41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jadhav A, Zhao L, Liu W, Ding C, Nair V, Ramos-Onsins SE, Ferretti L. Genomic Diversity and Evolution of Quasispecies in Newcastle Disease Virus Infections. Viruses. 12. PMID 33202558 DOI: 10.3390/v12111305  0.44
2018 Ferretti L, Ribeca P, Ramos-Onsins SE. The Site Frequency/Dosage Spectrum of Autopolyploid Populations. Frontiers in Genetics. 9: 480. PMID 30405691 DOI: 10.3389/fgene.2018.00480  0.44
2018 Ferretti L, Klassmann A, Raineri E, Ramos-Onsins SE, Wiehe T, Achaz G. The neutral frequency spectrum of linked sites. Theoretical Population Biology. PMID 29964061 DOI: 10.1016/J.Tpb.2018.06.001  0.44
2018 Guirao-Rico S, Ramirez O, Ojeda A, Amills M, Ramos-Onsins SE. Porcine Y-chromosome variation is consistent with the occurrence of paternal gene flow from non-Asian to Asian populations. Heredity. 120: 63-76. PMID 29234173 DOI: 10.1038/s41437-017-0002-9  0.84
2017 Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248  0.84
2017 Ferretti L, Ledda A, Wiehe T, Achaz G, Ramos-Onsins SE. Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests. Genetics. PMID 28679545 DOI: 10.1534/Genetics.116.188763  0.44
2016 Clop A, Sharaf A, Castelló A, Ramos-Onsins S, Cirera S, Mercadé A, Derdak S, Beltran S, Huisman A, Fredholm M, van As P, Sánchez A. Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes. Bmc Genomics. 17: 685. PMID 27566279 DOI: 10.1186/S12864-016-2972-Z  1
2015 Sanseverino W, Hénaff E, Vives C, Pinosio S, Burgos-Paz W, Morgante M, Ramos-Onsins SE, Garcia-Mas J, Casacuberta JM. Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome. Molecular Biology and Evolution. 32: 2760-74. PMID 26174143 DOI: 10.1093/molbev/msv152  1
2015 Bianco E, Nevado B, Ramos-Onsins SE, Pérez-Enciso M. A deep catalog of autosomal single nucleotide variation in the pig. Plos One. 10: e0118867. PMID 25789620 DOI: 10.1371/journal.pone.0118867  1
2015 Pérez-Enciso M, Burgos-Paz W, Ramos-Onsins SE. On genetic differentiation between domestic pigs and Tibetan wild boars. Nature Genetics. 47: 190-2. PMID 25711861 DOI: 10.1038/ng.3191  1
2015 Argyris JM, Ruiz-Herrera A, Madriz-Masis P, Sanseverino W, Morata J, Pujol M, Ramos-Onsins SE, Garcia-Mas J. Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly. Bmc Genomics. 16: 4. PMID 25612459 DOI: 10.1186/s12864-014-1196-3  1
2015 Ferretti L, Ramos-Onsins SE. A generalized Watterson estimator for next-generation sequencing: From trios to autopolyploids. Theoretical Population Biology. 100: 79-87. PMID 25595553 DOI: 10.1016/j.tpb.2015.01.001  1
2014 Ramos-Onsins SE, Burgos-Paz W, Manunza A, Amills M. Mining the pig genome to investigate the domestication process Heredity. 113: 471-484. PMID 25074569 DOI: 10.1038/hdy.2014.68  1
2014 Nevado B, Ramos-Onsins SE, Perez-Enciso M. Resequencing studies of nonmodel organisms using closely related reference genomes: Optimal experimental designs and bioinformatics approaches for population genomics Molecular Ecology. 23: 1764-1779. PMID 24795998 DOI: 10.1111/mec.12693  1
2014 Pfeifer B, Wittelsbürger U, Ramos-Onsins SE, Lercher MJ. PopGenome: an efficient Swiss army knife for population genomic analyses in R. Molecular Biology and Evolution. 31: 1929-36. PMID 24739305 DOI: 10.1093/molbev/msu136  1
2014 Montemuiño C, Espinosa A, Moure JC, Vera-Rodríguez G, Ramos-Onsins S, Budé PH. MsPar: A parallel coalescent simulator Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8374: 321-330. DOI: 10.1007/978-3-642-54420-0_32  1
2013 Ferretti L, Ramos-Onsins SE, Pérez-Enciso M. Population genomics from pool sequencing. Molecular Ecology. 22: 5561-76. PMID 24102736 DOI: 10.1111/mec.12522  1
2013 Segura J, Ferretti L, Ramos-Onsins S, Capilla L, Farré M, Reis F, Oliver-Bonet M, Fernández-Bellón H, Garcia F, Garcia-Caldés M, Robinson TJ, Ruiz-Herrera A. Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference. Proceedings. Biological Sciences / the Royal Society. 280: 20131945. PMID 24068360 DOI: 10.1098/Rspb.2013.1945  1
2013 Esteve-Codina A, Paudel Y, Ferretti L, Raineri E, Megens HJ, Silió L, Rodríguez MC, Groenen MA, Ramos-Onsins SE, Pérez-Enciso M. Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs. Bmc Genomics. 14: 148. PMID 23497037 DOI: 10.1186/1471-2164-14-148  1
2013 Burgos-Paz W, Souza CA, Castelló A, Mercadé A, Okumura N, Sheremet'eva IN, Huang LS, Cho IC, Paiva SR, Ramos-Onsins S, Pérez-Enciso M. Worldwide genetic relationships of pigs as inferred from X chromosome SNPs. Animal Genetics. 44: 130-8. PMID 22590984 DOI: 10.1111/J.1365-2052.2012.02374.X  1
2012 Ferretti L, Raineri E, Ramos-Onsins S. Neutrality tests for sequences with missing data. Genetics. 191: 1397-401. PMID 22661328 DOI: 10.1534/genetics.112.139949  1
2011 Amaral AJ, Ferretti L, Megens HJ, Crooijmans RP, Nie H, Ramos-Onsins SE, Perez-Enciso M, Schook LB, Groenen MA. Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. Plos One. 6: e14782. PMID 21483733 DOI: 10.1371/Journal.Pone.0014782  1
2011 Ojeda A, Ramos-Onsins SE, Marletta D, Huang LS, Folch JM, Pérez-Enciso M. Evolutionary study of a potential selection target region in the pig. Heredity. 106: 330-8. PMID 20502482 DOI: 10.1038/hdy.2010.61  1
2010 Heidel AJ, Ramos-Onsins SE, Wang WK, Chiang TY, Mitchell-Olds T. Population history in Arabidopsis halleri using multilocus analysis. Molecular Ecology. 19: 3364-79. PMID 20670364 DOI: 10.1111/J.1365-294X.2010.04761.X  1
2010 Ferretti L, Perez-Enciso M, Ramos-Onsins S. Optimal neutrality tests based on the frequency spectrum. Genetics. 186: 353-65. PMID 20610408 DOI: 10.1534/genetics.110.118570  1
2010 He F, Chen WH, Collins S, Acquisti C, Goebel U, Ramos-Onsins S, Lercher MJ, de Meaux J. Assessing the influence of adjacent gene orientation on the evolution of gene upstream regions in Arabidopsis thaliana. Genetics. 185: 695-701. PMID 20233855 DOI: 10.1534/Genetics.110.114629  1
2009 Song BH, Windsor AJ, Schmid KJ, Ramos-Onsins S, Schranz ME, Heidel AJ, Mitchell-Olds T. Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis. Genetics. 181: 1021-33. PMID 19104077 DOI: 10.1534/Genetics.108.095364  1
2008 Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics. 179: 555-67. PMID 18493071 DOI: 10.1534/Genetics.107.083006  0.84
2008 Ramos-Onsins SE, Puerma E, Balañá-Alcaide D, Salguero D, Aguadé M. Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana. Molecular Ecology. 17: 1211-23. PMID 18221273 DOI: 10.1111/j.1365-294X.2007.03633.x  1
2007 Ramos-Onsins SE, Mitchell-Olds T. Mlcoalsim: multilocus coalescent simulations. Evolutionary Bioinformatics Online. 3: 41-4. PMID 19430603 DOI: 10.4137/Ebo.S0  1
2007 Ramos-Onsins SE, Mousset S, Mitchell-Olds T, Stephan W. Population genetic inference using a fixed number of segregating sites: a reassessment. Genetical Research. 89: 231-44. PMID 18208629 DOI: 10.1017/S0016672307008877  1
2006 Balañá-Alcaide D, Ramos-Onsins SE, Boone Q, Aguadé M. Highly structured nucleotide variation within and among Arabidopsis lyrata populations at the FAH1 and DFR gene regions. Molecular Ecology. 15: 2059-68. PMID 16780424 DOI: 10.1111/j.1365-294X.2006.02918.x  1
2006 Quesada H, Ramos-Onsins SE, Rozas J, Aguadé M. Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans. Molecular Biology and Evolution. 23: 1643-7. PMID 16757657 DOI: 10.1093/Molbev/Msl031  1
2005 Quesada H, Ramos-Onsins SE, Aguadé M. Birth-and-death evolution of the Cecropin multigene family in Drosophila. Journal of Molecular Evolution. 60: 1-11. PMID 15696364 DOI: 10.1007/s00239-004-0053-4  1
2005 Schmid KJ, Ramos-Onsins S, Ringys-Beckstein H, Weisshaar B, Mitchell-Olds T. A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics. 169: 1601-15. PMID 15654111 DOI: 10.1534/Genetics.104.033795  1
2004 Ramos-Onsins SE, Stranger BE, Mitchell-Olds T, Aguadé M. Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata. Genetics. 166: 373-88. PMID 15020431 DOI: 10.1534/Genetics.166.1.373  1
2002 Ramos-Onsins SE, Rozas J. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution. 19: 2092-100. PMID 12446801 DOI: 10.1093/Oxfordjournals.Molbev.A004034  1
2002 Kuittinen H, Aguadé M, Charlesworth D, Haan ADE, Lauga B, Mitchell-Olds T, Oikarinen S, Ramos-Onsins S, Stranger B, Van Tienderen P, Savolainen O. Primers for 22 candidate genes for ecological adaptations in Brassicaceae Molecular Ecology Notes. 2: 258-262. DOI: 10.1046/J.1471-8286.2002.00210.X  1
2000 Zhao Z, Jin L, Fu YX, Ramsay M, Jenkins T, Leskinen E, Pamilo P, Trexler M, Patthy L, Jorde LB, Ramos-Onsins S, Yu N, Li WH. Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22 Proceedings of the National Academy of Sciences of the United States of America. 97: 11354-11358. PMID 11005839 DOI: 10.1073/Pnas.200348197  1
1998 Ramos-Onsins S, Aguadé M. Molecular evolution of the Cecropin multigene family in Drosophila. functional genes vs. pseudogenes. Genetics. 150: 157-71. PMID 9725836  1
1998 Ramos-Onsins S, Segarra C, Rozas J, Aguadé M. Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region. Molecular Phylogenetics and Evolution. 9: 33-41. PMID 9479691 DOI: 10.1006/Mpev.1997.0438  1
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