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Haw Yang, Ph.D. - Publications

Affiliations: 
Chemistry Princeton University, Princeton, NJ 
Area:
molecular dynamics
Website:
http://www.princeton.edu/~yanglab/

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li H, Yang H. Statistical Learning of Discrete States in Time Series. The Journal of Physical Chemistry. B. PMID 30632755 DOI: 10.1021/acs.jpcb.8b10561  0.68
2018 Li H, Yang H. Statistical Learning of Discrete States in Time Series. The Journal of Physical Chemistry. A. PMID 30586307 DOI: 10.1021/acs.jpca.8b10561  0.68
2018 Hong L, Li H, Yang H, Sengupta K. Nano-plasmonics and electronics co-integration in CMOS enabling a pill-sized multiplexed fluorescence microarray system. Biomedical Optics Express. 9: 5735-5758. PMID 30460159 DOI: 10.1364/BOE.9.005735  0.68
2018 Morrell TE, Rafalska-Metcalf IU, Yang H, Chu JW. Compound Molecular Logic in Accessing the Active Site of M. Tuberculosis Protein Tyrosine Phosphatase B. Journal of the American Chemical Society. PMID 30301350 DOI: 10.1021/jacs.8b08070  0.44
2018 Li H, Yang H. A versatile optical microscope for time-dependent single-molecule and single-particle spectroscopy. The Journal of Chemical Physics. 148: 123316. PMID 29604862 DOI: 10.1063/1.5009134  0.68
2017 Yin S, Song N, Yang H. Detection of Velocity and Diffusion Coefficient Change Points in Single-Particle Trajectories. Biophysical Journal. PMID 29241585 DOI: 10.1016/j.bpj.2017.11.008  0.44
2017 Alfermann J, Sun X, Mayerthaler F, Morrell TE, Dehling E, Volkmann G, Komatsuzaki T, Yang H, Mootz HD. FRET monitoring of a nonribosomal peptide synthetase. Nature Chemical Biology. PMID 28759017 DOI: 10.1038/nchembio.2435  0.68
2017 Song N, Yang H. Parallelization of Change Point Detection. The Journal of Physical Chemistry. A. PMID 28616980 DOI: 10.1021/acs.jpca.7b04378  0.44
2016 Sun X, Morrell TE, Yang H. The Extraction of Protein Conformational Modes From Distance Distributions Using Structurally Imputed Bayesian Data Augmentation. The Journal of Physical Chemistry. B. PMID 27642672 DOI: 10.1021/acs.jpcb.6b07767  0.68
2015 Welsher K, Yang H. Imaging the behavior of molecules in biological systems: breaking the 3D speed barrier with 3D multi-resolution microscopy. Faraday Discussions. PMID 26426758 DOI: 10.1039/c5fd00090d  1
2015 Welsher K, McManus SA, Hsia CH, Yin S, Yang H. Discovery of protein- and DNA-imperceptible nanoparticle hard coating using gel-based reaction tuning. Journal of the American Chemical Society. 137: 580-3. PMID 25562211 DOI: 10.1021/ja511297d  1
2014 Haas KR, Yang H, Chu JW. Trajectory Entropy of Continuous Stochastic Processes at Equilibrium. The Journal of Physical Chemistry Letters. 5: 999-1003. PMID 26270979 DOI: 10.1021/jz500111p  1
2014 Sun X, Li H, Alfermann J, Mootz HD, Yang H. Kinetics profiling of gramicidin S synthetase A, a member of nonribosomal peptide synthetases. Biochemistry. 53: 7983-9. PMID 25437123 DOI: 10.1021/bi501156m  1
2014 Sun X, Montiel D, Li H, Yang H. "Plug-and-go" strategy to manipulate streptavidin valencies. Bioconjugate Chemistry. 25: 1375-80. PMID 25082796 DOI: 10.1021/bc500296p  1
2014 Bregulla AP, Yang H, Cichos F. Stochastic localization of microswimmers by photon nudging. Acs Nano. 8: 6542-50. PMID 24861455 DOI: 10.1021/nn501568e  1
2014 Haas KR, Yang H, Chu JW. Analysis of trajectory entropy for continuous stochastic processes at equilibrium. The Journal of Physical Chemistry. B. 118: 8099-107. PMID 24780123 DOI: 10.1021/jp501133w  1
2014 Emerson NT, Hsia CH, Rafalska-Metcalf IU, Yang H. Mechanodelivery of nanoparticles to the cytoplasm of living cells. Nanoscale. 6: 4538-43. PMID 24664211 DOI: 10.1039/c3nr06468a  1
2014 Welsher K, Yang H. Multi-resolution 3D visualization of the early stages of cellular uptake of peptide-coated nanoparticles. Nature Nanotechnology. 9: 198-203. PMID 24561356 DOI: 10.1038/nnano.2014.12  1
2014 Tan YW, Hanson JA, Chu JW, Yang H. Confocal single-molecule FRET for protein conformational dynamics. Methods in Molecular Biology (Clifton, N.J.). 1084: 51-62. PMID 24061915 DOI: 10.1007/978-1-62703-658-0_3  1
2013 Haas KR, Yang H, Chu JW. Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics. The Journal of Chemical Physics. 139: 121931. PMID 24089743 DOI: 10.1063/1.4820491  1
2013 Haas KR, Yang H, Chu JW. Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon. The Journal of Physical Chemistry. B. 117: 15591-605. PMID 23937300 DOI: 10.1021/jp405983d  1
2013 Montiel D, Yates EV, Sun L, Sampias MM, Malona J, Sorensen EJ, Yang H. Ligand synthesis and passivation for silver and large gold nanoparticles for single-particle-based sensing and spectroscopy. Methods in Molecular Biology (Clifton, N.J.). 1025: 237-50. PMID 23918342 DOI: 10.1007/978-1-62703-462-3_18  1
2013 Kawai S, Cooper D, Landes C, Mootz HD, Yang H, Komatsuzaki T. Numerical construction of estimators for single-molecule fluorescence measurements. The Journal of Physical Chemistry. B. 117: 8061-74. PMID 23777303 DOI: 10.1021/jp402328m  1
2012 Hanson JA, Brokaw J, Hayden CC, Chu JW, Yang H. Structural distributions from single-molecule measurements as a tool for molecular mechanics. Chemical Physics. 396: 61-71. PMID 22661822 DOI: 10.1016/j.chemphys.2011.06.014  1
2011 Hsia CH, Wuttig A, Yang H. An accessible approach to preparing water-soluble Mn2+-doped (CdSSe)ZnS (core)shell nanocrystals for ratiometric temperature sensing. Acs Nano. 5: 9511-22. PMID 22032176 DOI: 10.1021/nn2025622  1
2011 Yang JM, Yang H, Lin L. Quantum dot nano thermometers reveal heterogeneous local thermogenesis in living cells. Acs Nano. 5: 5067-71. PMID 21574616 DOI: 10.1021/nn201142f  1
2011 Tan YW, Yang H. Seeing the forest for the trees: fluorescence studies of single enzymes in the context of ensemble experiments. Physical Chemistry Chemical Physics : Pccp. 13: 1709-21. PMID 21183988 DOI: 10.1039/c0cp02412k  1
2010 Chen B, Sysoeva TA, Chowdhury S, Guo L, De Carlo S, Hanson JA, Yang H, Nixon BT. Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. Structure (London, England : 1993). 18: 1420-30. PMID 21070941 DOI: 10.1016/j.str.2010.08.018  1
2010 Duderstadt KE, Mott ML, Crisona NJ, Chuang K, Yang H, Berger JM. Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator. The Journal of Biological Chemistry. 285: 28229-39. PMID 20595381 DOI: 10.1074/jbc.M110.147975  1
2010 Flynn EM, Hanson JA, Alber T, Yang H. Dynamic active-site protection by the M. tuberculosis protein tyrosine phosphatase PtpB lid domain. Journal of the American Chemical Society. 132: 4772-80. PMID 20230004 DOI: 10.1021/ja909968n  1
2010 Yang H. Progress in single-molecule spectroscopy in cells. Current Opinion in Chemical Biology. 14: 3-9. PMID 19896891 DOI: 10.1016/j.cbpa.2009.10.015  1
2009 Li CB, Yang H, Komatsuzaki T. New quantification of local transition heterogeneity of multiscale complex networks constructed from single-molecule time series. The Journal of Physical Chemistry. B. 113: 14732-41. PMID 19827784 DOI: 10.1021/jp9059483  1
2009 Holman HY, Miles R, Hao Z, Wozei E, Anderson LM, Yang H. Real-time chemical imaging of bacterial activity in biofilms using open-channel microfluidics and synchrotron FTIR spectromicroscopy. Analytical Chemistry. 81: 8564-70. PMID 19775125 DOI: 10.1021/ac9015424  1
2009 Zhang K, Zhang W, Yang CY, Yang H. Bipolar cellular morphology of malignant melanoma in unstained human melanoma skin tissue. Journal of Biomedical Optics. 14: 024042. PMID 19405770 DOI: 10.1117/1.3120491  1
2009 Tan YW, Hanson JA, Yang H. Direct Mg(2+) binding activates adenylate kinase from Escherichia coli. The Journal of Biological Chemistry. 284: 3306-13. PMID 19029291 DOI: 10.1074/jbc.M803658200  1
2008 Anderson LM, Yang H. A simplified model for lysogenic regulation through DNA looping. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2008: 607-10. PMID 19162729 DOI: 10.1109/IEMBS.2008.4649226  1
2008 Yang H. Detection and characterization of dynamical heterogeneity in an event series using wavelet correlation. The Journal of Chemical Physics. 129: 074701. PMID 19044786 DOI: 10.1063/1.2969074  1
2008 Hanson JA, Yang H. Quantitative evaluation of cross correlation between two finite-length time series with applications to single-molecule FRET. The Journal of Physical Chemistry. B. 112: 13962-70. PMID 18847232 DOI: 10.1021/jp804440y  1
2008 Montiel D, Yang H. Observation of correlated emission intensity and polarization fluctuations in single CdSe/ZnS quantum dots. The Journal of Physical Chemistry. A. 112: 9352-5. PMID 18693717 DOI: 10.1021/jp802317a  1
2008 Cang H, Montiel D, Xu CS, Yang H. Observation of spectral anisotropy of gold nanoparticles. The Journal of Chemical Physics. 129: 044503. PMID 18681656 DOI: 10.1063/1.2958912  1
2008 Hanson JA, Yang H. A general statistical test for correlations in a finite-length time series. The Journal of Chemical Physics. 128: 214101. PMID 18537409 DOI: 10.1063/1.2931943  1
2008 Anderson LM, Yang H. DNA looping can enhance lysogenic CI transcription in phage lambda. Proceedings of the National Academy of Sciences of the United States of America. 105: 5827-32. PMID 18391225 DOI: 10.1073/pnas.0705570105  1
2008 Li CB, Yang H, Komatsuzaki T. Multiscale complex network of protein conformational fluctuations in single-molecule time series. Proceedings of the National Academy of Sciences of the United States of America. 105: 536-41. PMID 18178627 DOI: 10.1073/pnas.0707378105  1
2008 Xu CS, Kim H, Hayden CC, Yang H. Joint statistical analysis of multichannel time series from single quantum dot-(Cy5)n constructs. The Journal of Physical Chemistry. B. 112: 5917-23. PMID 18095665 DOI: 10.1021/jp075642o  1
2007 Hanson JA, Duderstadt K, Watkins LP, Bhattacharyya S, Brokaw J, Chu JW, Yang H. Illuminating the mechanistic roles of enzyme conformational dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 18055-60. PMID 17989222 DOI: 10.1073/pnas.0708600104  1
2007 Cang H, Xu CS, Montiel D, Yang H. Guiding a confocal microscope by single fluorescent nanoparticles. Optics Letters. 32: 2729-31. PMID 17873950 DOI: 10.1364/OL.32.002729  1
2007 Li S, Zhang K, Yang JM, Lin L, Yang H. Single quantum dots as local temperature markers. Nano Letters. 7: 3102-5. PMID 17727300 DOI: 10.1021/nl071606p  1
2007 Xu CS, Kim H, Yang H, Hayden CC. Multiparameter fluorescence spectroscopy of single quantum dot-dye FRET hybrids. Journal of the American Chemical Society. 129: 11008-9. PMID 17705496 DOI: 10.1021/ja074279w  1
2007 Yang H. Single-particle light scattering: imaging and dynamical fluctuations in the polarization and spectral response. The Journal of Physical Chemistry. A. 111: 4987-97. PMID 17508729 DOI: 10.1021/jp071129z  1
2006 Watkins LP, Chang H, Yang H. Quantitative single-molecule conformational distributions: a case study with poly-(L-proline). The Journal of Physical Chemistry. A. 110: 5191-203. PMID 16610843 DOI: 10.1021/jp055886d  1
2006 Zhang K, Chang H, Fu A, Alivisatos AP, Yang H. Continuous distribution of emission states from single CdSe/ZnS quantum dots. Nano Letters. 6: 843-7. PMID 16608295 DOI: 10.1021/nl060483q  1
2006 Ji N, Zhang K, Yang H, Shen YR. Three-dimensional chiral imaging by sum-frequency generation. Journal of the American Chemical Society. 128: 3482-3. PMID 16536497 DOI: 10.1021/ja057775y  1
2005 Zhang K, Yang H. Photon-by-photon determination of emission bursts from diffusing single chromophores. The Journal of Physical Chemistry. B. 109: 21930-7. PMID 16853850 DOI: 10.1021/jp0546047  1
2005 Watkins LP, Yang H. Detection of intensity change points in time-resolved single-molecule measurements. The Journal of Physical Chemistry. B. 109: 617-28. PMID 16851054 DOI: 10.1021/jp0467548  1
2004 Fu A, Micheel CM, Cha J, Chang H, Yang H, Alivisatos AP. Discrete nanostructures of quantum dots/Au with DNA. Journal of the American Chemical Society. 126: 10832-3. PMID 15339154 DOI: 10.1021/ja046747x  1
2004 Watkins LP, Yang H. Information bounds and optimal analysis of dynamic single molecule measurements. Biophysical Journal. 86: 4015-29. PMID 15189897 DOI: 10.1529/biophysj.103.037739  1
2003 Yang H, Luo G, Karnchanaphanurach P, Louie TM, Rech I, Cova S, Xun L, Xie XS. Protein conformational dynamics probed by single-molecule electron transfer. Science (New York, N.Y.). 302: 262-6. PMID 14551431 DOI: 10.1126/science.1086911  1
2002 Asplund MC, Snee PT, Yeston JS, Wilkens MJ, Payne CK, Yang H, Kotz KT, Frei H, Bergman RG, Harris CB. Ultrafast UV pump/IR probe studies of C-H activation in linear, cyclic, and aryl hydrocarbons. Journal of the American Chemical Society. 124: 10605-12. PMID 12197763 DOI: 10.1021/ja020418s  1
2002 Louie TM, Yang H, Karnchanaphanurach P, Xie XS, Xun L. FAD is a preferred substrate and an inhibitor of Escherichia coli general NAD(P)H:flavin oxidoreductase. The Journal of Biological Chemistry. 277: 39450-5. PMID 12177066 DOI: 10.1074/jbc.M206339200  1
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