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Year Citation  Score
2019 Sardiu ME, Florens L, Washburn MP. Generating topological protein interaction scores and data visualization with TopS. Methods (San Diego, Calif.). PMID 31476375 DOI: 10.1016/j.ymeth.2019.08.010  0.56
2019 Guillamot M, Ouazia D, Dolgalev I, Yeung ST, Kourtis N, Dai Y, Corrigan K, Zea-Redondo L, Saraf A, Florens L, Washburn MP, Tikhonova AN, Malumbres M, Gong Y, Tsirigos A, et al. The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation. Nature Immunology. PMID 31406379 DOI: 10.1038/s41590-019-0454-6  0.56
2019 Dayebgadoh G, Sardiu ME, Florens L, Washburn MP. Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome. Journal of Proteome Research. PMID 31353912 DOI: 10.1021/acs.jproteome.9b00373  0.56
2019 Cloud V, Thapa A, Morales-Sosa P, Miller T, Miller SA, Holsapple D, Gerhart P, Momtahan E, Jack JL, Leiva E, Rapp SR, Shelton LG, Pierce RA, Martin-Brown S, Florens L, ... Washburn MP, et al. Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization. Elife. 8. PMID 31348003 DOI: 10.7554/eLife.49677  0.56
2019 Palma M, Riffo EN, Suganuma T, Washburn MP, Workman JL, Pincheira R, Castro AF. Identification of a nuclear localization signal and importin beta members mediating NUAK1 nuclear import inhibited by oxidative stress. Journal of Cellular Biochemistry. PMID 31090959 DOI: 10.1002/jcb.28890  0.56
2019 Zhang Y, Wen Z, Washburn MP, Florens L. Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. Journal of Proteome Research. PMID 30884231 DOI: 10.1021/acs.jproteome.9b00036  0.56
2019 Sardiu ME, Gilmore JM, Groppe BD, Dutta A, Florens L, Washburn MP. Topological scoring of protein interaction networks. Nature Communications. 10: 1118. PMID 30850613 DOI: 10.1038/s41467-019-09123-y  0.56
2019 Zhou N, Gutierrez-Uzquiza A, Zheng XY, Chang R, Vogl DT, Garfall AL, Bernabei L, Saraf A, Florens L, Washburn MP, Illendula A, Bushweller JH, Busino L. RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation. Leukemia. PMID 30760870 DOI: 10.1038/s41375-019-0403-2  0.56
2019 Kulkarni RA, Bak DW, Wei D, Bergholtz SE, Briney CA, Shrimp JH, Alpsoy A, Thorpe AL, Bavari AE, Crooks DR, Levy M, Florens L, Washburn MP, Frizzell N, Dykhuizen EC, et al. A chemoproteomic portrait of the oncometabolite fumarate. Nature Chemical Biology. PMID 30718813 DOI: 10.1038/s41589-018-0217-y  0.56
2019 Soffers JHM, Li X, Saraf A, Seidel CW, Florens L, Washburn MP, Abmayr SM, Workman JL. Characterization of a metazoan ADA acetyltransferase complex. Nucleic Acids Research. PMID 30715476 DOI: 10.1093/nar/gkz042  0.56
2018 Jeong YT, Simoneschi D, Keegan S, Melville D, Adler NS, Saraf A, Florens L, Washburn MP, Cavasotto CN, Fenyö D, Cuervo AM, Rossi M, Pagano M. The ULK1-FBXW5-SEC23B nexus controls autophagy. Elife. 7. PMID 30596474 DOI: 10.7554/eLife.42253  0.56
2018 Torres-Zelada EF, Stephenson RE, Alpsoy A, Anderson BD, Swanson SK, Florens L, Dykhuizen EC, Washburn MP, Weake VM. The Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science. PMID 30559249 DOI: 10.1242/jcs.214072  0.56
2018 Choi J, Saraf A, Florens L, Washburn MP, Busino L. PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation. Cell Cycle (Georgetown, Tex.). PMID 30209976 DOI: 10.1080/15384101.2018.1522912  0.56
2018 Banks CAS, Miah S, Adams MK, Eubanks CG, Thornton JL, Florens L, Washburn MP. Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly. Scientific Reports. 8: 13712. PMID 30209338 DOI: 10.1038/s41598-018-32009-w  0.56
2018 Levy MJ, Washburn MP, Florens L. Probing the Sensitivity of the Orbitrap Lumos Mass Spectrometer Using a Standard Reference Protein in a Complex Background. Journal of Proteome Research. PMID 30180573 DOI: 10.1021/acs.jproteome.8b00269  0.56
2018 Li S, Xu C, Fu Y, Lei PJ, Yao Y, Yang W, Zhang Y, Washburn MP, Florens L, Jaiswal M, Wu M, Mohan M. DYRK1A interacts with histone acetyl transferase p300 and CBP and localizes to enhancers. Nucleic Acids Research. PMID 30137413 DOI: 10.1093/nar/gky754  0.56
2018 Gopalan S, Gibbon DM, Banks CAS, Zhang Y, Florens LA, Washburn MP, Dabas P, Sharma N, Seidel CW, Conaway RC, Conaway JW. Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex. Nucleic Acids Research. PMID 30102332 DOI: 10.1093/nar/gky713  0.44
2018 Suganuma T, Swanson SK, Gogol M, Garrett TJ, Conkright-Fincham J, Florens L, Washburn MP, Workman JL. MPTAC Determines APP Fragmentation via Sensing Sulfur Amino Acid Catabolism. Cell Reports. 24: 1585-1596. PMID 30089268 DOI: 10.1016/j.celrep.2018.07.013  0.56
2018 Vitorino FNL, Montoni F, Moreno JN, de Souza BF, Lopes MC, Cordeiro B, Fonseca CS, Gilmore JM, Sardiu MI, Reis MS, Florens LA, Washburn MP, Armelin HA, da Cunha JPC. FGF-2 Antiproliferative Stimulation Induces Proteomic Dynamic Changes and High Expression of fosB and junB in K-Ras-Driven Mouse Tumor Cells. Proteomics. e1800203. PMID 30035358 DOI: 10.1002/pmic.201800203  0.4
2018 Choi J, Lee K, Ingvarsdottir K, Bonasio R, Saraf A, Florens L, Washburn MP, Tadros S, Green MR, Busino L. Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2. Nature Cell Biology. 20: 586-596. PMID 29695787 DOI: 10.1038/s41556-018-0084-5  0.56
2018 Tsui C, Inouye C, Levy M, Lu A, Florens L, Washburn MP, Tjian R. dCas9-targeted locus-specific protein isolation method identifies histone gene regulators. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507191 DOI: 10.1073/pnas.1718844115  0.56
2017 Cheng J, Park DE, Berrios C, White EA, Arora R, Yoon R, Branigan T, Xiao T, Westerling T, Federation A, Zeid R, Strober B, Swanson SK, Florens L, Bradner JE, ... ... Washburn MP, et al. Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis. Plos Pathogens. 13: e1006668. PMID 29028833 DOI: 10.1371/journal.ppat.1006668  0.56
2017 Vilhais-Neto GC, Fournier M, Plassat JL, Sardiu ME, Saraf A, Garnier JM, Maruhashi M, Florens L, Washburn MP, Pourquié O. The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry. Nature Communications. 8: 728. PMID 28959017 DOI: 10.1038/s41467-017-00593-6  0.56
2017 Redwine WB, DeSantis ME, Hollyer I, Htet ZM, Tran PT, Swanson SK, Florens L, Washburn MP, Reck-Peterson SL. The human cytoplasmic dynein interactome reveals novel activators of motility. Elife. 6. PMID 28718761 DOI: 10.7554/eLife.28257  0.56
2017 Kuchay S, Giorgi C, Simoneschi D, Pagan J, Missiroli S, Saraf A, Florens L, Washburn MP, Collazo-Lorduy A, Castillo-Martin M, Cordon-Cardo C, Sebti SM, Pinton P, Pagano M. PTEN counteracts FBXL2 to promote IP3R3- and Ca(2+)-mediated apoptosis limiting tumour growth. Nature. PMID 28614300 DOI: 10.1038/nature22965  0.56
2017 Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465432 DOI: 10.1073/pnas.1700128114  0.56
2017 Donato V, Bonora M, Simoneschi D, Sartini D, Kudo Y, Saraf A, Florens L, Washburn MP, Stadtfeld M, Pinton P, Pagano M. The TDH-GCN5L1-Fbxo15-KBP axis limits mitochondrial biogenesis in mouse embryonic stem cells. Nature Cell Biology. PMID 28319092 DOI: 10.1038/ncb3491  0.56
2017 Sardiu ME, Gilmore JM, Groppe B, Florens L, Washburn MP. Identification of Topological Network Modules in Perturbed Protein Interaction Networks. Scientific Reports. 7: 43845. PMID 28272416 DOI: 10.1038/srep43845  0.56
2017 Dutta A, Sardiu M, Gogol M, Gilmore J, Zhang D, Florens L, Abmayr SM, Washburn MP, Workman JL. Composition and Function of Mutant Swi/Snf Complexes. Cell Reports. 18: 2124-2134. PMID 28249159 DOI: 10.1016/j.celrep.2017.01.058  0.56
2017 Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias FJ. Mediator structure and rearrangements required for holoenzyme formation. Nature. PMID 28241144 DOI: 10.1038/nature21393  0.56
2017 Lee J, Shik Choi E, David Seo H, Kang K, Gilmore JM, Florens L, Washburn MP, Choe J, Workman JL, Lee D. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Nature Communications. 8: 14527. PMID 28218250 DOI: 10.1038/ncomms14527  0.56
2017 Liang K, Volk AG, Haug JS, Marshall SA, Woodfin AR, Bartom ET, Gilmore JM, Florens L, Washburn MP, Sullivan KD, Espinosa JM, Cannova J, Zhang J, Smith ER, Crispino JD, et al. Therapeutic Targeting of MLL Degradation Pathways in MLL-Rearranged Leukemia. Cell. PMID 28065413 DOI: 10.1016/j.cell.2016.12.011  0.56
2016 Dyer JO, Dutta A, Gogol M, Weake VM, Dialynas G, Wu X, Seidel C, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL. Myeloid Leukemia Factor acts in a chaperone complex to regulate transcription factor stability and gene expression. Journal of Molecular Biology. PMID 27984043 DOI: 10.1016/j.jmb.2016.10.026  0.56
2016 Terry-Lorenzo RT, Torres VI, Wagh D, Galaz J, Swanson SK, Florens L, Washburn MP, Waites CL, Gundelfinger ED, Reimer RJ, Garner CC. Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon. Plos One. 11: e0167535. PMID 27907191 DOI: 10.1371/journal.pone.0167535  0.56
2016 Miah S, Banks CA, Adams MK, Florens L, Lukong KE, Washburn MP. Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer. Molecular Biosystems. PMID 27891540 DOI: 10.1039/c6mb00639f  0.56
2016 Lan X, Atanassov BS, Li W, Zhang Y, Florens L, Mohan RD, Galardy PJ, Washburn MP, Workman JL, Dent SY. USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B. Cell Reports. 17: 2382-2393. PMID 27880911 DOI: 10.1016/j.celrep.2016.10.076  0.56
2016 Sato S, Tomomori-Sato C, Tsai KL, Yu X, Sardiu M, Saraf A, Washburn MP, Florens L, Asturias FJ, Conaway RC, Conaway JW. Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme. The Journal of Biological Chemistry. PMID 27821593 DOI: 10.1074/jbc.M116.756098  0.56
2016 Brannan KW, Jin W, Huelga SC, Banks CA, Gilmore JM, Florens L, Washburn MP, Van Nostrand EL, Pratt GA, Schwinn MK, Daniels DL, Yeo GW. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes. Molecular Cell. PMID 27720645 DOI: 10.1016/j.molcel.2016.09.003  0.56
2016 Banks CA, Boanca G, Lee ZT, Eubanks CG, Hattem GL, Peak A, Weems LE, Conkright JJ, Florens L, Washburn MP. TNIP2 is a hub protein in the NF-&(kappa)B network with both protein and RNA mediated interactions. Molecular & Cellular Proteomics : McP. PMID 27609421 DOI: 10.1074/mcp.M116.060509  0.56
2016 Li W, Atanassov BS, Lan X, Mohan RD, Swanson SK, Farria AT, Florens L, Washburn MP, Workman JL, Dent SY. Cytoplasmic ATXN7L3B Interferes with Nuclear Functions of the SAGA Deubiquitinase Module. Molecular and Cellular Biology. PMID 27601583 DOI: 10.1128/MCB.00193-16  0.56
2016 Hrecka K, Hao C, Shun MC, Kaur S, Swanson SK, Florens L, Washburn MP, Skowronski J. HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 27335459 DOI: 10.1073/pnas.1605023113  0.56
2016 Saraf A, Cervantes S, Bunnik EM, Ponts NP, Sardiu ME, Chung DD, Prudhomme J, Varberg J, Wen Z, Washburn MP, Florens LA, Le Roch KG. Dynamic and combinatorial landscape of histone modifications during the intra-erythrocytic developmental cycle of the malaria parasite. Journal of Proteome Research. PMID 27291344 DOI: 10.1021/acs.jproteome.6b00366  0.56
2016 Gilmore JM, Sardiu ME, Groppe BD, Thornton JL, Liu X, Dayebgadoh G, Banks CA, Slaughter BD, Unruh JR, Workman JL, Florens L, Washburn MP. WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage. Plos One. 11: e0155492. PMID 27248496 DOI: 10.1371/journal.pone.0155492  0.56
2016 Huang F, Saraf A, Florens L, Kusch T, Swanson SK, Szerszen LT, Li G, Dutta A, Washburn MP, Abmayr SM, Workman JL. The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition. Genes & Development. PMID 27198229 DOI: 10.1101/gad.271429.115  0.56
2016 Stegeman R, Spreacker PJ, Swanson SK, Stephenson R, Florens L, Washburn MP, Weake VM. The spliceosomal protein SF3B5 is a novel component of Drosophila SAGA that functions in gene expression independent of splicing. Journal of Molecular Biology. PMID 27185460 DOI: 10.1016/j.jmb.2016.05.009  0.56
2016 Atanassov BS, Mohan RD, Lan X, Kuang X, Lu Y, Lin K, McIvor E, Li W, Zhang Y, Florens L, Byrum SD, Mackintosh SG, Calhoun-Davis T, Koutelou E, Wang L, ... ... Washburn MP, et al. ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth. Molecular Cell. PMID 27132940 DOI: 10.1016/j.molcel.2016.03.030  0.56
2016 Washburn MP. There is no human interactome. Genome Biology. 17: 48. PMID 26975421 DOI: 10.1186/s13059-016-0913-4  0.56
2016 Lakshminarasimhan M, Boanca G, Banks CA, Hattem GL, Gabriel AE, Groppe BD, Smoyer C, Malanowski KE, Peak A, Florens L, Washburn MP. Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components. Molecular & Cellular Proteomics : McP. 15: 960-74. PMID 26831523 DOI: 10.1074/mcp.M115.053165  0.56
2016 Washburn MP, Zhao Y, Garcia BA. Reshaping the chromatin and epigenetic landscapes with quantitative mass spectrometry. Molecular & Cellular Proteomics : McP. PMID 26814188 DOI: 10.1074/mcp.E116.058602  0.56
2015 Suganuma T, Swanson SK, Florens L, Washburn MP, Workman JL. Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity. Journal of Molecular Cell Biology. PMID 26705305 DOI: 10.1093/jmcb/mjv070  0.56
2015 Li S, Swanson SK, Gogol M, Florens L, Washburn MP, Workman JL, Suganuma T. Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism. Molecular Cell. PMID 26527276 DOI: 10.1016/j.molcel.2015.09.024  0.56
2015 Masuda Y, Takahashi H, Sato S, Tomomori-Sato C, Saraf A, Washburn MP, Florens L, Conaway RC, Conaway JW, Hatakeyama S. TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin. Nature Communications. 6: 7299. PMID 26095369 DOI: 10.1038/ncomms8299  0.56
2015 Washburn MP. The H-index of 'an approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database'. Journal of the American Society For Mass Spectrometry. 26: 1799-803. PMID 26091891 DOI: 10.1007/s13361-015-1181-3  0.56
2015 Watanabe S, Tan D, Lakshminarasimhan M, Washburn MP, Hong EJ, Walz T, Peterson CL. Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C. Nature Communications. 6: 7108. PMID 25964121 DOI: 10.1038/ncomms8108  0.56
2015 Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC. Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses. The Journal of Biological Chemistry. 290: 15030-41. PMID 25878247 DOI: 10.1074/jbc.M114.632794  0.56
2015 Yan J, Hao C, DeLucia M, Swanson S, Florens L, Washburn MP, Ahn J, Skowronski J. CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain. The Journal of Biological Chemistry. 290: 13279-92. PMID 25847232 DOI: 10.1074/jbc.M115.646588  0.56
2015 Zhang Y, Wen Z, Washburn MP, Florens L. Improving label-free quantitative proteomics strategies by distributing shared peptides and stabilizing variance. Analytical Chemistry. 87: 4749-56. PMID 25839423 DOI: 10.1021/ac504740p  0.56
2015 Banks CA, Boanca G, Lee ZT, Florens L, Washburn MP. Proteins interacting with cloning scars: a source of false positive protein-protein interactions. Scientific Reports. 5: 8530. PMID 25704442 DOI: 10.1038/srep08530  0.56
2015 Luo Z, Gao X, Lin C, Smith ER, Marshall SA, Swanson SK, Florens L, Washburn MP, Shilatifard A. Zic2 is an enhancer-binding factor required for embryonic stem cell specification. Molecular Cell. 57: 685-94. PMID 25699711 DOI: 10.1016/j.molcel.2015.01.007  0.56
2015 Skaar JR, Ferris AL, Wu X, Saraf A, Khanna KK, Florens L, Washburn MP, Hughes SH, Pagano M. The Integrator complex controls the termination of transcription at diverse classes of gene targets. Cell Research. 25: 288-305. PMID 25675981 DOI: 10.1038/cr.2015.19  0.56
2015 Liang K, Gao X, Gilmore JM, Florens L, Washburn MP, Smith E, Shilatifard A. Characterization of human cyclin-dependent kinase 12 (CDK12) and CDK13 complexes in C-terminal domain phosphorylation, gene transcription, and RNA processing. Molecular and Cellular Biology. 35: 928-38. PMID 25561469 DOI: 10.1128/MCB.01426-14  0.56
2015 Pagan JK, Marzio A, Jones MJ, Saraf A, Jallepalli PV, Florens L, Washburn MP, Pagano M. Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing. Nature Cell Biology. 17: 31-43. PMID 25503564 DOI: 10.1038/ncb3076  0.56
2015 Sardiu ME, Gilmore JM, Groppe BD, Herman D, Ramisetty SR, Cai Y, Jin J, Conaway RC, Conaway JW, Florens L, Washburn MP. Conserved abundance and topological features in chromatin-remodeling protein interaction networks. Embo Reports. 16: 116-26. PMID 25427557 DOI: 10.15252/embr.201439403  0.56
2014 Link AJ, Washburn MP. Analysis of protein composition using multidimensional chromatography and mass spectrometry. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. 78: 23.1.1-23.1.25. PMID 25367006 DOI: 10.1002/0471140864.ps2301s78  0.56
2014 Dutta A, Gogol M, Kim JH, Smolle M, Venkatesh S, Gilmore J, Florens L, Washburn MP, Workman JL. Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions. Genes & Development. 28: 2314-30. PMID 25319830 DOI: 10.1101/gad.243584.114  0.56
2014 Herz HM, Morgan M, Gao X, Jackson J, Rickels R, Swanson SK, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling. Science (New York, N.Y.). 345: 1065-70. PMID 25170156 DOI: 10.1126/science.1255104  0.56
2014 Sardiu ME, Smith KT, Groppe BD, Gilmore JM, Saraf A, Egidy R, Peak A, Seidel CW, Florens L, Workman JL, Washburn MP. Suberoylanilide hydroxamic acid (SAHA)-induced dynamics of a human histone deacetylase protein interaction network. Molecular & Cellular Proteomics : McP. 13: 3114-25. PMID 25073741 DOI: 10.1074/mcp.M113.037127  0.56
2014 Banks CA, Lee ZT, Boanca G, Lakshminarasimhan M, Groppe BD, Wen Z, Hattem GL, Seidel CW, Florens L, Washburn MP. Controlling for gene expression changes in transcription factor protein networks. Molecular & Cellular Proteomics : McP. 13: 1510-22. PMID 24722732 DOI: 10.1074/mcp.M113.033902  0.56
2014 Ryu HW, Lee DH, Florens L, Swanson SK, Washburn MP, Kwon SH. Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila. Journal of Proteomics. 102: 137-47. PMID 24681131 DOI: 10.1016/j.jprot.2014.03.016  0.56
2014 Mohan RD, Dialynas G, Weake VM, Liu J, Martin-Brown S, Florens L, Washburn MP, Workman JL, Abmayr SM. Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration. Genes & Development. 28: 259-72. PMID 24493646 DOI: 10.1101/gad.225151.113  0.56
2014 Renaud M, Praz V, Vieu E, Florens L, Washburn MP, l'Hôte P, Hernandez N. Gene duplication and neofunctionalization: POLR3G and POLR3GL. Genome Research. 24: 37-51. PMID 24107381 DOI: 10.1101/gr.161570.113  0.56
2013 Yates JR, Washburn MP. Quantitative proteomics. Analytical Chemistry. 85: 8881. PMID 24079386 DOI: 10.1021/ac402745w  0.56
2013 Hu D, Smith ER, Garruss AS, Mohaghegh N, Varberg JM, Lin C, Jackson J, Gao X, Saraf A, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. The little elongation complex functions at initiation and elongation phases of snRNA gene transcription. Molecular Cell. 51: 493-505. PMID 23932780 DOI: 10.1016/j.molcel.2013.07.003  0.56
2013 Sela D, Conkright JJ, Chen L, Gilmore J, Washburn MP, Florens L, Conaway RC, Conaway JW. Role for human mediator subunit MED25 in recruitment of mediator to promoters by endoplasmic reticulum stress-responsive transcription factor ATF6α. The Journal of Biological Chemistry. 288: 26179-87. PMID 23864652 DOI: 10.1074/jbc.M113.496968  0.56
2013 Cox JL, Wilder PJ, Gilmore JM, Wuebben EL, Washburn MP, Rizzino A. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. Plos One. 8: e62857. PMID 23667531 DOI: 10.1371/journal.pone.0062857  0.56
2013 Kuchay S, Duan S, Schenkein E, Peschiaroli A, Saraf A, Florens L, Washburn MP, Pagano M. FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade. Nature Cell Biology. 15: 472-80. PMID 23604317 DOI: 10.1038/ncb2731  0.56
2013 Bonner AM, Hughes SE, Chisholm JA, Smith SK, Slaughter BD, Unruh JR, Collins KA, Friederichs JM, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, Hawley RS. Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains. Proceedings of the National Academy of Sciences of the United States of America. 110: E1222-31. PMID 23479640 DOI: 10.1073/pnas.1301690110  0.56
2013 Rossi M, Duan S, Jeong YT, Horn M, Saraf A, Florens L, Washburn MP, Antebi A, Pagano M. Regulation of the CRL4(Cdt2) ubiquitin ligase and cell-cycle exit by the SCF(Fbxo11) ubiquitin ligase. Molecular Cell. 49: 1159-66. PMID 23478441 DOI: 10.1016/j.molcel.2013.02.004  0.56
2013 Mosley AL, Hunter GO, Sardiu ME, Smolle M, Workman JL, Florens L, Washburn MP. Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation. Molecular & Cellular Proteomics : McP. 12: 1530-8. PMID 23418395 DOI: 10.1074/mcp.M112.024034  0.56
2013 Jeong YT, Rossi M, Cermak L, Saraf A, Florens L, Washburn MP, Sung P, Schildkraut CL, Schildkraut C, Pagano M. FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress. The Journal of Cell Biology. 200: 141-9. PMID 23319600 DOI: 10.1083/jcb.201209002  0.56
2012 Fine DA, Rozenblatt-Rosen O, Padi M, Korkhin A, James RL, Adelmant G, Yoon R, Guo L, Berrios C, Zhang Y, Calderwood MA, Velmurgan S, Cheng J, Marto JA, Hill DE, ... ... Washburn MP, et al. Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor. Plos Pathogens. 8: e1002949. PMID 23093934 DOI: 10.1371/journal.ppat.1002949  0.56
2012 Banks CA, Kong SE, Washburn MP. Affinity purification of protein complexes for analysis by multidimensional protein identification technology. Protein Expression and Purification. 86: 105-19. PMID 23017740 DOI: 10.1016/j.pep.2012.09.007  0.56
2012 Smith KT, Sardiu ME, Martin-Brown SA, Seidel C, Mushegian A, Egidy R, Florens L, Washburn MP, Workman JL. Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex. Molecular & Cellular Proteomics : McP. 11: 1815-28. PMID 22984288 DOI: 10.1074/mcp.M112.020255  0.56
2012 Smolle M, Venkatesh S, Gogol MM, Li H, Zhang Y, Florens L, Washburn MP, Workman JL. Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange. Nature Structural & Molecular Biology. 19: 884-92. PMID 22922743 DOI: 10.1038/nsmb.2312  0.56
2012 D'Angiolella V, Donato V, Forrester FM, Jeong YT, Pellacani C, Kudo Y, Saraf A, Florens L, Washburn MP, Pagano M. Cyclin F-mediated degradation of ribonucleotide reductase M2 controls genome integrity and DNA repair. Cell. 149: 1023-34. PMID 22632967 DOI: 10.1016/j.cell.2012.03.043  0.56
2012 Sela D, Chen L, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC. Endoplasmic reticulum stress-responsive transcription factor ATF6α directs recruitment of the Mediator of RNA polymerase II transcription and multiple histone acetyltransferase complexes. The Journal of Biological Chemistry. 287: 23035-45. PMID 22577136 DOI: 10.1074/jbc.M112.369504  0.56
2012 Luo Z, Lin C, Guest E, Garrett AS, Mohaghegh N, Swanson S, Marshall S, Florens L, Washburn MP, Shilatifard A. The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output. Molecular and Cellular Biology. 32: 2608-17. PMID 22547686 DOI: 10.1128/MCB.00182-12  0.56
2012 Takeo S, Swanson SK, Nandanan K, Nakai Y, Aigaki T, Washburn MP, Florens L, Hawley RS. Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 6382-9. PMID 22421435 DOI: 10.1073/pnas.1120367109  0.56
2012 Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, Yamaguchi M, Shiekhattar R, Shilatifard A. Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila. Molecular and Cellular Biology. 32: 1683-93. PMID 22354997 DOI: 10.1128/MCB.06503-11  0.56
2012 Suganuma T, Mushegian A, Swanson SK, Florens L, Washburn MP, Workman JL. A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component. Molecular & Cellular Proteomics : McP. 11: 90-9. PMID 22345504 DOI: 10.1074/mcp.M111.015818  0.56
2012 Gao Z, Cox JL, Gilmore JM, Ormsbee BD, Mallanna SK, Washburn MP, Rizzino A. Determination of protein interactome of transcription factor Sox2 in embryonic stem cells engineered for inducible expression of four reprogramming factors. The Journal of Biological Chemistry. 287: 11384-97. PMID 22334693 DOI: 10.1074/jbc.M111.320143  0.56
2012 Zhang DW, Mosley AL, Ramisetty SR, Rodríguez-Molina JB, Washburn MP, Ansari AZ. Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination Journal of Biological Chemistry. 287: 8541-8551. PMID 22235117 DOI: 10.1074/jbc.M111.335687  0.56
2012 Gilmore JM, Sardiu ME, Venkatesh S, Stutzman B, Peak A, Seidel CW, Workman JL, Florens L, Washburn MP. Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Molecular & Cellular Proteomics : McP. 11: M111.011544. PMID 22199229 DOI: 10.1074/mcp.M111.011544  0.56
2012 Daniels DL, Méndez J, Mosley AL, Ramisetty SR, Murphy N, Benink H, Wood KV, Urh M, Washburn MP. Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics. Journal of Proteome Research. 11: 564-75. PMID 22149079 DOI: 10.1021/pr200459c  0.56
2011 Smith ER, Lin C, Garrett AS, Thornton J, Mohaghegh N, Hu D, Jackson J, Saraf A, Swanson SK, Seidel C, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. The little elongation complex regulates small nuclear RNA transcription. Molecular Cell. 44: 954-65. PMID 22195968 DOI: 10.1016/j.molcel.2011.12.008  0.56
2011 Zhang Y, Wen Z, Washburn MP, Florens L. Improving proteomics mass accuracy by dynamic offline lock mass. Analytical Chemistry. 83: 9344-51. PMID 22044264 DOI: 10.1021/ac201867h  0.56
2011 Ponts N, Saraf A, Chung DW, Harris A, Prudhomme J, Washburn MP, Florens L, Le Roch KG. Unraveling the ubiquitome of the human malaria parasite. The Journal of Biological Chemistry. 286: 40320-30. PMID 21930698 DOI: 10.1074/jbc.M111.238790  0.56
2011 Sardiu ME, Washburn MP. Construction of protein interaction networks based on the label-free quantitative proteomics. Methods in Molecular Biology (Clifton, N.J.). 781: 71-85. PMID 21877278 DOI: 10.1007/978-1-61779-276-2_5  0.56
2011 Mohan M, Herz HM, Smith ER, Zhang Y, Jackson J, Washburn MP, Florens L, Eissenberg JC, Shilatifard A. The COMPASS family of H3K4 methylases in Drosophila. Molecular and Cellular Biology. 31: 4310-8. PMID 21875999 DOI: 10.1128/MCB.06092-11  0.56
2011 Costessi A, Mahrour N, Tijchon E, Stunnenberg R, Stoel MA, Jansen PW, Sela D, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC, Stunnenberg HG. The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters. The Embo Journal. 30: 3786-98. PMID 21822215 DOI: 10.1038/emboj.2011.262  0.56
2011 Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL. Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Genes & Development. 25: 1499-509. PMID 21764853 DOI: 10.1101/gad.2046211  0.56
2011 Lee KK, Sardiu ME, Swanson SK, Gilmore JM, Torok M, Grant PA, Florens L, Workman JL, Washburn MP. Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes. Molecular Systems Biology. 7: 503. PMID 21734642 DOI: 10.1038/msb.2011.40  0.56
2011 Takahashi H, Parmely TJ, Sato S, Tomomori-Sato C, Banks CA, Kong SE, Szutorisz H, Swanson SK, Martin-Brown S, Washburn MP, Florens L, Seidel CW, Lin C, Smith ER, Shilatifard A, et al. Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell. 146: 92-104. PMID 21729782 DOI: 10.1016/j.cell.2011.06.005  0.56
2011 Hrecka K, Hao C, Gierszewska M, Swanson SK, Kesik-Brodacka M, Srivastava S, Florens L, Washburn MP, Skowronski J. Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein Nature. 474: 658-661. PMID 21720370 DOI: 10.1038/nature10195  0.56
2011 Hao Y, Xu N, Box AC, Schaefer L, Kannan K, Zhang Y, Florens L, Seidel C, Washburn MP, Wiegraebe W, Mak HY. Nuclear cGMP-dependent kinase regulates gene expression via activity-dependent recruitment of a conserved histone deacetylase complex. Plos Genetics. 7: e1002065. PMID 21573134 DOI: 10.1371/journal.pgen.1002065  0.56
2011 Sardiu ME, Washburn MP. Building protein-protein interaction networks with proteomics and informatics tools. The Journal of Biological Chemistry. 286: 23645-51. PMID 21566121 DOI: 10.1074/jbc.R110.174052  0.56
2011 Litovchick L, Florens LA, Swanson SK, Washburn MP, DeCaprio JA. DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly. Genes & Development. 25: 801-13. PMID 21498570 DOI: 10.1101/gad.2034211  0.56
2011 Ramisetty SR, Washburn MP. Unraveling the dynamics of protein interactions with quantitative mass spectrometry. Critical Reviews in Biochemistry and Molecular Biology. 46: 216-28. PMID 21438726 DOI: 10.3109/10409238.2011.567244  0.56
2011 Chen L, Cai Y, Jin J, Florens L, Swanson SK, Washburn MP, Conaway JW, Conaway RC. Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling. The Journal of Biological Chemistry. 286: 11283-9. PMID 21303910 DOI: 10.1074/jbc.M111.222505  0.56
2011 Berdygulova Z, Westblade LF, Florens L, Koonin EV, Chait BT, Ramanculov E, Washburn MP, Darst SA, Severinov K, Minakhin L. Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45. Journal of Molecular Biology. 405: 125-42. PMID 21050864 DOI: 10.1016/j.jmb.2010.10.049  0.56
2011 Mosley AL, Sardiu ME, Pattenden SG, Workman JL, Florens L, Washburn MP. Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes. Molecular & Cellular Proteomics : McP. 10: M110.000687. PMID 21048197 DOI: 10.1074/mcp.M110.000687  0.56
2011 Washburn MP. Driving biochemical discovery with quantitative proteomics. Trends in Biochemical Sciences. 36: 170-7. PMID 20880711 DOI: 10.1016/j.tibs.2010.09.001  0.56
2010 Kwon SH, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II. Genes & Development. 24: 2133-45. PMID 20889714 DOI: 10.1101/gad.1959110  0.56
2010 Suganuma T, Mushegian A, Swanson SK, Abmayr SM, Florens L, Washburn MP, Workman JL. The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes. Cell. 142: 726-36. PMID 20813260 DOI: 10.1016/j.cell.2010.07.045  0.56
2010 Gilmore JM, Washburn MP. Advances in shotgun proteomics and the analysis of membrane proteomes. Journal of Proteomics. 73: 2078-91. PMID 20797458 DOI: 10.1016/j.jprot.2010.08.005  0.56
2010 Mallanna SK, Ormsbee BD, Iacovino M, Gilmore JM, Cox JL, Kyba M, Washburn MP, Rizzino A. Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate. Stem Cells (Dayton, Ohio). 28: 1715-27. PMID 20687156 DOI: 10.1002/stem.494  0.56
2010 D'Angiolella V, Donato V, Vijayakumar S, Saraf A, Florens L, Washburn MP, Dynlacht B, Pagano M. SCF(Cyclin F) controls centrosome homeostasis and mitotic fidelity through CP110 degradation. Nature. 466: 138-42. PMID 20596027 DOI: 10.1038/nature09140  0.56
2010 Mohan M, Herz HM, Takahashi YH, Lin C, Lai KC, Zhang Y, Washburn MP, Florens L, Shilatifard A. Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom). Genes & Development. 24: 574-89. PMID 20203130 DOI: 10.1101/gad.1898410  0.56
2010 Zhang Y, Wen Z, Washburn MP, Florens L. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Analytical Chemistry. 82: 2272-81. PMID 20166708 DOI: 10.1021/ac9023999  0.56
2010 Lin C, Smith ER, Takahashi H, Lai KC, Martin-Brown S, Florens L, Washburn MP, Conaway JW, Conaway RC, Shilatifard A. AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. Molecular Cell. 37: 429-37. PMID 20159561 DOI: 10.1016/j.molcel.2010.01.026  0.56
2010 Smith KT, Martin-Brown SA, Florens L, Washburn MP, Workman JL. Deacetylase inhibitors dissociate the histone-targeting ING2 subunit from the Sin3 complex. Chemistry & Biology. 17: 65-74. PMID 20142042 DOI: 10.1016/j.chembiol.2009.12.010  0.56
2010 Sardiu ME, Washburn MP. Enriching quantitative proteomics with SI(N). Nature Biotechnology. 28: 40-2. PMID 20062039 DOI: 10.1038/nbt0110-40  0.56
2010 Cai Y, Jin J, Swanson SK, Cole MD, Choi SH, Florens L, Washburn MP, Conaway JW, Conaway RC. Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex. The Journal of Biological Chemistry. 285: 4268-72. PMID 20018852 DOI: 10.1074/jbc.C109.087981  0.56
2010 Fournier ML, Paulson A, Pavelka N, Mosley AL, Gaudenz K, Bradford WD, Glynn E, Li H, Sardiu ME, Fleharty B, Seidel C, Florens L, Washburn MP. Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin. Molecular & Cellular Proteomics : McP. 9: 271-84. PMID 19955083 DOI: 10.1074/mcp.M900415-MCP200  0.56
2009 Weake VM, Swanson SK, Mushegian A, Florens L, Washburn MP, Abmayr SM, Workman JL. A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression. Genes & Development. 23: 2818-23. PMID 20008933 DOI: 10.1101/gad.1846409  0.56
2009 Sardiu ME, Gilmore JM, Carrozza MJ, Li B, Workman JL, Florens L, Washburn MP. Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics. Plos One. 4: e7310. PMID 19806189 DOI: 10.1371/journal.pone.0007310  0.56
2009 Takahashi H, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC. Proteomics reveals a physical and functional link between hepatocyte nuclear factor 4alpha and transcription factor IID. The Journal of Biological Chemistry. 284: 32405-12. PMID 19805548 DOI: 10.1074/jbc.M109.017954  0.56
2009 Skaar JR, Richard DJ, Saraf A, Toschi A, Bolderson E, Florens L, Washburn MP, Khanna KK, Pagano M. INTS3 controls the hSSB1-mediated DNA damage response. The Journal of Cell Biology. 187: 25-32. PMID 19786574 DOI: 10.1083/jcb.200907026  0.56
2009 Gottschalk AJ, Timinszky G, Kong SE, Jin J, Cai Y, Swanson SK, Washburn MP, Florens L, Ladurner AG, Conaway JW, Conaway RC. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler Proceedings of the National Academy of Sciences of the United States of America. 106: 13770-13774. PMID 19666485 DOI: 10.1073/pnas.0906920106  0.56
2009 Zhang Y, Wen Z, Washburn MP, Florens L. Effect of dynamic exclusion duration on spectral count based quantitative proteomics. Analytical Chemistry. 81: 6317-26. PMID 19586016 DOI: 10.1021/ac9004887  0.56
2009 Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A. Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Molecular and Cellular Biology. 29: 3478-86. PMID 19398585 DOI: 10.1128/MCB.00013-09  0.56
2009 Mosley AL, Pattenden SG, Carey M, Venkatesh S, Gilmore JM, Florens L, Workman JL, Washburn MP. Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation. Molecular Cell. 34: 168-78. PMID 19394294 DOI: 10.1016/j.molcel.2009.02.025  0.56
2009 Sardiu ME, Florens L, Washburn MP. Evaluation of clustering algorithms for protein complex and protein interaction network assembly. Journal of Proteome Research. 8: 2944-52. PMID 19317493 DOI: 10.1021/pr900073d  0.56
2009 Swanson SK, Florens L, Washburn MP. Generation and analysis of multidimensional protein identification technology datasets. Methods in Molecular Biology (Clifton, N.J.). 492: 1-20. PMID 19241024 DOI: 10.1007/978-1-59745-493-3_1  0.56
2009 Lee KK, Swanson SK, Florens L, Washburn MP, Workman JL. Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes. Epigenetics & Chromatin. 2: 2. PMID 19226466 DOI: 10.1186/1756-8935-2-2  0.56
2009 Shi M, Vivian CJ, Lee KJ, Ge C, Morotomi-Yano K, Manzl C, Bock F, Sato S, Tomomori-Sato C, Zhu R, Haug JS, Swanson SK, Washburn MP, Chen DJ, Chen BP, et al. DNA-PKcs-PIDDosome: a nuclear caspase-2-activating complex with role in G2/M checkpoint maintenance. Cell. 136: 508-20. PMID 19203584 DOI: 10.1016/j.cell.2008.12.021  0.56
2009 Mosley AL, Florens L, Wen Z, Washburn MP. A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. Journal of Proteomics. 72: 110-20. PMID 19038371 DOI: 10.1016/j.jprot.2008.10.008  0.56
2008 Lin CH, Li B, Swanson S, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL. Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase. Molecular Cell. 32: 696-706. PMID 19061644 DOI: 10.1016/j.molcel.2008.11.008  0.56
2008 Yao T, Song L, Jin J, Cai Y, Takahashi H, Swanson SK, Washburn MP, Florens L, Conaway RC, Cohen RE, Conaway JW. Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex. Molecular Cell. 31: 909-17. PMID 18922472 DOI: 10.1016/j.molcel.2008.08.027  0.56
2008 Washburn MP. Sample preparation and in-solution protease digestion of proteins for chromatography-based proteomic analysis. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.6.1-23.6.11. PMID 18729049 DOI: 10.1002/0471140864.ps2306s53  0.56
2008 Srivastava S, Swanson SK, Manel N, Florens L, Washburn MP, Skowronski J. Lentiviral Vpx accessory factor targets VprBP/DCAF1 substrate adaptor for cullin 4 E3 ubiquitin ligase to enable macrophage infection. Plos Pathogens. 4: e1000059. PMID 18464893 DOI: 10.1371/journal.ppat.1000059  0.56
2008 Suganuma T, Gutiérrez JL, Li B, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding. Nature Structural & Molecular Biology. 15: 364-72. PMID 18327268 DOI: 10.1038/nsmb.1397  0.56
2008 Savalia D, Westblade LF, Goel M, Florens L, Kemp P, Akulenko N, Pavlova O, Padovan JC, Chait BT, Washburn MP, Ackermann HW, Mushegian A, Gabisonia T, Molineux I, Severinov K. Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage. Journal of Molecular Biology. 377: 774-89. PMID 18294652 DOI: 10.1016/j.jmb.2007.12.077  0.56
2008 Sardiu ME, Cai Y, Jin J, Swanson SK, Conaway RC, Conaway JW, Florens L, Washburn MP. Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics. Proceedings of the National Academy of Sciences of the United States of America. 105: 1454-9. PMID 18218781 DOI: 10.1073/pnas.0706983105  0.56
2008 Liu WL, Coleman RA, Grob P, King DS, Florens L, Washburn MP, Geles KG, Yang JL, Ramey V, Nogales E, Tjian R. Structural changes in TAF4b-TFIID correlate with promoter selectivity. Molecular Cell. 29: 81-91. PMID 18206971 DOI: 10.1016/j.molcel.2007.11.003  0.56
2008 Mahrour N, Redwine WB, Florens L, Swanson SK, Martin-Brown S, Bradford WD, Staehling-Hampton K, Washburn MP, Conaway RC, Conaway JW. Characterization of Cullin-box sequences that direct recruitment of Cul2-Rbx1 and Cul5-Rbx2 modules to Elongin BC-based ubiquitin ligases. The Journal of Biological Chemistry. 283: 8005-13. PMID 18187417 DOI: 10.1074/jbc.M706987200  0.56
2007 Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A. Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell. 131: 1084-96. PMID 18083099 DOI: 10.1016/j.cell.2007.09.046  0.56
2006 Paoletti AC, Washburn MP. Quantitation in proteomic experiments utilizing mass spectrometry. Biotechnology & Genetic Engineering Reviews. 22: 1-19. PMID 18476323  0.56
2006 Zybailov B, Mosley AL, Sardiu ME, Coleman MK, Florens L, Washburn MP. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. Journal of Proteome Research. 5: 2339-47. PMID 16944946 DOI: 10.1021/pr060161n  0.56
2004 Link AJ, Jennings JL, Washburn MP. Analysis of protein composition using multidimensional chromatography and mass spectrometry. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.1. PMID 18429262 DOI: 10.1002/0471140864.ps2301s34  0.56
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