, Vieira C, et al. Less effective selection leads to larger genomes. Genome Research. PMID 28424354 DOI: 10.1101/Gr.212589.116  0.787
2016 Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T. No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes. Molecular Biology and Evolution. PMID 27401232 DOI: 10.1093/Molbev/Msw131  0.773
2016 Huguet-Tapia JC, Lefebure T, Badger JH, Guan D, Pettis GS, Stanhope MJ, Loria R. Genome content and phylogenomics reveal both ancestral and lateral evolutionary pathways in plant pathogenic Streptomyces species. Applied and Environmental Microbiology. PMID 26826232 DOI: 10.1128/Aem.03504-15  0.774
2015 Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ. Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. Plos One. 10: e0119799. PMID 25807497 DOI: 10.1371/Journal.Pone.0119799  0.792
2014 Dogan B, Suzuki H, Herlekar D, Sartor RB, Campbell BJ, Roberts CL, Stewart K, Scherl EJ, Araz Y, Bitar PP, Lefébure T, Chandler B, Schukken YH, Stanhope MJ, Simpson KW. Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation. Inflammatory Bowel Diseases. 20: 1919-32. PMID 25230163 DOI: 10.1097/Mib.0000000000000183  0.677
2014 Griebler C, Malard F, Lefébure T. Current developments in groundwater ecology--from biodiversity to ecosystem function and services. Current Opinion in Biotechnology. 27: 159-67. PMID 24590188 DOI: 10.1016/J.Copbio.2014.01.018  0.709
2014 Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Corrigendum to "Comparative characterization of the virulence gene clusters (lipooligosacharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species" [Inf. Gen. Evol. 14 (2013) 200-213] Infection, Genetics and Evolution. 21: 506-507. DOI: 10.1016/J.Meegid.2013.12.001  0.782
2013 Eme D, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ. Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology. 22: 5685-99. PMID 24102689 DOI: 10.1111/Mec.12520  0.802
2013 Capderrey C, Kaufmann B, Jean P, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ. Microsatellite development and first population size estimates for the groundwater isopod Proasellus walteri. Plos One. 8: e76213. PMID 24086709 DOI: 10.1371/Journal.Pone.0076213  0.778
2013 Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans. Plos One. 8: e61358. PMID 23613838 DOI: 10.1371/Journal.Pone.0061358  0.804
2013 Lin C, den Bakker HC, Suzuki H, Lefébure T, Ponnala L, Sun Q, Stanhope MJ, Wiedmann M, Duhamel GE. Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.). Genome Announcements. 1. PMID 23469345 DOI: 10.1128/Genomea.00215-12  0.73
2013 Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 14: 200-13. PMID 23279811 DOI: 10.1016/J.Meegid.2012.12.010  0.784
2013 Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ. Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Molecular Biology and Evolution. 30: 881-93. PMID 23228887 DOI: 10.1093/Molbev/Mss278  0.824
2013 Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Correction: Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans Plos One. 8. DOI: 10.1371/Annotation/Ffff8Cd5-B8Fa-4D3C-A993-E5169198F1E6  0.781
2012 Richards VP, Zadoks RN, Pavinski Bitar PD, Lefébure T, Lang P, Werner B, Tikofsky L, Moroni P, Stanhope MJ. Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. Bmc Microbiology. 12: 293. PMID 23244770 DOI: 10.1186/1471-2180-12-293  0.808
2012 Burne RA, Zeng L, Ahn SJ, Palmer SR, Liu Y, Lefebure T, Stanhope MJ, Nascimento MM. Progress dissecting the oral microbiome in caries and health. Advances in Dental Research. 24: 77-80. PMID 22899685 DOI: 10.1177/0022034512449462  0.712
2012 Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ. Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. Plos One. 7: e37607. PMID 22666370 DOI: 10.1371/Journal.Pone.0037607  0.807
2012 Suzuki H, Lefébure T, Bitar PP, Stanhope MJ. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. Bmc Genomics. 13: 38. PMID 22272658 DOI: 10.1186/1471-2164-13-38  0.761
2011 Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ. Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1263-75. PMID 21536150 DOI: 10.1016/J.Meegid.2011.04.019  0.804
2011 Suzuki H, Lefébure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ. Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. Genome Biology and Evolution. 3: 168-85. PMID 21282711 DOI: 10.1093/Gbe/Evr006  0.784
2010 Lefébure T, Bitar PD, Suzuki H, Stanhope MJ. Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept. Genome Biology and Evolution. 2: 646-55. PMID 20688752 DOI: 10.1093/Gbe/Evq048  0.778
2010 Lang P, Lefebure T, Wang W, Pavinski Bitar P, Meinersmann RJ, Kaya K, Stanhope MJ. Expanded multilocus sequence typing and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts. Applied and Environmental Microbiology. 76: 1913-25. PMID 20097815 DOI: 10.1128/Aem.01753-09  0.765
2009 Lefébure T, Stanhope MJ. Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter. Genome Research. 19: 1224-32. PMID 19304960 DOI: 10.1101/Gr.089250.108  0.783
2009 Lang P, Lefébure T, Wang W, Zadoks RN, Schukken Y, Stanhope MJ. Gene content differences across strains of Streptococcus uberis identified using oligonucleotide microarray comparative genomic hybridization. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 179-88. PMID 19056519 DOI: 10.1016/J.Meegid.2008.10.015  0.759
2009 Dole-Olivier MJ, Malard F, Martin D, Lefébure T, Gibert J. Relationships between environmental variables and groundwater biodiversity at the regional scale Freshwater Biology. 54: 797-813. DOI: 10.1111/J.1365-2427.2009.02184.X  0.777
2009 Trontelj P, Douady CJ, Fišer C, Gibert J, Gori?ki S, Lefébure T, Sket B, Zakšek V. A molecular test for cryptic diversity in ground water: How large are the ranges of macro-stygobionts? Freshwater Biology. 54: 727-744. DOI: 10.1111/J.1365-2427.2007.01877.X  0.821
2008 Stanhope MJ, Lefébure T, Walsh SL, Becker JA, Lang P, Pavinski Bitar PD, Miller LA, Italia MJ, Amrine-Madsen H. Positive selection in penicillin-binding proteins 1a, 2b, and 2x from Streptococcus pneumoniae and its correlation with amoxicillin resistance development. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 331-9. PMID 18394970 DOI: 10.1016/J.Meegid.2008.02.001  0.699
2008 Foulquier A, Malard F, Lefébure T, Douady CJ, Gibert J. The imprint of Quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae) Journal of Biogeography. 35: 552-564. DOI: 10.1111/J.1365-2699.2007.01795.X  0.761
2007 Stanhope MJ, Walsh SL, Becker JA, Miller LA, Lefébure T, Lang P, Bitar PD, Amrine-Madsen H. The relative frequency of intraspecific lateral gene transfer of penicillin binding proteins 1a, 2b, and 2x, in amoxicillin resistant Streptococcus pneumoniae. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 520-34. PMID 17475572 DOI: 10.1016/J.Meegid.2007.03.004  0.713
2007 Lefébure T, Stanhope MJ. Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biology. 8: R71. PMID 17475002 DOI: 10.1186/Gb-2007-8-5-R71  0.764
2007 Lefébure T, Douady CJ, Malard F, Gibert J. Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis). Molecular Phylogenetics and Evolution. 42: 676-86. PMID 17049283 DOI: 10.1016/J.Ympev.2006.08.020  0.806
2006 Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J. Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology. 15: 1797-806. PMID 16689899 DOI: 10.1111/J.1365-294X.2006.02888.X  0.813
2006 Lefébure T, Douady CJ, Gouy M, Gibert J. Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution. 40: 435-47. PMID 16647275 DOI: 10.1016/J.Ympev.2006.03.014  0.804
Show low-probability matches.