Jeremy Mark Berg - Publications

structural and functional roles that metal ions, especially zinc, have in proteins

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Stern AM, Schurdak ME, Bahar I, Berg JM, Taylor DL. A Perspective on Implementing a Quantitative Systems Pharmacology Platform for Drug Discovery and the Advancement of Personalized Medicine. Journal of Biomolecular Screening. PMID 26962875 DOI: 10.1177/1087057116635818  0.88
2016 Berg JM, Berg WA. No myth: Benefits of breast screening. Nature. 529: 283. PMID 26791708 DOI: 10.1038/529283b  0.88
2013 Berg JM. Scientific approaches to science policy. Molecular Biology of the Cell. 24: 3273-4. PMID 24174459 DOI: 10.1091/mbc.E13-07-0400  0.88
2013 Coller-Monarez S, Groseclose SL, Kurilla MG, Berg JM. High priority preparedness research and its support. Journal of Public Health Management and Practice : Jphmp. 19: S9-11. PMID 23903401 DOI: 10.1097/PHH.0b013e3182972287  0.88
2012 Namuswe F, Berg JM. Secondary interactions involving zinc-bound ligands: roles in structural stabilization and macromolecular interactions. Journal of Inorganic Biochemistry. 111: 146-9. PMID 22196020 DOI: 10.1016/j.jinorgbio.2011.10.018  0.88
2011 Wang R, Ilangovan U, Leal BZ, Robinson AK, Amann BT, Tong CV, Berg JM, Hinck AP, Kim CA. Identification of nucleic acid binding residues in the FCS domain of the polycomb group protein polyhomeotic. Biochemistry. 50: 4998-5007. PMID 21351738 DOI: 10.1021/bi101487s  0.88
2010 Guerrerio AL, Berg JM. Design of single-stranded nucleic acid binding peptides based on nucleocapsid CCHC-box zinc-binding domains. Journal of the American Chemical Society. 132: 9638-43. PMID 20586464 DOI: 10.1021/ja910942v  0.92
2010 Jantz D, Berg JM. Probing the DNA-binding affinity and specificity of designed zinc finger proteins. Biophysical Journal. 98: 852-60. PMID 20197039 DOI: 10.1016/j.bpj.2009.11.021  0.48
2010 Ghosh D, Berg JM. A proteome-wide perspective on peroxisome targeting signal 1(PTS1)-Pex5p affinities. Journal of the American Chemical Society. 132: 3973-9. PMID 20178365 DOI: 10.1021/ja9109049  0.88
2009 Davis AM, Berg JM. Homodimerization and heterodimerization of minimal zinc(II)-binding-domain peptides of T-cell proteins CD4, CD8alpha, and Lck. Journal of the American Chemical Society. 131: 11492-7. PMID 19624124 DOI: 10.1021/ja9028928  0.88
2008 Martin GG, Hostetler HA, McIntosh AL, Tichy SE, Williams BJ, Russell DH, Berg JM, Spencer TA, Ball J, Kier AB, Schroeder F. Structure and function of the sterol carrier protein-2 N-terminal presequence. Biochemistry. 47: 5915-34. PMID 18465878 DOI: 10.1021/bi800251e  0.88
2007 Maynard EL, Berg JM. Quantitative analysis of peroxisomal targeting signal type-1 binding to wild-type and pathogenic mutants of Pex5p supports an affinity threshold for peroxisomal protein targeting. Journal of Molecular Biology. 368: 1259-66. PMID 17399738 DOI: 10.1016/j.jmb.2007.03.005  0.88
2006 Alexander DF, Alving BM, Battey JF, Berg JM, Collins FS, Fauci AS, Gallin JI, Grady PA, Hodes RJ, Hrynkow SH, Insel TR, Jones JF, Katz SI, Landis SC, Li TK, et al. Response to: "Rescuing the NIH before it is too late". The Journal of Clinical Investigation. 116: 1462-3. PMID 16648877 DOI: 10.1172/JCI28894  0.88
2004 Blasie CA, Berg JM. Entropy-enthalpy compensation in ionic interactions probed in a zinc finger peptide. Biochemistry. 43: 10600-4. PMID 15301557 DOI: 10.1021/bi0363230  1
2004 Maynard EL, Gatto GJ, Berg JM. Pex5p binding affinities for canonical and noncanonical PTS1 peptides. Proteins. 55: 856-61. PMID 15146484 DOI: 10.1002/prot.20112  0.88
2004 Jantz D, Berg JM. Reduction in DNA-binding affinity of Cys2His2 zinc finger proteins by linker phosphorylation. Proceedings of the National Academy of Sciences of the United States of America. 101: 7589-93. PMID 15128941 DOI: 10.1073/pnas.0402191101  0.48
2004 Guerrerio AL, Berg JM. Metal ion affinities of the zinc finger domains of the metal responsive element-binding transcription factor-1 (MTF1). Biochemistry. 43: 5437-44. PMID 15122909 DOI: 10.1021/bi0358418  0.92
2004 Jantz D, Amann BT, Gatto GJ, Berg JM. The design of functional DNA-binding proteins based on zinc finger domains. Chemical Reviews. 104: 789-99. PMID 14871141 DOI: 10.1021/cr020603o  0.88
2004 Berkovits-Cymet HJ, Amann BT, Berg JM. Solution structure of a CCHHC domain of neural zinc finger factor-1 and its implications for DNA binding. Biochemistry. 43: 898-903. PMID 14744132 DOI: 10.1021/bi035159d  0.64
2003 Blasie CA, Berg JM. Kinetics and thermodynamics of copper(II) binding to apoazurin. Journal of the American Chemical Society. 125: 6866-7. PMID 12783529 DOI: 10.1021/ja035333l  1
2003 Jantz D, Berg JM. Expanding the DNA-recognition repertoire for zinc finger proteins beyond 20 amino acids. Journal of the American Chemical Society. 125: 4960-1. PMID 12708829 DOI: 10.1021/ja029671i  0.48
2003 Michel SL, Guerrerio AL, Berg JM. Selective RNA binding by a single CCCH zinc-binding domain from Nup475 (Tristetraprolin). Biochemistry. 42: 4626-30. PMID 12705825 DOI: 10.1021/bi034073h  0.96
2003 Gatto GJ, Berg JM. Nonrandom tripeptide sequence distributions at protein carboxyl termini. Genome Research. 13: 617-23. PMID 12671002 DOI: 10.1101/gr.667603  0.88
2003 Gatto GJ, Maynard EL, Guerrerio AL, Geisbrecht BV, Gould SJ, Berg JM. Correlating structure and affinity for PEX5:PTS1 complexes. Biochemistry. 42: 1660-6. PMID 12578380 DOI: 10.1021/bi027034z  0.88
2003 Amann BT, Worthington MT, Berg JM. A Cys3His zinc-binding domain from Nup475/tristetraprolin: a novel fold with a disklike structure. Biochemistry. 42: 217-21. PMID 12515557 DOI: 10.1021/bi026988m  0.88
2003 Harper CC, Berg JM, Gould SJ. PEX5 binds the PTS1 independently of Hsp70 and the peroxin PEX12. The Journal of Biological Chemistry. 278: 7897-901. PMID 12456682 DOI: 10.1074/jbc.M206651200  0.88
2002 Blasie CA, Berg JM. Structure-based thermodynamic analysis of a coupled metal binding-protein folding reaction involving a zinc finger peptide. Biochemistry. 41: 15068-73. PMID 12475256  1
2002 Michel SL, Berg JM. Building a metal binding domain, one half at a time. Chemistry & Biology. 9: 667-8. PMID 12079775 DOI: 10.1016/S1074-5521(02)00160-6  0.96
2002 Jantz D, Berg JM. Binding assays get into the groove. Nature Biotechnology. 20: 126-7. PMID 11821854 DOI: 10.1038/nbt0202-126  0.48
2001 Berg JM, Lorsch JR. Mechanism of ribosomal peptide bond formation. Science (New York, N.Y.). 291: 203. PMID 11406869  0.88
2001 Blasie CA, Berg JM. Toward ligand identification within a CCHHC zinc-binding domain from the NZF/MyT1 family. Inorganic Chemistry. 39: 348-51. PMID 11272545 DOI: 10.1021/IC990913Y  0.84
2000 Gatto GJ, Geisbrecht BV, Gould SJ, Berg JM. A proposed model for the PEX5-peroxisomal targeting signal-1 recognition complex. Proteins. 38: 241-6. PMID 10713985 DOI: 10.1002/(SICI)1097-0134(20000215)38:3<241::AID-PROT1>3.0.CO;2-1  0.88
1999 Berkovits HJ, Berg JM. Metal and DNA binding properties of a two-domain fragment of neural zinc finger factor 1, a CCHC-type zinc binding protein. Biochemistry. 38: 16826-30. PMID 10606515  1
1998 Clarke ND, Berg JM. Zinc fingers in Caenorhabditis elegans: Finding families and probing pathways Science. 282: 2018-2022. PMID 9851917 DOI: 10.1126/science.282.5396.2018  0.88
1997 Kim YG, Shi Y, Berg JM, Chandrasegaran S. Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions. Gene. 203: 43-9. PMID 9426005 DOI: 10.1016/S0378-1119(97)00489-7  1
1997 Berg JM, Godwin HA. Lessons from zinc-binding peptides. Annual Review of Biophysics and Biomolecular Structure. 26: 357-71. PMID 9241423 DOI: 10.1146/annurev.biophys.26.1.357  0.88
1997 Blasie CA, Berg JM. Electrostatic interactions across a beta-sheet. Biochemistry. 36: 6218-22. PMID 9166794 DOI: 10.1021/bi962805i  0.64
1996 Worthington MT, Amann BT, Nathans D, Berg JM. Metal binding properties and secondary structure of the zinc-binding domain of Nup475. Proceedings of the National Academy of Sciences of the United States of America. 93: 13754-9. PMID 8943007 DOI: 10.1073/pnas.93.24.13754  0.88
1996 Shi Y, Berg JM. DNA unwinding induced by zinc finger protein binding. Biochemistry. 35: 3845-8. PMID 8620008 DOI: 10.1021/bi952384p  1
1996 Berg JM, Shi Y. The galvanization of biology: a growing appreciation for the roles of zinc. Science (New York, N.Y.). 271: 1081-5. PMID 8599083  1
1995 Shi Y, Berg JM. A direct comparison of the properties of natural and designed zinc-finger proteins. Chemistry & Biology. 2: 83-9. PMID 9383408  1
1995 Kim CA, Berg JM. Serine at Position 2 in the DNA Recognition Helix of a Cys2-His2Zinc Finger Peptide is Not, in General, Responsible for Base Recognition Journal of Molecular Biology. 252: 1-5. PMID 7666422 DOI: 10.1006/jmbi.1994.0468  0.88
1995 Kalish JE, Theda C, Morrell JC, Berg JM, Gould SJ. Formation of the peroxisome lumen is abolished by loss of Pichia pastoris Pas7p, a zinc-binding integral membrane protein of the peroxisome. Molecular and Cellular Biology. 15: 6406-19. PMID 7565793  0.88
1995 Shi Y, Berg JM. Specific DNA-RNA hybrid binding by zinc finger proteins. Science (New York, N.Y.). 268: 282-4. PMID 7536342  1
1994 Desjarlais JR, Berg JM. Length-encoded multiplex binding site determination: application to zinc finger proteins. Proceedings of the National Academy of Sciences of the United States of America. 91: 11099-103. PMID 7972017 DOI: 10.1073/pnas.91.23.11099  0.88
1993 Shi Y, Beger RD, Berg JM. Metal binding properties of single amino acid deletion mutants of zinc finger peptides: studies using cobalt(II) as a spectroscopic probe. Biophysical Journal. 64: 749-53. PMID 8471726 DOI: 10.1016/S0006-3495(93)81435-8  1
1993 Desjarlais JR, Berg JM. Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 90: 2256-60. PMID 8460130  0.88
1993 Dintzis HM, Symer DE, Dintzis RZ, Zawadzke LE, Berg JM. A comparison of the immunogenicity of a pair of enantiomeric proteins Proteins: Structure, Function and Genetics. 16: 306-308. PMID 8346194  0.88
1992 Desjarlais JR, Berg JM. Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach. Proteins. 12: 101-4. PMID 1603798 DOI: 10.1002/prot.340120202  0.88
1992 Michael SF, Kilfoil VJ, Schmidt MH, Amann BT, Berg JM. Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide. Proceedings of the National Academy of Sciences of the United States of America. 89: 4796-800. PMID 1594580  0.64
1992 Desjarlais JR, Berg JM. Toward rules relating zinc finger protein sequences and DNA binding site preferences. Proceedings of the National Academy of Sciences of the United States of America. 89: 7345-9. PMID 1502144  0.88
1987 Frankel AD, Berg JM, Pabo CO. Metal-dependent folding of a single zinc finger from transcription factor IIIA. Proceedings of the National Academy of Sciences of the United States of America. 84: 4841-5. PMID 3474629 DOI: 10.1073/pnas.84.14.4841  0.88
1985 Jordan SR, Whitcombe TV, Berg JM, Pabo CO. Systematic variation in DNA length yields highly ordered repressor-operator cocrystals. Science (New York, N.Y.). 230: 1383-5. PMID 3906896 DOI: 10.1126/SCIENCE.3906896  0.88
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