45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lynch M, Haubold B, Pfaffelhuber P, Maruki T. Inference of Historical Population-Size Changes with Allele-Frequency Data. G3 (Bethesda, Md.). PMID 31699776 DOI: 10.1534/G3.119.400854  0.64
2018 Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. High-Complexity Regions in Mammalian Genomes are Enriched for Developmental Genes. Bioinformatics (Oxford, England). PMID 30395202 DOI: 10.1093/Bioinformatics/Bty922  0.64
2016 Odenthal-Hesse L, Dutheil JY, Klötzl F, Haubold B. hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics (Oxford, England). PMID 27153632 DOI: 10.1093/Bioinformatics/Btw195  0.64
2016 Klötzl F, Haubold B. Support Values for Genome Phylogenies. Life (Basel, Switzerland). 6. PMID 26959064 DOI: 10.3390/Life6010011  0.64
2015 Krause L, Haubold B, Börsch-Haubold AG. Social exclusion changes histone modifications H3K4me3 and H3K27ac in liver tissue of wild house mice. Plos One. 10: e0133988. PMID 26267652 DOI: 10.1371/Journal.Pone.0133988  0.64
2015 Haubold B, Klötzl F, Pfaffelhuber P. andi: fast and accurate estimation of evolutionary distances between closely related genomes. Bioinformatics (Oxford, England). 31: 1169-75. PMID 25504847 DOI: 10.1093/Bioinformatics/Btu815  0.64
2014 Lynch M, Xu S, Maruki T, Jiang X, Pfaffelhuber P, Haubold B. Genome-wide linkage-disequilibrium profiles from single individuals. Genetics. 198: 269-81. PMID 24948778 DOI: 10.1534/Genetics.114.166843  0.64
2014 Börsch-Haubold AG, Montero I, Konrad K, Haubold B. Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity. Plos One. 9: e97568. PMID 24849289 DOI: 10.1371/Journal.Pone.0097568  0.64
2014 Haubold B. Alignment-free phylogenetics and population genetics. Briefings in Bioinformatics. 15: 407-18. PMID 24291823 DOI: 10.1093/Bib/Bbt083  0.64
2013 Haubold B, Krause L, Horn T, Pfaffelhuber P. An alignment-free test for recombination. Bioinformatics (Oxford, England). 29: 3121-7. PMID 24064419 DOI: 10.1093/Bioinformatics/Btt550  0.64
2013 McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Vanneste J, et al. Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. Plos Pathogens. 9: e1003503. PMID 23935484 DOI: 10.1371/Journal.Ppat.1003503  0.64
2013 Thota A, Michael S, Xu S, Haubold B, Doak T, Henschel R. Making campus bridging work for researchers: A case study with mlRho Acm International Conference Proceeding Series. DOI: 10.1145/2484762.2484803  0.64
2012 Haubold B, Pfaffelhuber P. Alignment-free population genomics: an efficient estimator of sequence diversity. G3 (Bethesda, Md.). 2: 883-9. PMID 22908037 DOI: 10.1534/G3.112.002527  0.64
2012 Huang W, Haubold B, Hauert C, Traulsen A. Emergence of stable polymorphisms driven by evolutionary games between mutants. Nature Communications. 3: 919. PMID 22735447 DOI: 10.1038/Ncomms1930  0.64
2011 Domazet-Lošo M, Haubold B. Alignment-free detection of horizontal gene transfer between closely related bacterial genomes. Mobile Genetic Elements. 1: 230-235. PMID 22312592 DOI: 10.4161/Mge.1.3.18065  0.72
2011 Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE, Städler T, Stephan W, Metzler D. Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. Plos One. 6: e18155. PMID 21637331 DOI: 10.1371/Journal.Pone.0018155  0.64
2011 Domazet-Lošo M, Haubold B. Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics (Oxford, England). 27: 1466-72. PMID 21471011 DOI: 10.1093/Bioinformatics/Btr176  0.64
2011 Haubold B, Reed FA, Pfaffelhuber P. Alignment-free estimation of nucleotide diversity. Bioinformatics (Oxford, England). 27: 449-55. PMID 21156730 DOI: 10.1093/Bioinformatics/Btq689  0.64
2010 Haubold B, Pfaffelhuber P, Lynch M. mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology. 19: 277-84. PMID 20331786 DOI: 10.1111/J.1365-294X.2009.04482.X  0.64
2010 Wolf JB, Bayer T, Haubold B, Schilhabel M, Rosenstiel P, Tautz D. Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology. 19: 162-75. PMID 20331778 DOI: 10.1111/J.1365-294X.2009.04471.X  0.64
2009 Domazet-Loso M, Haubold B. Efficient estimation of pairwise distances between genomes. Bioinformatics (Oxford, England). 25: 3221-7. PMID 19825795 DOI: 10.1093/Bioinformatics/Btp590  1
2009 Haubold B, Pfaffelhuber P, Domazet-Loso M, Wiehe T. Estimating mutation distances from unaligned genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1487-500. PMID 19803738 DOI: 10.1089/Cmb.2009.0106  1
2009 Städler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P. The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics. 182: 205-16. PMID 19237689 DOI: 10.1534/Genetics.108.094904  1
2008 Haubold B, Domazet-Lošo M, Wiehe T. An alignment-free distance measure for closely related genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 87-99. DOI: 10.1007/978-3-540-87989-3_7  1
2006 Haubold B, Wiehe T. How repetitive are genomes? Bmc Bioinformatics. 7: 541. PMID 17187668 DOI: 10.1186/1471-2105-7-541  1
2006 Pfaffelhuber P, Haubold B, Wakolbinger A. Approximate genealogies under genetic hitchhiking Genetics. 174: 1995-2008. PMID 17182733 DOI: 10.1534/Genetics.106.061887  1
2006 Haubold B, Wiehe T. Introduction to computational biology: An evolutionary approach Introduction to Computational Biology: An Evolutionary Approach. 1-328. DOI: 10.1007/3-7643-7387-3  1
2005 Haubold B, Pierstorff N, Möller F, Wiehe T. Genome comparison without alignment using shortest unique substrings. Bmc Bioinformatics. 6: 123. PMID 15910684 DOI: 10.1186/1471-2105-6-123  1
2004 Haubold B, Wiehe T. Comparative genomics: methods and applications. Die Naturwissenschaften. 91: 405-21. PMID 15278216 DOI: 10.1007/S00114-004-0542-8  1
2003 Otte K, Kranz H, Kober I, Thompson P, Hoefer M, Haubold B, Remmel B, Voss H, Kaiser C, Albers M, Cheruvallath Z, Jackson D, Casari G, Koegl M, Pääbo S, et al. Identification of farnesoid X receptor beta as a novel mammalian nuclear receptor sensing lanosterol. Molecular and Cellular Biology. 23: 864-72. PMID 12529392 DOI: 10.1128/Mcb.23.3.864-872.2003  1
2002 Haubold B, Kroymann J, Ratzka A, Mitchell-Olds T, Wiehe T. Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana. Genetics. 161: 1269-78. PMID 12136029  1
2002 Eriksson A, Haubold B, Mehlig B. Statistics of selectively neutral genetic variation Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 040901. PMID 12005797 DOI: 10.1103/PhysRevE.65.040901  0.64
2002 Haubold B, Wiehe T. Calculating the SNP-effective sample size from an alignment. Bioinformatics (Oxford, England). 18: 36-8. PMID 11836209 DOI: 10.1093/Bioinformatics/18.1.36  1
2001 Koch MA, Weisshaar B, Kroymann J, Haubold B, Mitchell-Olds T. Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters. Molecular Biology and Evolution. 18: 1882-91. PMID 11557794 DOI: 10.1093/Oxfordjournals.Molbev.A003729  1
2001 Haubold B, Wiehe T. Statistics of divergence times Molecular Biology and Evolution. 18: 1157-1160. PMID 11420356 DOI: 10.1093/Oxfordjournals.Molbev.A003902  1
2001 Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. American Journal of Botany. 88: 534-44. PMID 11250830  1
2001 Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences American Journal of Botany. 88: 534-544. DOI: 10.2307/2657117  1
2000 Sharbel TF, Haubold B, Mitchell-Olds T. Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe Molecular Ecology. 9: 2109-2118. PMID 11123622 DOI: 10.1046/J.1365-294X.2000.01122.X  1
2000 Haubold B, Hudson RR. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis. Bioinformatics (Oxford, England). 16: 847-8. PMID 11108709 DOI: 10.1093/bioinformatics/16.9.847  1
2000 Koch MA, Haubold B, Mitchell-Olds T. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae) Molecular Biology and Evolution. 17: 1483-1498. PMID 11018155 DOI: 10.1093/Oxfordjournals.Molbev.A026248  1
2000 Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, et al. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Molecular Biology and Evolution. 17: 1467-82. PMID 11018154 DOI: 10.1093/Oxfordjournals.Molbev.A026247  1
1998 Preston GM, Haubold B, Rainey PB. Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis. Current Opinion in Microbiology. 1: 589-97. PMID 10066526 DOI: 10.1016/S1369-5274(98)80094-5  0.64
1998 Haubold B, Travisano M, Rainey PB, Hudson RR. Detecting linkage disequilibrium in bacterial populations. Genetics. 150: 1341-8. PMID 9832514  1
1997 Haubold B, Rainey PB. Towards an Understanding of the Population Genetics of Plant-Colonizing Bacteria Advances in Botanical Research. 24: 335-351. DOI: 10.1016/S0065-2296(08)60078-6  0.64
1996 Haubold B, Rainey PB. Genetic and ecotypic structure of a fluorescent Pseudomonas population Molecular Ecology. 5: 747-761. DOI: 10.1111/J.1365-294X.1996.Tb00371.X  1
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