Klaas J. Hellingwerf - Publications

Affiliations: 
University of Amsterdam, Amsterdam, Netherlands 
Area:
Molecular Microbial Physiology
Website:
http://www.uva.nl/over-de-uva/organisatie/medewerkers/content/h/e/k.j.hellingwerf/k.j.hellingwerf.html

228 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Luimstra VM, Schuurmans JM, de Carvalho CFM, Matthijs HCP, Hellingwerf KJ, Huisman J. Exploring the low photosynthetic efficiency of cyanobacteria in blue light using a mutant lacking phycobilisomes. Photosynthesis Research. PMID 30820745 DOI: 10.1007/s11120-019-00630-z  0.4
2018 Chen Q, Arents J, Schuurmans JM, Ganapathy S, de Grip WJ, Cheregi O, Funk C, Dos Santos FB, Hellingwerf KJ. Combining retinal-based and chlorophyll-based (oxygenic) photosynthesis: Proteorhodopsin expression increases growth rate and fitness of a ∆PSI strain of Synechocystis sp. PCC6803. Metabolic Engineering. PMID 30447329 DOI: 10.1016/j.ymben.2018.11.002  0.4
2018 Luimstra VM, Schuurmans JM, Verschoor AM, Hellingwerf KJ, Huisman J, Matthijs HCP. Blue light reduces photosynthetic efficiency of cyanobacteria through an imbalance between photosystems I and II. Photosynthesis Research. PMID 30027501 DOI: 10.1007/s11120-018-0561-5  0.4
2018 Acuña AM, van Alphen P, Branco Dos Santos F, van Grondelle R, Hellingwerf KJ, van Stokkum IHM. Spectrally decomposed dark-to-light transitions in Synechocystis sp. PCC 6803. Photosynthesis Research. PMID 29600442 DOI: 10.1007/s11120-018-0505-0  0.64
2018 Chen Q, van der Steen JB, Arents JC, Hartog AF, Ganapathy S, de Grip WJ, Hellingwerf KJ. Deletion ofinsp. PCC 6803 allows formation of a far-red shifted-proteorhodopsin. Applied and Environmental Microbiology. PMID 29475867 DOI: 10.1128/AEM.02435-17  0.6
2017 Acuña AM, van Alphen P, Dos Santos FB, van Grondelle R, Hellingwerf KJ, van Stokkum IHM. Spectrally decomposed dark-to-light transitions in a PSI-deficient mutant of Synechocystis sp. PCC 6803. Biochimica Et Biophysica Acta. PMID 29137991 DOI: 10.1016/j.bbabio.2017.11.002  0.64
2017 Chen Q, Arents J, Ganapathy S, de Grip WJ, Hellingwerf KJ. Functional Expression of Gloeobacter Rhodopsin in Synechocystis sp. PCC6803. Photochemistry and Photobiology. 93: 772-781. PMID 28500716 DOI: 10.1111/php.12745  0.4
2016 Du W, Angermayr SA, Jongbloets JA, Molenaar D, Bachmann H, Hellingwerf KJ, Branco Dos Santos F. Nonhierarchical Flux Regulation Exposes the Fitness Burden Associated with Lactate Production in Synechocystis sp. PCC6803. Acs Synthetic Biology. PMID 27936615 DOI: 10.1021/acssynbio.6b00235  0.6
2016 Savakis P, Tan X, Qiao C, Song K, Lu X, Hellingwerf KJ, Branco Dos Santos F. Slr1670 from Synechocystis sp. PCC 6803 Is Required for the Re-assimilation of the Osmolyte Glucosylglycerol. Frontiers in Microbiology. 7: 1350. PMID 27621728 DOI: 10.3389/fmicb.2016.01350  1
2016 Chen Q, van der Steen JB, Dekker HL, Ganapathy S, de Grip WJ, Hellingwerf KJ. Expression of holo-proteorhodopsin in Synechocystis sp. PCC 6803. Metabolic Engineering. PMID 26869136 DOI: 10.1016/j.ymben.2016.02.001  1
2015 Angermayr SA, van der Woude AD, Correddu D, Kern R, Hagemann M, Hellingwerf KJ. Chirality matters: Synthesis and consumption of the D-enantiomer of lactic acid by Synechocystis sp. PCC6803. Applied and Environmental Microbiology. PMID 26682849 DOI: 10.1128/AEM.03379-15  1
2015 Hammar P, Angermayr SA, Sjostrom SL, van der Meer J, Hellingwerf KJ, Hudson EP, Joensson HN. Single-cell screening of photosynthetic growth and lactate production by cyanobacteria. Biotechnology For Biofuels. 8: 193. PMID 26613003 DOI: 10.1186/s13068-015-0380-2  1
2015 Schuurmans RM, van Alphen P, Schuurmans JM, Matthijs HC, Hellingwerf KJ. Comparison of the Photosynthetic Yield of Cyanobacteria and Green Algae: Different Methods Give Different Answers. Plos One. 10: e0139061. PMID 26394153 DOI: 10.1371/journal.pone.0139061  1
2015 Borirak O, de Koning LJ, van der Woude AD, Hoefsloot HC, Dekker HL, Roseboom W, de Koster CG, Hellingwerf KJ. Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803. Biotechnology For Biofuels. 8: 111. PMID 26246854 DOI: 10.1186/s13068-015-0294-z  1
2015 van der Steen JB, Hellingwerf KJ. Activation of the General Stress Response of Bacillus subtilis by Visible Light. Photochemistry and Photobiology. 91: 1032-45. PMID 26189730 DOI: 10.1111/php.12499  1
2015 Nudel CB, Hellingwerf KJ. Photoreceptors in Chemotrophic Prokaryotes: The Case of Acinetobacter spp. Revisited. Photochemistry and Photobiology. 91: 1012-20. PMID 26147719 DOI: 10.1111/php.12491  1
2015 Borirak O, Rolfe MD, de Koning LJ, Hoefsloot HC, Bekker M, Dekker HL, Roseboom W, Green J, de Koster CG, Hellingwerf KJ. Time-series analysis of the transcriptome and proteome of E. coli upon glucose repression. Biochimica Et Biophysica Acta. PMID 26049081 DOI: 10.1016/j.bbapap.2015.05.017  1
2015 Ganapathy S, Bécheau O, Venselaar H, Frölich S, van der Steen JB, Chen Q, Radwan S, Lugtenburg J, Hellingwerf KJ, de Groot HJ, de Grip WJ. Modulation of spectral properties and pump activity of proteorhodopsins by retinal analogues. The Biochemical Journal. 467: 333-43. PMID 25655771 DOI: 10.1042/BJ20141210  1
2015 Savakis P, Tan X, Du W, Branco dos Santos F, Lu X, Hellingwerf KJ. Photosynthetic production of glycerol by a recombinant cyanobacterium. Journal of Biotechnology. 195: 46-51. PMID 25541461 DOI: 10.1016/j.jbiotec.2014.12.015  1
2015 Zhu J, Vreede J, Hospes M, Arents J, Kennis JT, van Stokkum IH, Hellingwerf KJ, Groot ML. Short hydrogen bonds and negative charge in photoactive yellow protein promote fast isomerization but not high quantum yield. The Journal of Physical Chemistry. B. 119: 2372-83. PMID 25144816 DOI: 10.1021/jp506785q  0.76
2015 Carpine R, Olivieri G, Hellingwerf K, Pollio A, Marzocchella A. The cyanobacterial route to produce poly-β-hydroxybutyrate Chemical Engineering Transactions. 43: 289-294. DOI: 10.3303/CET1543049  1
2015 Van Alphen P, Hellingwerf KJ. Sustained circadian rhythms in continuous light in Synechocystis sp. PCC6803 growing in a well-controlled photobioreactor Plos One. 10. DOI: 10.1371/journal.pone.0127715  1
2015 Zhu J, Vreede J, Hospes M, Arents J, Kennis JTM, Van Stokkum IHM, Hellingwerf KJ, Groot ML. Short hydrogen bonds and negative charge in photoactive yellow protein promote fast isomerization but not high quantum yield Journal of Physical Chemistry B. 119: 2372-2383. DOI: 10.1021/jp506785q  1
2015 Angermayr SA, Gorchs Rovira A, Hellingwerf KJ. Metabolic engineering of cyanobacteria for the synthesis of commodity products Trends in Biotechnology. 33: 352-361. DOI: 10.1016/j.tibtech.2015.03.009  1
2015 Savakis P, Hellingwerf KJ. Engineering cyanobacteria for direct biofuel production from CO2 Current Opinion in Biotechnology. 33: 8-14. DOI: 10.1016/j.copbio.2014.09.007  1
2014 van Beilen JW, Teixeira de Mattos MJ, Hellingwerf KJ, Brul S. Distinct effects of sorbic acid and acetic acid on the electrophysiology and metabolism of Bacillus subtilis. Applied and Environmental Microbiology. 80: 5918-26. PMID 25038097 DOI: 10.1128/AEM.01391-14  0.36
2014 Van der Woude AD, Angermayr SA, Puthan Veetil V, Osnato A, Hellingwerf KJ. Carbon sink removal: Increased photosynthetic production of lactic acid by Synechocystis sp. PCC6803 in a glycogen storage mutant Journal of Biotechnology. 184: 100-102. PMID 24858679 DOI: 10.1016/j.jbiotec.2014.04.029  1
2014 Bettenbrock K, Bai H, Ederer M, Green J, Hellingwerf KJ, Holcombe M, Kunz S, Rolfe MD, Sanguinetti G, Sawodny O, Sharma P, Steinsiek S, Poole RK. Towards a systems level understanding of the oxygen response of Escherichia coli. Advances in Microbial Physiology. 64: 65-114. PMID 24797925 DOI: 10.1016/B978-0-12-800143-1.00002-6  1
2014 Bury A, Hellingwerf KJ. On the in vivo redox state of flavin-containing photosensory receptor proteins Methods in Molecular Biology (Clifton, N.J.). 1146: 177-190. PMID 24764093 DOI: 10.1007/978-1-4939-0452-5_9  1
2014 Milou Schuurmans R, Merijn Schuurmans J, Bekker M, Kromkamp JC, Matthijs HCP, Hellingwerf KJ. The redox potential of the plastoquinone pool of the cyanobacterium synechocystis species strain PCC 6803 is under strict homeostatic control Plant Physiology. 165: 463-475. PMID 24696521 DOI: 10.1104/pp.114.237313  1
2014 Mensonides FI, Brul S, Hellingwerf KJ, Bakker BM, Teixeira de Mattos MJ. A kinetic model of catabolic adaptation and protein reprofiling in Saccharomyces cerevisiae during temperature shifts. The Febs Journal. 281: 825-41. PMID 24616920 DOI: 10.1111/febs.12649  1
2014 Angermayr SA, Van Der Woude AD, Correddu D, Vreugdenhil A, Verrone V, Hellingwerf KJ. Exploring metabolic engineering design principles for the photosynthetic production of lactic acid by Synechocystis sp. PCC6803 Biotechnology For Biofuels. 7. DOI: 10.1186/1754-6834-7-99  1
2013 Song SH, Madsen D, van der Steen JB, Pullman R, Freer LH, Hellingwerf KJ, Larsen DS. Primary photochemistry of the dark- and light-adapted states of the YtvA protein from Bacillus subtilis. Biochemistry. 52: 7951-63. PMID 24171435 DOI: 10.1021/bi4012258  1
2013 Sharma P, Stagge S, Bekker M, Bettenbrock K, Hellingwerf KJ. Kinase Activity of ArcB from Escherichia coli Is Subject to Regulation by Both Ubiquinone and Demethylmenaquinone Plos One. 8. PMID 24116043 DOI: 10.1371/journal.pone.0075412  1
2013 Savakis PE, Angermayr SA, Hellingwerf KJ. Synthesis of 2,3-butanediol by Synechocystis sp. PCC6803 via heterologous expression of a catabolic pathway from lactic acid- and enterobacteria Metabolic Engineering. 20: 121-130. PMID 24104064 DOI: 10.1016/j.ymben.2013.09.008  1
2013 Van Der Steen JB, Nakasone Y, Hendriks J, Hellingwerf KJ. Modeling the functioning of YtvA in the general stress response in Bacillus subtilis Molecular Biosystems. 9: 2331-2343. PMID 23817467 DOI: 10.1039/c3mb70124g  1
2013 Bitrian M, González RH, Paris G, Hellingwerf KJ, Nudel CB. Blue-light-dependent inhibition of twitching motility in Acinetobacter baylyi ADP1: additive involvement of three BLUF-domain-containing proteins. Microbiology (Reading, England). 159: 1828-41. PMID 23813679 DOI: 10.1099/mic.0.069153-0  1
2013 Wijffels RH, Kruse O, Hellingwerf KJ. Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae Current Opinion in Biotechnology. 24: 405-413. PMID 23647970 DOI: 10.1016/j.copbio.2013.04.004  1
2013 Angermayr SA, Hellingwerf KJ. On the use of metabolic control analysis in the optimization of cyanobacterial biosolar cell factories Journal of Physical Chemistry B. 117: 11169-11175. PMID 23506247 DOI: 10.1021/jp4013152  1
2013 Zhu J, Paparelli L, Hospes M, Arents J, Kennis JTM, Van Stokkum IHM, Hellingwerf KJ, Groot ML. Photoionization and electron radical recombination dynamics in photoactive yellow protein investigated by ultrafast spectroscopy in the visible and near-infrared spectral region Journal of Physical Chemistry B. 117: 11042-11048. PMID 23477674 DOI: 10.1021/jp311906f  1
2013 Hospes M, Hendriks J, Hellingwerf KJ. Tryptophan fluorescence as a reporter for structural changes in photoactive yellow protein elicited by photo-activation Photochemical and Photobiological Sciences. 12: 479-488. PMID 23183905 DOI: 10.1039/c2pp25222h  1
2013 Zhu J, Paparelli L, Hospes M, Arents J, Hellingwerf K, Kennis JTM, Van Stokkum IHM, Louise Groot M. Ultrafast geminate electron-radical recombination dynamics in photoactive yellow protein Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134107010  1
2013 Mensonides FIC, Hellingwerf KJ, de Mattos MJT, Brul S. Multiphasic adaptation of the transcriptome of Saccharomyces cerevisiae to heat stress Food Research International. 54: 1103-1112. DOI: 10.1016/j.foodres.2012.12.042  1
2012 Hospes M, Ippel JH, Boelens R, Hellingwerf KJ, Hendriks J. Binding of hydrogen-citrate to photoactive yellow protein is affected by the structural changes related to signaling state formation. The Journal of Physical Chemistry. B. 116: 13172-82. PMID 23078029 DOI: 10.1021/jp306891s  1
2012 Angermayr SA, Paszota M, Hellingwerf KJ. Engineering a cyanobacterial cell factory for production of lactic acid Applied and Environmental Microbiology. 78: 7098-7106. PMID 22865063 DOI: 10.1128/AEM.01587-12  1
2012 Sharma P, Hellingwerf KJ, Mattos MJT, Bekker M. Uncoupling of substrate-level phosphorylation in escherichia coli: During glucose-limited growth Applied and Environmental Microbiology. 78: 6908-6913. PMID 22843529 DOI: 10.1128/AEM.01507-12  1
2012 Sharma P, Teixeira De Mattos MJ, Hellingwerf KJ, Bekker M. On the function of the various quinone species in Escherichia coli Febs Journal. 279: 3364-3373. PMID 22521170 DOI: 10.1111/j.1742-4658.2012.08608.x  1
2012 Van Roermund CWT, Ijlst L, Majczak W, Waterham HR, Folkerts H, Wanders RJA, Hellingwerf KJ. Peroxisomal fatty acid uptake mechanism in saccharomyces cerevisiae Journal of Biological Chemistry. 287: 20144-20153. PMID 22493507 DOI: 10.1074/jbc.M111.332833  1
2012 van der Steen JB, Ávila-Pérez M, Knippert D, Vreugdenhil A, van Alphen P, Hellingwerf KJ. Differentiation of function among the RsbR paralogs in the general stress response of bacillus subtilis with regard to light perception Journal of Bacteriology. 194: 1708-1716. PMID 22287516 DOI: 10.1128/JB.06705-11  1
2011 Stahl AD, Hospes M, Singhal K, Van Stokkum I, Van Grondelle R, Groot ML, Hellingwerf KJ. On the involvement of single-bond rotation in the primary photochemistry of photoactive yellow protein Biophysical Journal. 101: 1184-1192. PMID 21889456 DOI: 10.1016/j.bpj.2011.06.065  1
2011 Di Donato M, van Wilderen LJ, Van Stokkum IH, Stuart TC, Kennis JT, Hellingwerf KJ, van Grondelle R, Groot ML. Proton transfer events in GFP. Physical Chemistry Chemical Physics : Pccp. 13: 16295-305. PMID 21847481 DOI: 10.1039/c1cp20387h  1
2011 Rupenyan AB, Vreede J, van Stokkum IH, Hospes M, Kennis JT, Hellingwerf KJ, Groot ML. Proline 68 enhances photoisomerization yield in photoactive yellow protein. The Journal of Physical Chemistry. B. 115: 6668-77. PMID 21542640 DOI: 10.1021/jp112113s  0.76
2011 Nakasone Y, Hellingwerf KJ. On the binding of BODIPY-GTP by the photosensory protein YtvA from the common soil bacterium Bacillus subtilis Photochemistry and Photobiology. 87: 542-547. PMID 21388385 DOI: 10.1111/j.1751-1097.2011.00919.x  1
2011 Carroll EC, Hospes M, Valladares C, Hellingwerf KJ, Larsen DS. Is the photoactive yellow protein a UV-B/blue light photoreceptor? Photochemical and Photobiological Sciences. 10: 464-468. PMID 21267495 DOI: 10.1039/c0pp00274g  1
2011 Arents JC, Perez MA, Hendriks J, Hellingwerf KJ. On the midpoint potential of the FAD chromophore in a BLUF-domain containing photoreceptor protein Febs Letters. 585: 167-172. PMID 21110976 DOI: 10.1016/j.febslet.2010.11.035  1
2011 Sosinska GJ, De Koning LJ, De Groot PWJ, Manders EMM, Dekker HL, Hellingwerf KJ, De Koster CG, Klis FM. Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH Microbiology. 157: 136-146. PMID 20864472 DOI: 10.1099/mic.0.044206-0  1
2011 Rupenyan AB, Vreede J, Van Stokkum IHM, Hospes M, Kennis JTM, Hellingwerf KJ, Louise GM. Proline 68 enhances photoisomerization yield in photoactive yellow protein Journal of Physical Chemistry B. 115: 6668-6677. DOI: 10.1021/jp112113s  1
2010 Zakrzewska A, Boorsma A, Beek AT, Hageman JA, Westerhuis JA, Hellingwerf KJ, Brul S, Klis FM, Smits GJ. Comparative analysis of transcriptome and fitness profiles reveals general and condition-specific cellular functions involved in adaptation to environmental change in Saccharomyces cerevisiae. Omics : a Journal of Integrative Biology. 14: 603-14. PMID 20695823 DOI: 10.1089/omi.2010.0049  1
2010 Anemaet IG, Bekker M, Hellingwerf KJ. Algal Photosynthesis as the Primary Driver for a Sustainable Development in Energy, Feed, and Food Production Marine Biotechnology. 12: 619-629. PMID 20640935 DOI: 10.1007/s10126-010-9311-1  1
2010 Metz S, Hendriks J, Jäger A, Hellingwerf K, Klug G. In vivo effects on photosynthesis gene expression of base pair exchanges in the gene encoding the light-responsive BLUF domain of AppA in rhodobacter sphaeroides Photochemistry and Photobiology. 86: 882-889. PMID 20497366 DOI: 10.1111/j.1751-1097.2010.00749.x  1
2010 Ávila-Pérez M, Van Der Steen JB, Kort R, Hellingwerf KJ. Red light activates the σB-mediated general stress response of Bacillus subtilis via the energy branch of the upstream signaling cascade Journal of Bacteriology. 192: 755-762. PMID 19948797 DOI: 10.1128/JB.00826-09  1
2010 Bekker M, Alexeeva S, Laan W, Sawers G, De Mattos JT, Hellingwerf K. The ArcBA two-component system of Escherichia coli is regulated by the redox state of both the ubiquinone and the menaquinone pool Journal of Bacteriology. 192: 746-754. PMID 19933363 DOI: 10.1128/JB.01156-09  1
2009 Rupenyan A, van Stokkum IH, Arents JC, van Grondelle R, Hellingwerf KJ, Groot ML. Reaction pathways of photoexcited retinal in proteorhodopsin studied by pump-dump-probe spectroscopy. The Journal of Physical Chemistry. B. 113: 16251-6. PMID 19928893 DOI: 10.1021/jp9065289  0.6
2009 Van Der Horst MA, Stalcup TP, Kaledhonkar S, Kumauchi M, Hara M, Xie A, Hellingwerf KJ, Hoff WD. Locked chromophore analogs reveal that photoactive yellow protein regulates biofilm formation in the deep sea bacterium Idiomarina loihiensis Journal of the American Chemical Society. 131: 17443-17451. PMID 19891493 DOI: 10.1021/ja9057103  1
2009 Hoff WD, van der Horst MA, Nudel CB, Hellingwerf KJ. Prokaryotic phototaxis. Methods in Molecular Biology (Clifton, N.J.). 571: 25-49. PMID 19763957  1
2009 Avila-Pérez M, Vreede J, Tang Y, Bende O, Losi A, Gärtner W, Hellingwerf K. In vivo mutational analysis of YtvA from bacillus subtilis. Mechanism of light activation of the general stress response Journal of Biological Chemistry. 284: 24958-24964. PMID 19581299 DOI: 10.1074/jbc.M109.033316  1
2009 Alexandre MTA, Van Grondelle R, Hellingwerf KJ, Kennis JTM. Conformational heterogeneity and propagation of structural changes in the LOV2/Jα domain from Avena sativa phototropin 1 as recorded by temperature-dependent FTIR spectroscopy Biophysical Journal. 97: 238-247. PMID 19580761 DOI: 10.1016/j.bpj.2009.03.047  1
2009 Alexandre MTA, Domratcheva T, Bonetti C, Van Wilderen LJGW, Van Grondelle R, Groot ML, Hellingwerf KJ, Kennis JTM. Primary reactions of the LOV2 domain of phototropin studied with ultrafast mid-infrared spectroscopy and quantum chemistry Biophysical Journal. 97: 227-237. PMID 19580760 DOI: 10.1016/j.bpj.2009.01.066  1
2009 Bekker M, de Vries S, Ter Beek A, Hellingwerf KJ, de Mattos MJ. Respiration of Escherichia coli can be fully uncoupled via the nonelectrogenic terminal cytochrome bd-II oxidase. Journal of Bacteriology. 191: 5510-7. PMID 19542282 DOI: 10.1128/JB.00562-09  1
2009 Angermayr SA, Hellingwerf KJ, Lindblad P, Teixeira de MJ. Energy biotechnology with cyanobacteria Current Opinion in Biotechnology. 20: 257-263. PMID 19540103 DOI: 10.1016/j.copbio.2009.05.011  1
2009 Hellingwerf KJ, Teixeira de Mattos MJ. Alternative routes to biofuels: Light-driven biofuel formation from CO2 and water based on the 'photanol' approach Journal of Biotechnology. 142: 87-90. PMID 19480951 DOI: 10.1016/j.jbiotec.2009.02.002  1
2009 Kramer G, Sprenger RR, Back J, Dekker HL, Nessen MA, Van Maarseveen JH, De Koning LJ, Hellingwerf KJ, De Jong L, De Koster CG. Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography Molecular and Cellular Proteomics. 8: 1599-1611. PMID 19321432 DOI: 10.1074/mcp.M800392-MCP200  1
2009 Hendriks J, Hellingwerf KJ. pH dependence of the photoactive yellow protein photocycle recovery reaction reveals a new late photocycle intermediate with a deprotonated chromophore Journal of Biological Chemistry. 284: 5277-5288. PMID 19091750 DOI: 10.1074/jbc.M805904200  1
2009 Rupenyan A, Van Stokkum IHM, Arents JC, Van Grondelle R, Hellingwerf KJ, Groot ML. Reaction pathways of photoexcited retinal in proteorhodopsin studied by pump-dump-probe spectroscopy Journal of Physical Chemistry B. 113: 16251-16256. DOI: 10.1021/jp9065289  1
2009 Rze?nicka II, Wurpel GWH, Bonn M, van der Horst MA, Hellingwerf KJ, Matsunaga S, Yamada T, Kawai M. Observation of photoactive yellow protein anchored to a modified Au(1 1 1) surface by scanning tunneling microscopy Chemical Physics Letters. 472: 113-117. DOI: 10.1016/j.cplett.2009.02.067  1
2008 Alexandre MTA, Van Grondelle R, Hellingwerf KJ, Robert B, Kennis JTM. Perturbation of the ground-state electronic structure of FMN by the conserved cysteine in phototropin LOV2 domains Physical Chemistry Chemical Physics. 10: 6693-6702. PMID 18989482 DOI: 10.1039/b810040c  1
2008 Brul S, Mensonides FI, Hellingwerf KJ, Teixeira de Mattos MJ. Microbial systems biology: new frontiers open to predictive microbiology. International Journal of Food Microbiology. 128: 16-21. PMID 18541320 DOI: 10.1016/j.ijfoodmicro.2008.04.029  1
2008 Toh KC, Van Stokkum IHM, Hendriks J, Alexandre MTA, Arents JC, Perez MA, Van Grondelle R, Hellingwerf KJ, Kennis JTM. On the signaling mechanism and the absence of photoreversibility in the AppA BLUF domain Biophysical Journal. 95: 312-321. PMID 18339766 DOI: 10.1529/biophysj.107.117788  1
2008 Lee J, Tomchick DR, Brautigam CA, Machius M, Kort R, Hellingwerf KJ, Gardner KH. Changes at the KinA PAS-A dimerization interface influence histidine kinase function Biochemistry. 47: 4051-4064. PMID 18324779 DOI: 10.1021/bi7021156  1
2008 Vreede J, Hellingwerf KJ, Crielaard W. TraR auto-inducer enhances protein backbone fluctuations in DNA binding domain Febs Letters. 582: 805-809. PMID 18275856 DOI: 10.1016/j.febslet.2008.01.062  1
2008 Rupenyan A, van Stokkum IH, Arents JC, van Grondelle R, Hellingwerf K, Groot ML. Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy. Biophysical Journal. 94: 4020-30. PMID 18234812 DOI: 10.1529/biophysj.107.121376  1
2008 Sosinska GJ, de Groot PWJ, de Mattos MJT, Dekker HL, de Koster CG, Hellingwerf KJ, Klis FM. Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions Microbiology. 154: 510-520. PMID 18227255 DOI: 10.1099/mic.0.2007/012617-0  1
2008 Vreede J, Hellingwerf KJ, Bolhuis PG. Helix formation is a dynamical bottleneck in the recovery reaction of Photoactive Yellow Protein Proteins: Structure, Function and Genetics. 72: 136-149. PMID 18214984 DOI: 10.1002/prot.21902  1
2008 Schuurmans JM, Rossell SL, Van Tuijl A, Bakker BM, Hellingwerf KJ, Teixeira De Mattos MJ. Effect of hxk2 deletion and HAP4 overexpression on fermentative capacity in Saccharomyces cerevisiae Fems Yeast Research. 8: 195-203. PMID 18179578 DOI: 10.1111/j.1567-1364.2007.00319.x  1
2008 Schuurmans JM, Boorsma A, Lascaris R, Hellingwerf KJ, Teixeira De Mattos MJ. Physiological and transcriptional characterization of Saccharomyces cerevisiae strains with modified expression of catabolic regulators Fems Yeast Research. 8: 26-34. PMID 17892474 DOI: 10.1111/j.1567-1364.2007.00309.x  1
2008 Hazra P, Inoue K, Laan W, Hellingwerf KJ, Terazima M. Energetics and role of the hydrophobic interaction during photoreaction of the BLUF domain of AppA Journal of Physical Chemistry B. 112: 1494-1501. DOI: 10.1021/jp0767314  1
2007 van der Horst MA, Key J, Hellingwerf KJ. Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too Trends in Microbiology. 15: 554-562. PMID 18024131 DOI: 10.1016/j.tim.2007.09.009  1
2007 Majerus T, Kottke T, Laan W, Hellingwerf K, Heberle J. Time-resolved FT-IR spectroscopy traces signal relay within the blue-light receptor AppA Chemphyschem. 8: 1787-1789. PMID 17623285 DOI: 10.1002/cphc.200700248  1
2007 Gauden M, Grinstead JS, Laan W, van Stokkum IH, Avila-Perez M, Toh KC, Boelens R, Kaptein R, van Grondelle R, Hellingwerf KJ, Kennis JT. On the role of aromatic side chains in the photoactivation of BLUF domains. Biochemistry. 46: 7405-15. PMID 17542622 DOI: 10.1021/bi7006433  0.48
2007 Bekker M, Kramer G, Hartog AF, Wagner MJ, de Korster CG, Hellingwerf KJ, Teixeira de Mattos MJ. Changes in the redox state and composition of the quinone pool of Escherichia coli during aerobic batch-culture growth Microbiology. 153: 1974-1980. PMID 17526854 DOI: 10.1099/mic.0.2007/006098-0  1
2007 Van Der Horst MA, Arents JC, Kort R, Hellingwerf KJ. Binding, tuning and mechanical function of the 4-hydroxy-cinnamic acid chromophore in photoactive yellow protein Photochemical and Photobiological Sciences. 6: 571-579. PMID 17487311 DOI: 10.1039/b701072a  1
2007 Bekker M, Teixeira de MJ, Hellingwerf KJ. The role of two-component regulation systems in the physiology of the bacterial cell Science Progress. 89: 213-242. PMID 17338439 DOI: 10.3184/003685006783238308  1
2007 Alexandre MTA, Arents JC, Van Grondelle R, Hellingwerf KJ, Kennis JTM. A base-catalyzed mechanism for dark state recovery in the Avena sativa phototropin-1 LOV2 domain Biochemistry. 46: 3129-3137. PMID 17311415 DOI: 10.1021/bi062074e  1
2007 Mensonides F, Bakker B, Brul S, Hellingwerf K, De Mattos JT. A kinetic model as a tool to understand the response of Saccharomyces cerevisiae to heat exposure Modelling Microorganisms in Food. 228-249. DOI: 10.1533/9781845692940.2.228  1
2007 Van Wilderen LJGW, Van Stokkum IHM, Van Grondelle R, Van Der Horst MA, Hellingwerf KJ, Groot ML. What determines the success of isomerization of the Photoactive Yellow Protein chromophore? A picosecond pump-probe study in the midIR Springer Series in Chemical Physics. 88: 456-458. DOI: 10.1007/978-3-540-68781-8-147  1
2006 Van Wilderen LJGW, Van Der Horst MA, Van Stokkum IHM, Hellingwerf KJ, Van Grondelle R, Groot ML. Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein Proceedings of the National Academy of Sciences of the United States of America. 103: 15050-15055. PMID 17015839 DOI: 10.1073/pnas.0603476103  1
2006 Ávila-Pérez M, Hellingwerf KJ, Kort R. Blue light activates the σB-dependent stress response of Bacillus subtilis via YtvA Journal of Bacteriology. 188: 6411-6414. PMID 16923909 DOI: 10.1128/JB.00716-06  1
2006 Visser WF, van Roermund CWT, Ijlst L, Hellingwerf KJ, Waterham HR, Wanders RJA. First identification of a 2-ketoglutarate/isocitrate transport system in mammalian peroxisomes and its characterization Biochemical and Biophysical Research Communications. 348: 1224-1231. PMID 16919238 DOI: 10.1016/j.bbrc.2006.07.049  1
2006 Hazra P, Inoue K, Laan W, Hellingwerf KJ, Terazima M. Tetramer formation kinetics in the signaling state of AppA monitored by time-resolved diffusion Biophysical Journal. 91: 654-661. PMID 16648173 DOI: 10.1529/biophysj.106.083915  1
2006 Van Stokkum IHM, Gobets B, Gensch T, Van Mourik F, Hellingwerf KJ, Van Grondelle R, Kennis JTM. (Sub)-picosecond spectral evolution of fluorescence in photoactive proteins studied with a synchroscan streak camera system Photochemistry and Photobiology. 82: 380-388. PMID 16613489 DOI: 10.1562/2005-06-15-RA-572  1
2006 Veening JW, Kuipers OP, Brul S, Hellingwerf KJ, Kort R. Effects of phosphorelay perturbations on architecture, sporulation, and spore resistance in biofilms of Bacillus subtilis. Journal of Bacteriology. 188: 3099-109. PMID 16585769 DOI: 10.1128/JB.188.8.3099-3109.2006  1
2006 Yeremenko S, van Stokkum IH, Moffat K, Hellingwerf KJ. Influence of the crystalline state on photoinduced dynamics of photoactive yellow protein studied by ultraviolet-visible transient absorption spectroscopy. Biophysical Journal. 90: 4224-35. PMID 16513787 DOI: 10.1529/biophysj.105.074765  1
2006 Laan W, Gauden M, Yeremenko S, Van Grondelle R, Kennis JTM, Hellingwerf KJ. On the mechanism of activation of the BLUF domain of AppA Biochemistry. 45: 51-60. PMID 16388580 DOI: 10.1021/bi051367p  1
2006 Gauden M, Laan W, Key JM, van Stokkum IHM, van Grondelle R, Hellingwerf KJ, Hegemann P, Kennis JTM. The photochemistry of novel flavin-binding photoreceptors Femtochemistry Vii. 321-330. DOI: 10.1016/B978-044452821-6/50046-0  1
2006 van Wilderen LJGW, van Stokkum IHM, van GrondelleG R, Groot ML, van der Horst MA, Hellingwerf KJ. What determines the success of isomerization of the photoactive yellow protein chromophore?-a picosecond pump-probe study in the midIR Optics Infobase Conference Papers 1
2005 Losi A, Gensch T, Van Der Horst MA, Hellingwerf KJ, Braslavsky SE. Hydrogen-bond network probed by time-resolved optoacoustic spectroscopy: Photoactive yellow protein and the effect of E46Q and E46A mutations Physical Chemistry Chemical Physics. 7: 2229-2236. PMID 19791418 DOI: 10.1039/b419079c  1
2005 Vengris M, Larsen DS, Van Der Horst MA, Larsen OFA, Hellingwerf KJ, Van Grondelle R. Ultrafast dynamics of isolated model photoactive yellow protein chromophores: "Chemical perturbation theory" in the laboratory Journal of Physical Chemistry B. 109: 4197-4208. PMID 16851482 DOI: 10.1021/jp045763d  1
2005 Premvardhan L, Van Der Horst MA, Hellingwerf KJ, Van Grondelle R. How light-induced charge transfer accelerates the receptor-state recovery of photoactive yellow protein from its signaling state Biophysical Journal. 89: L64-L66. PMID 16258045 DOI: 10.1529/biophysj.105.075275  1
2005 van der Horst MA, Laan W, Yeremenko S, Wende A, Palm P, Oesterhelt D, Hellingwerf KJ. From primary photochemistry to biological function in the blue-light photoreceptors PYP and AppA. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 4: 688-93. PMID 16121278 DOI: 10.1039/b418442b  1
2005 Mensonides FI, Brul S, Klis FM, Hellingwerf KJ, Teixeira de Mattos MJ. Activation of the protein kinase C1 pathway upon continuous heat stress in Saccharomyces cerevisiae is triggered by an intracellular increase in osmolarity due to trehalose accumulation. Applied and Environmental Microbiology. 71: 4531-8. PMID 16085846 DOI: 10.1128/AEM.71.8.4531-4538.2005  1
2005 Bernard C, Houben K, Derix NM, Marks D, van der Horst MA, Hellingwerf KJ, Boelens R, Kaptein R, van Nuland NA. The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein. Structure (London, England : 1993). 13: 953-62. PMID 16004868 DOI: 10.1016/j.str.2005.04.017  0.48
2005 Kort R, O'Brien AC, van Stokkum IH, Oomes SJ, Crielaard W, Hellingwerf KJ, Brul S. Assessment of heat resistance of bacterial spores from food product isolates by fluorescence monitoring of dipicolinic acid release. Applied and Environmental Microbiology. 71: 3556-64. PMID 16000762 DOI: 10.1128/AEM.71.7.3556-3564.2005  1
2005 Van Der Horst MA, Van Stokkum IHM, Dencher NA, Hellingwerf KJ. Controlled reduction of the humidity induces a shortcut recovery reaction in the photocycle of photoactive yellow protein Biochemistry. 44: 9160-9167. PMID 15966740 DOI: 10.1021/bi050237d  1
2005 Zakrzewska A, Boorsma A, Brul S, Hellingwerf KJ, Klis FM. Transcriptional response of Saccharomyces cerevisiae to the plasma membrane-perturbing compound chitosan. Eukaryotic Cell. 4: 703-15. PMID 15821130 DOI: 10.1128/EC.4.4.703-715.2005  1
2005 Hellingwerf KJ. Bacterial observations: A rudimentary form of intelligence? Trends in Microbiology. 13: 152-158. PMID 15817384 DOI: 10.1016/j.tim.2005.02.001  1
2005 Gauden M, Yeremenko S, Laan W, Van Stokkum IHM, Ihalainen JA, Van Grondelle R, Hellingwerf KJ, Kennis JTM. Photocycle of the flavin-binding photoreceptor AppA, a bacterial transcriptional antirepressor of photosynthesis genes Biochemistry. 44: 3653-3662. PMID 15751942 DOI: 10.1021/bi047359a  1
2005 Visser WF, Van Roermund CW, Ijlst L, Hellingwerf KJ, Wanders RJA, Waterham HR. Demonstration and characterization of phosphate transport in mammalian peroxisomes Biochemical Journal. 389: 717-722. PMID 15727560 DOI: 10.1042/BJ20041846  1
2005 Vreede J, Crielaard W, Hellingwerf KJ, Bolhuis PG. Predicting the signaling state of photoactive yellow protein Biophysical Journal. 88: 3525-3535. PMID 15722437 DOI: 10.1529/biophysj.104.055103  1
2005 Yeremenko S, Hellingwerf KJ. Resolving protein structure dynamically Structure. 13: 4-6. PMID 15642256 DOI: 10.1016/j.str.2004.12.001  1
2005 Changenet-Barret P, Espagne A, Plaza P, Hellingwerf KJ, Martin MM. Investigations of the primary events in a bacterial photoreceptor for photomotility: Photoactive yellow protein (PYP) New Journal of Chemistry. 29: 527-534. DOI: 10.1039/b418134d  1
2005 van Der Horst MA, Hendriks J, Vreede J, Yeremenko S, Crielaard W, Hellingwerf KJ. Photoactive Yellow Protein, the Xanthopsin Handbook of Photosensory Receptors. 391-415. DOI: 10.1002/352760510X.ch19  1
2004 Laan W, Bednarz T, Heberle J, Hellingwerf KJ. Chromophore composition of a heterologously expressed BLUF-domain Photochemical and Photobiological Sciences. 3: 1011-1016. PMID 15570388 DOI: 10.1039/b410923f  1
2004 Hellingwerf KJ. A network of net-workers: Report of the Euresco conference on 'Bacterial Neural Networks' held at San Feliu (Spain) from 8 to 14 May 2004 Molecular Microbiology. 54: 2-13. PMID 15458400 DOI: 10.1111/j.1365-2958.2004.04321.x  1
2004 Larsen DS, Van Stokkum IHM, Vengris M, Van Der Horst MA, De Weerd FL, Hellingwerf KJ, Van Grondelle R. Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy Biophysical Journal. 87: 1858-1872. PMID 15345564 DOI: 10.1529/biophysj.104.043794  1
2004 Vengris M, van der Horst MA, Zgrablic G, van Stokkum IH, Haacke S, Chergui M, Hellingwerf KJ, van Grondelle R, Larsen DS. Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments. Biophysical Journal. 87: 1848-57. PMID 15345563 DOI: 10.1529/biophysj.104.043224  1
2004 de Groot PW, de Boer AD, Cunningham J, Dekker HL, de Jong L, Hellingwerf KJ, de Koster C, Klis FM. Proteomic analysis of Candida albicans cell walls reveals covalently bound carbohydrate-active enzymes and adhesins. Eukaryotic Cell. 3: 955-65. PMID 15302828 DOI: 10.1128/EC.3.4.955-965.2004  1
2004 Changenet-Barret P, Espagne A, Charier S, Baudin JB, Jullien L, Plaza P, Hellingwerf KJ, Martin MM. Early molecular events in the photoactive yellow protein: role of the chromophore photophysics. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 3: 823-9. PMID 15295641 DOI: 10.1039/b400398e  1
2004 Gensch T, Hendriks J, Hellingwerf KJ. Tryptophan fluorescence monitors structural changes accompanying signalling state formation in the photocycle of photoactive yellow protein. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 3: 531-6. PMID 15170481 DOI: 10.1039/b401600a  1
2004 Boorsma A, de Nobel H, ter Riet B, Bargmann B, Brul S, Hellingwerf KJ, Klis FM. Characterization of the transcriptional response to cell wall stress in Saccharomyces cerevisiae. Yeast (Chichester, England). 21: 413-27. PMID 15116342 DOI: 10.1002/yea.1109  1
2004 Larsen DS, Vengris M, van Stokkum IH, van der Horst MA, de Weerd FL, Hellingwerf KJ, van Grondelle R. Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution. Biophysical Journal. 86: 2538-50. PMID 15041690 DOI: 10.1016/S0006-3495(04)74309-X  1
2004 Kort R, Hellingwerf KJ, Ravelli RB. Initial events in the photocycle of photoactive yellow protein. The Journal of Biological Chemistry. 279: 26417-24. PMID 15026418 DOI: 10.1074/jbc.M311961200  1
2004 van der Horst MA, Hellingwerf KJ. Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families. Accounts of Chemical Research. 37: 13-20. PMID 14730990 DOI: 10.1021/ar020219d  1
2004 Vreede J, Van Der Horst MA, Kort R, Crielaard W, Hellingwerf KJ. Measuring and modelling dynamical changes in the structure of photoactive yellow protein Phase Transitions. 77: 3-20. DOI: 10.1080/01411590310001621384  1
2004 Premvardhan LL, Buda F, Van Der Horst MA, Lührs DC, Hellingwerf KJ, Van Grondelle R. Impact of Photon Absorption on the Electronic Properties of p-Coumaric Acid Derivatives of the Photoactive Yellow Protein Chromophore Journal of Physical Chemistry B. 108: 5138-5148.  1
2003 Armitage JP, Hellingwerf KJ. Light-induced behavioral responses (;phototaxis') in prokaryotes. Photosynthesis Research. 76: 145-55. PMID 16228574 DOI: 10.1023/A:1024974111818  1
2003 Derix NM, Wechselberger RW, van der Horst MA, Hellingwerf KJ, Boelens R, Kaptein R, van Nuland NA. Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate. Biochemistry. 42: 14501-6. PMID 14661962 DOI: 10.1021/bi034877x  0.48
2003 Laan W, van der Horst MA, van Stokkum IH, Hellingwerf KJ. Initial characterization of the primary photochemistry of AppA, a blue-light-using flavin adenine dinucleotide-domain containing transcriptional antirepressor protein from Rhodobacter sphaeroides: a key role for reversible intramolecular proton transfer from the flavin adenine dinucleotide chromophore to a conserved tyrosine? Photochemistry and Photobiology. 78: 290-7. PMID 14556317 DOI: 10.1562/0031-8655(2003)078<0290:ICOTPP>2.0.CO;2  1
2003 Kort R, Ravelli RB, Schotte F, Bourgeois D, Crielaard W, Hellingwerf KJ, Wulff M. Characterization of Photocycle Intermediates in Crystalline Photoactive Yellow Protein Photochemistry and Photobiology. 78: 131-137. PMID 12945580 DOI: 10.1562/0031-8655(2003)078<0131:COPIIC>2.0.CO;2  1
2003 Groot ML, van Wilderen LJ, Larsen DS, van der Horst MA, van Stokkum IH, Hellingwerf KJ, van Grondelle R. Initial steps of signal generation in photoactive yellow protein revealed with femtosecond mid-infrared spectroscopy. Biochemistry. 42: 10054-9. PMID 12939133 DOI: 10.1021/bi034878p  1
2003 De Groot PW, Hellingwerf KJ, Klis FM. Genome-wide identification of fungal GPI proteins. Yeast (Chichester, England). 20: 781-96. PMID 12845604 DOI: 10.1002/yea.1007  1
2003 Premvardhan LL, van der Horst MA, Hellingwerf KJ, van Grondelle R. Stark spectroscopy on photoactive yellow protein, E46Q, and a nonisomerizing derivative, probes photo-induced charge motion. Biophysical Journal. 84: 3226-39. PMID 12719252 DOI: 10.1016/S0006-3495(03)70047-2  1
2003 Vreede J, Van der Horst MA, Hellingwerf KJ, Crielaard W, Van Aalten DMF. PAS domains. Common structure and common flexibility Journal of Biological Chemistry. 278: 18434-18439. PMID 12639952 DOI: 10.1074/jbc.M301701200  1
2003 Chen E, Gensch T, Gross AB, Hendriks J, Hellingwerf KJ, Kliger DS. Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion Biochemistry. 42: 2062-2071. PMID 12590594 DOI: 10.1021/bi020577o  1
2003 Hendriks J, Van Stokkum IHM, Hellingwerf KJ. Deuterium isotope effects in the photocycle transitions of the Photoactive Yellow Protein Biophysical Journal. 84: 1180-1191. PMID 12547797  1
2003 Haker A, Hendriks J, Van Stokkum IHM, Heberle J, Hellingwerf KJ, Crielaard W, Gensch T. The two photocycles of photoactive yellow protein from Rhodobacter sphaeroides Journal of Biological Chemistry. 278: 8442-8451. PMID 12496261 DOI: 10.1074/jbc.M209343200  1
2003 Alexeeva S, Hellingwerf KJ, Teixeira de MJ. Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions Journal of Bacteriology. 185: 204-209. PMID 12486057 DOI: 10.1128/JB.185.1.204-209.2003  1
2003 Hellingwerf KJ, Hendriks J, Gensch T. Photoactive yellow protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go? Journal of Physical Chemistry A. 107: 1082-1094. DOI: 10.1021/jp027005y  1
2003 Larsen DS, Vengris M, van Stokkum IHM, van der Horst MA, Cordfunke RA, Hellingwerf KJ, van Grondelle R. Initial photo-induced dynamics of the photoactive yellow protein chromophore in solution Chemical Physics Letters. 369: 563-569. DOI: 10.1016/S0009-2614(03)00003-4  1
2003 Brul S, Klis FM, de Nobel H, Oomes SJCM, Coote P, Hellingwerf KJ. Yeast stress response to food preservations systems Yeasts in Food. 193-207. DOI: 10.1016/B978-1-85573-706-8.50012-5  1
2002 Hellingwerf KJ. The molecular basis of sensing and responding to light in microorganisms Antonie Van Leeuwenhoek, International Journal of General and Molecular Microbiology. 81: 51-59. PMID 12448705 DOI: 10.1023/A:1020521424582  1
2002 Mensonides FI, Schuurmans JM, Teixeira de Mattos MJ, Hellingwerf KJ, Brul S. The metabolic response of Saccharomyces cerevisiae to continuous heat stress. Molecular Biology Reports. 29: 103-6. PMID 12241037 DOI: 10.1023/A:1020392805411  1
2002 van Thor JJ, Hellingwerf KJ. Fluorescence resonance energy transfer (FRET) applications using green fluorescent protein. Energy transfer to the endogenous chromophores of phycobilisome light-harvesting complexes Methods in Molecular Biology (Clifton, N.J.). 183: 101-119. PMID 12136747  1
2002 Verhamme DT, Postma PW, Crielaard W, Hellingwerf KJ. Cooperativity in signal transfer through the Uhp system of Escherichia coli Journal of Bacteriology. 184: 4205-4210. PMID 12107138 DOI: 10.1128/JB.184.15.4205-4210.2002  1
2002 Van Aalten DMF, Crielaard W, Hellingwerf KJ, Joshua-Tor L. Structure of the photoactive yellow protein reconstituted with caffeic acid at 1.16 Å resolution Acta Crystallographica Section D: Biological Crystallography. 58: 585-590. PMID 11914481 DOI: 10.1107/S0907444902001257  1
2002 Hendriks J, Gensch T, Hviid L, Van Der Horst MA, Hellingwerf KJ, Van Thor JJ. Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red Biophysical Journal. 82: 1632-1643. PMID 11867475  1
2002 Alexeeva S, Hellingwerf KJ, Teixeira de MJ. Quantitative assessment of oxygen availability: Perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli Journal of Bacteriology. 184: 1402-1406. PMID 11844770  1
2002 Verhamme DT, Arents JC, Postma PW, Crielaard W, Hellingwerf KJ. Investigation of in vivo cross-talk between key two-component systems of Escherichia coli Microbiology. 148: 69-78. PMID 11782500  1
2002 Van Rotterdam BJ, Crielaard W, Van Stokkum IHM, Hellingwerf KJ, Westerhoff HV. Simplicity in complexity: The photosynthetic reaction center performs as a simple 0.2 V battery Febs Letters. 510: 105-107. PMID 11755540 DOI: 10.1016/S0014-5793(01)03210-0  1
2002 van Thor JJ, Gensch T, Hellingwerf KJ, Johnson LN. Phototransformation of green fluorescent protein with UV and visible light leads to decarboxylation of glutamate 222. Nature Structural Biology. 9: 37-41. PMID 11740505 DOI: 10.1038/nsb739  1
2002 Van Aalten DMF, Haker A, Hendriks J, Hellingwerf KJ, Joshua-Tor L, Crielaard W. Engineering photocycle dynamics: Crystal structures and kinetics of three photoactive yellow protein hinge-bending mutants Journal of Biological Chemistry. 277: 6463-6468. PMID 11714713 DOI: 10.1074/jbc.M109313200  1
2002 Hellingwerf KJ, Hendriks J, Gensch TH. On the configurational and conformational changes in photoactive yellow protein that leads to signal generation in Ectothiorhodospira halophila Journal of Biological Physics. 28: 395-412. DOI: 10.1023/A:1020360505111  1
2002 Brul S, Klis FM, Oomes SJCM, Montijn RC, Schuren FHJ, Coote P, Hellingwerf KJ. Detailed process design based on genomics of survivors of food preservation processes Trends in Food Science and Technology. 13: 325-333. DOI: 10.1016/S0924-2244(02)00161-9  1
2002 Matthijs HCP, Jeanjean R, Yeremenko N, Huisman J, Joset F, Hellingwerf KJ. Hypothesis: Versatile function of ferredoxin-NADP+ reductase in cyanobacteria provides regulation for transient photosystem I-driven cyclic electron flow Functional Plant Biology. 29: 201-210.  1
2001 Verhamme DT, Arents JC, Postma PW, Crielaard W, Hellingwerf KJ. Glucose-6-phosphate-dependent phosphoryl flow through the Uhp two-component regulatory system Microbiology. 147: 3345-3352. PMID 11739766  1
2001 Van Thor JJ, Borucki B, Crielaard W, Otto H, Lamparter T, Hughes J, Hellingwerf KJ, Heyn MP. Light-induced proton release and proton uptake reactions in the cyanobacterial phytochrome Cph1 Biochemistry. 40: 11460-11471. PMID 11560494 DOI: 10.1021/bi002651d  1
2001 Hoffer SM, Westerhoff HV, Hellingwerf KJ, Postma PW, Tommassen J. Autoamplification of a two-component regulatory system results in "learning" behavior. Journal of Bacteriology. 183: 4914-7. PMID 11466297 DOI: 10.1128/JB.183.16.4914-4917.2001  1
2001 Rijkenberg MJA, Kort R, Hellingwerf KJ. Alkalispirillum mobile gen. nov., spec. nov., an alkaliphilic non-phototrophic member of the Ectothiorhodospiraceae Archives of Microbiology. 175: 369-375. PMID 11409547 DOI: 10.1007/s002030100274  1
2001 Van Der Horst MA, Van Stokkum IH, Crielaard W, Hellingwerf KJ. The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation Febs Letters. 497: 26-30. PMID 11376657 DOI: 10.1016/S0014-5793(01)02427-9  1
2001 Xie A, Kelemen L, Hendriks J, White BJ, Hellingwerf KJ, Hoff WD. Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation. Biochemistry. 40: 1510-7. PMID 11327809 DOI: 10.1021/bi002449a  1
2001 van Rotterdam BJ, Westerhoff HV, Visschers RW, Bloch DA, Hellingwerf KJ, Jones MR, Crielaard W. Pumping capacity of bacterial reaction centers and backpressure regulation of energy transduction. European Journal of Biochemistry / Febs. 268: 958-70. PMID 11179962 DOI: 10.1046/j.1432-1327.2001.01951.x  1
2001 Criellard W, Kort R, Hellingwerf KJ. Chapter 6 Photoactive yellow protein, a photoreceptor from purple bacteria Comprehensive Series in Photosciences. 1: 179-192. DOI: 10.1016/S1568-461X(01)80010-7  1
2000 van Rotterdam BJ, Westerhoff HV, Visschers RW, Jones MR, Hellingwerf KJ, Crielaard W. Steady-state cyclic electron transfer through solubilized Rhodobacter sphaeroides reaction centres. Biophysical Chemistry. 88: 137-52. PMID 11152271 DOI: 10.1016/S0301-4622(00)00206-4  1
2000 Craven CJ, Derix NM, Hendriks J, Boelens R, Hellingwerf KJ, Kaptein R. Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies. Biochemistry. 39: 14392-9. PMID 11087391  0.44
2000 Alexeeva S, De Kort B, Sawers G, Hellingwerf KJ, De Mattos MJT. Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli Journal of Bacteriology. 182: 4934-4940. PMID 10940038 DOI: 10.1128/JB.182.17.4934-4940.2000  1
2000 Kandori H, Iwata T, Hendriks J, Maeda A, Hellingwerf KJ. Water structural changes involved in the activation process of photoactive yellow protein Biochemistry. 39: 7902-7909. PMID 10891070 DOI: 10.1021/bi000357f  1
2000 Hellingwerf KJ. Key issues in the photochemistry and signalling-state formation of photosensor proteins Journal of Photochemistry and Photobiology B: Biology. 54: 94-102. PMID 10836537 DOI: 10.1016/S1011-1344(00)00004-X  1
2000 Kort R, Crielaard W, Spudich JL, Hellingwerf KJ. Color-sensitive motility and methanol release responses in Rhodobacter sphaeroides. Journal of Bacteriology. 182: 3017-21. PMID 10809677 DOI: 10.1128/JB.182.11.3017-3021.2000  1
2000 Van Thor JJ, Jeanjean R, Havaux M, Sjollema KA, Joset F, Hellingwerf KJ, Matthijs HCP. Salt shock-inducible Photosystem I cyclic electron transfer in Synechocystis PCC6803 relies on binding of ferredoxin:NADP+ reductase to the thylakoid membranes via its CpcD phycobilisome-linker homologous N-terminal domain Biochimica Et Biophysica Acta - Bioenergetics. 1457: 129-144. PMID 10773158 DOI: 10.1016/S0005-2728(00)00072-4  1
2000 Van Aalten DMF, Crielaard W, Hellingwerf KJ, Joshua-Tor L. Conformational substates in different crystal forms of the photoactive yellow protein - Correlation with theoretical and experimental flexibility Protein Science. 9: 64-72. PMID 10739248  1
2000 Mahler GF, Kok RG, Cordenons A, Hellingwerf KJ, Nudel BC. Effects of carbon sources on extracellular lipase production and lipA transcription in Acinetobacter calcoaceticus Journal of Industrial Microbiology and Biotechnology. 24: 25-30.  1
1999 Van Thor JJ, Geerlings TH, Matthijs HCP, Hellingwerf KJ. Kinetic evidence for the PsaE-dependent transient ternary complex photosystem I/ferredoxin/ferredoxin:NADP+ reductase in a cyanobacterium Biochemistry. 38: 12735-12746. PMID 10504244 DOI: 10.1021/bi9903502  1
1999 Hendriks J, Van Stokkum IHM, Crielaard W, Hellingwerf KJ. Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila Febs Letters. 458: 252-256. PMID 10481075 DOI: 10.1016/S0014-5793(99)01136-9  1
1999 Van Thor JJ, Gruters OWM, Matthijs HCP, Hellingwerf KJ. Localization and function of ferredoxin:NADP+ reductase bound to the phycobilisomes of Synechocystis Embo Journal. 18: 4128-4136. PMID 10428952 DOI: 10.1093/emboj/18.15.4128  1
1999 Geißdörfer W, Kok RG, Ratajczak A, Hellingwerf KJ, Hillen W. The genes rubA and rubB for alkane degradation in Acinetobacter sp. strain ADP1 are in an operon with estB, encoding an esterase, and oxyR Journal of Bacteriology. 181: 4292-4298. PMID 10400587  1
1999 Hendriks J, Hoff WD, Crielaard W, Hellingwerf KJ. Protonation/deprotonation reactions triggered by photoactivation of photoactive yellow protein from Ectothiorhodospira halophila Journal of Biological Chemistry. 274: 17655-17660. PMID 10364204 DOI: 10.1074/jbc.274.25.17655  1
1999 Rubinstenn G, Vuister GW, Zwanenburg N, Hellingwerf KJ, Boelens R, Kaptein R. NMR experiments for the study of photointermediates: application to the photoactive yellow protein. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 137: 443-7. PMID 10089180 DOI: 10.1006/jmre.1999.1705  1
1999 Hoff WD, Xie A, Van Stokkum IHM, Tang Xj, Gural J, Kroon AR, Hellingwerf KJ. Global conformational changes upon receptor stimulation in photoactive yellow protein Biochemistry. 38: 1009-1017. PMID 9893997 DOI: 10.1021/bi980504y  1
1998 Hellingwerf KJ, Crielaard WC, Teixeira De Mattos MJ, Hoff WD, Kort R, Verhamme DT, Avignone-Rossa C. Current topics in signal transduction in bacteria Antonie Van Leeuwenhoek, International Journal of General and Molecular Microbiology. 74: 211-227. PMID 10081581 DOI: 10.1023/A:1001738419877  1
1998 Van Aalten DMF, Hoff WD, Findlay JBC, Crielaard W, Hellingwerf KJ. Concerted motions in the photoactive yellow protein Protein Engineering. 11: 873-879. PMID 9862206  1
1998 Van Thor JJ, Pierik AJ, Nugteren-Roodzant I, Xie A, Hellingwerf KJ. Characterization of the photoconversion of green fluorescent protein with FTIR spectroscopy Biochemistry. 37: 16915-16921. PMID 9836584 DOI: 10.1021/bi981170f  1
1998 Düx P, Rubinstenn G, Vuister GW, Boelens R, Mulder FA, Hård K, Hoff WD, Kroon AR, Crielaard W, Hellingwerf KJ, Kaptein R. Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry. 37: 12689-99. PMID 9737845 DOI: 10.1021/bi9806652  1
1998 Rubinstenn G, Vuister GW, Mulder FA, Düx PE, Boelens R, Hellingwerf KJ, Kaptein R. Structural and dynamic changes of photoactive yellow protein during its photocycle in solution. Nature Structural Biology. 5: 568-70. PMID 9665170 DOI: 10.1038/823  1
1998 Cordfunke R, Kort R, Pierik A, Gobets B, Koomen GJ, Verhoeven JW, Hellingwerf KJ. Trans/cis (Z/E) photoisomerization of the chromophore of photoactive yellow protein is not a prerequisite for the initiation of the photocycle of this photoreceptor protein. Proceedings of the National Academy of Sciences of the United States of America. 95: 7396-401. PMID 9636160 DOI: 10.1073/pnas.95.13.7396  1
1998 Kort R, Phillips-Jones MK, Van Aalten DMF, Haker A, Hoffer SM, Hellingwerf KJ, Crielaard W. Sequence, chromophore extraction and 3-D model of the photoactive yellow protein from Rhodobacter sphaeroides Biochimica Et Biophysica Acta - Protein Structure and Molecular Enzymology. 1385: 1-6. PMID 9630474 DOI: 10.1016/S0167-4838(98)00050-8  1
1998 Van Thor JJ, Hellingwerf KJ, Matthijs HCP. Characterization and transcriptional regulation of the synechocystis PCC 6803 petH gene, encoding ferredoxin-NADP+ oxidoreductase: Involvement of a novel type of divergent operator Plant Molecular Biology. 36: 353-363. PMID 9484476 DOI: 10.1023/A:1005935819038  1
1998 Van Thor JJ, Mullineaux CW, Matthijs HCP, Hellingwerf KJ. Light harvesting and state transitions in cyanobacteria Botanica Acta. 111: 430-443.  1
1998 Gensch T, Hellingwerf KJ, Braslavsky SE, Schaffner K. Photoequilibrium in the primary steps of the photoreceptors phytochrome A and photoactive yellow protein Journal of Physical Chemistry A. 102: 5398-5405.  1
1998 Changenet P, Zhang H, Van Der Meer MJ, Hellingwerf KJ, Glasbeek M. Subpicosecond fluorescence upconversion measurements of primary events in yellow proteins Chemical Physics Letters. 282: 276-282.  1
1997 Palmen R, Hellingwerf KJ. Uptake and processing of DNA by Acinetobacter calcoaceticus - A review Gene. 192: 179-190. PMID 9224889 DOI: 10.1016/S0378-1119(97)00042-5  1
1997 Hoff WD, Van Stokkum IHM, Gural J, Hellingwerf KJ. Comparison of acid denaturation and light activation in the eubacterial blue-light receptor photoactive yellow protein Biochimica Et Biophysica Acta - Bioenergetics. 1322: 151-162. DOI: 10.1016/S0005-2728(97)00082-0  1
1997 Baltuška A, Van Stokkum IHM, Kroon A, Monshouwer R, Hellingwerf KJ, Van Grondelle R. The primary events in the photoactivation of yellow protein Chemical Physics Letters. 270: 263-266.  1
1996 Van Der Zee JR, Postma PW, Hellingwerf KJ. Quantitative conversion of glucose into glucose 6-phosphate by intact Escherichia coli cells Biotechnology and Applied Biochemistry. 24: 225-230. PMID 8969452  1
1996 Kroon AR, Hoff WD, Fennema HP, Gijzen J, Koomen GJ, Verhoeven JW, Crielaard W, Hellingwerf KJ. Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores. The Journal of Biological Chemistry. 271: 31949-56. PMID 8943241 DOI: 10.1074/jbc.271.50.31949  1
1996 Xie A, Hoff WD, Kroon AR, Hellingwerf KJ. Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein Biochemistry. 35: 14671-14678. PMID 8942626 DOI: 10.1021/bi9623035  1
1996 Rauch PJG, Palmen R, Burds AA, Gregg-Jolly LA, Van Der Zee JR, Hellingwerf KJ. The expression of the Acinetobacter calcoaceticus recA gene increases in response to DNA damage independently of RecA and of development of competence for natural transformation Microbiology. 142: 1025-1032. PMID 8936328  1
1996 Hellingwerf KJ, Hoff WD, Crielaard W. Photobiology of microorganisms: How photosensors catch a photon to initialize signalling Molecular Microbiology. 21: 683-693. PMID 8878032  1
1996 Bompensieri S, Gonzalez R, Kok R, Miranda MV, Nutgeren-Roodzant I, Hellingwerf KJ, Cascone O, Nudel BC. Purification of a lipase from Acinetobacter calcoaceticus AAC323- I by hydrophobic-interaction methods Biotechnology and Applied Biochemistry. 23: 77-81. PMID 8867899  1
1996 Kok RG, De Waal A, Schut F, Welling GW, Weenk G, Hellingwerf KJ. Specific detection and analysis of a probiotic Bifidobacterium strain in infant feces Applied and Environmental Microbiology. 62: 3668-3672. PMID 8837422  1
1996 Kok RG, Nudel CB, Gonzalez RH, Nugteren-Roodzant IM, Hellingwerf KJ. Physiological factors affecting production of extracellular lipase (LipA) in Acinetobacter calcoaceticus BD413: Fatty acid repression of lipA expression and degradation of lipA Journal of Bacteriology. 178: 6025-6035. PMID 8830702  1
1996 Van Brederode ME, Hoff WD, Van Stokkum IHM, Groot ML, Hellingwerf KJ. Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein Biophysical Journal. 71: 365-380. PMID 8804619  1
1996 Kort R, Hoff WD, Van West M, Kroon AR, Hoffer SM, Vlieg KH, Crielaard W, Van Beeumen JJ, Hellingwerf KJ. The xanthopsins: A new family of eubacterial blue-light photoreceptors Embo Journal. 15: 3209-3218. PMID 8670821  1
1996 Kort R, Vonk H, Xu X, Hoff WD, Crielaard W, Hellingwerf KJ. Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein Febs Letters. 382: 73-78. PMID 8612767 DOI: 10.1016/0014-5793(96)00149-4  1
1996 Hellingwerf KJ, Palmen R. Chapter 31 Transport of DNA through bacterial membranes Handbook of Biological Physics. 2: 731-757. DOI: 10.1016/S1383-8121(96)80072-8  1
1996 Cordenons A, Gonzalez R, Kok R, Hellingwerf KJ, Nudel C. Effect of nitrogen sources on the regulation of extracellular lipase production in Acinetobacter calcoaceticus strains Biotechnology Letters. 18: 633-638. DOI: 10.1007/BF00130756  1
1995 Hoff WD, Matthijs HC, Schubert H, Crielaard W, Hellingwerf KJ. Rhodopsin(s) in eubacteria. Biophysical Chemistry. 56: 193-9. PMID 17023324 DOI: 10.1016/0301-4622(95)00033-T  1
1994 Hoff WD, Düx P, Hård K, Devreese B, Nugteren-Roodzant IM, Crielaard W, Boelens R, Kaptein R, van Beeumen J, Hellingwerf KJ. Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry. Biochemistry. 33: 13959-62. PMID 7947803  1
1994 Hellingwerf KJ, Crielaard W, Hoff WD, Matthijs HC, Mur LR, van Rotterdam BJ. Photobiology of bacteria. Antonie Van Leeuwenhoek. 65: 331-47. PMID 7832590 DOI: 10.1007/BF00872217  1
1993 Leguijt T, Engels PW, Crielaard W, Albracht SP, Hellingwerf KJ. Abundance, subunit composition, redox properties, and catalytic activity of the cytochrome bc1 complex from alkaliphilic and halophilic, photosynthetic members of the family Ectothiorhodospiraceae. Journal of Bacteriology. 175: 1629-36. PMID 8383662  1
1992 Crielaard W, van Mourik F, van Grondelle R, Konings WN, Hellingwerf KJ. Spectral identification of the electrochromically active carotenoids of Rhodobacter sphaeroides in chromatophores and reconstituted liposomes. Biochimica Et Biophysica Acta. 1100: 9-14. PMID 1567885 DOI: 10.1016/0005-2728(92)90120-Q  1
1989 Westerhoff HV, Wiechmann AH, van Dam K, Hellingwerf KJ. On the evaluation of data from flow-dialysis experiments. Journal of Biochemical and Biophysical Methods. 18: 53-64. PMID 2723331 DOI: 10.1016/0165-022X(89)90013-4  1
1988 Crielaard W, Driessen AJ, Molenaar D, Hellingwerf KJ, Konings WN. Light-driven amino acid uptake in Streptococcus cremoris or Clostridium acetobutylicum membrane vesicles fused with liposomes containing bacterial reaction centers. Journal of Bacteriology. 170: 1820-4. PMID 2832381  1
1983 Westerhoff HV, Hellingwerf KJ, Van Dam K. Thermodynamic efficiency of microbial growth is low but optimal for maximal growth rate. Proceedings of the National Academy of Sciences of the United States of America. 80: 305-9. PMID 6572006  1
1981 Westerhoff HV, Hellingwerf KJ, Arents JC, Scholte BJ, Van Dam K. Mosaic nonequilibrium thermodynamics describes biological energy transduction. Proceedings of the National Academy of Sciences of the United States of America. 78: 3554-8. PMID 6267598 DOI: 10.1073/pnas.78.6.3554  1
1978 Hellingwerf KJ, Scholte BJ, van Dam K. Bacteriorhodopsin vesicles. An outline of the requirements for light-dependent H+ pumping. Biochimica Et Biophysica Acta. 513: 66-77. PMID 31174  1
1977 Blok MC, Hellingwerf KJ, Van Dam K. Reconstitution of bacteriorhodopsin in a millipore filter system. Febs Letters. 76: 45-50. PMID 558120  1
1977 Van Dam K, Wiechmann AH, Hellingwerf KJ. Proton movements in energy-conserving membranes. Biochemical Society Transactions. 5: 485-7. PMID 20369  1
1977 Van Dam K, Wiechmann AH, Westerhoff HV, Hellingwerf KJ. Proton gradients across energy-transducing membranes. Biochemical Society Transactions. 5: 28-9. PMID 19321  1
1976 Hellingwerf KJ, Arents JC, Van Dam K. Light-stimulated oxygen uptake by vesicles containing cytochrome c oxidase and bacteriorhodopsin. Febs Letters. 67: 164-6. PMID 182550  1
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