cached image

Amanda B. Hummon - Publications

Chemistry & Biochemistry University of Notre Dame, Notre Dame, IN, United States 
transcriptome and the proteome in cancer cells

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wangsa D, Braun R, Stuelten CH, Brown M, Bauer KM, Emons G, Weston LA, Hu Y, Yang HH, Vila-Casadesús M, Lee MP, Brauer P, Warner L, Upender M, Hummon AB, et al. Induced Chromosomal Aneuploidy Results in Global and Consistent Deregulation of the Transcriptome of Cancer Cells. Neoplasia (New York, N.Y.). 21: 721-729. PMID 31174021 DOI: 10.1016/j.neo.2019.04.009  0.6
2017 Zhang G, Vilim FS, Liu DD, Romanova EV, Yu K, Yuan WD, Xiao H, Hummon AB, Chen TT, Alexeeva V, Yin SY, Chen SA, Cropper EC, Sweedler JV, Weiss KR, et al. Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia. The Journal of Biological Chemistry. PMID 28924050 DOI: 10.1074/jbc.M117.795450  1
2016 LaBonia GJ, Lockwood SY, Heller AA, Spence DM, Hummon AB. Drug penetration and metabolism in 3-dimensional cell cultures treated in a 3D printed fluidic device: Assessment of irinotecan via MALDI imaging mass spectrometry. Proteomics. PMID 27198560 DOI: 10.1002/pmic.201500524  0.6
2015 Weaver EM, Hummon AB, Keithley RB. Chemometric analysis of MALDI mass spectrometric images of three-dimensional cell culture systems. Analytical Methods : Advancing Methods and Applications. 7: 7208-7219. PMID 26604989 DOI: 10.1039/C5AY00293A  0.6
2015 Ludwig KR, Sun L, Zhu G, Dovichi NJ, Hummon AB. Over 2,300 phosphorylated peptide identifications with single-shot capillary zone electrophoresis-tandem mass spectrometry in a 100 min separation. Analytical Chemistry. PMID 26399161 DOI: 10.1021/acs.analchem.5b02457  0.6
2015 Yue X, Schunter A, Hummon AB. Comparing Multistep Immobilized Metal Affinity Chromatography and Multistep TiO2 Methods for Phosphopeptide Enrichment. Analytical Chemistry. 87: 8837-44. PMID 26237447 DOI: 10.1021/acs.analchem.5b01833  0.6
2015 Feist PE, Sun L, Liu X, Dovichi NJ, Hummon AB. Bottom-up proteomic analysis of single HCT 116 colon carcinoma multicellular spheroids. Rapid Communications in Mass Spectrometry : Rcm. 29: 654-8. PMID 26212283 DOI: 10.1002/rcm.7150  0.6
2015 Liu X, Hummon AB. Mass Spectrometry Imaging of Therapeutics from Animal Models to Three-Dimensional Cell Cultures. Analytical Chemistry. PMID 26084404 DOI: 10.1021/acs.analchem.5b00419  0.6
2015 Feist P, Hummon AB. Proteomic challenges: sample preparation techniques for microgram-quantity protein analysis from biological samples. International Journal of Molecular Sciences. 16: 3537-63. PMID 25664860 DOI: 10.3390/ijms16023537  0.6
2015 Liu X, Hummon AB. Quantitative determination of irinotecan and the metabolite SN-38 by nanoflow liquid chromatography-tandem mass spectrometry in different regions of multicellular tumor spheroids. Journal of the American Society For Mass Spectrometry. 26: 577-86. PMID 25604392 DOI: 10.1007/s13361-014-1071-0  0.6
2014 Ahlf Wheatcraft DR, Liu X, Hummon AB. Sample preparation strategies for mass spectrometry imaging of 3D cell culture models. Journal of Visualized Experiments : Jove. PMID 25549242 DOI: 10.3791/52313  0.6
2014 Bauer KM, Watts TN, Buechler S, Hummon AB. Proteomic and functional investigation of the colon cancer relapse-associated genes NOX4 and ITGA3. Journal of Proteome Research. 13: 4910-8. PMID 25096929 DOI: 10.1021/pr500557n  0.6
2014 Ahlf DR, Masyuko RN, Hummon AB, Bohn PW. Correlated mass spectrometry imaging and confocal Raman microscopy for studies of three-dimensional cell culture sections. The Analyst. 139: 4578-85. PMID 25030970 DOI: 10.1039/c4an00826j  0.6
2013 Weston LA, Bauer KM, Hummon AB. Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes. Analytical Methods : Advancing Methods and Applications. 5. PMID 24288579 DOI: 10.1039/C3AY40853A  0.6
2013 Weston LA, Bauer KM, Skube SB, Hummon AB. Selective, bead-based global peptide capture using a bifunctional cross-linker. Analytical Chemistry. 85: 10675-9. PMID 24117407 DOI: 10.1021/ac401825m  0.6
2013 Weston LA, Hummon AB. Comparative LC-MS/MS analysis of optimal cutting temperature (OCT) compound removal for the study of mammalian proteomes. The Analyst. 138: 6380-4. PMID 24051509 DOI: 10.1039/c3an01121f  0.6
2013 Keithley RB, Weaver EM, Rosado AM, Metzinger MP, Hummon AB, Dovichi NJ. Single cell metabolic profiling of tumor mimics. Analytical Chemistry. 85: 8910-8. PMID 24011091 DOI: 10.1021/ac402262e  0.6
2013 Yue XS, Hummon AB. Combination of multistep IMAC enrichment with high-pH reverse phase separation for in-depth phosphoproteomic profiling. Journal of Proteome Research. 12: 4176-86. PMID 23927012 DOI: 10.1021/pr4005234  0.6
2013 Liu X, Weaver EM, Hummon AB. Evaluation of therapeutics in three-dimensional cell culture systems by MALDI imaging mass spectrometry. Analytical Chemistry. 85: 6295-302. PMID 23724927 DOI: 10.1021/ac400519c  0.6
2013 Padilla-Nash HM, McNeil NE, Yi M, Nguyen QT, Hu Y, Wangsa D, Mack DL, Hummon AB, Case C, Cardin E, Stephens R, Difilippantonio MJ, Ried T. Aneuploidy, oncogene amplification and epithelial to mesenchymal transition define spontaneous transformation of murine epithelial cells. Carcinogenesis. 34: 1929-39. PMID 23619298 DOI: 10.1093/carcin/bgt138  0.6
2013 Weaver EM, Hummon AB. Imaging mass spectrometry: from tissue sections to cell cultures. Advanced Drug Delivery Reviews. 65: 1039-55. PMID 23571020 DOI: 10.1016/j.addr.2013.03.006  0.6
2013 Camps J, Pitt JJ, Emons G, Hummon AB, Case CM, Grade M, Jones TL, Nguyen QT, Ghadimi BM, Beissbarth T, Difilippantonio MJ, Caplen NJ, Ried T. Genetic amplification of the NOTCH modulator LNX2 upregulates the WNT/β-catenin pathway in colorectal cancer. Cancer Research. 73: 2003-13. PMID 23319804 DOI: 10.1158/0008-5472.CAN-12-3159  0.6
2012 Bauer KM, Hummon AB. Effects of the miR-143/-145 microRNA cluster on the colon cancer proteome and transcriptome. Journal of Proteome Research. 11: 4744-54. PMID 22897626 DOI: 10.1021/pr300600r  0.6
2012 Bauer KM, Lambert PA, Hummon AB. Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil. Proteomics. 12: 1928-37. PMID 22623418 DOI: 10.1002/pmic.201200041  0.6
2012 Hummon AB, Pitt JJ, Camps J, Emons G, Skube SB, Huppi K, Jones TL, Beissbarth T, Kramer F, Grade M, Difilippantonio MJ, Ried T, Caplen NJ. Systems-wide RNAi analysis of CASP8AP2/FLASH shows transcriptional deregulation of the replication-dependent histone genes and extensive effects on the transcriptome of colorectal cancer cells. Molecular Cancer. 11: 1. PMID 22216762 DOI: 10.1186/1476-4598-11-1  0.6
2012 Bauer KM, Hummon AB, Buechler S. Right-side and left-side colon cancer follow different pathways to relapse. Molecular Carcinogenesis. 51: 411-21. PMID 21656576 DOI: 10.1002/mc.20804  0.6
2012 Yue XS, Hummon AB. Mass spectrometry-based phosphoproteomics in cancer research Frontiers in Biology. 7: 566-586. DOI: 10.1007/s11515-012-2022-4  0.6
2011 Li H, Hummon AB. Imaging mass spectrometry of three-dimensional cell culture systems. Analytical Chemistry. 83: 8794-801. PMID 21992577 DOI: 10.1021/ac202356g  0.6
2011 Grade M, Hummon AB, Camps J, Emons G, Spitzner M, Gaedcke J, Hoermann P, Ebner R, Becker H, Difilippantonio MJ, Ghadimi BM, Beissbarth T, Caplen NJ, Ried T. A genomic strategy for the functional validation of colorectal cancer genes identifies potential therapeutic targets. International Journal of Cancer. Journal International Du Cancer. 128: 1069-79. PMID 20473941 DOI: 10.1002/ijc.25453  0.6
2009 Camps J, Nguyen QT, Padilla-Nash HM, Knutsen T, McNeil NE, Wangsa D, Hummon AB, Grade M, Ried T, Difilippantonio MJ. Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer. Genes, Chromosomes & Cancer. 48: 1002-17. PMID 19691111 DOI: 10.1002/gcc.20699  0.6
2008 Camps J, Grade M, Nguyen QT, Hörmann P, Becker S, Hummon AB, Rodriguez V, Chandrasekharappa S, Chen Y, Difilippantonio MJ, Becker H, Ghadimi BM, Ried T. Chromosomal breakpoints in primary colon cancer cluster at sites of structural variants in the genome. Cancer Research. 68: 1284-95. PMID 18316590 DOI: 10.1158/0008-5472.CAN-07-2864  0.6
2007 Hummon AB, Lim SR, Difilippantonio MJ, Ried T. Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage. Biotechniques. 42: 467-70, 472. PMID 17489233 DOI: 10.2144/000112401  0.6
2007 Grade M, Hörmann P, Becker S, Hummon AB, Wangsa D, Varma S, Simon R, Liersch T, Becker H, Difilippantonio MJ, Ghadimi BM, Ried T. Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas. Cancer Research. 67: 41-56. PMID 17210682 DOI: 10.1158/0008-5472.CAN-06-1514  0.6
2006 . Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 443: 931-49. PMID 17073008 DOI: 10.1038/nature05260  0.6
2006 Hummon AB, Richmond TA, Verleyen P, Baggerman G, Huybrechts J, Ewing MA, Vierstraete E, Rodriguez-Zas SL, Schoofs L, Robinson GE, Sweedler JV. From the genome to the proteome: uncovering peptides in the Apis brain. Science (New York, N.Y.). 314: 647-9. PMID 17068263 DOI: 10.1126/science.1124128  1
2006 Amare A, Hummon AB, Southey BR, Zimmerman TA, Rodriguez-Zas SL, Sweedler JV. Bridging neuropeptidomics and genomics with bioinformatics: Prediction of mammalian neuropeptide prohormone processing. Journal of Proteome Research. 5: 1162-7. PMID 16674105 DOI: 10.1021/pr0504541  1
2006 Hummon AB, Amare A, Sweedler JV. Discovering new invertebrate neuropeptides using mass spectrometry. Mass Spectrometry Reviews. 25: 77-98. PMID 15937922 DOI: 10.1002/mas.20055  1
2004 Stuart JN, Hummon AB, Sweedler JV. The chemistry of thought: neurotransmitters in the brain. Analytical Chemistry. 76: 121A-128A. PMID 15101371  1
2004 Cummins SF, Nichols AE, Amare A, Hummon AB, Sweedler JV, Nagle GT. Characterization of Aplysia enticin and temptin, two novel water-borne protein pheromones that act in concert with attractin to stimulate mate attraction. The Journal of Biological Chemistry. 279: 25614-22. PMID 15054104 DOI: 10.1074/jbc.M313585200  1
2003 Hummon AB, Hummon NP, Corbin RW, Li L, Vilim FS, Weiss KR, Sweedler JV. From precursor to final peptides: a statistical sequence-based approach to predicting prohormone processing. Journal of Proteome Research. 2: 650-6. PMID 14692459  1
2003 Hummon AB, Sweedler JV, Corbin RW. Discovering new neuropeptides using single-cell mass spectrometry Trac - Trends in Analytical Chemistry. 22: 515-521. DOI: 10.1016/S0165-9936(03)00901-4  0.6
2002 Hummon AB, Kelley WP, Sweedler JV. A novel prohormone processing site in Aplysia californica: the Leu-Leu rule. Journal of Neurochemistry. 82: 1398-405. PMID 12354287  1
Show low-probability matches.