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Daniel H. Rich - Related publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
aspartic protease
Website:
http://www.acsmedchem.org/rich.html
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Toplak A, Teixeira de Oliveira EF, Schmidt M, Rozeboom HJ, Wijma HJ, Meekels LKM, de Visser R, Janssen DB, Nuijens T. From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase. Computational and Structural Biotechnology Journal. 19: 1277-1287. PMID 33717424 DOI: 10.1016/j.csbj.2021.02.002   
2021 Kneller DW, Li H, Galanie S, Phillips G, Labbé A, Weiss KL, Zhang Q, Arnould MA, Clyde A, Ma H, Ramanathan A, Jonsson CB, Head MS, Coates L, Louis JM, et al. Structural, Electronic, and Electrostatic Determinants for Inhibitor Binding to Subsites S1 and S2 in SARS-CoV-2 Main Protease. Journal of Medicinal Chemistry. PMID 34705466 DOI: 10.1021/acs.jmedchem.1c01475   
2021 Khan SN, Shaheen F, Aleem U, Sheikh SF, Tamfu AN, Ashraf S, Ul-Haq Z, Ullah S, Wahab AT, Choudhary MI, Jahan H. Peptide Conjugates of 18β-Glycyrrhetinic Acid as Potent Inhibitors of α-Glucosidase and AGEs-Induced Oxidation. European Journal of Pharmaceutical Sciences : Official Journal of the European Federation For Pharmaceutical Sciences. 106045. PMID 34666184 DOI: 10.1016/j.ejps.2021.106045   
2021 Yu Q, Xie L, Li Y, Bai L, Zhao YL, Wei D, Shi T. Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase. Interdisciplinary Sciences, Computational Life Sciences. PMID 34699036 DOI: 10.1007/s12539-021-00482-z   
2021 Maruyama S, Sawano K, Amaki S, Suzuki T, Narita S, Kimura K, Arakawa T, Yamada C, Ito Y, Dohmae N, Fujita K, Ishiwata A, Fushinobu S. Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology. PMID 34735571 DOI: 10.1093/glycob/cwab103   
2021 Azimi F, Azizian H, Najafi M, Khodarahmi G, Saghaei L, Hassanzadeh M, Ghasemi JB, Faramarzi MA, Larijani B, Hassanzadeh F, Mahdavi M. Design, synthesis, biological evaluation, and molecular modeling studies of pyrazole-benzofuran hybrids as new α-glucosidase inhibitor. Scientific Reports. 11: 20776. PMID 34675367 DOI: 10.1038/s41598-021-99899-1   
2021 Li G, Patel K, Zhang Y, Pugmire J, Ding Y, Bruner SD. Structural and biochemical studies of an iterative ribosomal peptide macrocyclase. Proteins. PMID 34664307 DOI: 10.1002/prot.26264   
2021 Legru A, Verdirosa F, Hernandez JF, Tassone G, Sannio F, Benvenuti M, Conde PA, Bossis G, Thomas CA, Crowder MW, Dillenberger M, Becker K, Pozzi C, Mangani S, Docquier JD, et al. 1,2,4-Triazole-3-thione compounds with a 4-ethyl alkyl/aryl sulfide substituent are broad-spectrum metallo-β-lactamase inhibitors with re-sensitization activity. European Journal of Medicinal Chemistry. 226: 113873. PMID 34626878 DOI: 10.1016/j.ejmech.2021.113873   
2021 Guimarães AVF, Frota NF, Lourenzoni MR. Molecular dynamics simulations of human L-asparaginase1: Insights into structural determinants of enzymatic activity. Journal of Molecular Graphics & Modelling. 109: 108007. PMID 34461521 DOI: 10.1016/j.jmgm.2021.108007   
2021 Kang JM, Lê HG, Na BK, Yoo WG. pH-Dependent Structural Dynamics of Cathepsin D-Family Aspartic Peptidase of . Pathogens (Basel, Switzerland). 10. PMID 34578162 DOI: 10.3390/pathogens10091128   
2021 Campomizzi CS, Ghanatios GE, Estrada DF. F-NMR reveals substrate specificity of CYP121A1 in Mycobacterium tuberculosis. The Journal of Biological Chemistry. 101287. PMID 34634307 DOI: 10.1016/j.jbc.2021.101287   
2021 Kshirsagar RR, Gadekar PK, Khedkar VM, Vijayakumar V. Design, Synthesis, and the Effects of ()-9-Oxooctadec-10-en-12-ynoic Acid Analogues to Promote Glucose Uptake. Acs Omega. 6: 24118-24127. PMID 34568690 DOI: 10.1021/acsomega.1c03600   
2021 Nakamura S, Nihira T, Kurata R, Nakai H, Funane K, Park EY, Miyazaki T. Structure of a bacterial α-1,2-glucosidase defines mechanisms of hydrolysis and substrate specificity in GH65 family hydrolases. The Journal of Biological Chemistry. 101366. PMID 34728215 DOI: 10.1016/j.jbc.2021.101366   
2021 Ghosh AK, Shahabi D, Yadav M, Kovela S, Anson BJ, Lendy EK, Bonham C, Sirohi D, Brito-Sierra CA, Hattori SI, Kuhn R, Mitsuya H, Mesecar AD. Chloropyridinyl Esters of Nonsteroidal Anti-Inflammatory Agents and Related Derivatives as Potent SARS-CoV-2 3CL Protease Inhibitors. Molecules (Basel, Switzerland). 26. PMID 34641337 DOI: 10.3390/molecules26195782   
2021 Park W, Son HF, Lee D, Kim IK, Kim KJ. Crystal Structure and Functional Characterization of the Bifunctional -(5'-Phosphoribosyl)anthranilate Isomerase-indole-3-glycerol-phosphate Synthase from . Journal of Agricultural and Food Chemistry. PMID 34657425 DOI: 10.1021/acs.jafc.1c05132   
2021 Guo J, Wang Y, Zhang X, Gao W, Cai Z, Hong T, Man Z, Qing Q. Improvement of the Catalytic Activity of Chitosanase BsCsn46A from by Site-Saturation Mutagenesis of Proline121. Journal of Agricultural and Food Chemistry. PMID 34590486 DOI: 10.1021/acs.jafc.1c04206   
2021 Arif T, Currie MJ, Dobson RCJ, Newson HL, Poonthiyil V, Fairbanks AJ, North RA, Rendle PM. Synthesis of N-acetylmannosamine-6-phosphate derivatives to investigate the mechanism of N-acetylmannosamine-6-phosphate 2-epimerase. Carbohydrate Research. 510: 108445. PMID 34607125 DOI: 10.1016/j.carres.2021.108445   
2021 Sadiq Butt AR, Abbasi MA, Rehman AU, Siddiqui SZ, Raza H, Hassan M, Shah SAA, Seo SY. Synthesis, Kinetics, Binding Conformations and Structure-activity Relationship of Potent Tyrosinase Inhibitors: Aralkylated 2-aminothiazole-ethyltriazole Hybrids. Iranian Journal of Pharmaceutical Research : Ijpr. 20: 206-228. PMID 34567157 DOI: 10.22037/ijpr.2020.15521.13145   
2021 Zhang TJ, Tu S, Zhang X, Wang QY, Hu SS, Zhang Y, Zhang ZH, Wang ZR, Meng FH. Amide-based xanthine oxidase inhibitors bearing an N-(1-alkyl-3-cyano-1H-indol-5-yl) moiety: Design, synthesis and structure-activity relationship investigation. Bioorganic Chemistry. 117: 105417. PMID 34673452 DOI: 10.1016/j.bioorg.2021.105417   
2021 Pan X, Yang J, Xie P, Zhang J, Ke F, Guo X, Liang M, Liu L, Wang Q, Gao X. Enhancement of Activity and Thermostability of Keratinase From CCTCC AB2013184 by Directed Evolution With Noncanonical Amino Acids. Frontiers in Bioengineering and Biotechnology. 9: 770907. PMID 34733836 DOI: 10.3389/fbioe.2021.770907   
2021 Afzal O, Altamimi ASA, Shahroz MM, Sharma HK, Riadi Y, Hassan MQ. Analgesic and Anticancer Activity of Benzoxazole Clubbed 2-Pyrrolidinones as Novel Inhibitors of Monoacylglycerol Lipase. Molecules (Basel, Switzerland). 26. PMID 33924091 DOI: 10.3390/molecules26082389   
2021 Wang Y, Hanrahan G, Azar FA, Mittermaier A. Binding interactions in a kinase active site modulate background ATP hydrolysis. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140720. PMID 34597835 DOI: 10.1016/j.bbapap.2021.140720   
2021 Mishra A, Khan WH, Rathore AS. Synergistic Effects of Natural Compounds Toward Inhibition of SARS-CoV-2 3CL Protease. Journal of Chemical Information and Modeling. PMID 34694807 DOI: 10.1021/acs.jcim.1c00994   
2021 Sharma V, Pugazhenthi G, Vasanth D. Production and characterization of a novel thermostable laccase from Bacillus licheniformis VNQ and its application in synthesis of bioactive 1,4-naphthoquinones. Journal of Bioscience and Bioengineering. PMID 34629297 DOI: 10.1016/j.jbiosc.2021.09.008   
2021 Thissera B, Sayed AM, Hassan MHA, Abdelwahab SF, Amaeze N, Semler VT, Alenezi FN, Yaseen M, Alhadrami HA, Belbahri L, Rateb ME. Bioguided Isolation of Cyclopenin Analogues as Potential SARS-CoV-2 M Inhibitors from TDPEF34. Biomolecules. 11. PMID 34572579 DOI: 10.3390/biom11091366   
2021 Chen Y, Zhang D, Zhang X, Wang Z, Liu CF, Tam JP. Site-Specific Protein Modifications by an Engineered Asparaginyl Endopeptidase from . Frontiers in Chemistry. 9: 768854. PMID 34746098 DOI: 10.3389/fchem.2021.768854   
2021 Pokhrel S, Bouback TA, Samad A, Nur SM, Alam R, Abdullah-Al-Mamun M, Nain Z, Imon RR, Talukder MEK, Tareq MMI, Hossen MS, Karpiński TM, Ahammad F, Qadri I, Rahman MS. Spike protein recognizer receptor ACE2 targeted identification of potential natural antiviral drug candidates against SARS-CoV-2. International Journal of Biological Macromolecules. PMID 34592225 DOI: 10.1016/j.ijbiomac.2021.09.146   
2021 Zhang JH, Xie HX, Li Y, Wang KM, Song Z, Zhu KK, Fang L, Zhang J, Jiang CS. Design, synthesis and biological evaluation of novel (E)-2-benzylidene-N-(3-cyano-4,5,6,7-tetrahydrobenzo[b]thiophen-2-yl)hydrazine-1-carboxamide derivatives as α-glucosidase inhibitors. Bioorganic & Medicinal Chemistry Letters. 128413. PMID 34634473 DOI: 10.1016/j.bmcl.2021.128413   
2021 Wang L, Sun P, Yang Y, Qiao H, Tian H, Wu D, Yang S, Yuan Q, Wang J. Preparation of ZIF@ADH/NAD-MSN/LDH Core Shell Nanocomposites for the Enhancement of Coenzyme Catalyzed Double Enzyme Cascade. Nanomaterials (Basel, Switzerland). 11. PMID 34578486 DOI: 10.3390/nano11092171   
2021 Khobragade TP, Sarak S, Pagar AD, Jeon H, Giri P, Yun H. Synthesis of Sitagliptin Intermediate by a Multi-Enzymatic Cascade System Using Lipase and Transaminase With Benzylamine as an Amino Donor. Frontiers in Bioengineering and Biotechnology. 9: 757062. PMID 34692666 DOI: 10.3389/fbioe.2021.757062   
2021 Wang Y, Wang J, Wang S, Cao Z, Gu D, Wang Y, Tian J, Yang Y. An efficient method based on an inhibitor-enzyme complex to screen an active compound against lipase from . Food & Function. PMID 34617090 DOI: 10.1039/d1fo01542g   
2021 Liu Y, Zhang F, Jiang L, Perry JJP, Zhao Z, Liao J. Product inhibition kinetics determinations - Substrate interaction affinity and enzymatic kinetics using one quantitative FRET assay. International Journal of Biological Macromolecules. PMID 34780893 DOI: 10.1016/j.ijbiomac.2021.10.211   
2021 Salvi P, Kumar B, Kamble NU, Hazra A, Majee M. A Conserved NAG motif is critical to the catalytic activity of galactinol synthase, a key regulatory enzyme of RFO biosynthesis. The Biochemical Journal. PMID 34693969 DOI: 10.1042/BCJ20210703   
2021 Battiston CSZ, Ficanha AMM, Oro CED, Dallago RM, Mignoni ML. In Situ Calb Enzyme Immobilization in Mesoporous Material Type MCM-48 Synthesis Using Ionic Solid [CMI]Cl as Structure-Directing Agent. Applied Biochemistry and Biotechnology. PMID 34524635 DOI: 10.1007/s12010-021-03648-z   
2021 Pei X, Wang J, Zheng H, Xiao Q, Wang A, Su W. Catalytically active inclusion bodies (CatIBs) induced by terminally attached self-assembling coiled-coil domains: To enhance the stability of (R)-hydroxynitrile lyase. Enzyme and Microbial Technology. 153: 109915. PMID 34670185 DOI: 10.1016/j.enzmictec.2021.109915   
2021 Mancuso F, De Luca L, Bucolo F, Vrabel M, Angeli A, Capasso C, Supuran CT, Gitto R. 4-Sulfamoylphenylalkylamides as Inhibitors of Carbonic Anhydrases Expressed in Vibrio cholerae. Chemmedchem. PMID 34592052 DOI: 10.1002/cmdc.202100510   
2021 Chirgadze YN, Battaile KP, Likhachev IV, Balabaev NK, Gordon RD, Romanov V, Lin A, Karisch R, Lam R, Ruzanov M, Brazhnikov EV, Pai EF, Neel BG, Chirgadze NY. Signal transfer in human protein tyrosine phosphatase PTP1B from allosteric inhibitor P00058. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 34705594 DOI: 10.1080/07391102.2021.1994879   
2021 Duong TH, Nguyen HT, Nguyen CH, Tran NM, Danova A, Tran TM, Vu-Huynh KL, Musa V, Jutakanoke R, Nguyen NH, Sichaem J. Identification of Highly Potent α-Glucosidase Inhibitors from Artocarpus integer and Molecular Docking Studies. Chemistry & Biodiversity. e2100499. PMID 34761862 DOI: 10.1002/cbdv.202100499   
2021 Hansen AL, Koivisto JM, Simonsen S, Dong Z, Crehuet R, Hansen DK, Willemoës M. Identification of a Catalytic Nucleophile-Activating Network in the endoαAcetylgalactosaminidase of Family GH101. Biochemistry. PMID 34694774 DOI: 10.1021/acs.biochem.1c00596   
2021 Dai L, Chang Z, Yang J, Liu W, Yang Y, Chen CC, Zhang L, Huang JW, Sun Y, Guo RT. Structural investigation of a thermostable 1,2-β-mannobiose phosphorylase from Thermoanaerobacter sp. X-514. Biochemical and Biophysical Research Communications. 579: 54-61. PMID 34587555 DOI: 10.1016/j.bbrc.2021.09.046   
2021 Chan PWY, Chakrabarti N, Ing C, Halgas O, To TKW, Wälti M, Petit AP, Tran C, Savchenko A, Yakunin AF, Edwards EA, Pomès R, Pai EF. Defluorination Capability of l-2-Haloacid Dehalogenases in the HAD-like Hydrolase Superfamily Correlates with Active Site Compactness. Chembiochem : a European Journal of Chemical Biology. PMID 34643018 DOI: 10.1002/cbic.202100414   
2021 Das BK, Chakraborty D. Deciphering the competitive inhibition of dihydropteroate synthase by 8 marcaptoguanine analogs: enhanced potency in phenylsulfonyl fragments. Journal of Biomolecular Structure & Dynamics. 1-20. PMID 34581241 DOI: 10.1080/07391102.2021.1981452   
2021 Keziah SM, Devi CS. Fibrinolytic and ACE Inhibitory Activity of Nattokinase Extracted from Bacillus subtilis VITMS 2: A Strain Isolated from Fermented Milk of Vigna unguiculata. The Protein Journal. 40: 876-890. PMID 34611797 DOI: 10.1007/s10930-021-10023-8   
2021 Wei X, Matsuyama T, Sato H, Yan D, Chan PM, Miyamoto K, Uchiyama M, Matsuda Y. Molecular and Computational Bases for Spirofuranone Formation in Setosusin Biosynthesis. Journal of the American Chemical Society. PMID 34644070 DOI: 10.1021/jacs.1c08336   
2021 Wang X, Duan W, Lin G, Li B, Chen M, Lei F. Synthesis, 3D-QSAR and Molecular Docking Study of Nopol-Based 1,2,4-Triazole-Thioether Compounds as Potential Antifungal Agents. Frontiers in Chemistry. 9: 757584. PMID 34765587 DOI: 10.3389/fchem.2021.757584   
2021 Kim HJ, Li XJ, Kim DC, Kim TK, Sohn JH, Kwon H, Lee D, Kim YC, Yim JH, Oh H. PTP1B Inhibitory Secondary Metabolites from an Antarctic Fungal Strain sp. SF-7394. Molecules (Basel, Switzerland). 26. PMID 34576982 DOI: 10.3390/molecules26185505   
2021 Dobie C, Montgomery AP, Szabo R, Yu H, Skropeta D. Synthesis and biological evaluation of selective phosphonate-bearing 1,2,3-triazole-linked sialyltransferase inhibitors. Rsc Medicinal Chemistry. 12: 1680-1689. PMID 34778769 DOI: 10.1039/d1md00079a   
2021 Ni G, Zhong L, Xia C, Zhang L, Dai L, Chen R, Zhao Y, Wang F. Phenylalanine 314 is essential for the activity of maltogenic amylase from Corallococcus sp. EGB. Biotechnology and Applied Biochemistry. PMID 34775631 DOI: 10.1002/bab.2282   
2021 Wang Y, Liu M, Li J, Wei H, Zhang K. Experimental and in silico studies of competitive inhibition of family GH10 Aspergillus fumigatus xylanase A by Oryza sativa xylanase inhibitor protein. International Journal of Biological Macromolecules. PMID 34742846 DOI: 10.1016/j.ijbiomac.2021.10.201   
2021 Rocha K, Magallon J, Reeves C, Phan K, Vu P, Oakley-Havens CL, Kwan S, Ramirez MS, LaVoi T, Donow H, Chapagain P, Santos R, Pinilla C, Giulianotti MA, Tolmasky ME. Inhibition of Aminoglycoside 6'--acetyltransferase Type Ib (AAC(6')-Ib): Structure-Activity Relationship of Substituted Pyrrolidine Pentamine Derivatives as Inhibitors. Biomedicines. 9. PMID 34572404 DOI: 10.3390/biomedicines9091218