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Haw Yang, Ph.D. - Publications

Affiliations: 
Chemistry Princeton University, Princeton, NJ 
Area:
molecular dynamics
Website:
http://www.princeton.edu/~yanglab/
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80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Pálmai M, Beckwith JS, Emerson NT, Zhao T, Kim EB, Yin S, Parajuli P, Tomczak K, Wang K, Sapkota B, Tien M, Jiang N, Klie RF, Yang H, Snee PT. Parabolic Potential Surfaces Localize Charge Carriers in Nonblinking Long-Lifetime "Giant" Colloidal Quantum Dots. Nano Letters. PMID 36455210 DOI: 10.1021/acs.nanolett.2c03563  0.603
2022 Li WY, Yin S, Huang SW, Yang MH, Chen PM, Wu SR, Welsher K, Yang H, Arthur Chen YM. The trajectory patterns of single HIV-1 virus-like particle in live CD4 cells: A real time three-dimensional multi-resolution microscopy study using encapsulated nonblinking giant quantum dot. Journal of Microbiology, Immunology, and Infection = Wei Mian Yu Gan Ran Za Zhi. PMID 36127231 DOI: 10.1016/j.jmii.2022.08.011  0.647
2021 Zhao T, Beckwith JS, Amin MJ, Pálmai M, Snee PT, Tien M, Yang H. Leveraging lifetime information to perform real-time 3D single-particle tracking in noisy environments. The Journal of Chemical Physics. 155: 164201. PMID 34717352 DOI: 10.1063/5.0063634  0.608
2020 Chen YT, Yang H, Chu JW. Structure-mechanics statistical learning unravels the linkage between local rigidity and global flexibility in nucleic acids Chemical Science. 11: 4969-4979. DOI: 10.1039/D0Sc00480D  0.303
2019 Yang H, Li H, Liu T. Photobleaching statistics in single-molecule on-/off-time distributions. The Journal of Chemical Physics. 151: 174101. PMID 31703494 DOI: 10.1063/1.5126500  0.333
2019 Guerra LF, Muir TW, Yang H. Single-Particle Dynamic Light Scattering: Shapes of Individual Nanoparticles. Nano Letters. PMID 31272153 DOI: 10.1021/Acs.Nanolett.9B02066  0.308
2018 Hong L, Li H, Yang H, Sengupta K. Nano-plasmonics and electronics co-integration in CMOS enabling a pill-sized multiplexed fluorescence microarray system. Biomedical Optics Express. 9: 5735-5758. PMID 30460159 DOI: 10.1364/Boe.9.005735  0.305
2018 Li H, Yang H. A versatile optical microscope for time-dependent single-molecule and single-particle spectroscopy. The Journal of Chemical Physics. 148: 123316. PMID 29604862 DOI: 10.1063/1.5009134  0.319
2017 Chu JW, Yang H. Identifying the structural and kinetic elements in protein large-amplitude conformational motions International Reviews in Physical Chemistry. 36: 185-227. DOI: 10.1080/0144235X.2017.1283885  0.328
2015 Welsher K, Yang H. Imaging the behavior of molecules in biological systems: breaking the 3D speed barrier with 3D multi-resolution microscopy. Faraday Discussions. PMID 26426758 DOI: 10.1039/C5Fd00090D  0.689
2015 Welsher K, McManus SA, Hsia CH, Yin S, Yang H. Discovery of protein- and DNA-imperceptible nanoparticle hard coating using gel-based reaction tuning. Journal of the American Chemical Society. 137: 580-3. PMID 25562211 DOI: 10.1021/Ja511297D  0.659
2014 Haas KR, Yang H, Chu JW. Trajectory Entropy of Continuous Stochastic Processes at Equilibrium. The Journal of Physical Chemistry Letters. 5: 999-1003. PMID 26270979 DOI: 10.1021/Jz500111P  0.323
2014 Sun X, Li H, Alfermann J, Mootz HD, Yang H. Kinetics profiling of gramicidin S synthetase A, a member of nonribosomal peptide synthetases. Biochemistry. 53: 7983-9. PMID 25437123 DOI: 10.1021/Bi501156M  0.33
2014 Sun X, Montiel D, Li H, Yang H. "Plug-and-go" strategy to manipulate streptavidin valencies. Bioconjugate Chemistry. 25: 1375-80. PMID 25082796 DOI: 10.1021/Bc500296P  0.672
2014 Welsher K, Yang H. Multi-resolution 3D visualization of the early stages of cellular uptake of peptide-coated nanoparticles. Nature Nanotechnology. 9: 198-203. PMID 24561356 DOI: 10.1038/Nnano.2014.12  0.681
2014 Tan YW, Hanson JA, Chu JW, Yang H. Confocal single-molecule FRET for protein conformational dynamics. Methods in Molecular Biology (Clifton, N.J.). 1084: 51-62. PMID 24061915 DOI: 10.1007/978-1-62703-658-0_3  0.59
2014 Welsher K, Yang H. 3D Multi-Resolution Microscopy for the Study of the Early Stages of Cellular Uptake Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2261  0.691
2014 Sun X, Tang W, Yang H. Reconstructing Global Conformational Dynamics of a Multi-Domain Protein Biophysical Journal. 106: 194a-195a. DOI: 10.1016/J.Bpj.2013.11.1151  0.331
2013 Haas KR, Yang H, Chu JW. Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon. The Journal of Physical Chemistry. B. 117: 15591-605. PMID 23937300 DOI: 10.1021/Jp405983D  0.331
2013 Montiel D, Yates EV, Sun L, Sampias MM, Malona J, Sorensen EJ, Yang H. Ligand synthesis and passivation for silver and large gold nanoparticles for single-particle-based sensing and spectroscopy. Methods in Molecular Biology (Clifton, N.J.). 1025: 237-50. PMID 23918342 DOI: 10.1007/978-1-62703-462-3_18  0.668
2013 Welsher K, Yang H. Three-dimensional target-locking microscopy Frontiers in Optics. DOI: 10.1364/Ls.2013.Lth3H.2  0.674
2013 Qian B, Montiel D, Bregulla A, Cichos F, Yang H. Harnessing thermal fluctuations for purposeful activities: The manipulation of single micro-swimmers by adaptive photon nudging Chemical Science. 4: 1420-1429. DOI: 10.1039/C2Sc21263C  0.679
2012 Hanson JA, Brokaw J, Hayden CC, Chu JW, Yang H. Structural distributions from single-molecule measurements as a tool for molecular mechanics. Chemical Physics. 396: 61-71. PMID 22661822 DOI: 10.1016/J.Chemphys.2011.06.014  0.583
2012 Welsher K, Yang H. Model-free analysis of time-dependent single-molecule spectroscopy: Dynamics of biological macromolecules Proceedings - International Symposium On Biomedical Imaging. 921-923. DOI: 10.1109/ISBI.2012.6235705  0.681
2012 Yang H. Single-Molecule FRET for Protein Conformation Distributions and Dynamics Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.262  0.316
2011 Nixon BT, Sysoeva TA, Chen B, Chowdhury S, Guo L, De Carlo S, Hanson J, Yang H. AAA+ ATPase Mechanism Biophysical Journal. 100: 38a. DOI: 10.1016/J.Bpj.2010.12.412  0.557
2011 Yang H. Change-point localization and wavelet spectral analysis of single-molecule time series Advances in Chemical Physics. 146: 217-243. DOI: 10.1002/9781118131374.Ch9  0.314
2010 Chen B, Sysoeva TA, Chowdhury S, Guo L, De Carlo S, Hanson JA, Yang H, Nixon BT. Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. Structure (London, England : 1993). 18: 1420-30. PMID 21070941 DOI: 10.1016/J.Str.2010.08.018  0.549
2010 Flynn EM, Hanson JA, Alber T, Yang H. Dynamic active-site protection by the M. tuberculosis protein tyrosine phosphatase PtpB lid domain. Journal of the American Chemical Society. 132: 4772-80. PMID 20230004 DOI: 10.1021/Ja909968N  0.58
2010 Yang H. Progress in single-molecule spectroscopy in cells. Current Opinion in Chemical Biology. 14: 3-9. PMID 19896891 DOI: 10.1016/J.Cbpa.2009.10.015  0.352
2010 Montiel D, Yang H. Real-time three-dimensional single-particle tracking spectroscopy for complex systems Laser and Photonics Reviews. 4: 374-385. DOI: 10.1002/Lpor.200910012  0.695
2009 Li CB, Yang H, Komatsuzaki T. New quantification of local transition heterogeneity of multiscale complex networks constructed from single-molecule time series. The Journal of Physical Chemistry. B. 113: 14732-41. PMID 19827784 DOI: 10.1021/Jp9059483  0.303
2009 Holman HY, Miles R, Hao Z, Wozei E, Anderson LM, Yang H. Real-time chemical imaging of bacterial activity in biofilms using open-channel microfluidics and synchrotron FTIR spectromicroscopy. Analytical Chemistry. 81: 8564-70. PMID 19775125 DOI: 10.1021/Ac9015424  0.32
2009 Zhang K, Zhang W, Yang CY, Yang H. Bipolar cellular morphology of malignant melanoma in unstained human melanoma skin tissue. Journal of Biomedical Optics. 14: 024042. PMID 19405770 DOI: 10.1117/1.3120491  0.599
2009 Tan YW, Hanson JA, Yang H. Direct Mg(2+) binding activates adenylate kinase from Escherichia coli. The Journal of Biological Chemistry. 284: 3306-13. PMID 19029291 DOI: 10.1074/Jbc.M803658200  0.554
2009 Yang H. The orientation factor in single-molecule förster-type resonance energy transfer, with examples for conformational transitions in proteins Israel Journal of Chemistry. 49: 313-321. DOI: 10.1560/Ijc.49.3-4.313  0.316
2009 Tan Y, Hanson JA, Brokaw J, Chu J, Yang H. Linking Enzyme Conformational Dynamics To Catalytic Function With Single-molecule FRET Biophysical Journal. 96: 73a-74a. DOI: 10.1016/J.Bpj.2008.12.279  0.595
2008 Yang H. Detection and characterization of dynamical heterogeneity in an event series using wavelet correlation. The Journal of Chemical Physics. 129: 074701. PMID 19044786 DOI: 10.1063/1.2969074  0.351
2008 Hanson JA, Yang H. Quantitative evaluation of cross correlation between two finite-length time series with applications to single-molecule FRET. The Journal of Physical Chemistry. B. 112: 13962-70. PMID 18847232 DOI: 10.1021/Jp804440Y  0.574
2008 Montiel D, Yang H. Observation of correlated emission intensity and polarization fluctuations in single CdSe/ZnS quantum dots. The Journal of Physical Chemistry. A. 112: 9352-5. PMID 18693717 DOI: 10.1021/Jp802317A  0.67
2008 Cang H, Montiel D, Xu CS, Yang H. Observation of spectral anisotropy of gold nanoparticles. The Journal of Chemical Physics. 129: 044503. PMID 18681656 DOI: 10.1063/1.2958912  0.674
2008 Hanson JA, Yang H. A general statistical test for correlations in a finite-length time series. The Journal of Chemical Physics. 128: 214101. PMID 18537409 DOI: 10.1063/1.2931943  0.569
2008 Li CB, Yang H, Komatsuzaki T. Multiscale complex network of protein conformational fluctuations in single-molecule time series. Proceedings of the National Academy of Sciences of the United States of America. 105: 536-41. PMID 18178627 DOI: 10.1073/Pnas.0707378105  0.344
2008 Xu CS, Kim H, Hayden CC, Yang H. Joint statistical analysis of multichannel time series from single quantum dot-(Cy5)n constructs. The Journal of Physical Chemistry. B. 112: 5917-23. PMID 18095665 DOI: 10.1021/Jp075642O  0.325
2008 Cang H, Shan Xu C, Yang H. Progress in single-molecule tracking spectroscopy Chemical Physics Letters. 457: 285-291. DOI: 10.1016/J.Cplett.2008.03.098  0.367
2007 Hanson JA, Duderstadt K, Watkins LP, Bhattacharyya S, Brokaw J, Chu JW, Yang H. Illuminating the mechanistic roles of enzyme conformational dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 18055-60. PMID 17989222 DOI: 10.1073/Pnas.0708600104  0.586
2007 Cang H, Xu CS, Montiel D, Yang H. Guiding a confocal microscope by single fluorescent nanoparticles. Optics Letters. 32: 2729-31. PMID 17873950 DOI: 10.1364/Ol.32.002729  0.68
2007 Li S, Zhang K, Yang JM, Lin L, Yang H. Single quantum dots as local temperature markers. Nano Letters. 7: 3102-5. PMID 17727300 DOI: 10.1021/Nl071606P  0.363
2007 Xu CS, Kim H, Yang H, Hayden CC. Multiparameter fluorescence spectroscopy of single quantum dot-dye FRET hybrids. Journal of the American Chemical Society. 129: 11008-9. PMID 17705496 DOI: 10.1021/Ja074279W  0.314
2007 Yang H. Time-Dependent Spectroscopy of a Nanoparticle Freely Moving in 3D Frontiers in Optics. DOI: 10.1364/Fio.2007.Jmc2  0.338
2007 Xu CS, Cang H, Montiel D, Yang H. Rapid and quantitative sizing of nanoparticles using three-dimensional single-particle tracking Journal of Physical Chemistry C. 111: 32-35. DOI: 10.1021/Jp0671796  0.679
2006 Watkins LP, Chang H, Yang H. Quantitative single-molecule conformational distributions: a case study with poly-(L-proline). The Journal of Physical Chemistry. A. 110: 5191-203. PMID 16610843 DOI: 10.1021/Jp055886D  0.343
2006 Zhang K, Chang H, Fu A, Alivisatos AP, Yang H. Continuous distribution of emission states from single CdSe/ZnS quantum dots. Nano Letters. 6: 843-7. PMID 16608295 DOI: 10.1021/Nl060483Q  0.553
2006 Ji N, Zhang K, Yang H, Shen YR. Three-dimensional chiral imaging by sum-frequency generation. Journal of the American Chemical Society. 128: 3482-3. PMID 16536497 DOI: 10.1021/Ja057775Y  0.355
2006 Cang H, Wong CM, Xu CS, Rizvi AH, Yang H. Confocal three dimensional tracking of a single nanoparticle with concurrent spectroscopic readouts Applied Physics Letters. 88. DOI: 10.1063/1.2204652  0.304
2005 Zhang K, Yang H. Photon-by-photon determination of emission bursts from diffusing single chromophores. The Journal of Physical Chemistry. B. 109: 21930-7. PMID 16853850 DOI: 10.1021/Jp0546047  0.358
2005 Watkins LP, Yang H. Detection of intensity change points in time-resolved single-molecule measurements. The Journal of Physical Chemistry. B. 109: 617-28. PMID 16851054 DOI: 10.1021/Jp0467548  0.321
2004 Fu A, Micheel CM, Cha J, Chang H, Yang H, Alivisatos AP. Discrete nanostructures of quantum dots/Au with DNA. Journal of the American Chemical Society. 126: 10832-3. PMID 15339154 DOI: 10.1021/Ja046747X  0.485
2004 Watkins LP, Yang H. Information bounds and optimal analysis of dynamic single molecule measurements. Biophysical Journal. 86: 4015-29. PMID 15189897 DOI: 10.1529/Biophysj.103.037739  0.326
2004 Rech I, Luo G, Ghioni M, Yang H, Xie XS, Cova S. Photon-timing detector module for single-molecule spectroscopy with 60-ps resolution Ieee Journal On Selected Topics in Quantum Electronics. 10: 788-795. DOI: 10.1109/Jstqe.2004.833975  0.559
2003 Yang H, Luo G, Karnchanaphanurach P, Louie TM, Rech I, Cova S, Xun L, Xie XS. Protein conformational dynamics probed by single-molecule electron transfer. Science (New York, N.Y.). 302: 262-6. PMID 14551431 DOI: 10.1126/Science.1086911  0.641
2002 Asplund MC, Snee PT, Yeston JS, Wilkens MJ, Payne CK, Yang H, Kotz KT, Frei H, Bergman RG, Harris CB. Ultrafast UV pump/IR probe studies of C-H activation in linear, cyclic, and aryl hydrocarbons. Journal of the American Chemical Society. 124: 10605-12. PMID 12197763 DOI: 10.1021/Ja020418S  0.766
2002 Louie TM, Yang H, Karnchanaphanurach P, Xie XS, Xun L. FAD is a preferred substrate and an inhibitor of Escherichia coli general NAD(P)H:flavin oxidoreductase. The Journal of Biological Chemistry. 277: 39450-5. PMID 12177066 DOI: 10.1074/Jbc.M206339200  0.388
2002 Yang H, Xie XS. Probing single-molecule dynamics photon by photon Journal of Chemical Physics. 117: 10965-10979. DOI: 10.1063/1.1521154  0.502
2002 Yang H, Xie XS. Statistical approaches for probing single-molecule dynamics photon-by-photon Chemical Physics. 284: 423-437. DOI: 10.1016/S0301-0104(02)00672-9  0.513
2001 Yang H, Snee PT, Kotz KT, Payne CK, Harris CB. Femtosecond infrared study of the dynamics of solvation and solvent caging. Journal of the American Chemical Society. 123: 4204-10. PMID 11457185 DOI: 10.1021/Ja003344Y  0.789
2001 Snee PT, Payne CK, Kotz KT, Yang H, Harris CB. Triplet organometallic reactivity under ambient conditions: an ultrafast UV pump/IR probe study. Journal of the American Chemical Society. 123: 2255-64. PMID 11456872 DOI: 10.1021/Ja002350R  0.782
2001 Kotz KT, Yang H, Snee PT, Payne CK, Harris CB. Ultrafast infrared studies of ligand rearrangement at coordinatively unsaturated transition metal centers Springer Series in Chemical Physics. 66: 636-638. DOI: 10.1007/978-3-642-56546-5_188  0.759
2000 Kotz KT, Yang H, Snee PT, Payne CK, Harris CB. Femtosecond infrared studies of ligand rearrangement reactions: Silyl hydride products from Group 6 carbonyls Journal of Organometallic Chemistry. 596: 183-192. DOI: 10.1016/S0022-328X(99)00676-2  0.79
1999 Asplund MC, Yang H, Kotz KT, Bromberg SE, Wilkens MJ, Harris CB. Femtosecond infrared studies of chemical bond activation Laser Chemistry. 19: 253-262. DOI: 10.1155/1999/79161  0.797
1999 Snee PT, Yang H, Kotz KT, Payne CK, Harris CB. Ultrafast infrared studies of the reaction mechanism of silicon-hydrogen bond activation by η5-CpV(CO)4 Journal of Physical Chemistry A. 103: 10426-10432. DOI: 10.1021/Jp991964J  0.798
1999 Yang H, Snee PT, Kotz KT, Payne CK, Frei H, Harris CB. Femtosecond infrared studies of a prototypical one-electron oxidative- addition reaction: Chlorine atom abstraction by the Re(CO)s radical [5] Journal of the American Chemical Society. 121: 9227-9228. DOI: 10.1021/Ja991682X  0.758
1999 Yang H, Asplund MC, Kotz KT, Frei WH, Wilkens MJ, Harris J, Frei H, Poli R, Harris CB, Smith KM. Reaction mechanism of silicon-hydrogen bond activation studied using femtosecond to nanosecond IR spectroscopy and Ab initio methods Chemtracts. 12: 346-353. DOI: 10.1021/Ja980692F  0.772
1999 Yang H, Kotz KT, Asplund MC, Wilkens MJ, Harris CB. Ultrafast infrared studies of bond activation in organometallic complexes Accounts of Chemical Research. 32: 551-560. DOI: 10.1021/Ar970133Y  0.81
1997 Bromberg SE, Yang H, Asplund MC, Lian T, McNamara BK, Kotz KT, Yeston JS, Wilkens M, Frei H, Bergman RG, Harris CB. The mechanism of a C-H bond activation reaction in room-temperature alkane solution Science. 278: 260-263. DOI: 10.1126/Science.278.5336.260  0.791
1997 Yang H, Kotz KT, Asplund MC, Harris CB. Femtosecond infrared studies of silane silicon-hydrogen bond activation Journal of the American Chemical Society. 119: 9564-9565. DOI: 10.1021/Ja9716362  0.801
1996 Lian T, Bromberg SE, Asplund MC, Yang H, Harris CB. Femtosecond infrared studies of the dissociation and dynamics of transition metal carbonyls in solution Journal of Physical Chemistry. 100: 11994-12001. DOI: 10.1021/Jp9618035  0.78
1996 Lian T, Bromberg SE, Yang H, Proulx G, Bergman RG, Harris CB. Femtosecond IR studies of alkane C-H bond activation by organometallic compounds: Direct observation of reactive intermediates in room temperature solutions Journal of the American Chemical Society. 118: 3769-3770. DOI: 10.1021/Ja9541591  0.662
1996 Lian T, Yang H, Asplund M, Bromberg SE, Harris CB. Femtosecond IR studies of solvation by probing the solvent Springer Series in Chemical Physics. 62: 300-301. DOI: 10.1007/978-3-642-80314-7_131  0.549
1996 Lian T, Bromberg SE, Yang H, Asplund M, Bergman RG, Harris CB. Femtosecond IR studies of alkane C-H bond activation by organometallic compounds Springer Series in Chemical Physics. 62: 237-238. DOI: 10.1007/978-3-642-80314-7_102  0.792
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