Barbara Imperiali - Related publications

Massachusetts Institute of Technology, Cambridge, MA, United States 
protein structure, function and design
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25 most relevant papers in past 60 days:
Year Citation  Score
2022 Tsaban T, Varga JK, Avraham O, Ben-Aharon Z, Khramushin A, Schueler-Furman O. Harnessing protein folding neural networks for peptide-protein docking. Nature Communications. 13: 176. PMID 35013344 DOI: 10.1038/s41467-021-27838-9   
2022 Tsao HE, Lui SN, Lo AH, Chen S, Wong HY, Wong CK, Jiang L, Wong KB. Structural insights into how vacuolar sorting receptors recognize the sorting determinants of seed storage proteins. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34983843 DOI: 10.1073/pnas.2111281119   
2022 Deganutti G, Liang YL, Zhang X, Khoshouei M, Clydesdale L, Belousoff MJ, Venugopal H, Truong TT, Glukhova A, Keller AN, Gregory KJ, Leach K, Christopoulos A, Danev R, Reynolds CA, et al. Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation. Nature Communications. 13: 92. PMID 35013280 DOI: 10.1038/s41467-021-27760-0   
2022 Modell AE, Marrone F, Panigrahi NR, Zhang Y, Arora PS. Peptide Tethering: Pocket-Directed Fragment Screening for Peptidomimetic Inhibitor Discovery. Journal of the American Chemical Society. PMID 35029987 DOI: 10.1021/jacs.1c09666   
2022 Tsai CY, Salawu EO, Li H, Lin GY, Kuo TY, Voon L, Sharma A, Hu KD, Cheng YY, Sahoo S, Stuart L, Chen CW, Chang YY, Lu YL, Ke S, et al. Helical structure motifs made searchable for functional peptide design. Nature Communications. 13: 102. PMID 35013238 DOI: 10.1038/s41467-021-27655-0   
2022 Hong SH, Nguyen T, Arora P. Design and Synthesis of Crosslinked Helix Dimers as Protein Tertiary Structure Mimics. Current Protocols. 2: e315. PMID 34982512 DOI: 10.1002/cpz1.315   
2022 Moazzam A, Stanojlovic V, Hinterholzer A, Holzner C, Roschger C, Zierer A, Wiederstein M, Schubert M, Cabrele C. Backbone distortions in lactam-bridged helical peptides. Journal of Peptide Science : An Official Publication of the European Peptide Society. e3400. PMID 34984761 DOI: 10.1002/psc.3400   
2022 Mironov V, Shchugoreva IA, Artyushenko PV, Morozov D, Borbone N, Oliviero G, Zamay TN, Moryachkov RV, Kolovskaya OS, Lukyanenko KA, Song Y, Merkuleva IA, Zabluda VN, Peters G, Koroleva LS, et al. Structure and Interaction Based Design of Anti-SARS-CoV-2 Aptamers. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 35025110 DOI: 10.1002/chem.202104481   
2022 Kean KM, Baril SA, Lamb KN, Dishman SN, Treacy JW, Houk KN, Brustad EM, James LI, Waters ML. Systematic Variation of Both the Aromatic Cage and Dialkyllysine via GCE-SAR Reveal Mechanistic Insights in CBX5 Reader Protein Binding. Journal of Medicinal Chemistry. PMID 35014255 DOI: 10.1021/acs.jmedchem.1c02049   
2022 Dogra P, Arya S, Singh AK, Datta A, Mukhopadhyay S. Conformational and Solvation Dynamics of an Amyloidogenic Intrinsically Disordered Domain of a Melanosomal Protein. The Journal of Physical Chemistry. B. PMID 34986640 DOI: 10.1021/acs.jpcb.1c09304   
2022 Cao Y, Yang R, Wang W, Jiang S, Yang C, Liu N, Dai H, Lee I, Meng X, Yuan Z. Probing the Formation, Structure and Free Energy Relationships of M Protein Dimers of SARS-CoV-2. Computational and Structural Biotechnology Journal. PMID 35047128 DOI: 10.1016/j.csbj.2022.01.007   
2022 Zou W, Huang C, Sun Q, Zhao K, Gao H, Su R, Li Y. A stepwise mutagenesis approach using histidine and acidic amino acid to engineer highly pH-dependent protein switches. 3 Biotech. 12: 21. PMID 34956814 DOI: 10.1007/s13205-021-03079-x   
2022 Duan P, Chen KJ, Wijegunawardena G, Dregni AJ, Wang HK, Wu H, Hong M. Binding Sites of a Positron Emission Tomography Imaging Agent in Alzheimer's β-Amyloid Fibrils Studied Using F Solid-State NMR. Journal of the American Chemical Society. PMID 35015530 DOI: 10.1021/jacs.1c12056   
2022 Drew DL, Ahammad T, Serafin RA, Sahu ID, Khan RH, Faul E, McCarrick RM, Lorigan GA. Probing the local secondary structure of bacteriophage S pinholin membrane protein using electron spin echo envelope modulation spectroscopy. Biochimica Et Biophysica Acta. Biomembranes. 1864: 183836. PMID 34906602 DOI: 10.1016/j.bbamem.2021.183836   
2022 Orioli S, Henning Hansen CG, Lindorff-Larsen K. Transient exposure of a buried phosphorylation site in an autoinhibited protein. Biophysical Journal. 121: 91-101. PMID 34864046 DOI: 10.1016/j.bpj.2021.11.2890   
2022 Wang G, Mohanty B, Williams ML, Doak BC, Dhouib R, Totsika M, McMahon R, Sharma G, Zheng D, Bentley MR, Chin YK, Horne J, Chalmers DK, Heras B, Scanlon MJ. Selective binding of small molecules to Vibrio cholerae DsbA offers a starting point for the design of novel antibacterials. Chemmedchem. PMID 34978144 DOI: 10.1002/cmdc.202100673   
2022 John AM, Sekhon H, Ha JH, Loh SN. Engineering a Fluorescent Protein Color Switch Using Entropy-Driven β-Strand Exchange. Acs Sensors. PMID 35006676 DOI: 10.1021/acssensors.1c02239   
2022 Gao WND, Gao C, Deane JE, Carpentier DCJ, Smith GL, Graham SC. The crystal structure of vaccinia virus protein E2 and perspectives on the prediction of novel viral protein folds. The Journal of General Virology. 103. PMID 35020582 DOI: 10.1099/jgv.0.001716   
2022 Zheng Y, Luo W, Yu L, Chen S, Mao K, Fang Q, Yang Y, Wang C, Zhu H, Tu B. Heterochirality-Mediated Cross-Strand Nested Hydrophobic Interaction Effects Manifested in Surface-Bound Peptide Assembly Structures. The Journal of Physical Chemistry. B. PMID 35029400 DOI: 10.1021/acs.jpcb.1c09747   
2022 Wang S, Brittain WDG, Zhang Q, Lu Z, Tong MH, Wu K, Kyeremeh K, Jenner M, Yu Y, Cobb SL, Deng H. Aminoacyl chain translocation catalysed by a type II thioesterase domain in an unusual non-ribosomal peptide synthetase. Nature Communications. 13: 62. PMID 35013184 DOI: 10.1038/s41467-021-27512-0   
2022 Liang S, Liu X, Zhang S, Li M, Zhang Q, Chen J. Binding mechanism of inhibitors to SARS-CoV-2 main protease deciphered by multiple replica molecular dynamics simulations. Physical Chemistry Chemical Physics : Pccp. PMID 34985081 DOI: 10.1039/d1cp04361g   
2022 Qiu L, Song J, Zhang JZH. Computational Alanine Scanning Reveals Common Features of TCR/pMHC Recognition in HLA-DQ8-Associated Celiac Disease. Methods in Molecular Biology (Clifton, N.J.). 2385: 293-312. PMID 34888725 DOI: 10.1007/978-1-0716-1767-0_13   
2022 Guzovsky AB, Schafer NP, Wolynes PG, Ferreiro DU. Localization of Energetic Frustration in Proteins. Methods in Molecular Biology (Clifton, N.J.). 2376: 387-398. PMID 34845622 DOI: 10.1007/978-1-0716-1716-8_22   
2022 Davies CW, Oh AJ, Mroue R, Steffek M, Bruning JM, Xiao Y, Feng S, Jayakar S, Chan E, Arumugam V, Uribe SC, Drummond J, Frommlet A, Lu C, Franke Y, et al. Conformation-locking antibodies for the discovery and characterization of KRAS inhibitors. Nature Biotechnology. PMID 34992247 DOI: 10.1038/s41587-021-01126-9   
2022 Pérez Carrillo VH, Rose-Sperling D, Tran MA, Wiedemann C, Hellmich UA. Backbone NMR assignment of the nucleotide binding domain of the Bacillus subtilis ABC multidrug transporter BmrA in the post-hydrolysis state. Biomolecular Nmr Assignments. PMID 34988902 DOI: 10.1007/s12104-021-10063-2