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Michael Rape, Ph.D. - Publications

Affiliations: 
Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
Area:
Cell cycle, Ubiquitin
Website:
http://mcb.berkeley.edu/index.php?option=com_mcbfaculty&name=rapem

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kolla S, Ye M, Mark KG, Rapé M. Assembly and function of branched ubiquitin chains. Trends in Biochemical Sciences. PMID 35508449 DOI: 10.1016/j.tibs.2022.04.003  0.646
2022 Akopian D, McGourty CA, Rapé M. Co-adaptor driven assembly of a CUL3 E3 ligase complex. Molecular Cell. 82: 585-597.e11. PMID 35120648 DOI: 10.1016/j.molcel.2022.01.004  0.631
2021 Jevtić P, Haakonsen DL, Rapé M. An E3 ligase guide to the galaxy of small-molecule-induced protein degradation. Cell Chemical Biology. PMID 33891901 DOI: 10.1016/j.chembiol.2021.04.002  0.308
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078  0.599
2021 Wolpaw AJ, Bayliss R, Büchel G, Dang CV, Eilers M, Gustafson WC, Hansen GM, Jura N, Knapp S, Lemmon MA, Levens D, Maris JM, Marmorstein R, Metallo SJ, Park JR, ... ... Rape M, et al. Drugging the 'undruggable' MYCN oncogenic transcription factor: Overcoming previous obstacles to impact childhood cancers. Cancer Research. PMID 33509943 DOI: 10.1158/0008-5472.CAN-20-3108  0.552
2020 Manford AG, Rodríguez-Pérez F, Shih KY, Shi Z, Berdan CA, Choe M, Titov DV, Nomura DK, Rape M. A Cellular Mechanism to Detect and Alleviate Reductive Stress. Cell. PMID 32941802 DOI: 10.1016/J.Cell.2020.08.034  0.302
2020 Mena EL, Jevtić P, Greber BJ, Gee CL, Lew BG, Akopian D, Nogales E, Kuriyan J, Rape M. Structural basis for dimerization quality control. Nature. PMID 32814905 DOI: 10.1038/S41586-020-2636-7  0.59
2020 Oh E, Mark KG, Mocciaro A, Watson ER, Prabu JR, Cha DD, Kampmann M, Gamarra N, Zhou CY, Rape M. Gene expression and cell identity controlled by anaphase-promoting complex. Nature. PMID 32076268 DOI: 10.1038/S41586-020-2034-1  0.685
2020 Baur R, Rape M. Getting Close: Insight into the Structure and Function of K11/K48-Branched Ubiquitin Chains. Structure (London, England : 1993). 28: 1-3. PMID 31951536 DOI: 10.1016/J.Str.2019.12.004  0.358
2019 Engström P, Burke TP, Mitchell G, Ingabire N, Mark KG, Golovkine G, Iavarone AT, Rape M, Cox JS, Welch MD. Evasion of autophagy mediated by Rickettsia surface protein OmpB is critical for virulence. Nature Microbiology. PMID 31611642 DOI: 10.1038/S41564-019-0583-6  0.624
2019 Pao KC, Rape M. Tug of War in the Xenophagy World. Trends in Cell Biology. PMID 31471010 DOI: 10.1016/J.Tcb.2019.08.001  0.316
2019 Haakonsen DL, Rape M. Branching Out: Improved Signaling by Heterotypic Ubiquitin Chains. Trends in Cell Biology. PMID 31300189 DOI: 10.1016/J.Tcb.2019.06.003  0.425
2018 Mena EL, Kjolby RAS, Saxton RA, Werner A, Lew BG, Boyle JM, Harland R, Rape M. Dimerization quality control ensures neuronal development and survival. Science (New York, N.Y.). PMID 30190310 DOI: 10.1126/Science.Aap8236  0.39
2018 Oh E, Akopian D, Rape M. Principles of Ubiquitin-Dependent Signaling. Annual Review of Cell and Developmental Biology. PMID 30110556 DOI: 10.1146/Annurev-Cellbio-100617-062802  0.615
2018 Werner A, Baur R, Teerikorpi N, Kaya DU, Rape M. Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions. Elife. 7. PMID 29999490 DOI: 10.7554/Elife.35407  0.425
2018 Cappell SD, Mark KG, Garbett D, Pack LR, Rape M, Meyer T. EMI1 switches from being a substrate to an inhibitor of APC/C to start the cell cycle. Nature. PMID 29875408 DOI: 10.1038/S41586-018-0199-7  0.657
2018 Werner A, Baur R, Teerikorpi N, Kaya DU, Rape M. Author response: Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions Elife. DOI: 10.7554/Elife.35407.020  0.316
2017 Yau RG, Doerner K, Castellanos ER, Haakonsen DL, Werner A, Wang N, Yang XW, Martinez-Martin N, Matsumoto ML, Dixit VM, Rape M. Assembly and Function of Heterotypic Ubiquitin Chains in Cell-Cycle and Protein Quality Control. Cell. PMID 29033132 DOI: 10.1016/J.Cell.2017.09.040  0.46
2017 Rape M. Ubiquitylation at the crossroads of development and disease. Nature Reviews. Molecular Cell Biology. PMID 28928488 DOI: 10.1038/Nrm.2017.83  0.412
2017 Werner A, Manford AG, Rape M. Ubiquitin-Dependent Regulation of Stem Cell Biology. Trends in Cell Biology. PMID 28528988 DOI: 10.1016/J.Tcb.2017.04.002  0.363
2017 Akopian D, Rape M. Conducting the finale of DNA replication. Genes & Development. 31: 226-227. PMID 28270514 DOI: 10.1101/Gad.297184.117  0.571
2017 Roberts AM, Miyamoto DK, Huffman TR, Bateman LA, Ives AN, Heslin MJ, Akopian D, Contreras CM, Rape M, Skibola CF, Nomura DK. Chemoproteomic Screening of Covalent Ligands Reveals UBA5 as a Novel Pancreatic Cancer Target. Acs Chemical Biology. PMID 28186401 DOI: 10.1021/Acschembio.7B00020  0.564
2017 Das T, Park JK, Park J, Kim E, Rape M, Kim EE, Song EJ. USP15 regulates dynamic protein-protein interactions of the spliceosome through deubiquitination of PRP31. Nucleic Acids Research. PMID 28088760 DOI: 10.1093/Nar/Gkw1365  0.417
2016 McGourty CA, Akopian D, Walsh C, Gorur A, Werner A, Schekman R, Bautista D, Rape M. Regulation of the CUL3 Ubiquitin Ligase by a Calcium-Dependent Co-adaptor. Cell. 167: 525-538.e14. PMID 27716508 DOI: 10.1016/J.Cell.2016.09.026  0.587
2016 Yau R, Rape M. The increasing complexity of the ubiquitin code. Nature Cell Biology. 18: 579-86. PMID 27230526 DOI: 10.1038/Ncb3358  0.414
2016 Schaletzky J, Rape M. Getting a Grip on Microtubules. Cell. 164: 836-7. PMID 26919420 DOI: 10.1016/J.Cell.2016.02.016  0.343
2016 Lorenz S, Bhattacharyya M, Feiler C, Rape M, Kuriyan J. Crystal Structure of a Ube2S-Ubiquitin Conjugate. Plos One. 11: e0147550. PMID 26828794 DOI: 10.1371/Journal.Pone.0147550  0.382
2016 Craney A, Kelly A, Jia L, Fedrigo I, Yu H, Rape M. Control of APC/C-dependent ubiquitin chain elongation by reversible phosphorylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26811472 DOI: 10.1073/Pnas.1522423113  0.457
2016 Sommer T, Hoppe T, Rape M. Stefan Jentsch (1955–2016) Cell. 167: 1667-1668. DOI: 10.1016/J.Cell.2016.11.057  0.4
2015 Manford AG, Rape M. Better Safe than Sorry: Interlinked Feedback Loops for Robust Mitophagy. Molecular Cell. 60: 1-2. PMID 26431022 DOI: 10.1016/J.Molcel.2015.09.016  0.302
2015 Werner A, Iwasaki S, McGourty CA, Medina-Ruiz S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M. Cell-fate determination by ubiquitin-dependent regulation of translation. Nature. 525: 523-7. PMID 26399832 DOI: 10.1038/Nature14978  0.417
2014 Kelly A, Wickliffe KE, Song L, Fedrigo I, Rape M. Ubiquitin chain elongation requires E3-dependent tracking of the emerging conjugate. Molecular Cell. 56: 232-45. PMID 25306918 DOI: 10.1016/J.Molcel.2014.09.010  0.762
2014 Meyer HJ, Rape M. Enhanced protein degradation by branched ubiquitin chains. Cell. 157: 910-21. PMID 24813613 DOI: 10.1016/J.Cell.2014.03.037  0.51
2014 Song L, Craney A, Rape M. Microtubule-dependent regulation of mitotic protein degradation. Molecular Cell. 53: 179-92. PMID 24462202 DOI: 10.1016/J.Molcel.2013.12.022  0.464
2013 Craney A, Rape M. Dynamic regulation of ubiquitin-dependent cell cycle control. Current Opinion in Cell Biology. 25: 704-10. PMID 23890701 DOI: 10.1016/J.Ceb.2013.07.004  0.435
2013 Lorenz S, Cantor AJ, Rape M, Kuriyan J. Macromolecular juggling by ubiquitylation enzymes. Bmc Biology. 11: 65. PMID 23800009 DOI: 10.1186/1741-7007-11-65  0.407
2013 McGourty CA, Rape M. Cullin' PLK1 from kinetochores. Nature Cell Biology. 15: 347-8. PMID 23548928 DOI: 10.1038/Ncb2722  0.317
2013 Williamson A, Werner A, Rape M. The Colossus of ubiquitylation: decrypting a cellular code. Molecular Cell. 49: 591-600. PMID 23438855 DOI: 10.1016/J.Molcel.2013.01.028  0.61
2012 Komander D, Rape M. The ubiquitin code. Annual Review of Biochemistry. 81: 203-29. PMID 22524316 DOI: 10.1146/Annurev-Biochem-060310-170328  0.395
2012 Jin L, Pahuja KB, Wickliffe KE, Gorur A, Baumgärtel C, Schekman R, Rape M. Ubiquitin-dependent regulation of COPII coat size and function. Nature. 482: 495-500. PMID 22358839 DOI: 10.1038/Nature10822  0.729
2012 Mocciaro A, Rape M. Emerging regulatory mechanisms in ubiquitin-dependent cell cycle control. Journal of Cell Science. 125: 255-63. PMID 22357967 DOI: 10.1242/Jcs.091199  0.513
2012 Newton K, Matsumoto ML, Ferrando RE, Wickliffe KE, Rape M, Kelley RF, Dixit VM. Using linkage-specific monoclonal antibodies to analyze cellular ubiquitylation. Methods in Molecular Biology (Clifton, N.J.). 832: 185-96. PMID 22350886 DOI: 10.1007/978-1-61779-474-2_13  0.734
2011 Wickliffe KE, Williamson A, Meyer HJ, Kelly A, Rape M. K11-linked ubiquitin chains as novel regulators of cell division. Trends in Cell Biology. 21: 656-63. PMID 21978762 DOI: 10.1016/J.Tcb.2011.08.008  0.804
2011 Williamson A, Banerjee S, Zhu X, Philipp I, Iavarone AT, Rape M. Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Molecular Cell. 42: 744-57. PMID 21700221 DOI: 10.1016/J.Molcel.2011.04.022  0.675
2011 Meyer HJ, Rape M. Processive ubiquitin chain formation by the anaphase-promoting complex. Seminars in Cell & Developmental Biology. 22: 544-50. PMID 21477659 DOI: 10.1016/J.Semcdb.2011.03.009  0.506
2011 Luna-Vargas MP, Faesen AC, van Dijk WJ, Rape M, Fish A, Sixma TK. Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain. Embo Reports. 12: 365-72. PMID 21415856 DOI: 10.1038/Embor.2011.33  0.345
2011 Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M. The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2. Cell. 144: 769-81. PMID 21376237 DOI: 10.1016/J.Cell.2011.01.035  0.778
2011 Song L, Rape M. Substrate-specific regulation of ubiquitination by the anaphase-promoting complex. Cell Cycle (Georgetown, Tex.). 10: 52-6. PMID 21191176 DOI: 10.4161/Cc.10.1.14387  0.476
2010 Rape M. Assembly of k11-linked ubiquitin chains by the anaphase-promoting complex. Sub-Cellular Biochemistry. 54: 107-15. PMID 21222277 DOI: 10.1007/978-1-4419-6676-6_9  0.487
2010 Matsumoto ML, Wickliffe KE, Dong KC, Yu C, Bosanac I, Bustos D, Phu L, Kirkpatrick DS, Hymowitz SG, Rape M, Kelley RF, Dixit VM. K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Molecular Cell. 39: 477-84. PMID 20655260 DOI: 10.1016/J.Molcel.2010.07.001  0.752
2010 Song EJ, Werner SL, Neubauer J, Stegmeier F, Aspden J, Rio D, Harper JW, Elledge SJ, Kirschner MW, Rape M. The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome. Genes & Development. 24: 1434-47. PMID 20595234 DOI: 10.1101/Gad.1925010  0.588
2010 Song L, Rape M. Regulated degradation of spindle assembly factors by the anaphase-promoting complex. Molecular Cell. 38: 369-82. PMID 20471943 DOI: 10.1016/J.Molcel.2010.02.038  0.467
2009 Ye Y, Rape M. Building ubiquitin chains: E2 enzymes at work. Nature Reviews. Molecular Cell Biology. 10: 755-64. PMID 19851334 DOI: 10.1038/Nrm2780  0.456
2009 Williamson A, Wickliffe KE, Mellone BG, Song L, Karpen GH, Rape M. Identification of a physiological E2 module for the human anaphase-promoting complex. Proceedings of the National Academy of Sciences of the United States of America. 106: 18213-8. PMID 19822757 DOI: 10.1073/Pnas.0907887106  0.795
2009 Williamson A, Jin L, Rape M. Preparation of synchronized human cell extracts to study ubiquitination and degradation. Methods in Molecular Biology (Clifton, N.J.). 545: 301-12. PMID 19475397 DOI: 10.1007/978-1-60327-993-2_19  0.638
2009 Rape M. Ubiquitin, infinitely seductive: symposium on the many faces of ubiquitin. Embo Reports. 10: 558-62. PMID 19465892 DOI: 10.1038/Embor.2009.104  0.489
2009 Rape M. A set of surgical chain saws. The Embo Journal. 28: 615-6. PMID 19295498 DOI: 10.1038/Emboj.2009.52  0.344
2009 Wickliffe K, Williamson A, Jin L, Rape M. The multiple layers of ubiquitin-dependent cell cycle control. Chemical Reviews. 109: 1537-48. PMID 19146381 DOI: 10.1021/Cr800414E  0.783
2008 Jin L, Williamson A, Banerjee S, Philipp I, Rape M. Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. Cell. 133: 653-65. PMID 18485873 DOI: 10.1016/J.Cell.2008.04.012  0.678
2008 Song L, Rape M. Reverse the curse--the role of deubiquitination in cell cycle control. Current Opinion in Cell Biology. 20: 156-63. PMID 18346885 DOI: 10.1016/J.Ceb.2008.01.012  0.441
2007 Rape M. Cell cycle: on-time delivery of Plk1 during cytokinesis. Current Biology : Cb. 17: R506-8. PMID 17610829 DOI: 10.1016/J.Cub.2007.04.032  0.312
2007 Reddy SK, Rape M, Margansky WA, Kirschner MW. Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation. Nature. 446: 921-5. PMID 17443186 DOI: 10.1038/Nature05734  0.7
2007 Stegmeier F, Rape M, Draviam VM, Nalepa G, Sowa ME, Ang XL, McDonald ER, Li MZ, Hannon GJ, Sorger PK, Kirschner MW, Harper JW, Elledge SJ. Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities. Nature. 446: 876-81. PMID 17443180 DOI: 10.1038/Nature05694  0.586
2007 Binné UK, Classon MK, Dick FA, Wei W, Rape M, Kaelin WG, Näär AM, Dyson NJ. Retinoblastoma protein and anaphase-promoting complex physically interact and functionally cooperate during cell-cycle exit. Nature Cell Biology. 9: 225-32. PMID 17187060 DOI: 10.1038/Ncb1532  0.473
2007 Stegmeier F, Rape M, Draviam VM, Nalepa G, Sowa ME, Ang XL, McDonald ER, Li MZ, Hannon GJ, Sorger PK, Kirschner MW, Harper JW, Elledge SJ. Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities Nature. 447: 876-881.  0.496
2006 Rape M, Reddy SK, Kirschner MW. The processivity of multiubiquitination by the APC determines the order of substrate degradation. Cell. 124: 89-103. PMID 16413484 DOI: 10.1016/J.Cell.2005.10.032  0.694
2005 Ayad NG, Rankin S, Ooi D, Rape M, Kirschner MW. Identification of ubiquitin ligase substrates by in vitro expression cloning. Methods in Enzymology. 399: 404-14. PMID 16338372 DOI: 10.1016/S0076-6879(05)99028-9  0.563
2005 Jebanathirajah JA, Pittman JL, Thomson BA, Budnik BA, Kaur P, Rape M, Kirschner M, Costello CE, O'Connor PB. Characterization of a new qQq-FTICR mass spectrometer for post-translational modification analysis and top-down tandem mass spectrometry of whole proteins. Journal of the American Society For Mass Spectrometry. 16: 1985-99. PMID 16271296 DOI: 10.1016/J.Jasms.2005.08.008  0.487
2005 Richly H, Rape M, Braun S, Rumpf S, Hoege C, Jentsch S. A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting. Cell. 120: 73-84. PMID 15652483 DOI: 10.1016/J.Cell.2004.11.013  0.673
2004 Rape M, Jentsch S. Productive RUPture: activation of transcription factors by proteasomal processing. Biochimica Et Biophysica Acta. 1695: 209-13. PMID 15571816 DOI: 10.1016/J.Bbamcr.2004.09.022  0.639
2004 Rape M, Kirschner MW. Autonomous regulation of the anaphase-promoting complex couples mitosis to S-phase entry. Nature. 432: 588-95. PMID 15558010 DOI: 10.1038/Nature03023  0.595
2002 Rape M, Jentsch S. Taking a bite: proteasomal protein processing. Nature Cell Biology. 4: E113-6. PMID 11988749 DOI: 10.1038/Ncb0502-E113  0.638
2002 Braun S, Matuschewski K, Rape M, Thoms S, Jentsch S. Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates. The Embo Journal. 21: 615-21. PMID 11847109 DOI: 10.1093/Emboj/21.4.615  0.663
2001 Rape M, Hoppe T, Gorr I, Kalocay M, Richly H, Jentsch S. Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone. Cell. 107: 667-77. PMID 11733065 DOI: 10.1016/S0092-8674(01)00595-5  0.649
2001 Hoppe T, Rape M, Jentsch S. Membrane-bound transcription factors: regulated release by RIP or RUP. Current Opinion in Cell Biology. 13: 344-8. PMID 11343906 DOI: 10.1016/S0955-0674(00)00218-0  0.599
2000 Hoppe T, Matuschewski K, Rape M, Schlenker S, Ulrich HD, Jentsch S. Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing. Cell. 102: 577-86. PMID 11007476 DOI: 10.1016/S0092-8674(00)00080-5  0.732
1998 Scholz C, Mücke M, Rape M, Pecht A, Pahl A, Bang H, Schmid FX. Recognition of protein substrates by the prolyl isomerase trigger factor is independent of proline residues. Journal of Molecular Biology. 277: 723-32. PMID 9533890 DOI: 10.1006/Jmbi.1997.1604  0.35
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