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Year Citation  Score
2019 Ziraldo R, Shoura MJ, Fire AZ, Levene SD. Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications. Nucleic Acids Research. PMID 31226202 DOI: 10.1093/nar/gkz534  0.56
2019 Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM. Recompleting the genome. Genome Research. PMID 31123080 DOI: 10.1101/gr.244830.118  1
2019 Fu BXH, Smith JD, Fuchs RT, Mabuchi M, Curcuru J, Robb GB, Fire AZ. Target-dependent nickase activities of the CRISPR-Cas nucleases Cpf1 and Cas9. Nature Microbiology. PMID 30833733 DOI: 10.1038/s41564-019-0382-0  1
2019 Artiles KL, Fire AZ, Frøkjær-Jensen C. Assessment and Maintenance of Unigametic Germline Inheritance for C. elegans. Developmental Cell. PMID 30799227 DOI: 10.1016/j.devcel.2019.01.020  1
2018 Silas S, Jain N, Stadler M, Fu BXH, Sánchez-Amat A, Fire AZ, Arribere J. A Small RNA Isolation and Sequencing Protocol and Its Application to Assay CRISPR RNA Biogenesis in Bacteria. Bio-Protocol. 8. PMID 29600253 DOI: 10.21769/BioProtoc.2727  1
2017 Chung A, Hou Y, Ohgami RS, Von Gehr A, Fisk DG, Roskin KM, Li X, Gojenola L, Bangs CD, Arber DA, Fire AZ, Cherry AM, Zehnder JL, Gotlib J, Merker JD. A novel TRIP11-FLT3 fusion in a patient with a myeloid/lymphoid neoplasm with eosinophilia. Cancer Genetics. 216: 10-15. PMID 29025582 DOI: 10.1016/j.cancergen.2017.05.001  0.44
2017 Shoura MJ, Gabdank I, Hansen L, Merker J, Gotlib J, Levene SD, Fire AZ. Intricate and Cell-type-specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens. G3 (Bethesda, Md.). PMID 28801508 DOI: 10.1534/g3.117.300141  0.56
2017 Silas S, Makarova KS, Shmakov S, Páez-Espino D, Mohr G, Liu Y, Davison M, Roux S, Krishnamurthy SR, Fu BXH, Hansen LL, Wang D, Sullivan MB, Millard A, Clokie MR, ... ... Fire AZ, et al. On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires. Mbio. 8. PMID 28698278 DOI: 10.1128/mBio.00897-17  1
2017 Fu BXH, Wainberg M, Kundaje A, Fire AZ. High-Throughput Characterization of Cascade Type I-E CRISPR Guide Efficacy Reveals Unexpected PAM Diversity and Target Sequence Preferences. Genetics. PMID 28634160 DOI: 10.1534/genetics.117.202580  1
2016 Frøkjær-Jensen C, Jain N, Hansen L, Davis MW, Li Y, Zhao D, Rebora K, Millet JR, Liu X, Kim SK, Dupuy D, Jorgensen EM, Fire AZ. An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline. Cell. PMID 27374334 DOI: 10.1016/j.cell.2016.05.072  1
2016 Gabdank I, Ramakrishnan S, Villeneuve AM, Fire AZ. A streamlined tethered chromosome conformation capture protocol. Bmc Genomics. 17: 274. PMID 27036078 DOI: 10.1186/s12864-016-2596-3  0.44
2016 Bonsignori M, Zhou T, Sheng Z, Chen L, Gao F, Joyce MG, Ozorowski G, Chuang GY, Schramm CA, Wiehe K, Alam SM, Bradley T, Gladden MA, Hwang KK, Iyengar S, ... ... Fire AZ, et al. Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody. Cell. PMID 26949186 DOI: 10.1016/j.cell.2016.02.022  1
2015 Bell RT, Fu BX, Fire AZ. Cas9 Variants Expand the Target Repertoire in Caenorhabditis elegans. Genetics. PMID 26680661 DOI: 10.1534/genetics.115.185041  1
2015 Wang C, Saborio S, Gresh L, Eswarappa M, Wu D, Fire A, Parameswaran P, Balmaseda A, Harris E. Chikungunya Virus Sequences Across the First Epidemic in Nicaragua, 2014-2015. The American Journal of Tropical Medicine and Hygiene. PMID 26643533 DOI: 10.4269/ajtmh.15-0497  1
2015 Nakatani Y, Mello CC, Hashimoto SI, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S. Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species. Bmc Genomics. 16: 978. PMID 26584643 DOI: 10.1186/s12864-015-2198-5  1
2015 Levin M, King JJ, Glanville J, Jackson KJ, Looney TJ, Hoh RA, Mari A, Andersson M, Greiff L, Fire AZ, Boyd SD, Ohlin M. Persistence and evolution of allergen-specific IgE repertoires during subcutaneous specific immunotherapy. The Journal of Allergy and Clinical Immunology. PMID 26559321 DOI: 10.1016/j.jaci.2015.09.027  1
2015 Zhang H, Artiles KL, Fire AZ. Functional relevance of "seed" and "non-seed" sequences in microRNA-mediated promotion of C. elegans developmental progression. Rna (New York, N.Y.). 21: 1980-92. PMID 26385508 DOI: 10.1261/rna.053793.115  1
2014 Drake M, Furuta T, Suen KM, Gonzalez G, Liu B, Kalia A, Ladbury JE, Fire AZ, Skeath JB, Arur S. A requirement for ERK-dependent Dicer phosphorylation in coordinating oocyte-to-embryo transition in C. elegans. Developmental Cell. 31: 614-28. PMID 25490268 DOI: 10.1016/j.devcel.2014.11.004  1
2014 Fu BX, Hansen LL, Artiles KL, Nonet ML, Fire AZ. Landscape of target:guide homology effects on Cas9-mediated cleavage. Nucleic Acids Research. 42: 13778-87. PMID 25399416 DOI: 10.1093/nar/gku1102  1
2014 Kepler TB, Liao HX, Alam SM, Bhaskarabhatla R, Zhang R, Yandava C, Stewart S, Anasti K, Kelsoe G, Parks R, Lloyd KE, Stolarchuk C, Pritchett J, Solomon E, Friberg E, ... ... Fire AZ, et al. Immunoglobulin gene insertions and deletions in the affinity maturation of HIV-1 broadly reactive neutralizing antibodies. Cell Host & Microbe. 16: 304-13. PMID 25211073 DOI: 10.1016/j.chom.2014.08.006  1
2014 Arribere JA, Bell RT, Fu BX, Artiles KL, Hartman PS, Fire AZ. Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in Caenorhabditis elegans. Genetics. 198: 837-46. PMID 25161212 DOI: 10.1534/genetics.114.169730  1
2014 Jackson KJ, Liu Y, Roskin KM, Glanville J, Hoh RA, Seo K, Marshall EL, Gurley TC, Moody MA, Haynes BF, Walter EB, Liao HX, Albrecht RA, García-Sastre A, Chaparro-Riggers J, ... ... Fire AZ, et al. Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. Cell Host & Microbe. 16: 105-14. PMID 24981332 DOI: 10.1016/j.chom.2014.05.013  1
2014 Wang C, Liu Y, Xu LT, Jackson KJ, Roskin KM, Pham TD, Laserson J, Marshall EL, Seo K, Lee JY, Furman D, Koller D, Dekker CL, Davis MM, Fire AZ, et al. Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires. Journal of Immunology (Baltimore, Md. : 1950). 192: 603-11. PMID 24337376 DOI: 10.4049/jimmunol.1301384  1
2014 Gabdank I, Fire AZ. Gamete-type dependent crossover interference levels in a defined region of caenorhabditis elegans chromosome V G3: Genes, Genomes, Genetics. 4: 117-120. PMID 24240780 DOI: 10.1534/g3.113.008672  1
2014 Arribere JA, Bell RT, Fu BXH, Artiles KL, Hartman PS, Fire AZ. Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in caenorhabditis elegans Genetics. 198: 837-846. DOI: 10.1534/genetics.114.169730/-/DC1  1
2013 Gu S, Goszczynski B, McGhee JD, Fire AZ. Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity. Epigenetics & Chromatin. 6: 37. PMID 24279402 DOI: 10.1186/1756-8935-6-37  1
2013 Stadler M, Fire A. Conserved Translatome Remodeling in Nematode Species Executing a Shared Developmental Transition Plos Genetics. 9. PMID 24098135 DOI: 10.1371/journal.pgen.1003739  1
2013 Merker JD, Roskin KM, Ng D, Pan C, Fisk DG, King JJ, Hoh R, Stadler M, Okumoto LM, Abidi P, Hewitt R, Jones CD, Gojenola L, Clark MJ, Zhang B, ... ... Fire AZ, et al. Comprehensive whole-genome sequencing of an early-stage primary myelofibrosis patient defines low mutational burden and non-recurrent candidate genes. Haematologica. 98: 1689-96. PMID 23872309 DOI: 10.3324/haematol.2013.092379  1
2013 Parameswaran P, Liu Y, Roskin KM, Jackson KKL, Dixit VP, Lee JY, Artiles KL, Zompi S, Vargas MJ, Simen BB, Hanczaruk B, McGowan KR, Tariq MA, Pourmand N, Koller D, ... ... Fire AZ, et al. Convergent antibody signatures in human dengue Cell Host and Microbe. 13: 691-700. PMID 23768493 DOI: 10.1016/j.chom.2013.05.008  1
2013 Saito TL, Hashimoto S, Gu SG, Morton JJ, Stadler M, Blumenthal T, Fire A, Morishita S. The transcription start site landscape of C. elegans. Genome Research. 23: 1348-61. PMID 23636945 DOI: 10.1101/gr.151571.112  1
2013 Liao HX, Lynch R, Zhou T, Gao F, Munir Alam S, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Mullikin JC, Gnanakaran S, Hraber P, et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus Nature. 496: 469-476. PMID 23552890 DOI: 10.1038/nature12053  1
2013 Gracey Maniar LE, Maniar JM, Chen ZY, Lu J, Fire AZ, Kay MA. Minicircle DNA vectors achieve sustained expression reflected by active chromatin and transcriptional level. Molecular Therapy : the Journal of the American Society of Gene Therapy. 21: 131-8. PMID 23183534 DOI: 10.1038/mt.2012.244  1
2012 Pak J, Maniar JM, Mello CC, Fire A. Protection from feed-forward amplification in an amplified RNAi mechanism. Cell. 151: 885-99. PMID 23141544 DOI: 10.1016/j.cell.2012.10.022  1
2012 Stadler M, Artiles K, Pak J, Fire A. Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets. Genome Research. 22: 2418-26. PMID 22855835 DOI: 10.1101/gr.136515.111  1
2012 Buckley BA, Burkhart KB, Gu SG, Spracklin G, Kershner A, Fritz H, Kimble J, Fire A, Kennedy S. A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality. Nature. 489: 447-51. PMID 22810588 DOI: 10.1038/nature11352  1
2012 Lu J, Zhang F, Xu S, Fire AZ, Kay MA. The extragenic spacer length between the 5' and 3' ends of the transgene expression cassette affects transgene silencing from plasmid-based vectors. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 2111-9. PMID 22565847 DOI: 10.1038/mt.2012.65  1
2012 Gu SG, Pak J, Guang S, Maniar JM, Kennedy S, Fire A. Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nature Genetics. 44: 157-64. PMID 22231482 DOI: 10.1038/ng.1039  1
2012 Kidd MJ, Chen Z, Wang Y, Jackson KJ, Zhang L, Boyd SD, Fire AZ, Tanaka MM, Gaëta BA, Collins AM. The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements. Journal of Immunology (Baltimore, Md. : 1950). 188: 1333-40. PMID 22205028 DOI: 10.4049/jimmunol.1102097  1
2012 Ring J, Akdis C, Behrendt H, Lauener RP, Schäppi G, Akdis M, Ammann W, De Beaumont O, Bieber T, Bienenstock J, Blaser K, Bochner B, Bousquet J, Crameri R, Custovic A, ... ... Fire A, et al. Davos declaration: Allergy as a global problem (Allergy: European Journal of Allergy and Clinical Immunology (2012) 67, (141-143)) Allergy: European Journal of Allergy and Clinical Immunology. 67: 712. DOI: 10.1111/j.1398-9995.2012.02814.x  1
2011 Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, et al. High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Proceedings of the National Academy of Sciences of the United States of America. 108: 21194-9. PMID 22160699 DOI: 10.1073/pnas.1118357109  1
2011 Stadler M, Fire A. Wobble base-pairing slows in vivo translation elongation in metazoans Rna. 17: 2063-2073. PMID 22045228 DOI: 10.1261/rna.02890211  1
2011 Liao HX, Chen X, Munshaw S, Zhang R, Marshall DJ, Vandergrift N, Whitesides JF, Lu X, Yu JS, Hwang KK, Gao F, Markowitz M, Heath SL, Bar KJ, Goepfert PA, ... ... Fire AZ, et al. Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated Journal of Experimental Medicine. 208: 2237-2249. PMID 21987658 DOI: 10.1084/jem.20110363  1
2011 Deuse T, Seifert M, Phillips N, Fire A, Tyan D, Kay M, Tsao PS, Hua X, Velden J, Eiermann T, Volk HD, Reichenspurner H, Robbins RC, Schrepfer S. Human leukocyte antigen I knockdown human embryonic stem cells induce host ignorance and achieve prolonged xenogeneic survival. Circulation. 124: S3-9. PMID 21911816 DOI: 10.1161/CIRCULATIONAHA.111.020727  1
2011 Deuse T, Seifert M, Phillips N, Fire A, Tyan D, Kay M, Tsao PS, Hua X, Velden J, Eiermann T, Volk HD, Reichenspurner H, Robbins RC, Schrepfer S. Immunobiology of naïve and genetically modified HLA-class-I-knockdown human embryonic stem cells. Journal of Cell Science. 124: 3029-37. PMID 21878509 DOI: 10.1242/jcs.087718  1
2011 Zhang H, Maniar JM, Fire AZ. 'Inc-miRs': Functional intron-interrupted miRNA genes Genes and Development. 25: 1589-1594. PMID 21828269 DOI: 10.1101/gad.2058711  1
2011 Ma Z, Swede H, Cassarino D, Fleming E, Fire A, Dadras SS. Up-regulated Dicer expression in patients with cutaneous melanoma. Plos One. 6: e20494. PMID 21698147 DOI: 10.1371/journal.pone.0020494  1
2011 Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Determinants of nucleosome organization in primary human cells. Nature. 474: 516-20. PMID 21602827 DOI: 10.1038/nature10002  1
2011 Blanchard D, Parameswaran P, Lopez-Molina J, Gent J, Saynuk JF, Fire A. On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans Rna Biology. 8: 458-467. PMID 21519199 DOI: 10.4161/rna.8.3.14657  1
2011 Maniar JM, Fire AZ. EGO-1, a C. elegans RdRP, modulates gene expression via production of mRNA-templated short antisense RNAs Current Biology. 21: 449-459. PMID 21396820 DOI: 10.1016/j.cub.2011.02.019  1
2011 Lamm AT, Stadler MR, Zhang H, Gent JI, Fire AZ. Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome Genome Research. 21: 265-275. PMID 21177965 DOI: 10.1101/gr.108845.110  1
2010 Wu D, Lamm AT, Fire AZ. Competition between ADAR and RNAi pathways for an extensive class of RNA targets Nature Structural and Molecular Biology. 18: 1094-1101. PMID 21909095 DOI: 10.1038/nsmb.2129  1
2010 Sha K, Gu SG, Pantalena-Filho LC, Goh A, Fleenor J, Blanchard D, Krishna C, Fire A. Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans. Bmc Genomics. 11: 465. PMID 20691096 DOI: 10.1186/1471-2164-11-465  1
2010 Gracey LE, Chen ZY, Maniar JM, Valouev A, Sidow A, Kay MA, Fire AZ. An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo. Epigenetics & Chromatin. 3: 13. PMID 20594331 DOI: 10.1186/1756-8935-3-13  1
2010 Boyd SD, Gaëta BA, Jackson KJ, Fire AZ, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, et al. Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. Journal of Immunology (Baltimore, Md. : 1950). 184: 6986-92. PMID 20495067 DOI: 10.4049/jimmunol.1000445  1
2010 Zhang H, Fire AZ. Cell autonomous specification of temporal identity by Caenorhabditis elegans microRNA lin-4 Developmental Biology. 344: 603-610. PMID 20493184 DOI: 10.1016/j.ydbio.2010.05.018  1
2010 Witten D, Tibshirani R, Gu SG, Fire A, Lui WO. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls Bmc Biology. 8. PMID 20459774 DOI: 10.1186/1741-7007-8-58  1
2010 Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. Human tRNA-derived small RNAs in the global regulation of RNA silencing. Rna (New York, N.Y.). 16: 673-95. PMID 20181738 DOI: 10.1261/rna.2000810  1
2010 Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, ... ... Fire AZ, et al. Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. Plos Pathogens. 6: e1000764. PMID 20169186 DOI: 10.1371/journal.ppat.1000764  1
2010 Gent JI, Lamm AT, Pavelec DM, Maniar JM, Parameswaran P, Tao L, Kennedy S, Fire AZ. Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma Molecular Cell. 37: 679-689. PMID 20116306 DOI: 10.1016/j.molcel.2010.01.012  1
2010 Gu SG, Fire A. Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning Chromosoma. 119: 73-87. PMID 19705140 DOI: 10.1007/s00412-009-0235-3  1
2009 Boyd SD, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, Miklos DB, Zehnder JL, Fire AZ. Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing. Science Translational Medicine. 1: 12ra23. PMID 20161664 DOI: 10.1126/scitranslmed.3000540  1
2009 Gent JI, Schvarzstein M, Villeneuve AM, Gu SG, Jantsch V, Fire AZ, Baudrimont A. A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference Genetics. 183: 1297-1314. PMID 19805814 DOI: 10.1534/genetics.109.109686  0.52
2009 Ma Z, Lui WO, Fire A, Dadras SS. Profiling and discovery of novel miRNAs from formalin-fixed, paraffin-embedded melanoma and nodal specimens Journal of Molecular Diagnostics. 11: 420-429. PMID 19710399 DOI: 10.2353/jmoldx.2009.090041  1
2009 Lei H, Liu J, Fukushige T, Fire A, Krause MW. Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network Development. 136: 1241-1249. PMID 19261701 DOI: 10.1242/dev.030668  1
2009 Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, ... ... Fire A, et al. Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science (New York, N.Y.). 323: 401-4. PMID 19074313 DOI: 10.1126/science.1163183  1
2008 Tan FJ, Husain M, Manlandro CM, Koppenol M, Fire AZ, Hill RB. CED-9 and mitochondrial homeostasis in C. elegans muscle Journal of Cell Science. 121: 3373-3382. PMID 18827010 DOI: 10.1242/jcs.032904  1
2008 Alcazar RM, Lin R, Fire AZ. Transmission dynamics of heritable silencing induced by double-stranded RNA in Caenorhabditis elegans Genetics. 180: 1275-1288. PMID 18757930 DOI: 10.1534/genetics.108.089433  1
2008 Haussecker D, Cao D, Huang Y, Parameswaran P, Fire AZ, Kay MA. Capped small RNAs and MOV10 in human hepatitis delta virus replication. Nature Structural & Molecular Biology. 15: 714-21. PMID 18552826 DOI: 10.1038/nsmb.1440  1
2008 Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Research. 18: 1051-63. PMID 18477713 DOI: 10.1101/gr.076463.108  1
2008 Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, Van De Rijn M. MicroRNA expression signature of human sarcomas Oncogene. 27: 2015-2026. PMID 17922033 DOI: 10.1038/sj.onc.1210836  1
2007 Fire AZ. Gene silencing by double-stranded RNA Cell Death and Differentiation. 14: 1998-2012. PMID 18007671 DOI: 10.1038/sj.cdd.4402253  1
2007 Parameswaran P, Jalili R, Tao L, Shokralla S, Gharizadeh B, Ronaghi M, Fire AZ. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing Nucleic Acids Research. 35. PMID 17932070 DOI: 10.1093/nar/gkm760  1
2007 Fire AZ. Gene silencing by double-stranded RNA (Nobel Lecture) Angewandte Chemie - International Edition. 46: 6966-6984. PMID 17722137 DOI: 10.1002/anie.200701979  1
2007 Tan FJ, Fire AZ, Hill RB. Regulation of apoptosis by C. elegans CED-9 in the absence of the C-terminal transmembrane domain Cell Death and Differentiation. 14: 1925-1935. PMID 17703231 DOI: 10.1038/sj.cdd.4402215  1
2007 Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM. Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans Rna. 13: 1492-1504. PMID 17652138 DOI: 10.1261/rna.581907  1
2007 Lui WO, Pourmand N, Patterson BK, Fire A. Patterns of known and novel small RNAs in human cervical cancer Cancer Research. 67: 6031-6043. PMID 17616659 DOI: 10.1158/0008-5472.CAN-06-0561  1
2007 Pak J, Fire A. Distinct populations of primary and secondary effectors during RNAi in C. elegans Science. 315: 241-244. PMID 17124291 DOI: 10.1126/science.1132839  1
2007 Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. Connector Inversion Probe technology: A powerful one-primer multiplex DAN amplification system for numerous scientific application Plos One. 2. DOI: 10.1371/journal.pone.0000915  1
2006 Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Research. 16: 1505-16. PMID 17038564 DOI: 10.1101/gr.5560806  1
2006 Blanchard D, Hutter H, Fleenor J, Fire A. A differential cytolocalization assay for analysis of macromolecular assemblies in the eukaryotic cytoplasm Molecular and Cellular Proteomics. 5: 2175-2184. PMID 16914455 DOI: 10.1074/mcp.T600025-MCP200  1
2006 Foehr ML, Lindy AS, Fairbank RC, Amin NM, Xu M, Yanowitz J, Fire AZ, Liu J. An antagonistic role for the C. elegans Schnurri homolog SMA-9 in modulating TGFbeta signaling during mesodermal patterning. Development (Cambridge, England). 133: 2887-96. PMID 16790477 DOI: 10.1242/dev.02476  1
2006 Moreno-Herrero F, Seidel R, Johnson SM, Fire A, Dekker NH. Structural analysis of hyperperiodic DNA from Caenorhabditis elegans. Nucleic Acids Research. 34: 3057-66. PMID 16738142 DOI: 10.1093/nar/gkl397  1
2006 Fire A, Alcazar R, Tan F. Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans Genetics. 173: 1259-1273. PMID 16648589 DOI: 10.1534/genetics.106.057364  1
2005 Fire A. Nucleic acid structure and intracellular immunity: Some recent ideas from the world of RNAi Quarterly Reviews of Biophysics. 38: 303-309. PMID 16515739 DOI: 10.1017/S0033583505004117  1
2005 Sha K, Fire A. Imprinting capacity of gamete lineages in Caenorhabditis elegans Genetics. 170: 1633-1652. PMID 15944356 DOI: 10.1534/genetics.104.040303  0.52
2005 Yanowitz J, Fire A. Cyclin D involvement demarcates a late transition in C. elegans embryogenesis Developmental Biology. 279: 244-251. PMID 15708572 DOI: 10.1016/j.ydbio.2004.12.022  1
2005 Fire A. Foreword Rna Interference Technology: From Basic Science to Drug Development. xi-xii. DOI: 10.1017/CBO9780511546402.001  1
2004 Yanowitz JL, Shakir MA, Hedgecock E, Hutter H, Fire AZ, Lundquist EA. UNC-39, the C. elegans homolog of the human myotonic dystrophy-associated homeodomain protein Six5, regulates cell motility and differentiation Developmental Biology. 272: 389-402. PMID 15282156 DOI: 10.1016/j.ydbio.2004.05.010  1
2004 Fire A. RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencing Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 242.  1
2003 Timmons L, Tabara H, Mello CC, Fire AZ. Inducible systemic RNA silencing in Caenorhabditis elegans. Molecular Biology of the Cell. 14: 2972-83. PMID 12857879 DOI: 10.1091/mbc.E03-01-0858  1
2002 Simmer F, Tijsterman M, Parrish S, Koushika SP, Nonet ML, Fire A, Ahringer J, Plasterk RH. Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi. Current Biology : Cb. 12: 1317-9. PMID 12176360 DOI: 10.1016/S0960-9822(02)01041-2  1
2002 Caplen NJ, Taylor JP, Statham VS, Tanaka F, Fire A, Morgan RA. Rescue of polyglutamine-mediated cytotoxicity by double-stranded RNA-mediated RNA interference. Human Molecular Genetics. 11: 175-84. PMID 11809726  1
2002 Kostas SA, Fire A. The T-box factor MLS-1 acts as a molecular switch during specification of nonstriated muscle in C. elegans Genes and Development. 16: 257-269. PMID 11799068 DOI: 10.1101/gad.923102  1
2001 Sijen T, Fleenor J, Simmer F, Thijssen KL, Parrish S, Timmons L, Plasterk RH, Fire A. On the role of RNA amplification in dsRNA-triggered gene silencing. Cell. 107: 465-76. PMID 11719187 DOI: 10.1016/S0092-8674(01)00576-1  1
2001 Parrish S, Fire A. Distinct roles for RDE-1 and RDE-4 during RNA interference in Caenorhabditis elegans Rna. 7: 1397-1402. PMID 11680844  1
2001 Caplen NJ, Parrish S, Imani F, Fire A, Morgan RA. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems Proceedings of the National Academy of Sciences of the United States of America. 98: 9742-9747. PMID 11481446 DOI: 10.1073/pnas.171251798  1
2001 Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell. 106: 23-34. PMID 11461699 DOI: 10.1016/S0092-8674(01)00431-7  1
2001 Timmons L, Court DL, Fire A. Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans Gene. 263: 103-112. PMID 11223248 DOI: 10.1016/S0378-1119(00)00579-5  1
2000 Parrish S, Fleenor J, Xu S, Mello C, Fire A. Functional anatomy of a dsRNA trigger: Differential requirement for the two trigger strands in RNA interference Molecular Cell. 6: 1077-1087. PMID 11106747  1
2000 Hsieh J, Fire A. Recognition and silencing of repeated DNA Annual Review of Genetics. 34: 187-204. PMID 11092826 DOI: 10.1146/annurev.genet.34.1.187  1
2000 Liu J, Ben-Shahar TR, Riemer D, Treinin M, Spann P, Weber K, Fire A, Gruenbaum Y. Essential roles for Caenorhabditis elegans lamin gene in nuclear organization, cell cycle progression, and spatial organization of nuclear pore complexes Molecular Biology of the Cell. 11: 3937-3947. PMID 11071918  1
2000 Liu J, Fire A. Overlapping roles of two Hox genes and the exd ortholog ceh-20 in diversification of the C. elegans postembryonic mesoderm Development. 127: 5179-5190. PMID 11060243  1
2000 Caplen NJ, Fleenor J, Fire A, Morgan RA. dsRNA-mediated gene silencing in cultured Drosophila cells: A tissue culture model for the analysis of RNA interference Gene. 252: 95-105. PMID 10903441 DOI: 10.1016/S0378-1119(00)00224-9  1
2000 Dichoso D, Brodigan T, Chwoe KY, Lee JS, Llacer R, Park M, Corsi AK, Kostas SA, Fire A, Ahnn J, Krause M. The MADS-box factor CeMEF2 is not essential for Caenorhebditis elegans myogenesis and development Developmental Biology. 223: 431-440. PMID 10882527 DOI: 10.1006/dbio.2000.9758  1
2000 Kostich M, Fire A, Fambrough DM. Identification and molecular-genetic characterization of a LAMP/CD68-like protein from Caenorhabditis elegans. Journal of Cell Science. 113: 2595-606. PMID 10862717  1
2000 Corsi AK, Kostas SA, Fire A, Krause M. Caenorhabditis elegans Twist plays an essential role in non-striated muscle development Development. 127: 2041-2051. PMID 10769229  1
1999 Hsieh J, Liu J, Kostas SA, Chang C, Sternberg PW, Fire A. The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans. Genes & Development. 13: 2958-70. PMID 10580003 DOI: 10.1101/gad.13.22.2958  1
1999 Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, Mello CC. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell. 99: 123-32. PMID 10535731 DOI: 10.1016/S0092-8674(00)81644-X  1
1999 Fire A. RNA-triggered gene silencing Trends in Genetics. 15: 358-363. PMID 10461204 DOI: 10.1016/S0168-9525(99)01818-1  1
1999 Miller DM, Desai NS, Hardin DC, Piston DW, Patterson GH, Fleenor J, Xu S, Fire A. Two-color GFP expression system for C. elegans. Biotechniques. 26: 914-8, 920-1. PMID 10337485  1
1999 Zhang JM, Chen L, Krause M, Fire A, Paterson BM. Evolutionary conservation of MyoD function and differential utilization of E proteins Developmental Biology. 208: 465-472. PMID 10191059 DOI: 10.1006/dbio.1999.9218  1
1998 Montgomery MK, Xu S, Fire A. RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans Proceedings of the National Academy of Sciences of the United States of America. 95: 15502-15507. PMID 9860998 DOI: 10.1073/pnas.95.26.15502  1
1998 Timmons L, Fire A. Specific interference by ingested dsRNA [10] Nature. 395: 854. PMID 9804418 DOI: 10.1038/27579  1
1998 Harfe BD, Vaz Gomes A, Kenyon C, Liu J, Krause M, Fire A. Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning. Genes & Development. 12: 2623-35. PMID 9716413  1
1998 Kelly WG, Fire A. Chromatin silencing and the maintenance of a functional germline in Caenorhabditis elegans Development. 125: 2451-2456. PMID 9609828  1
1983 Laski FA, Fire AZ, RajBhandary UL, Sharp PA. Characterization of tRNA precursor splicing in mammalian extracts. The Journal of Biological Chemistry. 258: 11974-80. PMID 6413507  1
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