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M. Eric Schranz, PhD - Publications

Affiliations: 
2007-2012 Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam, Amsterdam, Netherlands 
 2012- Biosystematics Wageningen University and Research Center, The Netherlands 
Area:
plant genomics, phylogenomics, polyploidy
Website:
https://www.wur.nl/en/Persons/Eric-prof.dr.-ME-Eric-Schranz.htm
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100 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bassetti N, Caarls L, Bouwmeester K, Verbaarschot P, van Eijden E, Zwaan BJ, Bonnema G, Schranz ME, Fatouros NE. A butterfly egg-killing hypersensitive response in Brassica nigra is controlled by a single locus, PEK, containing a cluster of TIR-NBS-LRR receptor genes. Plant, Cell & Environment. PMID 37961842 DOI: 10.1111/pce.14765  0.352
2023 Mabry ME, Abrahams RS, Al-Shehbaz IA, Baker WJ, Barak S, Barker MS, Barrett RL, Beric A, Bhattacharya S, Carey SB, Conant GC, Conran JG, Dassanayake M, Edger PP, Hall JC, ... ... Schranz ME, et al. Complementing model species with model clades. The Plant Cell. PMID 37824826 DOI: 10.1093/plcell/koad260  0.732
2023 Xiong W, van Workum DM, Berke L, Bakker LV, Schijlen E, Becker FFM, van de Geest H, Peters S, Michelmore R, van Treuren R, Jeuken M, Smit S, Schranz ME. Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. G3 (Bethesda, Md.). PMID 37740775 DOI: 10.1093/g3journal/jkad204  0.386
2023 Hendriks KP, Kiefer C, Al-Shehbaz IA, Bailey CD, Hooft van Huysduynen A, Nikolov LA, Nauheimer L, Zuntini AR, German DA, Franzke A, Koch MA, Lysak MA, Toro-Núñez Ó, Özüdoğru B, Invernón VR, ... ... Schranz ME, et al. Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset. Current Biology : Cb. PMID 37659415 DOI: 10.1016/j.cub.2023.08.026  0.648
2023 Zhang Y, Fu Y, Xian W, Li X, Feng Y, Bu F, Shi Y, Chen S, Velzen RV, Battenberg K, Berry AM, Salgado MG, Liu H, Yi T, Fournier P, ... ... Schranz ME, et al. Comparative Phylogenomics and Phylotranscriptomics Provide Insights into the Genetic Complexity of Nitrogen Fixing Root Nodule Symbiosis. Plant Communications. 100671. PMID 37553834 DOI: 10.1016/j.xplc.2023.100671  0.405
2023 Xiong W, Risse J, Berke L, Zhao T, van de Geest H, Oplaat C, Busscher M, Ferreira de Carvalho J, van der Meer IM, Verhoeven KJF, Schranz ME, Vijverberg K. Phylogenomic analysis provides insights into and gene diversification and floral development of the Asteraceae, supported by genome and transcriptome sequences from dandelion (). Frontiers in Plant Science. 14: 1198909. PMID 37457342 DOI: 10.3389/fpls.2023.1198909  0.602
2023 Guerreiro R, Bonthala VS, Schlüter U, Hoang NV, Triesch S, Schranz ME, Weber APM, Stich B. A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. Plant, Cell & Environment. PMID 37431820 DOI: 10.1111/pce.14662  0.328
2023 Pancaldi F, Schranz ME, van Loo EN, Trindade LM. Highly differentiated genomic properties underpin the different cell walls of Poaceae and eudicots. Plant Physiology. PMID 37141316 DOI: 10.1093/plphys/kiad267  0.391
2023 Walden N, Schranz ME. Synteny Identifies Reliable Orthologs for Phylogenomics and Comparative Genomics of the Brassicaceae. Genome Biology and Evolution. 15. PMID 36848527 DOI: 10.1093/gbe/evad034  0.375
2023 Pancaldi F, van Loo EN, Senio S, Al Hassan M, van der Cruijsen K, Paulo MJ, Dolstra O, Schranz ME, Trindade LM. Syntenic Cell Wall QTLs as Versatile Breeding Tools: Intraspecific Allelic Variability and Predictability of Biomass Quality Loci in Target Plant Species. Plants (Basel, Switzerland). 12. PMID 36840127 DOI: 10.3390/plants12040779  0.399
2023 Hoang NV, Sogbohossou EOD, Xiong W, Simpson CJC, Singh P, Walden N, van den Bergh E, Becker FFM, Li Z, Zhu XG, Brautigam A, Weber APM, van Haarst JC, Schijlen EGWM, Hendre PS, ... ... Schranz ME, et al. The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae. The Plant Cell. PMID 36691724 DOI: 10.1093/plcell/koad018  0.817
2023 Almeida-Silva F, Zhao T, Ullrich KK, Schranz ME, Van de Peer Y. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. Bioinformatics (Oxford, England). 39. PMID 36539202 DOI: 10.1093/bioinformatics/btac806  0.461
2022 Chu R, Xu X, Lu Z, Ma Y, Cheng H, Zhu S, Bakker FT, Schranz ME, Wei Z. Plastome-based phylogeny and biogeography of L. (Asteraceae) support revised lettuce gene pool categories. Frontiers in Plant Science. 13: 978417. PMID 36311071 DOI: 10.3389/fpls.2022.978417  0.568
2022 Garassino F, Wijfjes RY, Boesten R, Reyes Marquez F, Becker FFM, Clapero V, van den Hatert I, Holmer R, Schranz ME, Harbinson J, de Ridder D, Smit S, Aarts MGM. The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency. The Plant Journal : For Cell and Molecular Biology. PMID 36239071 DOI: 10.1111/tpj.16005  0.367
2022 Breeschoten T, Schranz ME, Poelman EH, Simon S. Family dinner: Transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species. Ecology and Evolution. 12: e9258. PMID 36091341 DOI: 10.1002/ece3.9258  0.324
2022 Lovell JT, Sreedasyam A, Schranz ME, Wilson M, Carlson JW, Harkess A, Emms D, Goodstein DM, Schmutz J. GENESPACE tracks regions of interest and gene copy number variation across multiple genomes. Elife. 11. PMID 36083267 DOI: 10.7554/eLife.78526  0.44
2022 Gamboa-Tuz SD, Pereira-Santana A, Zhao T, Schranz ME. Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants. Methods in Molecular Biology (Clifton, N.J.). 2512: 199-215. PMID 35818007 DOI: 10.1007/978-1-0716-2429-6_12  0.581
2022 Vos RA, van der Veen-van Wijk CAM, Schranz ME, Vrieling K, Klinkhamer PGL, Lens F. Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea. Plant Methods. 18: 92. PMID 35780674 DOI: 10.1186/s13007-022-00921-y  0.352
2022 Pancaldi F, van Loo EN, Schranz ME, Trindade LM. Genomic Architecture and Evolution of the Gene Superfamily as Revealed by Phylogenomic Analysis. Frontiers in Plant Science. 13: 870818. PMID 35519813 DOI: 10.3389/fpls.2022.870818  0.446
2022 Breeschoten T, van der Linden CFH, Ros VID, Schranz ME, Simon S. Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked across Lepidoptera? Genome Biology and Evolution. 14. PMID 34951642 DOI: 10.1093/gbe/evab283  0.348
2022 Breman FC, Chen G, Snijder RC, Schranz ME, Bakker FT. Repeatome-Based Phylogenetics in Pelargonium Section Ciconium (Sweet) Harvey. Genome Biology and Evolution. 13. PMID 34893846 DOI: 10.1093/gbe/evab269  0.337
2021 Simon S, Breeschoten T, Jansen HJ, Dirks RP, Schranz ME, Ros VID. Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control. G3 (Bethesda, Md.). PMID 34557910 DOI: 10.1093/g3journal/jkab311  0.511
2021 Bayer PE, Scheben A, Golicz AA, Yuan Y, Faure S, Lee H, Chawla HS, Anderson R, Bancroft I, Raman H, Lim YP, Robbens S, Jiang L, Liu S, Barker MS, ... Schranz ME, et al. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Plant Biotechnology Journal. PMID 34310022 DOI: 10.1111/pbi.13674  0.63
2021 Zhao T, Zwaenepoel A, Xue JY, Kao SM, Li Z, Schranz ME, Van de Peer Y. Whole-genome microsynteny-based phylogeny of angiosperms. Nature Communications. 12: 3498. PMID 34108452 DOI: 10.1038/s41467-021-23665-0  0.627
2021 van Velzen R, Schranz ME. Origin and evolution of the cannabinoid oxidocyclase gene family. Genome Biology and Evolution. PMID 34100927 DOI: 10.1093/gbe/evab130  0.427
2021 Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). G3 (Bethesda, Md.). PMID 33993297 DOI: 10.1093/g3journal/jkab140  0.642
2021 Fernandez-Pozo N, Metz T, Chandler JO, Gramzow L, Mérai Z, Maumus F, Scheid OM, Theißen G, Schranz ME, Leubner-Metzger G, Rensing SA. Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research. The Plant Journal : For Cell and Molecular Biology. PMID 33453123 DOI: 10.1111/tpj.15161  0.495
2020 Breman FC, Snijder RC, Korver JW, Pelzer S, Sancho-Such M, Schranz ME, Bakker FT. Interspecific Hybrids Between × and Species From Section Reveal Biparental Plastid Inheritance and Multi-Locus Cyto-Nuclear Incompatibility. Frontiers in Plant Science. 11: 614871. PMID 33391328 DOI: 10.3389/fpls.2020.614871  0.402
2020 Griese E, Caarls L, Bassetti N, Mohammadin S, Verbaarschot P, Bukovinszkine'Kiss G, Poelman EH, Gols R, Schranz ME, Fatouros NE. Insect egg-killing: a new front on the evolutionary arms-race between brassicaceous plants and pierid butterflies. The New Phytologist. PMID 33305360 DOI: 10.1111/nph.17145  0.817
2020 Pereira-Santana A, Gamboa-Tuz SD, Zhao T, Schranz ME, Vinuesa P, Bayona A, Rodríguez-Zapata LC, Castano E. Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin. Plos Computational Biology. 16: e1008318. PMID 33075080 DOI: 10.1371/journal.pcbi.1008318  0.652
2020 Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, et al. Phylogeny and multiple independent whole-genome duplication events in the Brassicales. American Journal of Botany. PMID 32830865 DOI: 10.1002/Ajb2.1514  0.597
2020 Sogbohossou EOD, Achigan-Dako EG, Mumm R, de Vos RCH, Schranz ME. Natural variation in specialised metabolites production in the leafy vegetable spider plant (Gynandropsis gynandra L. (Briq.)) in Africa and Asia. Phytochemistry. 178: 112468. PMID 32771676 DOI: 10.1016/j.phytochem.2020.112468  0.319
2020 Walden N, Nguyen TP, Mandáková T, Lysak MA, Schranz ME. Genomic Blocks in Support Arabideae as Next Diverging Clade in Brassicaceae. Frontiers in Plant Science. 11: 719. PMID 32582250 DOI: 10.3389/fpls.2020.00719  0.347
2020 Abrahams RS, Pires JC, Schranz ME. Genomic Origin and Diversification of the Glucosinolate MAM Locus. Frontiers in Plant Science. 11: 711. PMID 32582245 DOI: 10.3389/Fpls.2020.00711  0.684
2020 Kerstens MHL, Schranz ME, Bouwmeester K. Phylogenomic analysis of the APETALA2 transcription factor subfamily across angiosperms reveals both deep conservation and lineage-specific patterns. The Plant Journal : For Cell and Molecular Biology. PMID 32436321 DOI: 10.1111/tpj.14843  0.448
2020 van de Kerke SJ, van Engelenhoven T, van Es AL, Schat L, van Son LM, Vink S, Hemerik L, van Velzen R, Schranz ME, Bakker FT. Capturing variation in floral shape: a virtual3D based morphospace for . Peerj. 8: e8823. PMID 32274266 DOI: 10.7717/peerj.8823  0.761
2019 Liu Z, Suarez Duran HG, Harnvanichvech Y, Stephenson MJ, Schranz ME, Nelson D, Medema MH, Osbourn A. Drivers of metabolic diversification: how dynamic genomic neighborhoods generate new biosynthetic pathways in the Brassicaceae. The New Phytologist. PMID 31769874 DOI: 10.1111/nph.16338  0.523
2019 Breeschoten T, Ros VID, Schranz ME, Simon S. An influential meal: host plant dependent transcriptional variation in the beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae). Bmc Genomics. 20: 845. PMID 31722664 DOI: 10.1186/s12864-019-6081-7  0.436
2019 Nguyen TP, Mühlich C, Mohammadin S, van den Bergh E, Platts AE, Haas FB, Rensing SA, Schranz ME. Genome Improvement and Genetic Map Construction for , the First Divergent Branch in the Brassicaceae Family. G3 (Bethesda, Md.). PMID 31554715 DOI: 10.1534/g3.119.400657  0.808
2019 Kozik A, Rowan BA, Lavelle D, Berke L, Schranz ME, Michelmore RW, Christensen AC. The alternative reality of plant mitochondrial DNA: One ring does not rule them all. Plos Genetics. 15: e1008373. PMID 31469821 DOI: 10.1371/Journal.Pgen.1008373  0.305
2019 Chen Q, Jiang T, Liu YX, Liu H, Zhao T, Liu Z, Gan X, Hallab A, Wang X, He J, Ma Y, Zhang F, Jin T, Schranz ME, Wang Y, et al. Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota. Science China. Life Sciences. PMID 31079337 DOI: 10.1007/S11427-019-9521-2  0.57
2019 Sogbohossou EOD, Kortekaas D, Achigan-Dako EG, Maundu P, Stoilova T, Van Deynze A, de Vos RCH, Schranz ME. Association between vitamin content, plant morphology and geographical origin in a worldwide collection of the orphan crop Gynandropsis gynandra (Cleomaceae). Planta. PMID 30911886 DOI: 10.1007/s00425-019-03142-1  0.37
2019 Veltman MA, Flowers JM, van Andel TR, Schranz ME. Origins and geographic diversification of African rice (Oryza glaberrima). Plos One. 14: e0203508. PMID 30840637 DOI: 10.1371/journal.pone.0203508  0.488
2019 Vijverberg K, Ozias-Akins P, Schranz ME. Identifying and Engineering Genes for Parthenogenesis in Plants. Frontiers in Plant Science. 10: 128. PMID 30838007 DOI: 10.3389/Fpls.2019.00128  0.464
2019 Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. Bmc Genomics. 20: 95. PMID 30700268 DOI: 10.1186/S12864-019-5452-4  0.808
2019 Zhao T, Schranz ME. Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674676 DOI: 10.1073/pnas.1801757116  0.639
2018 Artur MAS, Zhao T, Ligterink W, Schranz ME, Hilhorst HWM. Dissecting the genomic diversification of LATE EMBRYOGENESIS ABUNDANT (LEA) protein gene families in plants. Genome Biology and Evolution. PMID 30407531 DOI: 10.1093/gbe/evy248  0.662
2018 Gaiero P, Vaio M, Peters SA, Schranz ME, de Jong H, Speranza PR. Comparative analysis of repetitive sequences among species from the potato and the tomato clades. Annals of Botany. PMID 30346473 DOI: 10.1093/Aob/Mcy186  0.488
2018 Sheikhizadeh Anari S, de Ridder D, Schranz ME, Smit S. Efficient inference of homologs in large eukaryotic pan-proteomes. Bmc Bioinformatics. 19: 340. PMID 30257640 DOI: 10.1186/s12859-018-2362-4  0.317
2018 Bayat S, Schranz ME, Roalson EH, Hall JC. Lessons from Cleomaceae, the Sister of Crucifers. Trends in Plant Science. PMID 30006074 DOI: 10.1016/J.Tplants.2018.06.010  0.489
2018 Arisz SA, Heo JY, Koevoets IT, Zhao T, van Egmond P, Meyer J, Zeng W, Niu X, Wang B, Mitchell-Olds T, Schranz ME, Testerink C. Diacylglycerol acyltransferase 1 contributes to freezing tolerance. Plant Physiology. PMID 29907701 DOI: 10.1104/Pp.18.00503  0.798
2018 van Velzen R, Holmer R, Bu F, Rutten L, van Zeijl A, Liu W, Santuari L, Cao Q, Sharma T, Shen D, Roswanjaya Y, Wardhani TAK, Kalhor MS, Jansen J, van den Hoogen J, ... ... Schranz ME, et al. Comparative genomics of the nonlegume reveals insights into evolution of nitrogen-fixing rhizobium symbioses. Proceedings of the National Academy of Sciences of the United States of America. PMID 29717040 DOI: 10.1073/pnas.1721395115  0.539
2018 Reeves G, Singh P, Rossberg TA, Sogbohossou D, Schranz ME, Hibberd JM. Natural variation within a species for traits underpinning C4 photosynthesis. Plant Physiology. PMID 29678862 DOI: 10.1104/pp.18.00168  0.347
2018 Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. American Journal of Botany. PMID 29574686 DOI: 10.1002/Ajb2.1040  0.798
2018 Sogbohossou EOD, Achigan-Dako EG, Maundu P, Solberg S, Deguenon EMS, Mumm RH, Hale I, Van Deynze A, Schranz ME. A roadmap for breeding orphan leafy vegetable species: a case study of Gynandropsis gynandra (Cleomaceae). Horticulture Research. 5: 2. PMID 29423232 DOI: 10.1038/s41438-017-0001-2  0.425
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Schranz ME, et al. Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 1585. PMID 29185503 DOI: 10.1038/S41559-017-0310-8  0.754
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Schranz ME, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/S41559-017-0119  0.804
2017 Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae. American Journal of Botany. PMID 28743759 DOI: 10.3732/Ajb.1700091  0.786
2017 Zhao T, Holmer R, Bruijn S, Angenent GC, van den Burg HA, Schranz ME. Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation. The Plant Cell. PMID 28584165 DOI: 10.1105/tpc.17.00312  0.641
2017 Zhao T, Schranz ME. Network approaches for plant phylogenomic synteny analysis. Current Opinion in Plant Biology. 36: 129-134. PMID 28327435 DOI: 10.1016/j.pbi.2017.03.001  0.586
2017 Akman M, Kleine R, van Tienderen PH, Schranz ME. Identification of the Submergence Tolerance QTL Come Quick Drowning1 (CQD1) in Arabidopsis thaliana. The Journal of Heredity. PMID 28207056 DOI: 10.1093/Jhered/Esx014  0.823
2016 Gaiero P, van de Belt J, Vilaró F, Schranz ME, Speranza P, de Jong H. Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping. Genome. 1-13. PMID 28169563 DOI: 10.1139/Gen-2016-0150  0.413
2016 Lenser T, Graeber K, Cevik ÖS, Adigüzel N, Dönmez AA, Grosche C, Kettermann M, Mayland-Quellhorst S, Mérai Z, Mohammadin S, Nguyen TP, Rümpler F, Schulze C, Sperber K, Steinbrecher T, ... ... Schranz ME, et al. Developmental control and plasticity of fruit and seed dimorphism in the brassica Aethionema. Plant Physiology. PMID 27702842 DOI: 10.1104/Pp.16.00838  0.823
2016 Sheikhizadeh S, Schranz ME, Akdel M, de Ridder D, Smit S. PanTools: representation, storage and exploration of pan-genomic data. Bioinformatics (Oxford, England). 32: i487-i493. PMID 27587666 DOI: 10.1093/bioinformatics/btw455  0.327
2016 van den Bergh E, Hofberger JA, Schranz ME. Flower power and the mustard bomb: Comparative analysis of gene and genome duplications in glucosinolate biosynthetic pathway evolution in Cleomaceae and Brassicaceae. American Journal of Botany. PMID 27313198 DOI: 10.3732/ajb.1500445  0.809
2016 Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, ... ... Schranz ME, et al. Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants. 2: 16074. PMID 27255838 DOI: 10.1038/Nplants.2016.74  0.493
2016 Van Veen H, Vashisht D, Akman M, Girke T, Mustroph A, Reinen E, Hartman S, Kooiker M, van Tienderen P, Schranz ME, Bailey-Serres J, Voesenek LA, Sasidharan R. Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress. Plant Physiology. PMID 27208254 DOI: 10.1104/Pp.16.00472  0.789
2016 Lysak MA, Mandáková T, Schranz ME. Comparative paleogenomics of crucifers: ancestral genomic blocks revisited. Current Opinion in Plant Biology. 30: 108-15. PMID 26945766 DOI: 10.1016/j.pbi.2016.02.001  0.473
2016 Hammoudi V, Vlachakis G, Schranz ME, van den Burg HA. Whole-genome duplications followed by tandem duplications drive diversification of the protein modifier SUMO in Angiosperms. The New Phytologist. PMID 26934536 DOI: 10.1111/nph.13911  0.486
2016 Julkowska MM, Klei K, Fokkens L, Haring MA, Schranz ME, Testerink C. Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in the LRR-KISS gene. Journal of Experimental Botany. 67: 2127-38. PMID 26873976 DOI: 10.1093/Jxb/Erw015  0.422
2015 Mohammadin S, Edger PP, Pires JC, Schranz ME. Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Bmc Plant Biology. 15: 217. PMID 26362138 DOI: 10.1186/S12870-015-0603-5  0.805
2015 Li W, Zhang F, Chang Y, Zhao T, Schranz ME, Wang G. Nicotinate O-Glucosylation Is an Evolutionarily Metabolic Trait Important for Seed Germination under Stress Conditions in Arabidopsis thaliana. The Plant Cell. PMID 26116607 DOI: 10.1105/Tpc.15.00223  0.542
2015 Hofberger JA, Ramirez AM, Bergh Ev, Zhu X, Bouwmeester HJ, Schuurink RC, Schranz ME. Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants. Plos One. 10: e0128808. PMID 26046541 DOI: 10.1371/Journal.Pone.0128808  0.836
2015 Mandáková T, Schranz ME, Sharbel TF, de Jong H, Lysak MA. Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes. The Plant Journal : For Cell and Molecular Biology. 82: 785-93. PMID 25864414 DOI: 10.1111/tpj.12849  0.636
2015 Hofberger JA, Nsibo DL, Govers F, Bouwmeester K, Schranz ME. A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae. Genome Biology and Evolution. 7: 720-34. PMID 25635042 DOI: 10.1093/gbe/evv020  0.816
2014 Hofberger JA, Zhou B, Tang H, Jones JD, Schranz ME. A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants. Bmc Genomics. 15: 966. PMID 25380807 DOI: 10.1186/1471-2164-15-966  0.826
2014 Hartman Y, Hooftman DA, Uwimana B, Schranz ME, van de Wiel CC, Smulders MJ, Visser RG, Michelmore RW, van Tienderen PH. Abiotic stress QTL in lettuce crop-wild hybrids: comparing greenhouse and field experiments. Ecology and Evolution. 4: 2395-409. PMID 25360276 DOI: 10.1002/Ece3.1060  0.777
2014 Heo JY, Feng D, Niu X, Mitchell-Olds T, Van Tienderen PH, Tomes D, Schranz ME. Identification of quantitative trait loci and a candidate locus for freezing tolerance in controlled and outdoor environments in the overwintering crucifer Boechera stricta. Plant, Cell & Environment. 37: 2459-69. PMID 24811132 DOI: 10.1111/Pce.12365  0.792
2014 van Veen H, Akman M, Jamar DCL, Vreugdenhil D, Kooiker M, van Tienderen P, Voesenek LACJ, Schranz ME, Sasidharan R. Group VII Ethylene Response Factor diversification and regulation in four species from flood-prone environments Plant, Cell and Environment. 37: 2421-2432. PMID 24548060 DOI: 10.1111/Pce.12302  0.814
2013 Sasidharan R, Mustroph A, Boonman A, Akman M, Ammerlaan AM, Breit T, Schranz ME, Voesenek LA, van Tienderen PH. Root transcript profiling of two Rorippa species reveals gene clusters associated with extreme submergence tolerance. Plant Physiology. 163: 1277-92. PMID 24077074 DOI: 10.1104/Pp.113.222588  0.819
2013 Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, ... ... Schranz ME, et al. The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. The Plant Cell. 25: 2813-30. PMID 23983221 DOI: 10.1105/Tpc.113.113480  0.821
2013 Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, ... ... Schranz ME, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/Ng.2684  0.827
2013 Lovell JT, Aliyu OM, Mau M, Schranz ME, Koch M, Kiefer C, Song BH, Mitchell-Olds T, Sharbel TF. On the origin and evolution of apomixis in Boechera. Plant Reproduction. 26: 309-15. PMID 23783772 DOI: 10.1007/S00497-013-0218-7  0.803
2012 Prasad KV, Song BH, Olson-Manning C, Anderson JT, Lee CR, Schranz ME, Windsor AJ, Clauss MJ, Manzaneda AJ, Naqvi I, Reichelt M, Gershenzon J, Rupasinghe SG, Schuler MA, Mitchell-Olds T. A gain-of-function polymorphism controlling complex traits and fitness in nature. Science (New York, N.Y.). 337: 1081-4. PMID 22936775 DOI: 10.1126/Science.1221636  0.775
2012 Akman M, Bhikharie AV, McLean EH, Boonman A, Visser EJ, Schranz ME, van Tienderen PH. Wait or escape? Contrasting submergence tolerance strategies of Rorippa amphibia, Rorippa sylvestris and their hybrid. Annals of Botany. 109: 1263-76. PMID 22499857 DOI: 10.1093/Aob/Mcs059  0.789
2012 Schranz ME, Mohammadin S, Edger PP. Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model. Current Opinion in Plant Biology. 15: 147-53. PMID 22480429 DOI: 10.1016/j.pbi.2012.03.011  0.822
2010 Aliyu OM, Schranz ME, Sharbel TF. Quantitative variation for apomictic reproduction in the genus Boechera (Brassicaceae). American Journal of Botany. 97: 1719-31. PMID 21616805 DOI: 10.3732/ajb.1000188  0.644
2009 Barker MS, Vogel H, Schranz ME. Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genome Biology and Evolution. 1: 391-9. PMID 20333207 DOI: 10.1093/Gbe/Evp040  0.566
2009 Song BH, Windsor AJ, Schmid KJ, Ramos-Onsins S, Schranz ME, Heidel AJ, Mitchell-Olds T. Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis. Genetics. 181: 1021-33. PMID 19104077 DOI: 10.1534/Genetics.108.095364  0.794
2007 Kantama L, Sharbel TF, Schranz ME, Mitchell-Olds T, de Vries S, de Jong H. Diploid apomicts of the Boechera holboellii complex display large-scale chromosome substitutions and aberrant chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 14026-31. PMID 17704257 DOI: 10.1073/Pnas.0706647104  0.726
2007 Schranz ME, Windsor AJ, Song BH, Lawton-Rauh A, Mitchell-Olds T. Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis. Plant Physiology. 144: 286-98. PMID 17369426 DOI: 10.1104/Pp.107.096685  0.827
2007 Schranz ME, Song BH, Windsor AJ, Mitchell-Olds T. Comparative genomics in the Brassicaceae: a family-wide perspective. Current Opinion in Plant Biology. 10: 168-75. PMID 17300984 DOI: 10.1016/J.Pbi.2007.01.014  0.821
2006 Schranz ME, Lysak MA, Mitchell-Olds T. The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends in Plant Science. 11: 535-42. PMID 17029932 DOI: 10.1016/J.Tplants.2006.09.002  0.649
2006 Schranz ME, Kantama L, de Jong H, Mitchell-Olds T. Asexual reproduction in a close relative of Arabidopsis: a genetic investigation of apomixis in Boechera (Brassicaceae). The New Phytologist. 171: 425-38. PMID 16866948 DOI: 10.1111/J.1469-8137.2006.01765.X  0.627
2006 Schranz ME, Mitchell-Olds T. Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. The Plant Cell. 18: 1152-65. PMID 16617098 DOI: 10.1105/Tpc.106.041111  0.672
2006 Windsor AJ, Schranz ME, Formanová N, Gebauer-Jung S, Bishop JG, Schnabelrauch D, Kroymann J, Mitchell-Olds T. Partial shotgun sequencing of the Boechera stricta genome reveals extensive microsynteny and promoter conservation with Arabidopsis. Plant Physiology. 140: 1169-82. PMID 16607030 DOI: 10.1104/Pp.105.073981  0.818
2005 Schranz ME, Dobes C, Koch MA, Mitchell-Olds T. Sexual reproduction, hybridization, apomixis, and polyploidization in the genus Boechera (Brassicaceae). American Journal of Botany. 92: 1797-810. PMID 21646097 DOI: 10.3732/ajb.92.11.1797  0.698
2004 Schranz ME, Osborn TC. De novo variation in life-history traits and responses to growth conditions of resynthesized polyploid Brassica napus (Brassicaceae). American Journal of Botany. 91: 174-83. PMID 21653373 DOI: 10.3732/Ajb.91.2.174  0.656
2002 Schranz ME, Quijada P, Sung SB, Lukens L, Amasino R, Osborn TC. Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics. 162: 1457-68. PMID 12454088  0.785
2000 Schranz ME, Osborn TC. Novel flowering time variation in the resynthesized polyploid Brassica napus. The Journal of Heredity. 91: 242-6. PMID 10833052 DOI: 10.1093/JHERED/91.3.242  0.684
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