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Frank V. Murphy, Ph.D. - Publications

Affiliations: 
2000 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Biochemistry, General Biophysics, Molecular Biology
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV, Ranganathan SV, Sarachan KL, Agris PF. A structural basis for restricted codon recognition mediated by 2-thiocytidine in tRNA containing a wobble position inosine. Journal of Molecular Biology. PMID 31945376 DOI: 10.1016/J.Jmb.2019.12.016  0.385
2014 Demirci H, Murphy FV, Murphy EL, Connetti JL, Dahlberg AE, Jogl G, Gregory ST. Structural analysis of base substitutions in Thermus thermophilus 16S rRNA conferring streptomycin resistance. Antimicrobial Agents and Chemotherapy. 58: 4308-17. PMID 24820088 DOI: 10.1128/Aac.02857-14  0.361
2013 Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST. The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna (New York, N.Y.). 19: 1791-801. PMID 24152548 DOI: 10.1261/Rna.040030.113  0.343
2013 Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G. A structural basis for streptomycin-induced misreading of the genetic code. Nature Communications. 4: 1355. PMID 23322043 DOI: 10.1038/Ncomms2346  0.407
2012 Vendeix FA, Murphy FV, Cantara WA, Leszczy?ska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism. Journal of Molecular Biology. 416: 467-85. PMID 22227389 DOI: 10.1016/J.Jmb.2011.12.048  0.327
2010 Demirci H, Murphy F, Belardinelli R, Kelley AC, Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G. Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function. Rna (New York, N.Y.). 16: 2319-24. PMID 20962038 DOI: 10.1261/Rna.2357210  0.572
2009 Schmeing TM, Voorhees RM, Kelley AC, Gao YG, Murphy FV, Weir JR, Ramakrishnan V. The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science (New York, N.Y.). 326: 688-94. PMID 19833920 DOI: 10.1126/Science.1179700  0.738
2009 Schuette JC, Murphy FV, Kelley AC, Weir JR, Giesebrecht J, Connell SR, Loerke J, Mielke T, Zhang W, Penczek PA, Ramakrishnan V, Spahn CM. GTPase activation of elongation factor EF-Tu by the ribosome during decoding. The Embo Journal. 28: 755-65. PMID 19229291 DOI: 10.1038/emboj.2009.26  0.601
2007 Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V. Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines. Nature Structural & Molecular Biology. 14: 498-502. PMID 17496902 DOI: 10.1038/Nsmb1242  0.739
2006 Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V. Structure of the 70S ribosome complexed with mRNA and tRNA. Science (New York, N.Y.). 313: 1935-42. PMID 16959973 DOI: 10.1126/Science.1131127  0.625
2005 Petry S, Brodersen DE, Murphy FV, Dunham CM, Selmer M, Tarry MJ, Kelley AC, Ramakrishnan V. Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon. Cell. 123: 1255-66. PMID 16377566 DOI: 10.1016/J.Cell.2005.09.039  0.654
2004 Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF. The role of modifications in codon discrimination by tRNA(Lys)UUU. Nature Structural & Molecular Biology. 11: 1186-91. PMID 15558052 DOI: 10.1038/Nsmb861  0.607
2004 Murphy FV, Ramakrishnan V. Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nature Structural & Molecular Biology. 11: 1251-2. PMID 15558050 DOI: 10.1038/nsmb866  0.553
2003 Klass J, Murphy FV, Fouts S, Serenil M, Changela A, Siple J, Churchill ME. The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity. Nucleic Acids Research. 31: 2852-64. PMID 12771212 DOI: 10.1093/Nar/Gkg389  0.623
2002 Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V. Selection of tRNA by the ribosome requires a transition from an open to a closed form Cell. 111: 721-732. PMID 12464183 DOI: 10.1016/S0092-8674(02)01086-3  0.625
2001 Watson WT, Murphy FV, Gould TA, Jambeck P, Val DL, Cronan JE, Beck von Bodman S, Churchill ME. Crystallization and rhenium MAD phasing of the acyl-homoserinelactone synthase EsaI. Acta Crystallographica. Section D, Biological Crystallography. 57: 1945-9. PMID 11717525 DOI: 10.1107/S0907444901014512  0.629
2000 Murphy FV, Churchill ME. Nonsequence-specific DNA recognition: a structural perspective. Structure (London, England : 1993). 8: R83-9. PMID 10801483 DOI: 10.1016/S0969-2126(00)00126-X  0.634
1999 Murphy FV, Sweet RM, Churchill ME. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. The Embo Journal. 18: 6610-8. PMID 10581235 DOI: 10.1093/Emboj/18.23.6610  0.639
1999 Murphy FV, Sehy JV, Dow LK, Gao YG, Churchill ME. Co-crystallization and preliminary crystallographic analysis of the high mobility group domain of HMG-D bound to DNA. Acta Crystallographica. Section D, Biological Crystallography. 55: 1594-7. PMID 10489457 DOI: 10.1107/S0907444999008240  0.646
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