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Deborah Bell-Pedersen - Publications

Affiliations: 
Texas A & M University, College Station, TX, United States 
Area:
Microbiology Biology, Molecular Biology, Genetics
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Castillo KD, Chapa ED, Lamb TM, Gangopadhyay M, Bell-Pedersen D. Circadian clock control of tRNA synthetases in . F1000research. 11: 1556. PMID 37841830 DOI: 10.12688/f1000research.125351.2  0.446
2022 Castillo KD, Wu C, Ding Z, Lopez-Garcia OK, Rowlinson E, Sachs MS, Bell-Pedersen D. A circadian clock translational control mechanism targets specific mRNAs to cytoplasmic messenger ribonucleoprotein granules. Cell Reports. 41: 111879. PMID 36577368 DOI: 10.1016/j.celrep.2022.111879  0.368
2021 Maity AK, Lee SC, Hu L, Bell-Pedersen D, Mallick BK, Sarkar TR. Circadian Gene Selection for Time-to-event Phenotype by Integrating CNV and RNAseq Data. Chemometrics and Intelligent Laboratory Systems : An International Journal Sponsored by the Chemometrics Society. 212. PMID 35068632 DOI: 10.1016/j.chemolab.2021.104276  0.412
2021 Ding Z, Lamb TM, Boukhris A, Porter R, Bell-Pedersen D. Circadian Clock Control of Translation Initiation Factor eIF2α Activity Requires eIF2γ-Dependent Recruitment of Rhythmic PPP-1 Phosphatase in . Mbio. 12. PMID 34006661 DOI: 10.1128/mBio.00871-21  0.415
2020 Karki S, Castillo K, Ding Z, Kerr O, Lamb TM, Wu C, Sachs MS, Bell-Pedersen D. Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32355000 DOI: 10.1073/Pnas.1918459117  0.506
2019 Baek M, Virgilio S, Lamb TM, Ibarra O, Andrade JM, Gonçalves RD, Dovzhenok A, Lim S, Bell-Pedersen D, Bertolini MC, Hong CI. Circadian clock regulation of the glycogen synthase () gene by WCC is critical for rhythmic glycogen metabolism in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31048503 DOI: 10.1073/Pnas.1815360116  0.568
2018 Goldsmith CS, Kim SM, Karunarathna N, Neuendorff N, Gerard Toussaint L, Earnest DJ, Bell-Pedersen D. Inhibition of p38 MAPK activity leads to cell type-specific effects on the molecular circadian clock and time-dependent reduction of glioma cell invasiveness. Bmc Cancer. 18: 43. PMID 29316898 DOI: 10.1186/S12885-017-3896-Y  0.48
2017 Wu C, Dasgupta A, Shen L, Bell-Pedersen D, Sachs MS. The cell free protein synthesis system from the model filamentous fungus Neurospora crassa. Methods (San Diego, Calif.). PMID 29294368 DOI: 10.1016/J.Ymeth.2017.12.003  0.32
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.319
2017 Ivanov IP, Wei J, Caster SZ, Smith KM, Michel AM, Zhang Y, Firth AE, Freitag M, Dunlap JC, Bell-Pedersen D, Atkins JF, Sachs MS. Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity. Mbio. 8. PMID 28655822 DOI: 10.1128/Mbio.00844-17  0.416
2016 Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurely JM, Dunlap JC, Galagan JE, Freitag M, ... ... Bell-Pedersen D, et al. The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell-Fusion. G3 (Bethesda, Md.). PMID 27856696 DOI: 10.1534/G3.116.034298  0.575
2016 Caster SZ, Castillo K, Sachs MS, Bell-Pedersen D. Circadian clock regulation of mRNA translation through eukaryotic elongation factor eEF-2. Proceedings of the National Academy of Sciences of the United States of America. PMID 27506798 DOI: 10.1073/Pnas.1525268113  0.53
2015 Nsa IY, Karunarathna N, Liu X, Huang H, Boetteger B, Bell-Pedersen D. A novel cryptochrome-dependent oscillator in Neurospora crassa. Genetics. 199: 233-45. PMID 25361899 DOI: 10.1534/Genetics.114.169441  0.56
2014 Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, et al. Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proceedings of the National Academy of Sciences of the United States of America. 111: 16995-7002. PMID 25362047 DOI: 10.1073/Pnas.1418963111  0.602
2014 Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, ... Bell-Pedersen D, et al. Genome-wide characterization of light-regulated genes in Neurospora crassa. G3 (Bethesda, Md.). 4: 1731-45. PMID 25053707 DOI: 10.1534/G3.114.012617  0.539
2013 Goldsmith CS, Bell-Pedersen D. Diverse roles for MAPK signaling in circadian clocks. Advances in Genetics. 84: 1-39. PMID 24262095 DOI: 10.1016/B978-0-12-407703-4.00001-3  0.577
2013 Lamb TM, Vickery J, Bell-Pedersen D. Regulation of gene expression in Neurospora crassa with a copper responsive promoter. G3 (Bethesda, Md.). 3: 2273-80. PMID 24142928 DOI: 10.1534/G3.113.008821  0.438
2013 Bennett LD, Beremand P, Thomas TL, Bell-Pedersen D. Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa. Eukaryotic Cell. 12: 59-69. PMID 23125351 DOI: 10.1128/Ec.00207-12  0.595
2012 Lamb TM, Finch KE, Bell-Pedersen D. The Neurospora crassa OS MAPK pathway-activated transcription factor ASL-1 contributes to circadian rhythms in pathway responsive clock-controlled genes. Fungal Genetics and Biology : Fg & B. 49: 180-8. PMID 22240319 DOI: 10.1016/J.Fgb.2011.12.006  0.561
2011 Lamb TM, Goldsmith CS, Bennett L, Finch KE, Bell-Pedersen D. Direct transcriptional control of a p38 MAPK pathway by the circadian clock in Neurospora crassa. Plos One. 6: e27149. PMID 22087254 DOI: 10.1371/Journal.Pone.0027149  0.574
2011 Lakin-Thomas PL, Bell-Pedersen D, Brody S. The genetics of circadian rhythms in Neurospora. Advances in Genetics. 74: 55-103. PMID 21924975 DOI: 10.1016/B978-0-12-387690-4.00003-9  0.565
2010 Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF, Thomas TL, Carrington JC, Stajich JE, Bell-Pedersen D, Brunner M, et al. Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryotic Cell. 9: 1549-56. PMID 20675579 DOI: 10.1128/Ec.00154-10  0.612
2008 de Paula RM, Lamb TM, Bennett L, Bell-Pedersen D. A connection between MAPK pathways and circadian clocks. Cell Cycle (Georgetown, Tex.). 7: 2630-4. PMID 18728391 DOI: 10.4161/Cc.7.17.6516  0.542
2007 de Paula RM, Vitalini MW, Gomer RH, Bell-Pedersen D. Complexity of the Neurospora crassa circadian clock system: multiple loops and oscillators. Cold Spring Harbor Symposia On Quantitative Biology. 72: 345-51. PMID 18419292 DOI: 10.1101/Sqb.2007.72.002  0.795
2007 Vitalini MW, de Paula RM, Goldsmith CS, Jones CA, Borkovich KA, Bell-Pedersen D. Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK. Proceedings of the National Academy of Sciences of the United States of America. 104: 18223-8. PMID 17984065 DOI: 10.1073/Pnas.0704900104  0.805
2006 Vitalini MW, de Paula RM, Park WD, Bell-Pedersen D. The rhythms of life: circadian output pathways in Neurospora. Journal of Biological Rhythms. 21: 432-44. PMID 17107934 DOI: 10.1177/0748730406294396  0.815
2006 Liu Y, Bell-Pedersen D. Circadian rhythms in Neurospora crassa and other filamentous fungi. Eukaryotic Cell. 5: 1184-93. PMID 16896204 DOI: 10.1128/Ec.00133-06  0.505
2006 de Paula RM, Lewis ZA, Greene AV, Seo KS, Morgan LW, Vitalini MW, Bennett L, Gomer RH, Bell-Pedersen D. Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes. Journal of Biological Rhythms. 21: 159-68. PMID 16731655 DOI: 10.1177/0748730406288338  0.789
2005 Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, BaÅŸtürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, ... ... Bell-Pedersen D, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341  0.342
2005 Bell-Pedersen D, Cassone VM, Earnest DJ, Golden SS, Hardin PE, Thomas TL, Zoran MJ. Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nature Reviews. Genetics. 6: 544-56. PMID 15951747 DOI: 10.1038/Nrg1633  0.529
2005 Pregueiro AM, Price-Lloyd N, Bell-Pedersen D, Heintzen C, Loros JJ, Dunlap JC. Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles. Proceedings of the National Academy of Sciences of the United States of America. 102: 2210-5. PMID 15677317 DOI: 10.1073/Pnas.0406506102  0.571
2004 Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, Ebbole DJ. Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 41: 1104-19. PMID 15531214 DOI: 10.1016/J.Fgb.2004.08.009  0.727
2004 Allen GC, Farnell Y, Bell-Pedersen D, Cassone VM, Earnest DJ. Effects of altered Clock gene expression on the pacemaker properties of SCN2.2 cells and oscillatory properties of NIH/3T3 cells. Neuroscience. 127: 989-99. PMID 15312911 DOI: 10.1016/J.Neuroscience.2004.06.003  0.553
2004 Vitalini MW, Morgan LW, March IJ, Bell-Pedersen D. A genetic selection for circadian output pathway mutations in Neurospora crassa. Genetics. 167: 119-29. PMID 15166141 DOI: 10.1534/Genetics.167.1.119  0.804
2004 Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, et al. Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiology and Molecular Biology Reviews : Mmbr. 68: 1-108. PMID 15007097 DOI: 10.1128/Mmbr.68.1.1-108.2004  0.42
2003 Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D. Multiple oscillators regulate circadian gene expression in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 100: 13597-602. PMID 14597725 DOI: 10.1073/Pnas.2233734100  0.819
2003 Bailey MJ, Beremand PD, Hammer R, Bell-Pedersen D, Thomas TL, Cassone VM. Transcriptional profiling of the chick pineal gland, a photoreceptive circadian oscillator and pacemaker. Molecular Endocrinology (Baltimore, Md.). 17: 2084-95. PMID 12881511 DOI: 10.1210/Me.2003-0121  0.625
2003 Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Bell-Pedersen D, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554  0.376
2003 Greene AV, Keller N, Haas H, Bell-Pedersen D. A circadian oscillator in Aspergillus spp. regulates daily development and gene expression. Eukaryotic Cell. 2: 231-7. PMID 12684372 DOI: 10.1128/Ec.2.2.231-237.2003  0.632
2003 Morgan LW, Greene AV, Bell-Pedersen D. Circadian and light-induced expression of luciferase in Neurospora crassa. Fungal Genetics and Biology : Fg & B. 38: 327-32. PMID 12684022 DOI: 10.1016/S1087-1845(02)00562-5  0.542
2003 Correa A, Greene AV, Lewis ZA, Bell-Pedersen D. Molecular genetics of circadian rhythms in neurospora crassa Applied Mycology and Biotechnology. 3: 43-63. DOI: 10.1016/S1874-5334(03)80006-0  0.803
2002 Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, Loros JJ. Neurospora clock-controlled gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development. Eukaryotic Cell. 1: 33-43. PMID 12455969 DOI: 10.1128/Ec.1.1.33-43.2002  0.774
2002 Correa A, Bell-Pedersen D. Distinct signaling pathways from the circadian clock participate in regulation of rhythmic conidiospore development in Neurospora crassa. Eukaryotic Cell. 1: 273-80. PMID 12455961 DOI: 10.1128/Ec.1.2.273-280.2002  0.763
2002 Lewis ZA, Correa A, Schwerdtfeger C, Link KL, Xie X, Gomer RH, Thomas T, Ebbole DJ, Bell-Pedersen D. Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa. Molecular Microbiology. 45: 917-31. PMID 12180913 DOI: 10.1046/J.1365-2958.2002.03074.X  0.796
2002 Bobrowicz P, Pawlak R, Correa A, Bell-Pedersen D, Ebbole DJ. The Neurospora crassa pheromone precursor genes are regulated by the mating type locus and the circadian clock. Molecular Microbiology. 45: 795-804. PMID 12139624 DOI: 10.1046/J.1365-2958.2002.03052.X  0.683
2001 Morgan LW, Feldman JF, Bell-Pedersen D. Genetic interactions between clock mutations in Neurospora crassa: Can they help us to understand complexity? Philosophical Transactions of the Royal Society B: Biological Sciences. 356: 1717-1724. PMID 11710978 DOI: 10.1098/Rstb.2001.0967  0.564
2001 Bell-Pedersen D, Crosthwaite SK, Lakin-Thomas PL, Merrow M, Økland M. The Neurospora circadian clock: simple or complex? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 356: 1697-709. PMID 11710976 DOI: 10.1098/Rstb.2001.0968  0.608
2001 Bell-Pedersen D, Lewis ZA, Loros JJ, Dunlap JC. The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg-2) gene. Molecular Microbiology. 41: 897-909. PMID 11532152 DOI: 10.1046/J.1365-2958.2001.02558.X  0.781
2001 Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ. vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genetics and Biology : Fg & B. 32: 169-81. PMID 11343403 DOI: 10.1006/Fgbi.2001.1264  0.756
2001 Zhu H, Nowrousian M, Kupfer D, Colot HV, Berrocal-Tito G, Lai H, Bell-Pedersen D, Roe BA, Loros JJ, Dunlap JC. Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes. Genetics. 157: 1057-65. PMID 11238394  0.336
2000 Bell-Pedersen D. Understanding circadian rhythmicity in Neurospora crassa: From behavior to genes and back again Fungal Genetics and Biology. 29: 1-18. PMID 10779395 DOI: 10.1006/Fgbi.2000.1185  0.587
1998 Bell-Pedersen D. Keeping pace with Neurospora circadian rhythms Microbiology. 144: 1699-1711. PMID 9695904 DOI: 10.1099/00221287-144-7-1699  0.541
1996 Dunlap JC, Loros JJ, Merrow M, Crosthwaite S, Bell-Pedersen D, Garceau N, Shinohara M, Cho H, Luo C. The genetic and molecular dissection of a prototypic circadian system. Progress in Brain Research. 111: 11-27. PMID 8990904 DOI: 10.1016/S0079-6123(08)60397-0  0.549
1996 Bell-Pedersen D, Shinohara ML, Loros JJ, Dunlap JC. Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific Proceedings of the National Academy of Sciences of the United States of America. 93: 13096-13101. PMID 8917550 DOI: 10.1073/Pnas.93.23.13096  0.631
1996 Bell-Pedersen D, Dunlap JC, Loros JJ. Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene Molecular and Cellular Biology. 16: 513-521. PMID 8552078 DOI: 10.1128/Mcb.16.2.513  0.55
1996 Bell-Pedersen D, Garceau N, Loros JJ. Circadian rhythms in fungi Journal of Genetics. 75: 387-401. DOI: 10.1007/Bf02966317  0.617
1995 Dunlap JC, Loros JJ, Aronson BD, Merrow M, Crosthwaite S, Bell-Pedersen D, Johnson K, Lindgren K, Garceau NY. The genetic basis of the circadian clock: identification of frq and FRQ as clock components in Neurospora. Ciba Foundation Symposium. 183: 3-17; discussion 17-. PMID 7656691 DOI: 10.1002/9780470514597.ch2  0.528
1993 Aronson BD, Bell-Pedersen D, Block GD, Bos NP, Dunlap JC, Eskin A, Garceau NY, Geusz ME, Johnson KA, Khalsa SB. Circadian rhythms. Brain Research. Brain Research Reviews. 18: 315-33. PMID 8401597 DOI: 10.1016/0165-0173(93)90015-R  0.471
1992 Bell-Pedersen D, Dunlap JC, Loros JJ. The Neurospora circadian clock-controlled gene, ccg-2, is allelic to eas and encodes, a fungal hydrophobin required for formation of the conidial rodlet layer Genes and Development. 6: 2382-2394. PMID 1459460 DOI: 10.1101/Gad.6.12A.2382  0.611
1991 Bell-Pedersen D, Galloway Salvo JL, Belfort M. A transcription terminator in the thymidylate synthase (thyA) structural gene of Escherichia coli and construction of a viable thyA::Km(r) deletion Journal of Bacteriology. 173: 1193-1200. PMID 1991715 DOI: 10.1128/Jb.173.3.1193-1200.1991  0.38
1989 Quirk SM, Bell-Pedersen D, Belfort M. Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames. Cell. 56: 455-65. PMID 2644046 DOI: 10.1016/0092-8674(89)90248-1  0.319
1988 Gott JM, Zeeh A, Bell-Pedersen D, Ehrenman K, Belfort M, Shub DA. Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside Genes &Amp; Development. 2: 1791-1799. PMID 2467840 DOI: 10.1101/Gad.2.12B.1791  0.426
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