☰

Qiang Cui, Ph.D. - Publications

Affiliations: 
Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
computational chemistry and biophysics
Website:
http://www.chem.wisc.edu/users/cui
Tree Info Similar researchers PubMed Report error

237/500 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Xia Q, Perera HA, Bolarinho R, Piskulich ZA, Guo Z, Yin J, He H, Li M, Ge X, Cui Q, Ramström O, Yan M, Cheng JX. Click-free imaging of carbohydrate trafficking in live cells using an azido photothermal probe. Biorxiv : the Preprint Server For Biology. PMID 38559219 DOI: 10.1101/2024.03.08.584185  0.71
2024 Corbeski I, Vargas-Rosales PA, Bedi RK, Deng J, Coelho D, Braud E, Iannazzo L, Li Y, Huang D, Ethève-Quelquejeu M, Cui Q, Caflisch A. The catalytic mechanism of the RNA methyltransferase METTL3. Elife. 12. PMID 38470714 DOI: 10.7554/eLife.92537  0.517
2023 Vuong VQ, Aradi B, Niklasson AMN, Cui Q, Irle S. Multipole Expansion of Atomic Electron Density Fluctuation Interactions in the Density-Functional Tight-Binding Method. Journal of Chemical Theory and Computation. 19: 7592-7605. PMID 37890454 DOI: 10.1021/acs.jctc.3c00778  0.493
2023 Corbeski I, Vargas-Rosales PA, Bedi RK, Deng J, Coelho D, Braud E, Iannazzo L, Li Y, Huang D, Ethève-Quelquejeu M, Cui Q, Caflisch A. The catalytic mechanism of the RNA methyltransferase METTL3. Biorxiv : the Preprint Server For Biology. PMID 37732228 DOI: 10.1101/2023.09.06.556513  0.518
2023 Liu Z, Yethiraj A, Cui Q. Sensitive and selective polymer condensation at membrane surface driven by positive co-operativity. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212516120. PMID 37018196 DOI: 10.1073/pnas.2212516120  0.457
2023 Kesner LA, Piskulich ZA, Cui Q, Rosenzweig Z. Untangling the Interactions between Anionic Polystyrene Nanoparticles and Lipid Membranes Using Laurdan Fluorescence Spectroscopy and Molecular Simulations. Journal of the American Chemical Society. PMID 37011179 DOI: 10.1021/jacs.2c13403  0.726
2022 Piskulich ZA, Cui Q. Machine Learning-Assisted Phase Transition Temperatures from Generalized Replica Exchange Simulations of Dry Martini Lipid Bilayers. The Journal of Physical Chemistry Letters. 13: 6481-6486. PMID 35819105 DOI: 10.1021/acs.jpclett.2c01654  0.719
2020 Liang D, Dahal U, Zhang YK, Lochbaum C, Ray D, Hamers RJ, Pedersen JA, Cui Q. Interfacial water and ion distribution determine potential and binding affinity of nanoparticles to biomolecules. Nanoscale. PMID 32852025 DOI: 10.1039/D0Nr03792C  0.341
2020 Ito S, Cui Q. Multi-level free energy simulation with a staged transformation approach. The Journal of Chemical Physics. 153: 044115. PMID 32752685 DOI: 10.1063/5.0012494  0.323
2020 Jennings J, Carter MCD, Son CY, Cui Q, Lynn DM, Mahanthappa MK. Protonation-Driven Aqueous Lyotropic Self-Assembly of Synthetic Six-Tail Lipidoids. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32649210 DOI: 10.1021/Acs.Langmuir.0C01369  0.734
2020 Kwon B, Mandal T, Elkins MR, Oh Y, Cui Q, Hong M. Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations. Journal of Molecular Biology. PMID 32592698 DOI: 10.1016/J.Jmb.2020.06.017  0.312
2020 Cai X, Son CY, Mao J, Kaur D, Zhang Y, Khaniya U, Cui Q, Gunner MR. Identifying the proton loading site cluster in the Ba3 cytochrome c oxidase that loads and traps protons. Biochimica Et Biophysica Acta. Bioenergetics. 148239. PMID 32531221 DOI: 10.1016/J.Bbabio.2020.148239  0.743
2020 Mandal T, Lough W, Spagnolie SE, Audhya A, Cui Q. Molecular Simulation of Mechanical Properties and Membrane Activities of the ESCRT-III Complexes. Biophysical Journal. PMID 32078797 DOI: 10.1016/J.Bpj.2020.01.033  0.337
2019 Dalchand N, Cui Q, Geiger FM. Electrostatics, Hydrogen Bonding, and Molecular Structure at Polycation and Peptide:Lipid Membrane Interfaces. Acs Applied Materials & Interfaces. PMID 31889444 DOI: 10.1021/Acsami.9B17431  0.357
2019 Roston D, Demapan D, Cui Q. Extensive free-energy simulations identify water as the base in nucleotide addition by DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. PMID 31757846 DOI: 10.1073/Pnas.1914613116  0.368
2019 Son CY, McDaniel JG, Cui Q, Yethiraj A. Proper Thermal Equilibration of Simulations with Drude Polarizable Models : Temperature Grouped Dual-Nos ́e-Hoover Thermostat. The Journal of Physical Chemistry Letters. PMID 31722528 DOI: 10.1021/Acs.Jpclett.9B02983  0.783
2019 Chen H, Pan J, Gandhi DM, Dockendorff C, Cui Q, Chanda B, Henzler-Wildman KA. NMR Structural Analysis of Isolated Shaker Voltage-Sensing Domain in LPPG Micelles. Biophysical Journal. PMID 31301804 DOI: 10.1016/J.Bpj.2019.06.020  0.337
2019 Watanabe HC, Cui Q. Quantitative analysis of QM/MM boundary artifacts and correction in adaptive QM/MM simulations. Journal of Chemical Theory and Computation. PMID 31095912 DOI: 10.1021/Acs.Jctc.9B00180  0.355
2018 Zhu L, Cui Q, Xiao H, Liao X, Chen X. Gating and inactivation of mechanosensitive channels of small conductance: A continuum mechanics study. Journal of the Mechanical Behavior of Biomedical Materials. 90: 502-514. PMID 30453114 DOI: 10.1016/J.Jmbbm.2018.10.040  0.345
2018 Vujović M, Huynh M, Steiner S, Garcia-Fernandez P, Elstner M, Cui Q, Gruden M. Exploring the applicability of density functional tight binding to transition metal ions. Parameterization for nickel with the spin-polarized DFTB3 model. Journal of Computational Chemistry. PMID 30299559 DOI: 10.1002/Jcc.25614  0.316
2018 Roston D, Lu X, Fang D, Demapan D, Cui Q. Analysis of Phosphoryl-Transfer Enzymes with QM/MM Free Energy Simulations. Methods in Enzymology. 607: 53-90. PMID 30149869 DOI: 10.1016/Bs.Mie.2018.05.005  0.531
2018 McGeachy AC, Caudill ER, Liang D, Cui Q, Pedersen JA, Geiger FM. Counting charges on membrane-bound peptides. Chemical Science. 9: 4285-4298. PMID 29780560 DOI: 10.1039/C8Sc00804C  0.345
2018 Cai X, Haider K, Lu J, Radic S, Son CY, Cui Q, Gunner MR. Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase. Biochimica Et Biophysica Acta. PMID 29778689 DOI: 10.1016/J.Bbabio.2018.05.010  0.742
2018 Dogangun M, Ohno PE, Liang D, McGeachy AC, Bé AG, Dalchand N, Li T, Cui Q, Geiger FM. Hydrogen Bond Networks Near Supported Lipid Bilayers from Vibrational Sum Frequency Generation Experiments and Atomistic Simulations. The Journal of Physical Chemistry. B. PMID 29688732 DOI: 10.1021/Acs.Jpcb.8B02138  0.347
2018 Cui Q, Irle S, Musaev J. Keiji Morokuma (1934-2017). Angewandte Chemie (International Ed. in English). PMID 29392802 DOI: 10.1002/Anie.201800390  0.506
2018 Zheng Y, Cui Q. Multiple Pathways and Timescales for Conformational Transitions in apo-Adenylate Kinase. Journal of Chemical Theory and Computation. PMID 29378407 DOI: 10.1021/Acs.Jctc.7B01064  0.358
2018 Son CY, McDaniel JG, Cui Q, Yethiraj A. Conformational and Dynamic Properties of Poly(ethylene oxide) in BMIM+BF4–: A Microsecond Computer Simulation Study Using ab Initio Force Fields Macromolecules. 51: 5336-5345. DOI: 10.1021/Acs.Macromol.8B01002  0.565
2018 Xu Z, Wei Q, Zhao W, Cui Q, Sahai N. Essence of Small Molecule-Mediated Control of Hydroxyapatite Growth: Free Energy Calculations of Amino Acid Side Chain Analogues The Journal of Physical Chemistry C. 122: 4372-4380. DOI: 10.1021/Acs.Jpcc.7B12142  0.311
2017 Condon SGF, Mahbuba DA, Armstrong CR, Díaz-Vázquez G, Craven SJ, LaPointe LM, Khadria AS, Chadda R, Crooks JA, Rangarajan N, Weibel DB, Hoskins AA, Robertson JL, Cui Q, Senes A. The FtsLB sub-complex of the bacterial divisome is tetramer with an uninterrupted FtsL helix linking the transmembrane and periplasmic regions. The Journal of Biological Chemistry. PMID 29233891 DOI: 10.1074/Jbc.Ra117.000426  0.336
2017 Santos TMA, Lammers MG, Zhou M, Sparks IL, Rajendran M, Fang D, De Jesus CLY, Carneiro GFR, Cui Q, Weibel DB. Small molecule chelators reveal that iron starvation inhibits late stages of bacterial cytokinesis. Acs Chemical Biology. PMID 29227619 DOI: 10.1021/Acschembio.7B00560  0.424
2017 Liang D, Hong J, Fang D, Bennett JW, Mason SE, Hamers RJ, Cui Q. Analysis of the conformational properties of amine ligands at the gold/water interface with QM, MM and QM/MM simulations. Physical Chemistry Chemical Physics : Pccp. PMID 29226924 DOI: 10.1039/C7Cp06709G  0.543
2017 Christensen AS, Kromann JC, Jensen JH, Cui Q. Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods. The Journal of Chemical Physics. 147: 161704. PMID 29096452 DOI: 10.1063/1.4985605  0.323
2017 Son CY, Yethiraj A, Cui Q. Cavity hydration dynamics in cytochrome c oxidase and functional implications. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973914 DOI: 10.1073/Pnas.1707922114  0.798
2017 Gruden M, Andjeklović L, Jissy AK, Stepanović S, Zlatar M, Cui Q, Elstner M. Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules. Journal of Computational Chemistry. PMID 28736893 DOI: 10.1002/Jcc.24866  0.373
2017 Troiano JM, McGeachy AC, Olenick LL, Fang D, Liang D, Hong J, Kuech TR, Caudill E, Pedersen JA, Cui Q, Geiger FM. Quantifying the Electrostatics of Polycation-Lipid Bilayer Interactions. Journal of the American Chemical Society. PMID 28358209 DOI: 10.1021/Jacs.6B12887  0.51
2017 Lu X, Ovchinnikov V, Demapan D, Roston D, Cui Q. Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin. Biochemistry. PMID 28225609 DOI: 10.1021/Acs.Biochem.7B00016  0.388
2017 Hong J, Hamers RJ, Pedersen JA, Cui Q. A Hybrid Molecular Dynamics/Multiconformer Continuum Electrostatics (MD/MCCE) Approach for the Determination of Surface Charge of Nanomaterials The Journal of Physical Chemistry C. 121: 3584-3596. DOI: 10.1021/Acs.Jpcc.6B11537  0.342
2016 Zheng Y, Cui Q. Microscopic Mechanisms that Govern the Titration Response and pKa Values of Buried Residues in Staphylococcal Nuclease Mutants. Proteins. PMID 27862310 DOI: 10.1002/Prot.25213  0.38
2016 Goldschen-Ohm MP, Klenchin VA, White DS, Cowgill JB, Cui Q, Goldsmith RH, Chanda B. Structure and dynamics underlying elementary ligand binding events in human pacemaking channels. Elife. 5. PMID 27858593 DOI: 10.7554/Elife.20797  0.337
2016 Cui Q. Perspective: Quantum mechanical methods in biochemistry and biophysics. The Journal of Chemical Physics. 145: 140901. PMID 27782516 DOI: 10.1063/1.4964410  0.334
2016 Lu X, Fang D, Ito S, Okamoto Y, Ovchinnikov V, Cui Q. QM/MM free energy simulations: recent progress and challenges. Molecular Simulation. 42: 1056-1078. PMID 27563170 DOI: 10.1080/08927022.2015.1132317  0.53
2016 Roston D, Cui Q. Substrate and Transition State Binding in Alkaline Phosphatase Analyzed by Computation of Oxygen Isotope Effects. Journal of the American Chemical Society. PMID 27541005 DOI: 10.1021/Jacs.6B07347  0.357
2016 Roston D, Cui Q. QM/MM Analysis of Transition States and Transition State Analogues in Metalloenzymes. Methods in Enzymology. 577: 213-50. PMID 27498640 DOI: 10.1016/Bs.Mie.2016.05.016  0.332
2016 Cui Q, Hernandez R, Mason SE, Frauenheim T, Pedersen JA, Geiger FM. Sustainable Nanotechnology: Opportunities and Challenges for Theoretical/Computational Studies. The Journal of Physical Chemistry. B. PMID 27388532 DOI: 10.1021/Acs.Jpcb.6B03976  0.321
2016 Zhao W, Xu Z, Cui Q, Sahai N. Predicting the Structure-Activity Relationship of Hydroxyapatite-binding Peptides by Enhanced-sampling Molecular Simulation. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 27329793 DOI: 10.1021/Acs.Langmuir.6B01582  0.338
2016 Roston D, Demapan D, Cui Q. Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site. Journal of the American Chemical Society. PMID 27186960 DOI: 10.1021/Jacs.6B03156  0.382
2016 Kromann JC, Christensen AS, Cui Q, Jensen JH. Towards a barrier height benchmark set for biologically relevant systems. Peerj. 4: e1994. PMID 27168993 DOI: 10.7717/Peerj.1994  0.356
2016 Zhang L, Rajendram M, Weibel DB, Yethiraj A, Cui Q. Ionic Hydrogen Bonds and Lipid Packing Defects Determine the Binding Orientation and Insertion Depth of RecA on Multi-component Lipid Bilayers. The Journal of Physical Chemistry. B. PMID 27095675 DOI: 10.1021/Acs.Jpcb.6B02164  0.553
2016 Christensen AS, Kubař T, Cui Q, Elstner M. Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications. Chemical Reviews. PMID 27074247 DOI: 10.1021/Acs.Chemrev.5B00584  0.363
2016 Zhu L, Wu J, Liu L, Liu Y, Yan Y, Cui Q, Chen X. Gating mechanism of mechanosensitive channel of large conductance: a coupled continuum mechanical-continuum solvation approach. Biomechanics and Modeling in Mechanobiology. PMID 27009075 DOI: 10.1007/S10237-016-0783-4  0.371
2016 Bai H, Xue R, Bao H, Zhang L, Yethiraj A, Cui Q, Chapman ER. Different states of synaptotagmin regulate evoked versus spontaneous release. Nature Communications. 7: 10971. PMID 27001899 DOI: 10.1038/Ncomms10971  0.505
2016 Son CY, McDaniel JG, Schmidt JR, Cui Q, Yethiraj A. First Principles United Atom Force Field for the Ionic Liquid [BMIM][BF4] : An Alternative to Charge Scaling. The Journal of Physical Chemistry. B. PMID 26900644 DOI: 10.1021/Acs.Jpcb.5B12371  0.78
2016 Lu J, Hu L, Cheng J, Fang D, Wang C, Yu K, Jiang H, Cui Q, Xu Y, Luo C. A computational investigation on the substrate preference of ten-eleven-translocation 2 (TET2). Physical Chemistry Chemical Physics : Pccp. PMID 26799843 DOI: 10.1039/C5Cp07266B  0.511
2016 Klenchin VA, Alvarez-Baron CP, Cowgill J, Cui Q, Chanda B. Crystal Structure of the Unliganded form of Cyclic Nucleotide Binding Domain (CNBD) from HCN2 Channel Biophysical Journal. 110: 2-2. DOI: 10.1016/J.Bpj.2015.11.1526  0.31
2015 Jin H, Goyal P, Das AK, Gaus M, Meuwly M, Cui Q. Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 26624804 DOI: 10.1021/Acs.Jpcb.5B09656  0.679
2015 Gaus M, Jin H, Demapan D, Christensen AS, Goyal P, Elstner M, Cui Q. DFTB3 Parametrization for Copper: The Importance of Orbital Angular Momentum Dependence of Hubbard Parameters. Journal of Chemical Theory and Computation. 11: 4205-19. PMID 26575916 DOI: 10.1021/Acs.Jctc.5B00600  0.603
2015 Ngo V, da Silva MC, Kubillus M, Li H, Roux B, Elstner M, Cui Q, Salahub DR, Noskov SY. Quantum Effects in Cation Interactions with First and Second Coordination Shell Ligands in Metalloproteins. Journal of Chemical Theory and Computation. 11: 4992-5001. PMID 26574284 DOI: 10.1021/Acs.Jctc.5B00524  0.544
2015 Korkmaz EN, Taylor KC, Andreas MP, Ajay G, Heinze NT, Cui Q, Rayment I. A composite approach towards a complete model of the myosin rod. Proteins. PMID 26573747 DOI: 10.1002/Prot.24964  0.334
2015 Hu L, Lu J, Cheng J, Rao Q, Li Z, Hou H, Lou Z, Zhang L, Li W, Gong W, Liu M, Sun C, Yin X, Li J, Tan X, ... ... Cui Q, et al. Structural insight into substrate preference for TET-mediated oxidation. Nature. PMID 26524525 DOI: 10.1038/Nature15713  0.472
2015 Pham GH, Rana AS, Korkmaz EN, Trang VH, Cui Q, Strieter ER. Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities. Protein Science : a Publication of the Protein Society. PMID 26506216 DOI: 10.1002/Pro.2834  0.328
2015 Rajendram M, Zhang L, Reynolds BJ, Auer GK, Tuson HH, Ngo KV, Cox MM, Yethiraj A, Cui Q, Weibel DB. Anionic Phospholipids Stabilize RecA Filament Bundles in Escherichia coli. Molecular Cell. 60: 374-84. PMID 26481664 DOI: 10.1016/J.Molcel.2015.09.009  0.521
2015 Christensen AS, Elstner M, Cui Q. Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization. The Journal of Chemical Physics. 143: 084123. PMID 26328834 DOI: 10.1063/1.4929335  0.362
2015 Taylor KC, Buvoli M, Korkmaz EN, Buvoli A, Zheng Y, Heinze NT, Cui Q, Leinwand LA, Rayment I. Skip residues modulate the structural properties of the myosin rod and guide thick filament assembly. Proceedings of the National Academy of Sciences of the United States of America. PMID 26150528 DOI: 10.1073/Pnas.1505813112  0.345
2015 Korkmaz EN, Volkman BF, Cui Q. Interplay of Electrostatics and Hydrophobic Effects in the Metamorphic Protein Human Lymphotactin. The Journal of Physical Chemistry. B. PMID 26134347 DOI: 10.1021/Acs.Jpcb.5B02810  0.368
2015 Zheng Y, Cui Q. The histone H3 N-terminal tail: a computational analysis of the free energy landscape and kinetics. Physical Chemistry Chemical Physics : Pccp. 17: 13689-98. PMID 25942635 DOI: 10.1039/C5Cp01858G  0.33
2015 Cui QK, Liu WD, Liu P, Li XY, Zhang LQ, Ma LJ, Ren YF, Wu YP, Wang ZG. Arterial occlusion to treat basilar artery dissecting aneurysm. Neurologia I Neurochirurgia Polska. 49: 99-106. PMID 25890924 DOI: 10.1016/j.pjnns.2015.02.003  0.308
2015 Goyal P, Yang S, Cui Q. Microscopic basis for kinetic gating in Cytochrome c oxidase: insights from QM/MM analysis. Chemical Science (Royal Society of Chemistry : 2010). 6: 826-841. PMID 25678950 DOI: 10.1039/C4Sc01674B  0.614
2015 Xu Z, Yang Y, Zhao W, Wang Z, Landis WJ, Cui Q, Sahai N. Molecular mechanisms for intrafibrillar collagen mineralization in skeletal tissues. Biomaterials. 39: 59-66. PMID 25477172 DOI: 10.1016/J.Biomaterials.2014.10.048  0.302
2015 Lu X, Gaus M, Elstner M, Cui Q. Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications. The Journal of Physical Chemistry. B. 119: 1062-82. PMID 25178644 DOI: 10.1021/Jp506557R  0.377
2014 Zhang L, Yethiraj A, Cui Q. Free Energy Calculations for the Peripheral Binding of Proteins/Peptides to an Anionic Membrane. 1. Implicit Membrane Models. Journal of Chemical Theory and Computation. 10: 2845-59. PMID 26586509 DOI: 10.1021/Ct500218P  0.56
2014 Wolf S, Freier E, Cui Q, Gerwert K. Infrared spectral marker bands characterizing a transient water wire inside a hydrophobic membrane protein. The Journal of Chemical Physics. 141: 22D524. PMID 25494795 DOI: 10.1063/1.4902237  0.332
2014 Odoh SO, Bondarevsky GD, Karpus J, Cui Q, He C, Spezia R, Gagliardi L. UO₂²⁺ uptake by proteins: understanding the binding features of the super uranyl binding protein and design of a protein with higher affinity. Journal of the American Chemical Society. 136: 17484-94. PMID 25411020 DOI: 10.1021/Ja5087563  0.354
2014 Shen QT, Schuh AL, Zheng Y, Quinney K, Wang L, Hanna M, Mitchell JC, Otegui MS, Ahlquist P, Cui Q, Audhya A. Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly. The Journal of Cell Biology. 206: 763-77. PMID 25202029 DOI: 10.1083/Jcb.201403108  0.329
2014 Goyal P, Qian HJ, Irle S, Lu X, Roston D, Mori T, Elstner M, Cui Q. Molecular simulation of water and hydration effects in different environments: challenges and developments for DFTB based models. The Journal of Physical Chemistry. B. 118: 11007-27. PMID 25166899 DOI: 10.1021/Jp503372V  0.698
2014 Cui Q, Nussinov R. Making biomolecular simulations accessible in the post-Nobel Prize era. Plos Computational Biology. 10: e1003786. PMID 25122142 DOI: 10.1371/Journal.Pcbi.1003786  0.389
2014 Cui Q, Elstner M. Density functional tight binding: values of semi-empirical methods in an ab initio era. Physical Chemistry Chemical Physics : Pccp. 16: 14368-77. PMID 24850383 DOI: 10.1039/C4Cp00908H  0.334
2014 Gaus M, Lu X, Elstner M, Cui Q. Parameterization of DFTB3/3OB for Sulfur and Phosphorus for Chemical and Biological Applications. Journal of Chemical Theory and Computation. 10: 1518-1537. PMID 24803865 DOI: 10.1021/Ct401002W  0.378
2014 Mori T, Hamers RJ, Pedersen JA, Cui Q. Integrated Hamiltonian sampling: a simple and versatile method for free energy simulations and conformational sampling. The Journal of Physical Chemistry. B. 118: 8210-20. PMID 24641518 DOI: 10.1021/Jp501339T  0.317
2014 Jia C, Wu Z, Lietz CB, Liang Z, Cui Q, Li L. Gas-phase ion isomer analysis reveals the mechanism of peptide sequence scrambling. Analytical Chemistry. 86: 2917-24. PMID 24313304 DOI: 10.1021/Ac401578P  0.438
2014 Xu Z, Yang Y, Wang Z, Mkhonto D, Shang C, Liu ZP, Cui Q, Sahai N. Small molecule-mediated control of hydroxyapatite growth: free energy calculations benchmarked to density functional theory. Journal of Computational Chemistry. 35: 70-81. PMID 24272540 DOI: 10.1002/Jcc.23474  0.321
2014 Xu D, Cui Q, Guo H. Quantum mechanical/molecular mechanical studies of zinc hydrolases International Reviews in Physical Chemistry. 33: 1-41. DOI: 10.1080/0144235X.2014.889378  0.315
2014 Zhang L, Yethiraj A, Cui Q. Free energy calculations for the peripheral binding of proteins/peptides to an anionic membrane. 1. implicit membrane models Journal of Chemical Theory and Computation. 10: 2845-2859. DOI: 10.1021/ct500218p  0.483
2014 Cui Q. QM/MM Methods: Recent Developments and Application to Membrane Proteins and Molecular Motors Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2521  0.348
2014 Gaus M, Cui Q, Elstner M. Density functional tight binding: Application to organic and biological molecules Wiley Interdisciplinary Reviews: Computational Molecular Science. 4: 49-61. DOI: 10.1002/Wcms.1156  0.31
2013 Mori T, Hamers RJ, Pedersen JA, Cui Q. An Explicit Consideration of Desolvation is Critical to Binding Free Energy Calculations of Charged Molecules at Ionic Surfaces. Journal of Chemical Theory and Computation. 9: 5059-69. PMID 26583420 DOI: 10.1021/Ct400487E  0.356
2013 Jarecki BW, Zheng S, Zhang L, Li X, Zhou X, Cui Q, Tang W, Chanda B. Tethered spectroscopic probes estimate dynamic distances with subnanometer resolution in voltage-dependent potassium channels. Biophysical Journal. 105: 2724-32. PMID 24359744 DOI: 10.1016/J.Bpj.2013.11.010  0.341
2013 Goyal P, Lu J, Yang S, Gunner MR, Cui Q. Changing hydration level in an internal cavity modulates the proton affinity of a key glutamate in cytochrome c oxidase. Proceedings of the National Academy of Sciences of the United States of America. 110: 18886-91. PMID 24198332 DOI: 10.1073/Pnas.1313908110  0.622
2013 Wu Z, Cui Q, Yethiraj A. Why do arginine and lysine organize lipids differently? Insights from coarse-grained and atomistic simulations. The Journal of Physical Chemistry. B. 117: 12145-56. PMID 24024591 DOI: 10.1021/Jp4068729  0.61
2013 Sundlass NK, Eller CH, Cui Q, Raines RT. Contribution of electrostatics to the binding of pancreatic-type ribonucleases to membranes. Biochemistry. 52: 6304-12. PMID 23947917 DOI: 10.1021/Bi400619M  0.306
2013 Hou G, Cui Q. Stabilization of different types of transition states in a single enzyme active site: QM/MM analysis of enzymes in the alkaline phosphatase superfamily. Journal of the American Chemical Society. 135: 10457-69. PMID 23786365 DOI: 10.1021/Ja403293D  0.556
2013 Pang X, Han K, Cui Q. A simple but effective modeling strategy for structural properties of non-heme Fe(II) sites in proteins: test of force field models and application to proteins in the AlkB family. Journal of Computational Chemistry. 34: 1620-35. PMID 23666816 DOI: 10.1002/Jcc.23305  0.356
2013 Ruther RE, Cui Q, Hamers RJ. Conformational disorder enhances electron transfer through alkyl monolayers: ferrocene on conductive diamond. Journal of the American Chemical Society. 135: 5751-61. PMID 23530540 DOI: 10.1021/Ja312680P  0.309
2013 Daily MD, Yu H, Phillips GN, Cui Q. Allosteric activation transitions in enzymes and biomolecular motors: insights from atomistic and coarse-grained simulations. Topics in Current Chemistry. 337: 139-64. PMID 23468286 DOI: 10.1007/128_2012_409  0.507
2013 Yang L, Chao C, Tang W, Wang Z, Yu H, Cui Q, Zhou Z. [Effect of cryopreservation method on islets specific T cell responses in type 1 diabetic patient]. Zhong Nan Da Xue Xue Bao. Yi Xue Ban = Journal of Central South University. Medical Sciences. 38: 169-75. PMID 23456066 DOI: 10.3969/j.issn.1672-7347.2013.02.010  0.336
2013 Yoo J, Jackson MB, Cui Q. A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores. Biophysical Journal. 104: 841-52. PMID 23442963 DOI: 10.1016/J.Bpj.2012.12.043  0.522
2013 Lu X, Cui Q. Charging free energy calculations using the Generalized Solvent Boundary Potential (GSBP) and periodic boundary condition: a comparative analysis using ion solvation and oxidation free energy in proteins. The Journal of Physical Chemistry. B. 117: 2005-18. PMID 23347181 DOI: 10.1021/Jp309877Z  0.379
2013 Yoo J, Cui Q. Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association. Biophysical Journal. 104: 128-38. PMID 23332065 DOI: 10.1016/J.Bpj.2012.11.3813  0.531
2013 Yoo J, Cui Q. Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A. Biophysical Journal. 104: 117-27. PMID 23332064 DOI: 10.1016/J.Bpj.2012.11.3812  0.519
2013 Cui Q, Zhang L, Wu Z, Yethiraj A. Generation and sensing of membrane curvature: Where materials science and biophysics meet Current Opinion in Solid State and Materials Science. 17: 164-174. DOI: 10.1016/J.Cossms.2013.06.002  0.619
2013 Yang Y, Xu Z, Cui Q, Sahai N. Adsorption of Bone Sialoprotein on Hydroxyapatite-A Combination Study with Bioinformatics and Molecular Dynamics Simulations Biophysical Journal. 104: 230a. DOI: 10.1016/J.Bpj.2012.11.1298  0.343
2012 Hou G, Zhu X, Elstner M, Cui Q. A modified QM/MM Hamiltonian with the Self-Consistent-Charge Density-Functional-Tight-Binding Theory for highly charged QM regions. Journal of Chemical Theory and Computation. 8: 4293-4304. PMID 23275762 DOI: 10.1021/Ct300649F  0.624
2012 Gaus M, Cui Q, Elstner M. DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB). Journal of Chemical Theory and Computation. 7: 931-948. PMID 23204947 DOI: 10.1021/Ct100684S  0.349
2012 Xia F, Rudack T, Cui Q, Kötting C, Gerwert K. Detailed structure of the H2PO4(-)-guanosine diphosphate intermediate in Ras-GAP decoded from FTIR experiments by biomolecular simulations. Journal of the American Chemical Society. 134: 20041-4. PMID 23181905 DOI: 10.1021/Ja310496E  0.354
2012 Zienau J, Cui Q. Implementation of the solvent macromolecule boundary potential and application to model and realistic enzyme systems. The Journal of Physical Chemistry. B. 116: 12522-34. PMID 22985044 DOI: 10.1021/Jp308218M  0.398
2012 Zhao X, Liu Q, Du B, Li P, Cui Q, Han X, Du B, Yan D, Zhu X. A novel accessory molecule Trim59 involved in cytotoxicity of BCG-activated macrophages. Molecules and Cells. 34: 263-70. PMID 22949172 DOI: 10.1007/s10059-012-0089-z  0.334
2012 Daily MD, Makowski L, Phillips GN, Cui Q. Large-scale motions in the adenylate kinase solution ensemble: coarse-grained simulations and comparison with solution X-ray scattering. Chemical Physics. 396: 84-91. PMID 22711968 DOI: 10.1016/J.Chemphys.2011.08.015  0.318
2012 Xing Y, Nukaya M, Satyshur KA, Jiang L, Stanevich V, Korkmaz EN, Burdette L, Kennedy GD, Cui Q, Bradfield CA. Identification of the Ah-receptor structural determinants for ligand preferences. Toxicological Sciences : An Official Journal of the Society of Toxicology. 129: 86-97. PMID 22659362 DOI: 10.1093/Toxsci/Kfs194  0.318
2012 Mondal J, Zhu X, Cui Q, Yethiraj A. Sequence-dependent pKa shift induced by molecular self-assembly: insights from computer simulation. The Journal of Physical Chemistry. B. 116: 491-5. PMID 22121949 DOI: 10.1021/Jp2071953  0.61
2012 Hou G, Cui Q. QM/MM analysis suggests that Alkaline Phosphatase (AP) and nucleotide pyrophosphatase/phosphodiesterase slightly tighten the transition state for phosphate diester hydrolysis relative to solution: implication for catalytic promiscuity in the AP superfamily. Journal of the American Chemical Society. 134: 229-46. PMID 22097879 DOI: 10.1021/Ja205226D  0.509
2012 Li W, Rong R, Zhao S, Zhu X, Zhang K, Xiong X, Yu X, Cui Q, Li S, Chen L, Cai J, Du J. Proteomic analysis of metabolic, cytoskeletal and stress response proteins in human heart failure. Journal of Cellular and Molecular Medicine. 16: 59-71. PMID 21545686 DOI: 10.1111/j.1582-4934.2011.01336.x  0.301
2012 Meuwly M, Cui Q. Protein functional dynamics: From femtoseconds to milliseconds Chemical Physics. 396: 1-2. DOI: 10.1016/J.Chemphys.2011.09.021  0.488
2012 Riccardi D, Zhu X, Goyal P, Yang S, Hou G, Cui Q. Toward molecular models of proton pumping: Challenges, methods and relevant applications Science China Chemistry. 55: 3-18. DOI: 10.1007/S11426-011-4458-9  0.789
2011 Wu Z, Cui Q, Yethiraj A. A New Coarse-Grained Force Field for Membrane-Peptide Simulations. Journal of Chemical Theory and Computation. 7: 3793-802. PMID 26598270 DOI: 10.1021/Ct200593T  0.635
2011 Wu Y, Ma L, Cheley S, Bayley H, Cui Q, Chapman ER. Permeation of styryl dyes through nanometer-scale pores in membranes. Biochemistry. 50: 7493-502. PMID 21815625 DOI: 10.1021/Bi2006288  0.4
2011 Daily MD, Phillips GN, Cui Q. Interconversion of functional motions between mesophilic and thermophilic adenylate kinases. Plos Computational Biology. 7: e1002103. PMID 21779157 DOI: 10.1016/J.Bpj.2010.12.1159  0.332
2011 Goyal P, Ghosh N, Phatak P, Clemens M, Gaus M, Elstner M, Cui Q. Proton storage site in bacteriorhodopsin: new insights from quantum mechanics/molecular mechanics simulations of microscopic pK(a) and infrared spectra. Journal of the American Chemical Society. 133: 14981-97. PMID 21761868 DOI: 10.1021/Ja201568S  0.72
2011 Yang S, Cui Q. Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome C oxidase. Biophysical Journal. 101: 61-9. PMID 21723815 DOI: 10.1016/J.Bpj.2011.05.004  0.357
2011 Clemens M, Phatak P, Cui Q, Bondar AN, Elstner M. Role of Arg82 in the early steps of the bacteriorhodopsin proton-pumping cycle. The Journal of Physical Chemistry. B. 115: 7129-35. PMID 21561116 DOI: 10.1021/Jp201865K  0.322
2011 Goyal P, Elstner M, Cui Q. Application of the SCC-DFTB method to neutral and protonated water clusters and bulk water. The Journal of Physical Chemistry. B. 115: 6790-805. PMID 21526802 DOI: 10.1021/Jp202259C  0.594
2011 Ma L, Sundlass NK, Raines RT, Cui Q. Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis. Biochemistry. 50: 266-75. PMID 21121696 DOI: 10.1021/Bi101096K  0.429
2011 Liu C, Wu ZZ, Shu CL, Li DF, Zeng YJ, Cui Q, Jiang WH. Experimental investigation of HGF inhibiting glial scar in vitro. Cellular and Molecular Neurobiology. 31: 259-68. PMID 21076937 DOI: 10.1007/s10571-010-9616-7  0.301
2011 Wu Z, Cui Q, Yethiraj A. Driving force for the association of hydrophobic peptides: The importance of electrostatic interactions in coarse-grained water models Journal of Physical Chemistry Letters. 2: 1794-1798. DOI: 10.1021/Jz2006622  0.623
2011 Wu Z, Cui Q, Yethiraj A. A new coarse-grained force field for membrane-peptide simulations Journal of Chemical Theory and Computation. 7: 3793-3802. DOI: 10.1021/ct200593t  0.556
2010 Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C. Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature. 468: 330-3. PMID 21068844 DOI: 10.1038/Nature09497  0.505
2010 Riccardi D, Cui Q, Phillips GN. Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse X-ray scattering Biophysical Journal. 99: 2616-2625. PMID 20959103 DOI: 10.1016/J.Bpj.2010.08.013  0.578
2010 Mondal J, Zhu X, Cui Q, Yethiraj A. Sequence-dependent interaction of β-peptides with membranes. The Journal of Physical Chemistry. B. 114: 13585-92. PMID 20882985 DOI: 10.1021/Jp1070242  0.611
2010 Yoo J, Cui Q. Chemical versus mechanical perturbations on the protonation state of arginine in complex lipid membranes: insights from microscopic pKa calculations. Biophysical Journal. 99: 1529-38. PMID 20816065 DOI: 10.1016/J.Bpj.2010.06.048  0.538
2010 Hou G, Zhu X, Cui Q. An implicit solvent model for SCC-DFTB with Charge-Dependent Radii. Journal of Chemical Theory and Computation. 6: 2303-2314. PMID 20711513 DOI: 10.1021/Ct1001818  0.644
2010 Wu Z, Cui Q, Yethiraj A. A new coarse-grained model for water: the importance of electrostatic interactions. The Journal of Physical Chemistry. B. 114: 10524-9. PMID 20701383 DOI: 10.1021/Jp1019763  0.624
2010 Daily MD, Phillips GN, Cui Q. Many local motions cooperate to produce the adenylate kinase conformational transition. Journal of Molecular Biology. 400: 618-31. PMID 20471396 DOI: 10.1016/J.Jmb.2010.05.015  0.361
2010 Yang Y, Cui Q, Sahai N. How does bone sialoprotein promote the nucleation of hydroxyapatite? A molecular dynamics study using model peptides of different conformations. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 9848-59. PMID 20438109 DOI: 10.1021/La100192Z  0.311
2010 Van Wynsberghe AW, Cui Q. Conservation and variation of structural flexibility in protein families. Structure (London, England : 1993). 18: 281-3. PMID 20223210 DOI: 10.1016/J.Str.2010.02.001  0.695
2010 Zhu X, Koenig P, Hoffmann M, Yethiraj A, Cui Q. Establishing effective simulation protocols for beta- and alpha/beta-peptides. III. Molecular mechanical model for acyclic beta-amino acids. Journal of Computational Chemistry. 31: 2063-77. PMID 20175215 DOI: 10.1002/Jcc.21493  0.611
2010 Ma L, Pegram L, Record MT, Cui Q. Preferential interactions between small solutes and the protein backbone: a computational analysis. Biochemistry. 49: 1954-62. PMID 20121154 DOI: 10.1021/Bi9020082  0.442
2010 Riccardi D, Yang S, Cui Q. Proton transfer function of carbonic anhydrase: Insights from QM/MM simulations Biochimica Et Biophysica Acta - Proteins and Proteomics. 1804: 342-351. PMID 19679196 DOI: 10.1016/J.Bbapap.2009.07.026  0.636
2010 Mondal J, Zhu X, Cui Q, Yethiraj A. Self-assembly of β-Peptides: Insight from the pair and many-body free energy of association Journal of Physical Chemistry C. 114: 13551-13556. DOI: 10.1021/Jp1040772  0.591
2010 Yang W, Cui Q, Min D, Li H. QM/MM Alchemical free energy simulations. Challenges and recent developments Annual Reports in Computational Chemistry. 6: 51-62. DOI: 10.1016/S1574-1400(10)06004-4  0.373
2010 Daily MD, Cui Q. The Adenylate Kinase Transition Requires Many Easy Motions, Not a Few Hard Ones Biophysical Journal. 98: 27a. DOI: 10.1016/J.Bpj.2009.12.160  0.317
2009 Tang Y, Chen X, Yoo J, Yethiraj A, Cui Q. NUMERICAL SIMULATION OF NANOINDENTATION AND PATCH CLAMP EXPERIMENTS ON MECHANOSENSITIVE CHANNELS OF LARGE CONDUCTANCE IN ESCHERICHIA COLI. Shi Yan Li Xue = Journal of Experimental Mechanics / Zhongguo Li Xue Xue Hui, Zhongguo Ke Xue Ji Shu Da Xue Zhu Ban. 49: 35-46. PMID 21874098 DOI: 10.1007/S11340-007-9060-X  0.652
2009 Yoo J, Cui Q. Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations. Biophysical Journal. 97: 2267-76. PMID 19843459 DOI: 10.1016/J.Bpj.2009.07.051  0.52
2009 Li Z, Wang ZG, Bian C, Chen XD, Li JW, Chen X, Han B, Hou GF, Chu J, Cui Q. Interferon regulatory factor-1 exerts inhibitory effect on neointimal formation after vascular injury. Chinese Medical Sciences Journal = Chung-Kuo I Hsã¼Eh K'O Hsã¼Eh Tsa Chih / Chinese Academy of Medical Sciences. 24: 91-6. PMID 19618605 DOI: 10.1016/S1001-9294(09)60068-7  0.403
2009 Yang Y, Cui Q. The hydrolysis activity of adenosine triphosphate in myosin: a theoretical analysis of anomeric effects and the nature of the transition state. The Journal of Physical Chemistry. A. 113: 12439-46. PMID 19534504 DOI: 10.1021/Jp902949F  0.386
2009 Brooks BR, Brooks CL, Mackerell AD, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, et al. CHARMM: the biomolecular simulation program. Journal of Computational Chemistry. 30: 1545-614. PMID 19444816 DOI: 10.1002/Jcc.21287  0.771
2009 Ma L, Yethiraj A, Chen X, Cui Q. A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability. Biophysical Journal. 96: 3543-54. PMID 19413960 DOI: 10.1016/J.Bpj.2009.01.047  0.594
2009 Yang Y, Cui Q. Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol. The Journal of Physical Chemistry. B. 113: 4930-9. PMID 19292432 DOI: 10.1021/Jp810755P  0.373
2009 Ghosh N, Prat-Resina X, Gunner MR, Cui Q. Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model. Biochemistry. 48: 2468-85. PMID 19243111 DOI: 10.1021/Bi8021284  0.617
2009 Riccardi D, Cui Q, Phillips GN. Application of elastic network models to proteins in the crystalline state. Biophysical Journal. 96: 464-75. PMID 19167297 DOI: 10.1016/J.Bpj.2008.10.010  0.604
2009 Riccardi D, Cui Q, Phillips GN. Application of elastic network models to proteins in the crystalline state (Biophysical Journal (2009) 96, (464-475)) Biophysical Journal. 96: 2548. DOI: 10.1016/j.bpj.2009.02.007  0.516
2008 Yang Y, Yu H, York D, Elstner M, Cui Q. Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization. Journal of Chemical Theory and Computation. 4: 2067-2084. PMID 19352441 DOI: 10.1021/Ct800330D  0.674
2008 Phatak P, Ghosh N, Yu H, Cui Q, Elstner M. Amino acids with an intermolecular proton bond as proton storage site in bacteriorhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 105: 19672-7. PMID 19064907 DOI: 10.1073/Pnas.0810712105  0.656
2008 Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Mechanosensitive channels: insights from continuum-based simulations. Cell Biochemistry and Biophysics. 52: 1-18. PMID 18787764 DOI: 10.1007/S12013-008-9024-5  0.634
2008 Yang Y, Yu H, Cui Q. Extensive conformational transitions are required to turn on ATP hydrolysis in myosin. Journal of Molecular Biology. 381: 1407-20. PMID 18619975 DOI: 10.1016/J.Jmb.2008.06.071  0.522
2008 Cui Q, Karplus M. Allostery and cooperativity revisited. Protein Science : a Publication of the Protein Society. 17: 1295-307. PMID 18560010 DOI: 10.1110/Ps.03259908  0.566
2008 Ghosh N, Cui Q. pKa of residue 66 in Staphylococal nuclease. I. Insights from QM/MM simulations with conventional sampling. The Journal of Physical Chemistry. B. 112: 8387-97. PMID 18540669 DOI: 10.1021/Jp800168Z  0.616
2008 Zhu X, Koenig P, Gellman SH, Yethiraj A, Cui Q. Establishing effective simulation protocols for beta- and alpha/beta-peptides. II. Molecular mechanical (MM) model for a cyclic beta-residue. The Journal of Physical Chemistry. B. 112: 5439-48. PMID 18402479 DOI: 10.1021/Jp077601Y  0.616
2008 Chen X, Cui Q, Tang Y, Yoo J, Yethiraj A. Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework. Biophysical Journal. 95: 563-80. PMID 18390626 DOI: 10.1529/Biophysj.107.128488  0.665
2008 Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Gating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions. Biophysical Journal. 95: 581-96. PMID 18390625 DOI: 10.1529/Biophysj.107.128496  0.666
2008 Riccardi D, König P, Guo H, Cui Q. Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor. Biochemistry. 47: 2369-78. PMID 18247480 DOI: 10.1021/Bi701950J  0.644
2008 Yoo J, Cui Q. Does arginine remain protonated in the lipid membrane? Insights from microscopic pKa calculations. Biophysical Journal. 94: L61-3. PMID 18199662 DOI: 10.1529/Biophysj.107.122945  0.532
2007 Nam K, Cui Q, Gao J, York DM. Specific Reaction Parametrization of the AM1/d Hamiltonian for Phosphoryl Transfer Reactions:  H, O, and P Atoms. Journal of Chemical Theory and Computation. 3: 486-504. PMID 26637030 DOI: 10.1021/Ct6002466  0.682
2007 Zhu X, Yethiraj A, Cui Q. Establishing Effective Simulation Protocols for β- and α/β-Mixed Peptides. I. QM and QM/MM Models. Journal of Chemical Theory and Computation. 3: 1538-49. PMID 26633224 DOI: 10.1021/Ct600352E  0.613
2007 Yu H, Cui Q. The vibrational spectra of protonated water clusters: a benchmark for self-consistent-charge density-functional tight binding. The Journal of Chemical Physics. 127: 234504. PMID 18154397 DOI: 10.1063/1.2806992  0.528
2007 Yang Y, Yu H, York D, Cui Q, Elstner M. Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction. The Journal of Physical Chemistry. A. 111: 10861-73. PMID 17914769 DOI: 10.1021/Jp074167R  0.649
2007 Xu D, Guo H, Cui Q. Antibiotic deactivation by a dizinc beta-lactamase: mechanistic insights from QM/MM and DFT studies. Journal of the American Chemical Society. 129: 10814-22. PMID 17691780 DOI: 10.1021/Ja072532M  0.36
2007 Ma L, Cui Q. Activation mechanism of a signaling protein at atomic resolution from advanced computations. Journal of the American Chemical Society. 129: 10261-8. PMID 17655236 DOI: 10.1021/Ja073059F  0.483
2007 Cai ZL, Lopez P, Reimers JR, Cui Q, Elstner M. Application of the computationally efficient self-consistent-charge density-functional tight-binding method to magnesium-containing molecules. The Journal of Physical Chemistry. A. 111: 5743-50. PMID 17555305 DOI: 10.1021/Jp071701M  0.347
2007 Riccardi D, Cui Q. pK a analysis for the zinc-bound water in human carbonic anhydrase II: Benchmark for "multiscale" QM/MM simulations and mechanistic implications Journal of Physical Chemistry A. 111: 5703-5711. PMID 17506534 DOI: 10.1021/Jp070699W  0.632
2007 Yang Y, Cui Q. Interactions between phosphate and water in solution: a natural bond orbital based analysis in a QM/MM framework. The Journal of Physical Chemistry. B. 111: 3999-4002. PMID 17391023 DOI: 10.1021/Jp070706G  0.376
2007 Xu D, Guo H, Cui Q. Antibiotic binding to dizinc beta-lactamase L1 from Stenotrophomonas maltophilia: SCC-DFTB/CHARMM and DFT studies. The Journal of Physical Chemistry. A. 111: 5630-6. PMID 17388313 DOI: 10.1021/Jp068746S  0.359
2007 Yu H, Ma L, Yang Y, Cui Q. Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residues. Plos Computational Biology. 3: e23. PMID 17305418 DOI: 10.1371/Journal.Pcbi.0030023  0.576
2007 Kondrashov DA, Van Wynsberghe AW, Bannen RM, Cui Q, Phillips GN. Protein structural variation in computational models and crystallographic data. Structure (London, England : 1993). 15: 169-77. PMID 17292835 DOI: 10.1016/J.Str.2006.12.006  0.716
2007 Yu H, Ma L, Yang Y, Cui Q. Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations. Plos Computational Biology. 3: e21. PMID 17291159 DOI: 10.1371/Journal.Pcbi.0030021  0.566
2006 Riccardi D, König P, Prat-Resina X, Yu H, Elstner M, Frauenheim T, Cui Q. "Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis. Journal of the American Chemical Society. 128: 16302-11. PMID 17165785 DOI: 10.1021/Ja065451J  0.683
2006 Ma L, Cui Q. The temperature dependence of salt-protein association is sequence specific. Biochemistry. 45: 14466-72. PMID 17128985 DOI: 10.1021/Bi0613067  0.426
2006 Van Wynsberghe AW, Cui Q. Interpreting correlated motions using normal mode analysis. Structure (London, England : 1993). 14: 1647-53. PMID 17098190 DOI: 10.1016/J.Str.2006.09.003  0.692
2006 Formaneck MS, Cui Q. The use of a generalized born model for the analysis of protein conformational transitions: a comparative study with explicit solvent simulations for chemotaxis Y protein (CheY). Journal of Computational Chemistry. 27: 1923-43. PMID 17019722 DOI: 10.1002/Jcc.20489  0.806
2006 Kondrashov DA, Cui Q, Phillips GN. Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data. Biophysical Journal. 91: 2760-7. PMID 16891367 DOI: 10.1529/Biophysj.106.085894  0.321
2006 Formaneck MS, Ma L, Cui Q. Effects of temperature and salt concentration on the structural stability of human lymphotactin: insights from molecular simulations. Journal of the American Chemical Society. 128: 9506-17. PMID 16848488 DOI: 10.1021/Ja061620O  0.782
2006 Tang Y, Cao G, Chen X, Yoo J, Yethiraj A, Cui Q. A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL. Biophysical Journal. 91: 1248-63. PMID 16731564 DOI: 10.1529/Biophysj.106.085985  0.664
2006 Riccardi D, Schaefer P, Yang Y, Yu H, Ghosh N, Prat-Resina X, König P, Li G, Xu D, Guo H, Elstner M, Cui Q. Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes. The Journal of Physical Chemistry. B. 110: 6458-69. PMID 16570942 DOI: 10.1021/Jp056361O  0.756
2006 Formaneck MS, Ma L, Cui Q. Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY). Proteins. 63: 846-67. PMID 16475196 DOI: 10.1002/Prot.20893  0.79
2006 König PH, Ghosh N, Hoffmann M, Elstner M, Tajkhorshid E, Frauenheim T, Cui Q. Toward theoretical analysis of long-range proton transfer kinetics in biomolecular pumps. The Journal of Physical Chemistry. A. 110: 548-63. PMID 16405327 DOI: 10.1021/Jp052328Q  0.607
2006 Cui Q. Theoretical and computational studies of vectorial processes in biomolecular systems Theoretical Chemistry Accounts. 116: 51-59. DOI: 10.1007/S00214-005-0022-Z  0.31
2005 Riccardi D, Schaefer P, Cui Q. PK a calculations in solution and proteins with QM/MM free energy perturbation simulations: A quantitative test of QM/MM protocols Journal of Physical Chemistry B. 109: 17715-17733. PMID 16853267 DOI: 10.1021/Jp0517192  0.665
2005 König PH, Hoffmann M, Frauenheim T, Cui Q. A critical evaluation of different QM/MM frontier treatments with SCC-DFTB as the QM method. Journal of Physical Chemistry B. 109: 9082-9095. PMID 16852081 DOI: 10.1021/Jp0442347  0.373
2005 Range K, Riccardi D, Cui Q, Elstner M, York DM. Benchmark calculations of proton affinities and gas-phase basicities of molecules important in the study of biological phosphoryl transfer. Physical Chemistry Chemical Physics : Pccp. 7: 3070-9. PMID 16186912 DOI: 10.1039/B504941E  0.715
2005 Van Wynsberghe AW, Cui Q. Comparison of mode analyses at different resolutions applied to nucleic acid systems. Biophysical Journal. 89: 2939-49. PMID 16100266 DOI: 10.1529/Biophysj.105.065664  0.712
2005 Schaefer P, Riccardi D, Cui Q. Reliable treatment of electrostatics in combined QM/MM simulation of macromolecules. The Journal of Chemical Physics. 123: 014905. PMID 16035867 DOI: 10.1063/1.1940047  0.629
2005 Li G, Cui Q. Direct determination of reaction paths and stationary points on potential of mean force surfaces. Journal of Molecular Graphics & Modelling. 24: 82-93. PMID 16005650 DOI: 10.1016/J.Jmgm.2005.06.001  0.334
2005 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst. Journal of the American Chemical Society. 127: 3100-9. PMID 15740149 DOI: 10.1021/Ja043460R  0.312
2004 Riccardi D, Li G, Cui Q. Importance of van der Waals Interactions in QM/MM Simulations. The Journal of Physical Chemistry. B. 108: 6467-78. PMID 18950136 DOI: 10.1021/Jp037992Q  0.627
2004 Xu D, Wei Y, Wu J, Dunaway-Mariano D, Guo H, Cui Q, Gao J. QM/MM studies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics. Journal of the American Chemical Society. 126: 13649-58. PMID 15493922 DOI: 10.1021/Ja0460211  0.568
2004 Van Wynsberghe A, Li G, Cui Q. Normal-mode analysis suggests protein flexibility modulation throughout RNA polymerase's functional cycle. Biochemistry. 43: 13083-96. PMID 15476402 DOI: 10.1021/Bi049738+  0.71
2004 Cui Q, Li G, Ma J, Karplus M. A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase. Journal of Molecular Biology. 340: 345-72. PMID 15201057 DOI: 10.1016/J.Jmb.2004.04.044  0.527
2004 Xu D, Guo H, Gao J, Cui Q. A QM/MM study of a nucleophilic aromatic substitution reaction catalyzed by 4-chlorobenzoyl-CoA dehalogenase. Chemical Communications (Cambridge, England). 892-3. PMID 15045116 DOI: 10.1039/B401159G  0.529
2004 Li G, Cui Q. Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase. Biophysical Journal. 86: 743-63. PMID 14747312 DOI: 10.1016/S0006-3495(04)74152-1  0.332
2004 Li G, Cui Q. Mechanochemical coupling in myosin: A theoretical analysis with molecular dynamics and combined QM/MM reaction path calculations Journal of Physical Chemistry B. 108: 3342-3357. DOI: 10.1021/Jp0371783  0.397
2003 Li G, Cui Q. What is so special about Arg 55 in the catalysis of cyclophilin A? insights from hybrid QM/MM simulations. Journal of the American Chemical Society. 125: 15028-38. PMID 14653737 DOI: 10.1021/Ja0367851  0.399
2003 Cui Q, Karplus M. Catalysis and specificity in enzymes: a study of triosephosphate isomerase and comparison with methyl glyoxal synthase. Advances in Protein Chemistry. 66: 315-72. PMID 14631822 DOI: 10.1016/S0065-3233(03)66008-0  0.55
2003 Guo H, Cui Q, Lipscomb WN, Karplus M. Understanding the role of active-site residues in chorismate mutase catalysis from molecular-dynamics simulations. Angewandte Chemie (International Ed. in English). 42: 1508-11. PMID 12698486 DOI: 10.1002/Anie.200219878  0.632
2003 Elstner M, Cui Q, Munih P, Kaxiras E, Frauenheim T, Karplus M. Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis. Journal of Computational Chemistry. 24: 565-81. PMID 12632471 DOI: 10.1002/Jcc.10201  0.591
2003 Yang W, Gao YQ, Cui Q, Ma J, Karplus M. The missing link between thermodynamics and structure in F1-ATPase. Proceedings of the National Academy of Sciences of the United States of America. 100: 874-9. PMID 12552084 DOI: 10.1073/Pnas.0337432100  0.587
2003 Li G, Zhang X, Cui Q. Free energy perturbation calculations with combined QM/MM potentials complications, simplifications, and applications to redox potential calculations Journal of Physical Chemistry B. 107: 8643-8653. DOI: 10.1021/Jp034286G  0.363
2003 Cui Q, Karplus M. Is a "proton wire" concerted or stepwise? A model study of proton transfer in carbonic anhydrase Journal of Physical Chemistry B. 107: 1071-1078. DOI: 10.1021/Jp021931V  0.593
2002 Zhang X, Harrison DH, Cui Q. Functional specificities of methylglyoxal synthase and triosephosphate isomerase: a combined QM/MM analysis. Journal of the American Chemical Society. 124: 14871-8. PMID 12475328 DOI: 10.1021/Ja027063X  0.332
2002 Li G, Cui Q. A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase. Biophysical Journal. 83: 2457-74. PMID 12414680 DOI: 10.1016/S0006-3495(02)75257-0  0.329
2002 Ma J, Flynn TC, Cui Q, Leslie AG, Walker JE, Karplus M. A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase. Structure (London, England : 1993). 10: 921-31. PMID 12121647 DOI: 10.1016/S0969-2126(02)00789-X  0.546
2002 Cui Q, Karplus M. Quantum mechanics/molecular mechanics studies of triosephosphate isomerase-catalyzed reactions: effect of geometry and tunneling on proton-transfer rate constants. Journal of the American Chemical Society. 124: 3093-124. PMID 11902900 DOI: 10.1021/Ja0118439  0.6
2002 FORMANECK MS, LI G, ZHANG X, CUI Q. CALCULATING ACCURATE REDOX POTENTIALS IN ENZYMES WITH A COMBINED QM/MM FREE ENERGY PERTURBATION APPROACH Journal of Theoretical and Computational Chemistry. 1: 53-67. DOI: 10.1142/S0219633602000075  0.801
2002 Cui Q, Guo H, Karplus M. Combining ab initio and density functional theories with semiempirical methods Journal of Chemical Physics. 117: 5617-5631. DOI: 10.1063/1.1501134  0.659
2002 Cui Q. Combining implicit solvation models with hybrid quantum mechanical/molecular mechanical methods: A critical test with glycine Journal of Chemical Physics. 117: 4720-4728. DOI: 10.1063/1.1499481  0.358
2002 Cui Q, Karplus M. Promoting modes and demoting modes in enzyme-catalyzed proton transfer reactions: A study of models and realistic systems Journal of Physical Chemistry B. 106: 7927-7947. DOI: 10.1021/Jp0205057  0.567
2002 Cui Q, Elstner M, Karplus M. A theoretical analysis of the proton and hydride transfer in liver alcohol dehydrogenase (LADH) Journal of Physical Chemistry B. 106: 2721-2740. DOI: 10.1021/Jp013012V  0.569
2001 Guo H, Cui Q, Lipscomb WN, Karplus M. Substrate conformational transitions in the active site of chorismate mutase: their role in the catalytic mechanism. Proceedings of the National Academy of Sciences of the United States of America. 98: 9032-7. PMID 11481470 DOI: 10.1073/Pnas.141230998  0.652
2001 Cui Q, Karplus M. Triosephosphate isomerase: a theoretical comparison of alternative pathways. Journal of the American Chemical Society. 123: 2284-90. PMID 11456876 DOI: 10.1021/Ja002886C  0.586
2001 Cui Q, Elstner M, Kaxiras E, Frauenheim T, Karplus M. A QM/MM Implementation of the Self-Consistent Charge Density Functional Tight Binding (SCC-DFTB) Method The Journal of Physical Chemistry B. 105: 569-585. DOI: 10.1021/Jp0029109  0.587
2000 Cui Q, Karplus M. Molecular properties from combined QM/MM methods. I. Analytical second derivative and vibrational calculations The Journal of Chemical Physics. 112: 1133-1149. DOI: 10.1063/1.480658  0.599
2000 Cui Q, Karplus M. Molecular Properties from Combined QM/MM Methods. 2. Chemical Shifts in Large Molecules The Journal of Physical Chemistry B. 104: 3721-3743. DOI: 10.1021/Jp994154G  0.584
1999 Kaledin AL, Cui Q, Heaven MC, Morokuma K. Ab initio theoretical studies on photodissociation of HNCO upon S1(1A″)←S0(1A′) excitation: The role of internal conversion and intersystem crossing The Journal of Chemical Physics. 111: 5004-5016. DOI: 10.1063/1.479758  0.706
1999 Cui Q, Morokuma K, Bowman JM, Klippenstein SJ. The spin-forbidden reaction CH(2Π)+N2→HCN+N(4S) revisited. II. Nonadiabatic transition state theory and application The Journal of Chemical Physics. 110: 9469-9482. DOI: 10.1063/1.478949  0.556
1998 Cui Q, Liu Z, Morokuma K. Theoretical study on the mechanism of CH4+C2H2+ reaction: Mode-enhancement effect The Journal of Chemical Physics. 109: 56-62. DOI: 10.1063/1.476539  0.604
1998 Cui Q, Morokuma K. Ab initio studies on the electronic excited states and photodissociation of O3 anion The Journal of Chemical Physics. 108: 7684-7694. DOI: 10.1063/1.476322  0.548
1998 Cui Q, Musaev DG, Morokuma K. Molecular orbital study of H2 and CH4 activation on small metal clusters. I. Pt, Pd, Pt2, and Pd2 The Journal of Chemical Physics. 108: 8418-8428. DOI: 10.1063/1.476269  0.539
1998 Cui Q, Morokuma K. Ab initio study on the mechanism of C2H2++NH3 reaction: Efficient charge transfer and proton transfer processes competing with stable complex formation The Journal of Chemical Physics. 108: 4021-4030. DOI: 10.1063/1.476230  0.544
1998 Kaledin AL, Heaven MC, Lawrence WG, Cui Q, Stevens JE, Morokuma K. Ab initio molecular-orbital study of the trichlorine radical, Cl3 The Journal of Chemical Physics. 108: 2771-2783. DOI: 10.1063/1.475668  0.707
1998 Stevens JE, Cui Q, Morokuma K. An ab initio investigation of spin-allowed and spin-forbidden pathways of the gas phase reactions of O(3P)+C2H5I The Journal of Chemical Physics. 108: 1544-1551. DOI: 10.1063/1.475525  0.552
1998 Stevens JE, Cui Q, Morokuma K. An ab initio study of the dissociation of HNCO in the S1 electronic state The Journal of Chemical Physics. 108: 1452-1458. DOI: 10.1063/1.475517  0.543
1998 Cui Q, Morokuma K. Ab initio molecular orbital studies on the structure, energies, and photodissociation of the electronic excited states of C2H The Journal of Chemical Physics. 108: 626-636. DOI: 10.1063/1.475424  0.539
1998 Morokuma K, Cui Q, Liu Z. Potential-energy surfaces and their dynamic implications Faraday Discussions. 110: 71-89. DOI: 10.1039/A801186I  0.631
1998 Cui Q, Musaev DG, Morokuma K. Density Functional Study on the Mechanism of Palladium(0)-Catalyzed Thioboration Reaction of Alkynes. Differences between Pd(0) and Pt(0) Catalysts and between Thioboration and Diboration Organometallics. 17: 1383-1392. DOI: 10.1021/Om970834Z  0.534
1998 Cui Q, Musaev DG, Morokuma K. Why Do Pt(PR3)2Complexes Catalyze the Alkyne Diboration Reaction, but Their Palladium Analogues Do Not? A Density Functional Study Organometallics. 17: 742-751. DOI: 10.1021/Om970277G  0.526
1998 Cui Q, Musaev DG, Morokuma K. Molecular Orbital Study of H2and CH4Activation on Small Metal Clusters. 2. Pd3and Pt3 The Journal of Physical Chemistry A. 102: 6373-6384. DOI: 10.1021/Jp982273A  0.504
1997 Cui Q, Morokuma K. Ab initio study of nonadiabatic interactions in the photodissociation of ketene The Journal of Chemical Physics. 107: 4951-4959. DOI: 10.1063/1.474890  0.549
1997 Cui Q, Musaev DG, Morokuma K. Molecular Orbital Study of the Mechanism of Platinum(0)-Catalyzed Alkene and Alkyne Diboration Reactions Organometallics. 16: 1355-1364. DOI: 10.1021/Om960860H  0.54
1996 Liu R, Cui Q, Dunn KM, Morokuma K. Ab initio molecular orbital study of the mechanism of photodissociation of trans‐azomethane The Journal of Chemical Physics. 105: 2333-2345. DOI: 10.1063/1.472101  0.579
1996 Cui Q, Musaev DG, Svensson M, Morokuma K. Analytical Second Derivatives for Effective Core Potential. Application to Transition Structures of Cp2Ru2(μ-H)4and to the Mechanism of Reaction Cu + CH2N2 The Journal of Physical Chemistry. 100: 10936-10944. DOI: 10.1021/Jp960554H  0.535
1995 Cui Q, Musaev DG, Svensson M, Sieber S, Morokuma K. N2 Cleavage by Three-Coordinate Group 6 Complexes. W(III) Complexes Would Be Better Than Mo(III) Complexes Journal of the American Chemical Society. 117: 12366-12367. DOI: 10.1021/Ja00154A052  0.489
Low-probability matches (unlikely to be authored by this person)
2021 Deng J, Cui Q. Reverse Protonation of Buried Ion-Pairs in Staphylococcal Nuclease Mutants. Journal of Chemical Theory and Computation. 17: 4550-4563. PMID 34143626 DOI: 10.1021/acs.jctc.1c00355  0.299
2021 Deng J, Cui Q. Reverse Protonation of Buried Ion-Pairs in Staphylococcal Nuclease Mutants. Journal of Chemical Theory and Computation. 17: 4550-4563. PMID 34143626 DOI: 10.1021/acs.jctc.1c00355  0.299
2019 Das M, Dahal U, Mesele O, Liang D, Cui Q. Molecular Dynamics Simulation of Interaction between Functionalized Nanoparticles with Lipid Membranes: Analysis of Coarse-Grained Models. The Journal of Physical Chemistry. B. PMID 31675790 DOI: 10.1021/Acs.Jpcb.9B08259  0.298
2011 Yang Y, Mkhonto D, Cui Q, Sahai N. Theoretical study of bone sialoprotein in bone biomineralization. Cells, Tissues, Organs. 194: 182-7. PMID 21597272 DOI: 10.1159/000324648  0.297
2017 Diaz Vazquez G, Condon S, Cui Q, Senes A. Molecular Dynamics Simulations of the Predicted E. Coli FtsB-FtsL Tetrameric Complex Biophysical Journal. 112: 501a. DOI: 10.1016/J.Bpj.2016.11.2712  0.296
2018 Bao H, Das D, Courtney NA, Jiang Y, Briguglio JS, Lou X, Roston D, Cui Q, Chanda B, Chapman ER. Dynamics and number of trans-SNARE complexes determine nascent fusion pore properties. Nature. 554: 260-263. PMID 29420480 DOI: 10.1038/Nature25481  0.294
2018 Nomura Y, Roston D, Montemayor EJ, Cui Q, Butcher SE. Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1. Nucleic Acids Research. PMID 30215753 DOI: 10.1093/Nar/Gky812  0.292
2018 Olenick LL, Troiano JM, Vartanian A, Melby ES, Mensch AC, Zhang L, Hong J, Mesele O, Qiu T, Bozich J, Lohse S, Zhang X, Kuech TR, Millevolte A, Gunsolus I, ... ... Cui Q, et al. Lipid Corona Formation from Nanoparticle Interactions with Bilayers Chem. 4: 2709-2723. DOI: 10.1016/J.Chempr.2018.09.018  0.292
2015 Murphy CJ, Vartanian AM, Geiger FM, Hamers RJ, Pedersen J, Cui Q, Haynes CL, Carlson EE, Hernandez R, Klaper RD, Orr G, Rosenzweig Z. Biological Responses to Engineered Nanomaterials: Needs for the Next Decade. Acs Central Science. 1: 117-23. PMID 27162961 DOI: 10.1021/Acscentsci.5B00182  0.292
2008 Hoerter JM, Otte KM, Gellman SH, Cui Q, Stahl SS. Discovery and mechanistic study of Al(III)-catalyzed transamidation of tertiary amides. Journal of the American Chemical Society. 130: 647-54. PMID 18092780 DOI: 10.1021/Ja0762994  0.291
2012 Guerin M, Qian C, Zhong Q, Cui Q, Guo Y, Bei J, Shao J, Zhu X, Huang W, Wu J, Liu R, Liu Q, Wang J, Jia W, Zheng X, et al. Translational oncology toward benefiting cancer patients: the Sun Yat-sen University Cancer Center experience. Science China. Life Sciences. PMID 23132500 DOI: 10.1007/s11427-012-4398-4  0.291
2005 Casey CP, Bikzhanova GA, Cui Q, Guzei IA. Reduction of imines by hydroxycyclopentadienyl ruthenium hydride: intramolecular trapping evidence for hydride and proton transfer outside the coordination sphere of the metal. Journal of the American Chemical Society. 127: 14062-71. PMID 16201828 DOI: 10.1021/Ja053956O  0.29
2016 Lietz CB, Chen Z, Yun Son C, Pang X, Cui Q, Li L. Multiple gas-phase conformations of proline-containing peptides: is it always cis/trans isomerization? The Analyst. PMID 27434776 DOI: 10.1039/C5An00835B  0.285
2012 Su L, Zhu X, Wang Z, Cheng X, Wang Y, Yuan C, Chen Z, Ma C, Li F, Zhou Q, Cui Q. In situ observation of multiple phase transitions in low-melting ionic liquid [BMIM][BF4] under high pressure up to 30 GPa. The Journal of Physical Chemistry. B. 116: 2216-22. PMID 22239600 DOI: 10.1021/jp2108939  0.285
2022 Yuan Y, Deng J, Cui Q. Molecular Dynamics Simulations Establish the Molecular Basis for the Broad Allostery Hotspot Distributions in the Tetracycline Repressor. Journal of the American Chemical Society. 144: 10870-10887. PMID 35675441 DOI: 10.1021/jacs.2c03275  0.285
2019 Bennett JW, Hudson BG, Metz IK, Liang D, Spurgeon S, Cui Q, Mason SE. A systematic determination of hubbard U using the GBRV ultrasoft pseudopotential set Computational Materials Science. 170: 109137. DOI: 10.1016/J.Commatsci.2019.109137  0.282
2018 Li Y, Zhang Y, Großerüschkamp F, Stephan S, Cui Q, Kötting C, Xia F, Gerwert K. Specific Substates of Ras to Interact with GAPs and Effectors: Revealed by Theoretical Simulations and FTIR Experiments. The Journal of Physical Chemistry Letters. PMID 29488771 DOI: 10.1021/Acs.Jpclett.8B00342  0.281
2010 Rao L, Cui Q, Xu X. Electronic properties and desolvation penalties of metal ions plus protein electrostatics dictate the metal binding affinity and selectivity in the copper efflux regulator. Journal of the American Chemical Society. 132: 18092-102. PMID 21128636 DOI: 10.1021/Ja103742K  0.28
2021 Maag D, Mast T, Elstner M, Cui Q, Kubař T. O to bR transition in bacteriorhodopsin occurs through a proton hole mechanism. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34561302 DOI: 10.1073/pnas.2024803118  0.28
2023 Vuong VQ, Cui Q. Reparameterization of the chemical-potential equalization model with DFTB3: A practical balance between accuracy and transferability. The Journal of Chemical Physics. 158: 064111. PMID 36792512 DOI: 10.1063/5.0132903  0.274
2018 Bhimsaria D, Rodríguez-Martínez JA, Pan J, Roston D, Korkmaz EN, Cui Q, Ramanathan P, Ansari AZ. Specificity landscapes unmask submaximal binding site preferences of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 30341220 DOI: 10.1073/Pnas.1811431115  0.27
2018 Cui Q. Membrane-mediated interaction drives mitochondrial ATPase assembly and cristae formation. The Journal of General Physiology. PMID 29769226 DOI: 10.1085/Jgp.201812077  0.267
2022 Demapan D, Kussmann J, Ochsenfeld C, Cui Q. Factors That Determine the Variation of Equilibrium and Kinetic Properties of QM/MM Enzyme Simulations: QM Region, Conformation, and Boundary Condition. Journal of Chemical Theory and Computation. 18: 2530-2542. PMID 35226489 DOI: 10.1021/acs.jctc.1c00714  0.266
2013 Zhu X, Cui J, Feng Y, Fa Y, Zhang J, Cui Q. Metabolic adaption of ethanol-tolerant Clostridium thermocellum. Plos One. 8: e70631. PMID 23936233 DOI: 10.1371/journal.pone.0070631  0.263
2024 Deng J, Cui Q. Efficient Sampling of Cavity Hydration in Proteins with Nonequilibrium Grand Canonical Monte Carlo and Polarizable Force Fields. Journal of Chemical Theory and Computation. PMID 38417108 DOI: 10.1021/acs.jctc.4c00013  0.261
2014 Zhang ZB, Hou L, Pan Q, Wang XM, Cui QH, Tian JZ, Ma LY. [Advances in high-throughput transcriptome research of traditional Chinese medicines]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 39: 1553-8. PMID 25095359  0.258
2016 Goldschen-Ohm MP, Klenchin VA, White DS, Cowgill JB, Cui Q, Goldsmith RH, Chanda B. Author response: Structure and dynamics underlying elementary ligand binding events in human pacemaking channels Elife. DOI: 10.7554/Elife.20797.025  0.257
2007 Kissounko DA, Hoerter JM, Guzei IA, Cui Q, Gellman SH, Stahl SS. TiIV-mediated reactions between primary amines and secondary carboxamides: amidine formation versus transamidation. Journal of the American Chemical Society. 129: 1776-83. PMID 17284008 DOI: 10.1021/Ja0650293  0.257
2015 Guo W, Fu J, Chen X, Gao B, Fu Z, Fan H, Cui Q, Zhu X, Zhao Y, Yang T, Fan D, Zhou H. The effects of estrogen on serum level and hepatocyte expression of PCSK9. Metabolism: Clinical and Experimental. 64: 554-60. PMID 25665485 DOI: 10.1016/j.metabol.2015.01.009  0.256
2023 Deng J, Cui Q. Second-Shell Residues Contribute to Catalysis by Predominately Preorganizing the Apo State in PafA. Journal of the American Chemical Society. PMID 37172218 DOI: 10.1021/jacs.3c02423  0.254
2022 Deng J, Cui Q. Electronic Polarization Is Essential for the Stabilization and Dynamics of Buried Ion Pairs in Staphylococcal Nuclease Mutants. Journal of the American Chemical Society. 144: 4594-4610. PMID 35239338 DOI: 10.1021/jacs.2c00312  0.245
2020 Lai R, Cui Q. What Does the Brønsted Slope Measure in the Phosphoryl Transfer Transition State? Acs Catalysis. 10: 13932-13945. PMID 34567831 DOI: 10.1021/acscatal.0c03764  0.245
2020 Hui J, Dong PT, Liang L, Mandal T, Li J, Ulloa ER, Zhan Y, Jusuf S, Zong C, Seleem MN, Liu GY, Cui Q, Cheng JX. Photo-Disassembly of Membrane Microdomains Revives Conventional Antibiotics against MRSA. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 1903117. PMID 32195102 DOI: 10.1002/Advs.201903117  0.234
2022 Vázquez GD, Cui Q, Senes A. Thermodynamic analysis of the GAS transmembrane motif supports energetic model of dimerization. Biophysical Journal. PMID 36371634 DOI: 10.1016/j.bpj.2022.11.018  0.233
2008 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: Study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst (Journal of the American Chemical Society (2005) 127, (3100-3109)) Journal of the American Chemical Society. 130: 1110. DOI: 10.1021/Ja710851Z  0.227
2022 Zeng J, Chen J, Xia F, Cui Q, Deng X, Xu X. Identification of functional substates of KRas during GTP hydrolysis with enhanced sampling simulations. Physical Chemistry Chemical Physics : Pccp. 24: 7653-7665. PMID 35297922 DOI: 10.1039/d2cp00274d  0.227
2020 Ren W, Fan H, Grimm SA, Guo Y, Kim JJ, Yin J, Li L, Petell CJ, Tan XF, Zhang ZM, Coan JP, Gao L, Cai L, Detrick B, Çetin B, ... Cui Q, et al. Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32675241 DOI: 10.1073/Pnas.2009316117  0.225
2018 Luo GZ, Hao Z, Luo L, Shen M, Sparvoli D, Zheng Y, Zhang Z, Weng X, Chen K, Cui Q, Turkewitz AP, He C. N-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA. Genome Biology. 19: 200. PMID 30454035 DOI: 10.1186/S13059-018-1573-3  0.224
2022 Liang D, Liu J, Heinz H, Mason SE, Hamers RJ, Cui Q. Binding of polar and hydrophobic molecules at the LiCoO (001)-water interface: force field development and molecular dynamics simulations. Nanoscale. PMID 35470836 DOI: 10.1039/d2nr00672c  0.219
2019 Lu X, Duchimaza-Heredia J, Cui Q. Analysis of Density Functional Tight Binding (DFTB) with Natural Bonding Orbitals (NBOs). The Journal of Physical Chemistry. A. PMID 31373822 DOI: 10.1021/acs.jpca.9b05072  0.215
2013 Fu Y, Jia G, Pang X, Wang RN, Wang X, Li CJ, Smemo S, Dai Q, Bailey KA, Nobrega MA, Han KL, Cui Q, He C. FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA. Nature Communications. 4: 1798. PMID 23653210 DOI: 10.1038/Ncomms2822  0.211
2023 Yuan Y, Cui Q. Accurate and Efficient Multilevel Free Energy Simulations with Neural Network-Assisted Enhanced Sampling. Journal of Chemical Theory and Computation. 19: 5394-5406. PMID 37527495 DOI: 10.1021/acs.jctc.3c00591  0.211
2011 Yang M, Wang FD, Han B, Wang SJ, Zhou DB, Pan H, Zhao YQ, Cui QC, Ma L, Chng WJ, Shen T. Castleman's disease presenting as prolonged anemia and growth retardation: a case report and literature review. Acta Haematologica. 125: 125-9. PMID 21150179 DOI: 10.1159/000322119  0.206
2020 Hui J, Dong P, Liang L, Mandal T, Li J, Ulloa ER, Zhan Y, Jusuf S, Zong C, Seleem MN, Liu GY, Cui Q, Cheng J. Antibiotic Resistance: Photo‐Disassembly of Membrane Microdomains Revives Conventional Antibiotics against MRSA (Adv. Sci. 6/2020) Advanced Science. 7: 2070035. DOI: 10.1002/Advs.202070035  0.204
2023 Paul S, Audhya A, Cui Q. Molecular mechanism of GTP binding- and dimerization-induced enhancement of Sar1-mediated membrane remodeling. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212513120. PMID 36780528 DOI: 10.1073/pnas.2212513120  0.202
2015 Wei ZZ, Vatcher G, Tin AH, Teng JL, Wang J, Cui QH, Chen JG, Yu AC. Positively-charged semi-tunnel is a structural and surface characteristic of polyphosphate-binding proteins: an in-silico study. Plos One. 10: e0123713. PMID 25879219 DOI: 10.1371/journal.pone.0123713  0.201
2022 Mondal S, Cui Q. Coacervation of poly-electrolytes in the presence of lipid bilayers: mutual alteration of structure and morphology. Chemical Science. 13: 7933-7946. PMID 35865903 DOI: 10.1039/d2sc02013k  0.197
2021 Manda T, Spagnolie SE, Audhya A, Cui Q. Protein Induced Membrane Curvature in Coarse-Grained Simulations: Binding Interface, Insertion Depth and Lipid Spontaneous Curvature. Biophysical Journal. PMID 34197798 DOI: 10.1016/j.bpj.2021.05.029  0.196
2021 Voegtle MJ, Pal T, Pennathur AK, Menachekanian S, Patrow JG, Sarkar S, Cui Q, Dawlaty JM. Interfacial Polarization and Ionic Structure at the Ionic Liquid-Metal Interface Studied by Vibrational Spectroscopy and Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 33689335 DOI: 10.1021/acs.jpcb.0c11232  0.191
2014 Mori T, Hamers RJ, Pedersen JA, Cui Q. Correction to An Explicit Consideration of Desolvation is Critical to Binding Free Energy Calculations of Charged Molecules at Ionic Surfaces. Journal of Chemical Theory and Computation. 10: 5738. PMID 26583255 DOI: 10.1021/ct500942q  0.19
2014 Mori T, Hamers RJ, Pedersen JA, Cui Q. Correction to an explicit consideration of desolvation is critical to binding free energy calculations of charged molecules at ionic surfaces Journal of Chemical Theory and Computation. 10: 5738. DOI: 10.1021/ct500942q  0.19
2022 Leander M, Liu Z, Cui Q, Raman S. Deep mutational scanning and machine learning reveal structural and molecular rules governing allosteric hotspots in homologous proteins. Elife. 11. PMID 36226916 DOI: 10.7554/eLife.79932  0.19
2013 Mori T, Hamers RJ, Pedersen JA, Cui Q. An explicit consideration of desolvation is critical to binding free energy calculations of charged molecules at ionic surfaces Journal of Chemical Theory and Computation. 9: 5059-5069. DOI: 10.1021/ct400487e  0.189
2022 Lai R, Cui Q. How to Stabilize Carbenes in Enzyme Active Sites without Metal Ions. Journal of the American Chemical Society. 144: 20739-20751. PMID 36326587 DOI: 10.1021/jacs.2c08515  0.187
2024 Mondal S, Cui Q. Sequence Sensitivity in Membrane Remodeling by Polyampholyte Condensates. The Journal of Physical Chemistry. B. 128: 2087-2099. PMID 38407041 DOI: 10.1021/acs.jpcb.3c08149  0.186
2021 Cui Q, Pal T, Xie L. Biomolecular QM/MM Simulations: What Are Some of the "Burning Issues"? The Journal of Physical Chemistry. B. PMID 33401903 DOI: 10.1021/acs.jpcb.0c09898  0.186
2022 Dong Y, Fu L, Song J, Zhang S, Li X, Fang W, Cui Q, Gao L. Thermodynamic Driving Forces for Divalent Cations Binding to Zwitterionic Phospholipid Membranes. The Journal of Physical Chemistry Letters. 11237-11244. PMID 36448843 DOI: 10.1021/acs.jpclett.2c03019  0.185
2021 Zhang Y, Dahal U, Feng ZV, Rosenzweig Z, Cui Q, Hamers RJ. Influence of Surface Ligand Molecular Structure on Phospholipid Membrane Disruption by Cationic Nanoparticles. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34115507 DOI: 10.1021/acs.langmuir.1c01146  0.184
2019 Li R, Wang X, Liu J, Cui Q, Wang X, Chen S, Lianzhou J. Relationship between Molecular Flexibility and Emulsifying Properties of Soy Protein Isolate-Glucose Conjugates. Journal of Agricultural and Food Chemistry. PMID 30883123 DOI: 10.1021/acs.jafc.8b06713  0.182
2021 Zeng J, Weng J, Zhang Y, Xia F, Cui Q, Xu X. Conformational Features of Ras: Key Hydrogen-Bonding Interactions of Gln61 in the Intermediate State during GTP Hydrolysis. The Journal of Physical Chemistry. B. PMID 34324329 DOI: 10.1021/acs.jpcb.1c04679  0.181
2020 Foreman-Ortiz IU, Liang D, Laudadio ED, Calderin JD, Wu M, Keshri P, Zhang X, Schwartz MP, Hamers RJ, Rotello VM, Murphy CJ, Cui Q, Pedersen JA. Anionic nanoparticle-induced perturbation to phospholipid membranes affects ion channel function. Proceedings of the National Academy of Sciences of the United States of America. PMID 33106430 DOI: 10.1073/pnas.2004736117  0.179
2021 Gregory MT, Gao Y, Cui Q, Yang W. Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34088846 DOI: 10.1073/pnas.2103990118  0.179
2024 Lai R, Li G, Cui Q. Flexibility of Binding Site is Essential to the Ca Selectivity in EF-Hand Calcium-Binding Proteins. Journal of the American Chemical Society. PMID 38456823 DOI: 10.1021/jacs.3c13981  0.177
2020 Lai R, Cui Q. Differences in the Nature of the Phosphoryl Transfer Transition State in Protein Phosphatase 1 and Alkaline Phosphatase: Insights from QM Cluster Models. The Journal of Physical Chemistry. B. PMID 33030898 DOI: 10.1021/acs.jpcb.0c07863  0.176
2022 Lewis DK, Oh Y, Mohanam LN, Wierzbicki M, Ing NL, Gu L, Hochbaum A, Wu R, Cui Q, Sharifzadeh S. Electronic Structure of de Novo Peptide ACC-Hex from First Principles. The Journal of Physical Chemistry. B. PMID 35671500 DOI: 10.1021/acs.jpcb.2c02346  0.172
2020 Leander M, Yuan Y, Meger A, Cui Q, Raman S. Functional plasticity and evolutionary adaptation of allosteric regulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32999067 DOI: 10.1073/pnas.2002613117  0.172
2021 Tran N, Oh Y, Sutherland M, Cui Q, Hong M. Cholesterol-Mediated Clustering of the HIV Fusion Protein gp41 in Lipid Bilayers. Journal of Molecular Biology. 167345. PMID 34762895 DOI: 10.1016/j.jmb.2021.167345  0.172
2021 Craven SJ, Condon SGF, Diaz-Vazquez G, Cui Q, Senes A. The coiled-coil domain of E. coli FtsLB is a structurally detuned element critical for modulating its activation in bacterial cell division. The Journal of Biological Chemistry. 101460. PMID 34871549 DOI: 10.1016/j.jbc.2021.101460  0.172
2022 Cui Q, McCully ME. Editorial overview: Theory and simulation: Molecular modeling from atoms to complexes. Current Opinion in Structural Biology. 102347. PMID 35241343 DOI: 10.1016/j.sbi.2022.102347  0.171
2020 Feng Z, Wang H, Wang F, Oh Y, Berciu C, Cui Q, Egelman EH, Xu B. Artificial Intracellular Filaments. Cell Reports. Physical Science. 1. PMID 32776017 DOI: 10.1016/j.xcrp.2020.100085  0.169
2021 Cheng R, Lai R, Peng C, Lopez J, Li Z, Naowarojna N, Li K, Wong C, Lee N, Whelan SA, Qiao L, Grinstaff MW, Wang J, Cui Q, Liu P. Implications for an imidazol-2-yl carbene intermediate in the rhodanase-catalyzed C-S bond formation reaction of anaerobic ergothioneine biosynthesis. Acs Catalysis. 11: 3319-3334. PMID 34745712 DOI: 10.1021/acscatal.0c04886  0.166
2020 Stepanovic S, Lai R, Elstner M, Gruden M, Garcia-Fernandez P, Cui Q. Improvement of d-d interactions in density functional tight binding for transition metal ions with a ligand field model: assessment of a DFTB3+ model on nickel coordination compounds. Physical Chemistry Chemical Physics : Pccp. PMID 33220674 DOI: 10.1039/d0cp04694a  0.164
2021 Chen H, Deng J, Cui Q, Chanda B, Henzler-Wildman K. Mapping temperature-dependent conformational change in the voltage-sensing domain of an engineered heat-activated K channel. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33782120 DOI: 10.1073/pnas.2017280118  0.163
2023 Deng J, Yuan Y, Cui Q. Modulation of Allostery with Multiple Mechanisms by Hotspot Mutations in TetR. Biorxiv : the Preprint Server For Biology. PMID 37905112 DOI: 10.1101/2023.08.29.555381  0.162
2020 Cheng R, Wu L, Lai R, Peng C, Naowarojna N, Hu W, Li X, Whelan SA, Lee N, Lopez J, Zhao C, Yong Y, Xue J, Jiang X, Grinstaff MW, ... ... Cui Q, et al. Single-step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in Anaerobic Ergothioneine Biosynthesis. Acs Catalysis. 10: 8981-8994. PMID 34306804 DOI: 10.1021/acscatal.0c01809  0.161
2023 Mondal S, Cui Q. Coacervation-Induced Remodeling of Nanovesicles. The Journal of Physical Chemistry Letters. 14: 4532-4540. PMID 37159305 DOI: 10.1021/acs.jpclett.3c00705  0.16
2024 Deng J, Yuan Y, Cui Q. Modulation of Allostery with Multiple Mechanisms by Hotspot Mutations in TetR. Journal of the American Chemical Society. PMID 38231868 DOI: 10.1021/jacs.3c12494  0.16
2015 Xi HW, Duan WQ, Cui QQ, You ZH, Zhao Z, Zhang P. Transumbilical Single-Site Laparoscopic Inguinal Hernia Inversion and Ligation in Girls. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. 25: 522-5. PMID 25941750 DOI: 10.1089/lap.2014.0383  0.152
2022 Courtney KC, Wu L, Mandal T, Swift M, Zhang Z, Alaghemandi M, Wu Z, Bradberry MM, Deo C, Lavis LD, Volkmann N, Hanein D, Cui Q, Bao H, Chapman ER. The complexin C-terminal amphipathic helix stabilizes the fusion pore open state by sculpting membranes. Nature Structural & Molecular Biology. 29: 97-107. PMID 35132256 DOI: 10.1038/s41594-021-00716-0  0.151
2003 Smedarchina Z, Siebrand W, Fernández-Ramos A, Cui Q. Kinetic isotope effects for concerted multiple proton transfer: a direct dynamics study of an active-site model of carbonic anhydrase II. Journal of the American Chemical Society. 125: 243-51. PMID 12515527 DOI: 10.1021/ja0210594  0.151
2016 Zeng P, Cui Q. Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs. Scientific Reports. 6: 19016. PMID 26751501 DOI: 10.1038/srep19016  0.149
2014 Chen C, Cui Z, Xiao Y, Cui Q, Smith SP, Lamed R, Bayer EA, Feng Y. Revisiting the NMR solution structure of the Cel48S type-I dockerin module from Clostridium thermocellum reveals a cohesin-primed conformation. Journal of Structural Biology. 188: 188-93. PMID 25270376 DOI: 10.1016/J.Jsb.2014.09.006  0.149
2023 Oh Y, Cui Q. Non-equilibrium transport of nanoparticles across the lipid membrane. Nanoscale. PMID 37431896 DOI: 10.1039/d3nr00930k  0.146
2023 Liu Z, Gillis T, Raman S, Cui Q. A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery. Biorxiv : the Preprint Server For Biology. PMID 37662419 DOI: 10.1101/2023.08.06.552196  0.146
2022 Xiong Y, Zeng J, Xia F, Cui Q, Deng X, Xu X. Conformations and binding pockets of HRas and its guanine nucleotide exchange factors complexes in the guanosine triphosphate exchange process. Journal of Computational Chemistry. PMID 35324017 DOI: 10.1002/jcc.26846  0.143
2016 Liu YJ, Song X, Li Y, Xuan J, Cui Q, Wang J, Feng Y. Low stability of the reduced state of Mycobacterium tuberculosis NrdH redoxin. Febs Letters. PMID 26786191 DOI: 10.1002/1873-3468.12068  0.142
2021 Cui AY, Cui Q. Modulation of Nanoparticle Diffusion by Surface Ligand Length and Charge: Analysis with Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 33881853 DOI: 10.1021/acs.jpcb.1c01189  0.142
2023 Courtney KC, Mandal T, Mehta N, Wu L, Li Y, Das D, Cui Q, Chapman ER. Synaptotagmin-7 outperforms synaptotagmin-1 to promote the formation of large, stable fusion pores via robust membrane penetration. Nature Communications. 14: 7761. PMID 38012142 DOI: 10.1038/s41467-023-42497-8  0.142
2015 Chen C, Cui Z, Song X, Liu YJ, Cui Q, Feng Y. Integration of bacterial expansin-like proteins into cellulosome promotes the cellulose degradation. Applied Microbiology and Biotechnology. PMID 26521249 DOI: 10.1007/s00253-015-7071-6  0.141
2021 Cui Q, Sun Y, Cheng J, Guo M. Effect of two-step enzymatic hydrolysis on the antioxidant properties and proteomics of hydrolysates of milk protein concentrate. Food Chemistry. 366: 130711. PMID 34343947 DOI: 10.1016/j.foodchem.2021.130711  0.136
2021 Cui Q, Sun Y, Zhou Z, Cheng J, Guo M. Effects of Enzymatic Hydrolysis on Physicochemical Properties and Solubility and Bitterness of Milk Protein Hydrolysates. Foods (Basel, Switzerland). 10. PMID 34681510 DOI: 10.3390/foods10102462  0.133
2023 Wu CG, Balakrishnan VK, Merrill RA, Parihar PS, Konovolov K, Chen YC, Xu Z, Wei H, Sundaresan R, Cui Q, Wadzinski BE, Swingle MR, Musiyenko A, Chung WK, Honkanen RE, et al. B56δ long-disordered arms form a dynamic PP2A regulation interface coupled with global allostery and Jordan's syndrome mutations. Proceedings of the National Academy of Sciences of the United States of America. 121: e2310727120. PMID 38150499 DOI: 10.1073/pnas.2310727120  0.13
2015 Jiang J, Wu X, Li D, Ma B, Liu R, Wang X, Zhang J, Zhu H, Cui Q. High pressure Raman scattering and synchrotron X-ray diffraction studies of benzyl azide. The Journal of Physical Chemistry. B. 119: 513-8. PMID 25523511 DOI: 10.1021/jp510178s  0.129
2015 Cui Q, Yashchenok A, Li L, Möhwald H, Bargheer M. Mechanistic study on reduction reaction of nitro compounds catalyzed by gold nanoparticles using in situ SERS monitoring Colloids and Surfaces a: Physicochemical and Engineering Aspects. 470: 108-113. DOI: 10.1016/J.Colsurfa.2015.01.075  0.124
2015 Cui Q, He J, Bellus MZ, Mirzokarimov M, Hofmann T, Chiu HY, Antonik M, He D, Wang Y, Zhao H. Transient Absorption Measurements on Anisotropic Monolayer ReS2. Small (Weinheim An Der Bergstrasse, Germany). PMID 26317682 DOI: 10.1002/smll.201501668  0.123
2015 Yao X, Xiao Y, Cui Q, Feng Y. (1)H, (15)N and (13)C resonance assignments of translationally-controlled tumor protein from photosynthetic microalga Nannochloropsis oceanica. Biomolecular Nmr Assignments. PMID 25680850 DOI: 10.1007/s12104-015-9602-6  0.122
2020 Zhi B, Yao X, Wu M, Mensch A, Cui Y, Deng J, Duchimaza-Heredia JJ, Trerayapiwat KJ, Niehaus T, Nishimoto Y, Frank BP, Zhang Y, Lewis RE, Kappel EA, Hamers RJ, ... ... Cui Q, et al. Multicolor polymeric carbon dots: synthesis, separation and polyamide-supported molecular fluorescence. Chemical Science. 12: 2441-2455. PMID 34164010 DOI: 10.1039/d0sc05743f  0.122
2022 Cui Q, Duan Y, Zhang M, Liang S, Sun Y, Cheng J, Guo M. Peptide profiles and antioxidant capacity of extensive hydrolysates of milk protein concentrate. Journal of Dairy Science. PMID 36028349 DOI: 10.3168/jds.2021-21496  0.121
2024 Donadoni E, Siani P, Frigerio G, Milani C, Cui Q, Di Valentin C. The effect of polymer coating on nanoparticles' interaction with lipid membranes studied by coarse-grained molecular dynamics simulations. Nanoscale. PMID 38646798 DOI: 10.1039/d4nr00495g  0.12
2023 Zhang Q, Li L, Chen L, Liu S, Cui Q, Qin W. Effects of Sequential Enzymolysis and Glycosylation on the Structural Properties and Antioxidant Activity of Soybean Protein Isolate. Antioxidants (Basel, Switzerland). 12. PMID 36829989 DOI: 10.3390/antiox12020430  0.119
2015 Gong M, Shastry TA, Cui Q, Kohlmeyer RR, Luck KA, Rowberg A, Marks TJ, Durstock MF, Zhao H, Hersam MC, Ren S. Understanding charge transfer in carbon nanotube-fullerene bulk heterojunctions. Acs Applied Materials & Interfaces. 7: 7428-35. PMID 25797180 DOI: 10.1021/Acsami.5B01536  0.119
2015 Guo G, Fang T, Wang C, Huang Y, Tian F, Cui Q, Wang H. Isolation and characterization of two novel halotolerant Catechol 2, 3-dioxygenases from a halophilic bacterial consortium. Scientific Reports. 5: 17603. PMID 26621792 DOI: 10.1038/srep17603  0.119
2015 Zeng P, Li J, Ma W, Cui Q. Rsite: a computational method to identify the functional sites of noncoding RNAs. Scientific Reports. 5: 9179. PMID 25776805 DOI: 10.1038/srep09179  0.118
2015 Wang Q, Yan T, Wang K, Zhu H, Cui Q, Zou B. Pressure-induced reversible phase transition in thiourea dioxide crystal. The Journal of Chemical Physics. 142: 244701. PMID 26133443 DOI: 10.1063/1.4922842  0.118
2014 Ménard R, Schoenhofen IC, Tao L, Aubry A, Bouchard P, Reid CW, Lachance P, Twine SM, Fulton KM, Cui Q, Hogues H, Purisima EO, Sulea T, Logan SM. Small-molecule inhibitors of the pseudaminic acid biosynthetic pathway: targeting motility as a key bacterial virulence factor. Antimicrobial Agents and Chemotherapy. 58: 7430-40. PMID 25267679 DOI: 10.1128/AAC.03858-14  0.117
2023 Cui Q, Zhang Z, Li M, Zhou M, Sun X. Peptide profiles and allergy-reactivity of extensive hydrolysates of milk protein. Food Chemistry. 411: 135544. PMID 36701919 DOI: 10.1016/j.foodchem.2023.135544  0.117
2019 Cui Q, Wang X, Wang G, Li R, Wang X, Chen S, Liu J, Jiang L. Effects of ultrasonic treatment on the gel properties of microbial transglutaminase crosslinked soy, whey and soy-whey proteins. Food Science and Biotechnology. 28: 1455-1464. PMID 31695944 DOI: 10.1007/s10068-019-00583-y  0.116
2015 Deng Q, Jiang X, Zhang L, Cui Q. Making optimal investment decisions for energy service companies under uncertainty: A case study Energy. DOI: 10.1016/J.Energy.2015.05.004  0.116
2015 Deng Q, Jiang X, Cui Q, Zhang L. Strategic design of cost savings guarantee in energy performance contracting under uncertainty Applied Energy. 139: 68-80. DOI: 10.1016/J.Apenergy.2014.11.027  0.115
2015 He J, He D, Wang Y, Cui Q, Bellus MZ, Chiu HY, Zhao H. Exceptional and Anisotropic Transport Properties of Photocarriers in Black Phosphorus. Acs Nano. 9: 6436-42. PMID 25961945 DOI: 10.1021/acsnano.5b02104  0.114
2015 Yang GG, Xu XY, Ding Y, Cui QQ, Wang Z, Zhang QY, Shi SH, Lv ZY, Wang XY, Zhang JH, Zhang RG, Xu CS. Linker length affects expression and bioactivity of the onconase fusion protein in Pichia pastoris. Genetics and Molecular Research : Gmr. 14: 19360-70. PMID 26782589 DOI: 10.4238/2015.December.29.46  0.114
2021 Zhang A, Cui Q, Wang X, Zhao XH. Effect of temperature of preheated soy protein isolate on the structure and properties of soy protein isolate heated-vitamin D complex. Journal of Food Biochemistry. e13733. PMID 33890679 DOI: 10.1111/jfbc.13733  0.113
2023 Wu CG, Balakrishnan VK, Parihar PS, Konovolov K, Chen YC, Merrill RA, Wei H, Carragher B, Sundaresan R, Cui Q, Wadzinski BE, Swingle MR, Musiyenko A, Honkanen R, Chung WK, et al. Extended regulation interface coupled to the allosteric network and disease mutations in the PP2A-B56δ holoenzyme. Biorxiv : the Preprint Server For Biology. PMID 37066309 DOI: 10.1101/2023.03.09.530109  0.111
2016 Li Y, Wang YZ, Cui Q. Energy efficiency measures for airlines: An application of virtual frontier dynamic range adjusted measure Journal of Renewable and Sustainable Energy. 8. DOI: 10.1063/1.4938221  0.11
2015 Ding X, Chen C, Cui Q, Li W, Feng Y. Resonance assignments of the periplasmic domain of a cellulose-sensing trans-membrane anti-sigma factor from Clostridium thermocellum. Biomolecular Nmr Assignments. PMID 25682099 DOI: 10.1007/s12104-015-9601-7  0.107
2021 Li Y, Huang XC, Cui Q. Exploring the effect of COVID-19 on airline environmental efficiency through an interval epsilon-based measure model. Environmental Science and Pollution Research International. PMID 34846663 DOI: 10.1007/s11356-021-17610-3  0.107
2015 Cui Q, Zhao H. Coherent Control of Nanoscale Ballistic Currents in Transition Metal Dichalcogenide ReS2. Acs Nano. 9: 3935-41. PMID 25765718 DOI: 10.1021/acsnano.5b01111  0.105
2015 Xu C, Huang R, Teng L, Jing X, Hu J, Cui G, Wang Y, Cui Q, Xu J. Cellulosome stoichiometry in Clostridium cellulolyticum is regulated by selective RNA processing and stabilization. Nature Communications. 6: 6900. PMID 25908225 DOI: 10.1038/ncomms7900  0.104
2015 He K, Pang L, Wang X, Di D, Zhang Q, Lu J, Cui Q. A novel method of calculating the energy deposition curve of nanosecond pulsed surface dielectric barrier discharge Plasma Sources Science and Technology. 24. DOI: 10.1088/0963-0252/24/2/025034  0.103
2015 Zhang K, Li T, Fu Y, Cui Q, Kong W. Predicting Abdominal Aortic Aneurysm Target Genes by Level-2 Protein-Protein Interaction. Plos One. 10: e0140888. PMID 26496478 DOI: 10.1371/journal.pone.0140888  0.101
2020 Han Y, Cheng J, Cui Q, Dong Q, Song W. Uplift Bearing Capacity of Cone-Cylinder Foundation for Transmission Line in Frozen Soil Regions, Using Reduced-Scale Model Tests and Numerical Simulations Energies. 13: 2066. DOI: 10.3390/en13082066  0.101
2021 Fang J, Leichter SM, Jiang J, Biswal M, Lu J, Zhang ZM, Ren W, Zhai J, Cui Q, Zhong X, Song J. Substrate deformation regulates DRM2-mediated DNA methylation in plants. Science Advances. 7. PMID 34078593 DOI: 10.1126/sciadv.abd9224  0.101
2018 Sun Y, Cui Q, Huang Y, Yuan Y. A High-Precision Rotor Position and Displacement Prediction Method Specially for Bearingless Permanent Magnet Synchronous Motor Mathematical Problems in Engineering. 2018: 1-12. DOI: 10.1155/2018/9602426  0.1
2021 Zhang A, Cui Q, Yu Z, Wang X, Zhao XH. Effects of transglutaminase glycosylated soy protein isolate on its structure and interfacial properties. Journal of the Science of Food and Agriculture. PMID 33576008 DOI: 10.1002/jsfa.11155  0.098
2016 Cui Q, Li Q, Zhou X, Zhang L. Seismic performance of multi-story self-centering structures with angles used as energy-dissipaters Sustainable Buildings and Structures - Proceedings of the 1st International Conference On Sustainable Buildings and Structures, Icsbs 2015. 73-79.  0.098
2015 Pang Y, Cui Q, Duan X, Chen H, Zeng L, Zhang Z, Lu G, Chen H. Extraversion modulates functional connectivity hubs of resting-state brain networks. Journal of Neuropsychology. PMID 26566723 DOI: 10.1111/jnp.12090  0.097
2022 Li Y, Yang B, Zhou S, Cui Q. Identification lodging degree of wheat using point cloud data and convolutional neural network. Frontiers in Plant Science. 13: 968479. PMID 36237498 DOI: 10.3389/fpls.2022.968479  0.097
2015 Shu Y, Rajathurai K, Gao F, Cui Q, Gu Z. Synthesis and thermal properties of low melting temperature tin/indium (Sn/In) lead-free nanosolders and their melting behavior in a vapor flux Journal of Alloys and Compounds. 626: 391-400. DOI: 10.1016/J.Jallcom.2014.11.173  0.097
2016 Wang HH, Cui Q, Zhang T, Wang ZB, Ouyang YC, Shen W, Ma JY, Schatten H, Sun QY. Rab3A, Rab27A, and Rab35 regulate different events during mouse oocyte meiotic maturation and activation. Histochemistry and Cell Biology. PMID 26791531 DOI: 10.1007/s00418-015-1404-5  0.096
2015 Fikadu MK, Sofotasios PC, Valkama M, Cui Q, Karagiannidis GK. Energy-efficiency analysis of regenerative cooperative systems under spatial correlation Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 217-222. DOI: 10.1109/PIMRC.2015.7343298  0.096
2019 Wang X, Chen S, Cui Q, Li R, Wang X, Jiang L. Effect of pH on Freeze-thaw Stability of Glycated Soy Protein Isolate. Journal of Oleo Science. PMID 30760674 DOI: 10.5650/jos.ess18227  0.095
2015 Cui Q, Shi J, Du J, Zhao T, Xiong C. An approach for monitoring global vegetation based on multiangular observations from SMOS Ieee Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 8: 604-616. DOI: 10.1109/Jstars.2015.2388698  0.095
2022 Yao X, Wang Y, Li F, Dalluge JJ, Orr G, Hernandez R, Cui Q, Haynes CL. Unconventional aliphatic fluorophores discovered as the luminescence origin in citric acid-urea carbon dots. Nanoscale. PMID 35758638 DOI: 10.1039/d2nr02361j  0.095
2022 Sun X, Cui Q, Li R, Hao L, Liu H, Wang X, Xu N, Zhao XH. Structural and emulsifying properties of soybean protein isolate glycated with glucose based on pH treatment. Journal of the Science of Food and Agriculture. PMID 35092622 DOI: 10.1002/jsfa.11800  0.094
2015 Zhong L, Cui Q. On a relation between the atom-bond connectivity and the first geometric-arithmetic indices Discrete Applied Mathematics. 185: 249-253. DOI: 10.1016/j.dam.2014.11.027  0.093
2016 Li X, Guo Y, Cui Q, Fu L, Zhang J, Qiu S. Moisture diffusion and transfer dynamic analysis of eggplant during vacuum freeze-drying based on image processing technique Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering. 32: 304-311. DOI: 10.11975/j.issn.1002-6819.2016.01.042  0.092
2023 Mehta N, Mondal S, Watson ET, Cui Q, Chapman ER. The juxtamembrane linker of synaptotagmin 1 regulates Ca binding via liquid-liquid phase separation. Biorxiv : the Preprint Server For Biology. PMID 37609296 DOI: 10.1101/2023.08.11.551903  0.091
2015 Chen F, Bo J, Ma X, Dong L, Shan Z, Cui Q, Chen H, Wang K. A New Membrane Lipid Raft Gene SpFLT-1 Facilitating the Endocytosis of Vibrio alginolyticus in the Crab Scylla paramamosain. Plos One. 10: e0133443. PMID 26186350 DOI: 10.1371/journal.pone.0133443  0.091
2015 Meng X, Yu Q, Gao Y, Zhang Q, Li C, Cui Q. Enhanced propene/ethene selectivity for methanol conversion over pure silica zeolite: Role of hydrogen-bonded silanol groups Catalysis Communications. 61: 67-71. DOI: 10.1016/j.catcom.2014.12.011  0.09
2015 Zheng Q, Zhao K, Han X, Huff AF, Cui Q, Babcock SA, Yu S, Zhang Y. Inhibition of AMPK accentuates prolonged caloric restriction-induced change in cardiac contractile function through disruption of compensatory autophagy. Biochimica Et Biophysica Acta. 1852: 332-42. PMID 24793415 DOI: 10.1016/j.bbadis.2014.04.023  0.09
2014 Liu X, Zhou J, Yu T, Chen C, Cheng Q, Sengupta K, Huang Y, Li H, Liu C, Wang Y, Posocco P, Wang M, Cui Q, Giorgio S, Fermeglia M, et al. Adaptive amphiphilic dendrimer-based nanoassemblies as robust and versatile siRNA delivery systems. Angewandte Chemie (International Ed. in English). 53: 11822-7. PMID 25219970 DOI: 10.1002/Anie.201406764  0.089
2015 Yang X, Chordia MD, Du X, Graves JL, Zhang Y, Park YS, Guo Y, Pan D, Cui Q. Targeting formyl peptide receptor 1 of activated macrophages to monitor inflammation of experimental osteoarthritis in rat. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 26717557 DOI: 10.1002/jor.23148  0.088
2015 Liu YJ, Zhang J, Cui GZ, Cui Q. Current progress of targetron technology: Development, improvement and application in metabolic engineering. Biotechnology Journal. 10: 855-65. PMID 25735546 DOI: 10.1002/biot.201400716  0.088
2015 Liu Z, Sun Y, Tan S, Liu L, Hu S, Huo H, Li M, Cui Q, Yu M. Nutrient deprivation-related OXPHOS/glycolysis interconversion via HIF-1α/C-MYC pathway in U251 cells. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26646563 DOI: 10.1007/s13277-015-4479-7  0.087
2024 Mehta N, Mondal S, Watson ET, Cui Q, Chapman ER. The juxtamembrane linker of synaptotagmin 1 regulates Ca binding via liquid-liquid phase separation. Nature Communications. 15: 262. PMID 38177243 DOI: 10.1038/s41467-023-44414-5  0.086
2015 Wang S, Lv B, Cui Q, Ma X, Ba X, Xiao J. Synthesis, Photophysics, and Self-Assembly of Furan-Embedded Heteroarenes. Chemistry (Weinheim An Der Bergstrasse, Germany). 21: 14791-6. PMID 26431444 DOI: 10.1002/chem.201501978  0.086
2015 Zhang J, Zhu H, Wu X, Cui H, Li D, Jiang J, Gao C, Wang Q, Cui Q. Plasma-assisted synthesis and pressure-induced structural transition of single-crystalline SnSe nanosheets. Nanoscale. 7: 10807-16. PMID 26269801  0.086
2015 He J, He D, Wang Y, Cui Q, Ceballos F, Zhao H. Spatiotemporal dynamics of excitons in monolayer and bulk WS2. Nanoscale. 7: 9526-31. PMID 25947347 DOI: 10.1039/c5nr00188a  0.085
2016 Yang B, Xu J, Zhang Y, Zeng H, Tian T, Chu Y, Pan Y, Cui Q. Improvement and luminescent mechanism of Bi4Si3O12 scintillation crystals by Dy3+ doping Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 807: 1-4. DOI: 10.1016/J.Nima.2015.10.033  0.084
2015 Cui Q, Li Y. Evaluating energy efficiency for airlines: An application of VFB-DEA Journal of Air Transport Management. 44: 34-41. DOI: 10.1016/j.jairtraman.2015.02.008  0.083
2022 Li Y, Huang XC, Cui Q. Exploring the environmental efficiency of airlines through a parallel RAM approach. Energy Efficiency. 15: 45. PMID 36000077 DOI: 10.1007/s12053-022-10054-9  0.083
2015 Li YH, Zhang G, Cui Q. PPUS: a web server to predict PUS-specific pseudouridine sites. Bioinformatics (Oxford, England). PMID 26076723 DOI: 10.1093/bioinformatics/btv366  0.083
2016 Hsu SC, Weng KW, Cui Q, Rand W. Understanding the complexity of project team member selection through agent-based modeling International Journal of Project Management. 34: 82-93. DOI: 10.1016/J.Ijproman.2015.10.001  0.083
2015 Zhao Y, Wang Y, Cui Q. Calculating intrinsic and extrinsic camera parameters based on the pnp problem Journal of Engineering and Technological Sciences. 46: 258-270. DOI: 10.5614/j.eng.technol.sci.2014.46.3.2  0.082
2014 Ghandhi SA, Ponnaiya B, Panigrahi SK, Hopkins KM, Cui Q, Hei TK, Amundson SA, Lieberman HB. RAD9 deficiency enhances radiation induced bystander DNA damage and transcriptomal response. Radiation Oncology (London, England). 9: 206. PMID 25234738 DOI: 10.1186/1748-717X-9-206  0.08
2015 Cui Q, Li Y. An empirical study on energy efficiency improving capacity: the case of fifteen countries Energy Efficiency. DOI: 10.1007/s12053-015-9337-3  0.077
2014 Cui Q, Shen G, Yan X, Li L, Möhwald H, Bargheer M. Fabrication of Au@Pt multibranched nanoparticles and their application to in situ SERS monitoring. Acs Applied Materials & Interfaces. 6: 17075-81. PMID 25215532 DOI: 10.1021/Am504709A  0.077
2015 Ma Z, Tan Y, Cui G, Feng Y, Cui Q, Song X. Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions. Scientific Reports. 5: 14446. PMID 26403200 DOI: 10.1038/srep14446  0.076
2016 Cui Q, Lv H, Qi Z, Jiang B, Xiao B, Liu L, Ge Y, Hu X. Cross-Regulation between the phz1 and phz2 Operons Maintain a Balanced Level of Phenazine Biosynthesis in Pseudomonas aeruginosa PAO1. Plos One. 11: e0144447. PMID 26735915 DOI: 10.1371/journal.pone.0144447  0.075
2016 Cui Q, Chen S, Ding H, Cheng K. Dynamic model of material removal process in through-feed centerless grinding based on the lagrange equation Key Engineering Materials. 667: 173-180. DOI: 10.4028/www.scientific.net/KEM.667.173  0.075
2015 Chao S, Cui Q, Bai Z, Wang K, Yang L. Template-free synthesis of hierarchical peanut-like Co and N codoped porous carbon with highly efficient catalytic activity for oxygen reduction reaction Electrochimica Acta. DOI: 10.1016/j.electacta.2015.01.212  0.075
2015 Yuan C, Yang S, Wang H, Cui Q. Effects of glycosaminoglycan from Mactra veneriformis on the protein C system and expression of relevant factors in human umbilical vein endothelial cells. Blood Coagulation & Fibrinolysis : An International Journal in Haemostasis and Thrombosis. PMID 26340457 DOI: 10.1097/MBC.0000000000000385  0.074
2015 Wang Y, Qiu C, Cui Q. A Large-Scale Analysis of the Relationship of Synonymous SNPs Changing MicroRNA Regulation with Functionality and Disease. International Journal of Molecular Sciences. 16: 23545-23555. PMID 26437399 DOI: 10.3390/ijms161023545  0.074
2015 Cui Q, Xie P. Correlation Between Daam2 Expression Changes and Demyelination in Guillain-Barre Syndrome. Cellular and Molecular Neurobiology. PMID 26293489 DOI: 10.1007/s10571-015-0248-9  0.074
2016 Zhang Y, Guo F, Cui Q, Lu M, Song X, Tang H, Li Q. Measurement and Correlation of the Solubility of Vanillic Acid in Eight Pure and Water + Ethanol Mixed Solvents at Temperatures from (293.15 to 323.15) K Journal of Chemical and Engineering Data. 61: 420-429. DOI: 10.1021/acs.jced.5b00619  0.073
2015 Zhao T, Shi J, Bindlish R, Jackson TJ, Kerr YH, Cosh MH, Cui Q, Li Y, Xiong C, Che T. Refinement of SMOS multiangular brightness temperature toward soil moisture retrieval and its analysis over reference targets Ieee Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 8: 589-603. DOI: 10.1109/Jstars.2014.2336664  0.072
2014 Wang YF, Liu F, Long ZL, Duan XJ, Cui Q, Yan JH, Chen HF. Steady-state BOLD response modulates low frequency neural oscillations. Scientific Reports. 4: 7376. PMID 25488025 DOI: 10.1038/srep07376  0.072
2016 Wei CA, Cui QC, Lin LL, Jiang SD. Computation of large-scale electric field in free space Advances in Intelligent Systems and Computing. 387: 55-63. DOI: 10.1007/978-3-319-23204-1_7  0.071
2024 Cui Q, Antunes J, Wanke P, Tan Y, Roubaud D, Jabbour CJC. The impact of Chinese airport infrastructure on airline pollutant emissions: A hybrid stochastic-neural network approach based on utility functions. Journal of Environmental Management. 352: 120117. PMID 38237336 DOI: 10.1016/j.jenvman.2024.120117  0.07
2014 Song XP, Tian JH, Cui Q, Zhang TT, Yang KH, Ding GW. Could clinical pathways improve the quality of care in patients with gastrointestinal cancer? A meta-analysis. Asian Pacific Journal of Cancer Prevention : Apjcp. 15: 8361-6. PMID 25339029  0.07
2014 Tan X, Xiao H, Han Y, Hong X, Cui Q, Zhou Z. Encoded protein from ycbR gene of enterohemorrhagic Escherichia coli O157:H7 associated with adherence to HEp-2 cells. Microbiological Research. 169: 855-61. PMID 24680289 DOI: 10.1016/j.micres.2014.03.001  0.07
2015 Wang L, Zhang X, Chan JY, Shan L, Cui G, Cui Q, Wang Y, Li J, Chen H, Zhang Q, Yu P, Han Y, Wang Y, Lee SM. A novel danshensu derivative prevents cardiac dysfunction and improves the chemotherapeutic efficacy of doxorubicin in breast cancer cells. Journal of Cellular Biochemistry. PMID 26058377 DOI: 10.1002/Jcb.25253  0.07
2015 Cui Q, Li X, Zhu H. Curcumin ameliorates dopaminergic neuronal oxidative damage via activation of the Akt/Nrf2 pathway. Molecular Medicine Reports. PMID 26648392 DOI: 10.3892/mmr.2015.4657  0.069
2015 Yao C, Cui Q, Peng J, Xu X, Liu R, Wang J, Tian Y, Li L. Solution processed blue phosphorescent organic light emitting diodes using a Ge-based small molecular host Journal of Materials Chemistry C. 3: 5017-5025. DOI: 10.1039/c5tc00612k  0.069
2015 Wang H, Wang Y, Zhao L, Cui Q, Wang Y, Du G. Pinocembrin attenuates MPP(+)-induced neurotoxicity by the induction of heme oxygenase-1 through ERK1/2 pathway. Neuroscience Letters. PMID 26655464 DOI: 10.1016/j.neulet.2015.11.048  0.068
2015 Zhang J, Liu YJ, Cui GZ, Cui Q. A novel arabinose-inducible genetic operation system developed for Clostridium cellulolyticum. Biotechnology For Biofuels. 8: 36. PMID 25763107 DOI: 10.1186/s13068-015-0214-2  0.067
2015 Wang YF, Long Z, Cui Q, Liu F, Jing XJ, Chen H, Guo XN, Yan JH, Chen HF. Low frequency steady-state brain responses modulate large scale functional networks in a frequency-specific means. Human Brain Mapping. PMID 26512872 DOI: 10.1002/hbm.23037  0.067
2015 Ma CL, Wu XX, Huang FX, Li M, Wang XX, Zhou Q, Li FF, Cui QL. Brillouin scattering study on molecular liquid under high pressure and high temperature conditions Gaoya Wuli Xuebao/Chinese Journal of High Pressure Physics. 29: 35-41. DOI: 10.11858/gywlxb.2015.01.006  0.067
2015 Mitzscherling S, Cui Q, Koopman W, Bargheer M. Dielectric function of two-phase colloid-polymer nanocomposite. Physical Chemistry Chemical Physics : Pccp. 17: 29465-74. PMID 26487371 DOI: 10.1039/c5cp04326c  0.067
2015 Mao S, Cui Q, Piao M. Tolerance analysis of multilayer diffractive optics based on polychromatic integral diffraction efficiency. Applied Optics. 54: 9528-32. PMID 26560782  0.066
2015 Shi X, Cui Q, Zheng Y, Peng S, Wang G, Xie Y. Correction: Effect of selective oxidation of bacterial cellulose on degradability in phosphate buffer solution and their affinity for epidermal cell attachment Rsc Advances. 5: 9009. DOI: 10.1039/c4ra90063d  0.066
2015 Cui Q, Fu M, Zhou M, Chang N, Pan Y, Jiang M, Sun Z, Bai G. Bioactivity-based ultra-performance liquid chromatography-coupled quadrupole time-of-flight mass spectrometry for NF-κB inhibitors identification in Chinese Medicinal Preparation Bufei Granule. Biomedical Chromatography : Bmc. PMID 26632982 DOI: 10.1002/bmc.3664  0.066
2015 Zhang Y, Cui Q, Zhu H. Design of staring conformal optical system based on fixed corrector Guangxue Xuebao/Acta Optica Sinica. 35. DOI: 10.3788/AOS201535.0122004  0.066
2015 Jian Z, Zhu H, Wu X, Cui H, Li D, Jiang J, Gao C, Wang Q, Cui Q. Plasma-assisted synthesis and pressure-induced structural transition of single-crystalline SnSe nanosheets Nanoscale. 7: 10807-10816. DOI: 10.1039/c5nr02131f  0.066
2014 Li J, Ma W, Zeng P, Wang J, Geng B, Yang J, Cui Q. LncTar: a tool for predicting the RNA targets of long noncoding RNAs. Briefings in Bioinformatics. PMID 25524864 DOI: 10.1093/bib/bbu048  0.066
2016 Wang H, Cui Q, Liu B, Gao Y, Li Z, Ma Y. Compression and shear on lead in a rotational diamond anvil cell High Pressure Research. 1-8. DOI: 10.1080/08957959.2015.1130827  0.065
2015 Jiang Q, Wang H, Yuan T, Tao X, Cui Q. Overlaid-pilot based channel state information feedback for multicell cooperative networks Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 223-227. DOI: 10.1109/PIMRC.2015.7343299  0.065
2015 Cheng CH, Guo RY, Cui Q, Song HB, Tang LF. Synthesis and catalytic activity of N-heterocyclic carbene metal carbonyl complexes based on 1-[2-(pyrazol-1-yl)phenyl]imidazole Transition Metal Chemistry. 40: 297-304. DOI: 10.1007/s11243-015-9917-2  0.065
2014 Yang X, Li CJ, Wan Y, Smith P, Shang G, Cui Q. Antioxidative fullerol promotes osteogenesis of human adipose-derived stem cells. International Journal of Nanomedicine. 9: 4023-31. PMID 25187705 DOI: 10.2147/IJN.S66785  0.065
2015 Cui R, Zhang H, Guo X, Cui Q, Wang J, Dai J. Proteomic analysis of cell proliferation in a human hepatic cell line (HL-7702) induced by perfluorooctane sulfonate using iTRAQ. Journal of Hazardous Materials. 299: 361-370. PMID 26143199 DOI: 10.1016/j.jhazmat.2015.06.031  0.064
2015 Tao M, Cui Q, Tao X, Xiao H. Realtime dynamic clustering for interference and traffic adaptation in wireless TDD system Ieee Ssci 2014 - 2014 Ieee Symposium Series On Computational Intelligence - Cipls 2014: 2014 Ieee Symposium On Computational Intelligence in Production and Logistics Systems, Proceedings. 128-133. DOI: 10.1109/CIPLS.2014.7007171  0.064
2015 Chao S, Cui Q, Wang K, Bai Z, Yang L, Qiao J. Template-free synthesis of hierarchical yolk-shell Co and N codoped porous carbon microspheres with enhanced performance for oxygen reduction reaction Journal of Power Sources. 288: 128-135. DOI: 10.1016/j.jpowsour.2015.04.049  0.063
2015 Lee RY, Chen RI, Kasuga T, Cui QN, Porco TC, Lin SC. The Effect of Cumulative Dissipated Energy on Changes in Intraocular Pressure After Uncomplicated Cataract Surgery by Phacoemulsification. Journal of Glaucoma. PMID 26317481 DOI: 10.1097/IJG.0000000000000311  0.063
2015 Cui J, Meng Q, Zhang X, Cui Q, Zhou W, Li S. Design and Synthesis of New α-Naphthoflavones as Cytochrome P450 (CYP) 1B1 Inhibitors To Overcome Docetaxel-Resistance Associated with CYP1B1 Overexpression. Journal of Medicinal Chemistry. 58: 3534-47. PMID 25799264 DOI: 10.1021/acs.jmedchem.5b00265  0.063
2015 Cui Q, Huang D, Song XP, Tian JH, Yang KH. Comparative analysis of clinical pathway appraisal tools and reporting standards Chinese Journal of Evidence-Based Medicine. 15: 810-815. DOI: 10.7507/1672-2531.20150141  0.063
2016 Cui Q, Chen S, Ding H, Cheng K. An investigation on the workpiece roundness generation in centerless grinding based on the integration of virtual machine tool and workpiece material removal mechanism Key Engineering Materials. 667: 588-594. DOI: 10.4028/www.scientific.net/KEM.667.588  0.062
2016 Fu XF, Yao K, Du X, Li Y, Yang XY, Yu M, Li MZ, Cui QH. PGC-1α regulates the cell cycle through ATP and ROS in CH1 cells. Journal of Zhejiang University. Science. B. 17: 136-46. PMID 26834014 DOI: 10.1631/jzus.B1500158  0.062
2014 Li HY, Ruan YW, Ren CR, Cui Q, So KF. Mechanisms of secondary degeneration after partial optic nerve transection. Neural Regeneration Research. 9: 565-74. PMID 25206855 DOI: 10.4103/1673-5374.130093  0.062
2023 Guo Q, Hou X, Cui Q, Li S, Shen G, Luo Q, Wu H, Chen H, Liu Y, Chen A, Zhang Z. Pectin mediates the mechanism of host blood glucose regulation through intestinal flora. Critical Reviews in Food Science and Nutrition. 1-23. PMID 36756885 DOI: 10.1080/10408398.2023.2173719  0.062
2015 Kandahari AM, Yang X, Dighe AS, Pan D, Cui Q. Recognition of Immune Response for the Early Diagnosis and Treatment of Osteoarthritis. Journal of Immunology Research. 2015: 192415. PMID 26064995 DOI: 10.1155/2015/192415  0.062
2015 Zhao Z, Sun Y, Yang S, Cui Q, Li Z. FAK activity is required for HGF to suppress TGF-β1-induced cellular proliferation. In Vitro Cellular & Developmental Biology. Animal. PMID 25898827 DOI: 10.1007/s11626-015-9914-y  0.062
2015 Yang C, Madhu V, Thomas C, Yang X, Du X, Dighe AS, Cui Q. Inhibition of differentiation and function of osteoclasts by dimethyl sulfoxide (DMSO). Cell and Tissue Research. PMID 26224539 DOI: 10.1007/s00441-015-2245-1  0.062
2015 Cui Q, Pamukcu S, Pervizpour M. Impact wave monitoring in soil using a dynamic fiber sensor based on stimulated brillouin scattering. Sensors (Basel, Switzerland). 15: 8163-72. PMID 25856327 DOI: 10.3390/S150408163  0.062
2015 Sha Y, Mathew I, Cui Q, Clay M, Gao F, Zhang XJ, Gu Z. Rapid degradation of azo dye methyl orange using hollow cobalt nanoparticles. Chemosphere. 144: 1530-1535. PMID 26498101 DOI: 10.1016/J.Chemosphere.2015.10.040  0.062
2022 Cui Q, Lei Y, Li Y. Protocol to calculate aircraft emissions for international air routes in South America. Star Protocols. 4: 101952. PMID 36528857 DOI: 10.1016/j.xpro.2022.101952  0.061
2015 Bie M, Lv Y, Ren C, Xing F, Cui Q, Xiao J, So KF. Lycium barbarum polysaccharide improves bipolar pulse current-induced microglia cell injury through modulating autophagy. Cell Transplantation. 24: 419-28. PMID 25671388 DOI: 10.3727/096368915X687453  0.061
2015 Cui Q, Pan Y, Xu X, Zhang W, Wu X, Qu S, Liu X. The metabolic profile of acteoside produced by human or rat intestinal bacteria or intestinal enzyme in vitro employed UPLC-Q-TOF-MS. Fitoterapia. PMID 26705842 DOI: 10.1016/j.fitote.2015.12.011  0.06
2015 Cui Q, Wu T, Chen H, Qin L, Yu Z, Shen H, Wang Z. Effective treatment with para-aminomethylbenzoic acid for chronic disseminated intravascular coagulation associated with aortic dissection. Blood Coagulation & Fibrinolysis : An International Journal in Haemostasis and Thrombosis. 26: 334-6. PMID 24695090 DOI: 10.1097/MBC.0000000000000104  0.06
2015 Chen Y, Cui Q, Xu Y, Yang S, Gao M, Wang Y. Effects of tung oilseed FAD2 and DGAT2 genes on unsaturated fatty acid accumulation in Rhodotorula glutinis and Arabidopsis thaliana. Molecular Genetics and Genomics : Mgg. PMID 25754996 DOI: 10.1007/s00438-015-1011-0  0.06
2015 Tang SX, Zhu HY, Jiang JR, Wu XX, Dong YX, Zhang J, Yang DP, Cui QL. Anomalous phase transition of InN nanowires under high pressure Chinese Physics B. 24. DOI: 10.1088/1674-1056/24/9/096101  0.06
2015 Gu HJ, Cui QF, Ma DH, Meng FY, Zhao XH. Supervisory control model based on semantic knowledge Jilin Daxue Xuebao (Gongxueban)/Journal of Jilin University (Engineering and Technology Edition). 45: 645-652. DOI: 10.13229/j.cnki.jdxbgxb201502046  0.06
2014 Wang H, Ji R, Meng J, Cui Q, Zou W, Li L, Wang G, Sun L, Li Z, Huo L, Fan Y, Penny DJ. Functional changes in pulmonary arterial endothelial cells associated with BMPR2 mutations. Plos One. 9: e106703. PMID 25187962 DOI: 10.1371/Journal.Pone.0106703  0.059
2014 Yuan C, Chai A, Cui Q, Ye E, Zhang J. Complete mitochondrial genome of Acrossocheilus stenotaeniatus (Osteichthyes: Cyprinidae). Mitochondrial Dna. 1-2. PMID 25208180 DOI: 10.3109/19401736.2014.933325  0.059
2022 Cui Q, Lei Y, Li Y, Wanke PF. Impacts of the COVID-19 on all aircraft emissions of international routes in South America. Iscience. 104865. PMID 35959473 DOI: 10.1016/j.isci.2022.104865  0.059
2024 Cui Q, Jia Z, Liu Y, Wang Y, Li Y. 24-hour average PM2.5 concentration caused by aircraft in Chinese airports from Jan. 2006 to Dec. 2023. Scientific Data. 11: 284. PMID 38461334 DOI: 10.1038/s41597-024-03110-9  0.059
2015 Xiao ZH, Cui QQ, Li XL, Wang HL, Zhou Q. Ionothermal synthesis for Mg-doped LiMn1.5Ni0.5O4 spinel with structural stability and high-rate performance Ionics. 21: 1261-1267. DOI: 10.1007/s11581-014-1305-y  0.058
2015 Liao Z, Xiong Y, Cui Q. The improvement of zero-current-transition H6 type transformerless PV grid-connected inverter Journal of Computational Information Systems. 11: 6901-6909. DOI: 10.12733/jcis14638  0.058
2015 Qi Y, Cao M, Huang L, Cui Q, Yu L, Wu Y. Compatibility of microbe-weak gel combinational flooding Shiyou Xuebao/Acta Petrolei Sinica. 36: 490-495. DOI: 10.7623/syxb201504010  0.058
2018 Zhu H, Lu J, Zhao H, Chen Z, Cui Q, Lin Z, Wang X, Wang J, Dong H, Wang S, Tan J. Functional Long Noncoding RNAs (lncRNAs) in Clear Cell Kidney Carcinoma Revealed by Reconstruction and Comprehensive Analysis of the lncRNA-miRNA-mRNA Regulatory Network. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 24: 8250-8263. PMID 30444862 DOI: 10.12659/MSM.910773  0.057
2015 Ma S, Zhang Y, Cui Q, Zhao J, Peng Z. Understanding oxygen reactions in aprotic Li-O2 batteries Chinese Physics B. 25. DOI: 10.1088/1674-1056/25/1/018204  0.057
2023 Cui Q, Chen B. Aviation carbon transfer and compensation of international routes in Africa from 2019 to 2021. Scientific Data. 10: 306. PMID 37208402 DOI: 10.1038/s41597-023-02219-7  0.057
2015 Li Y, Zhao Y, Huang R, Cui Q, Lu X, Guo H. A thermodynamic study on the phase behaviour of ethanol and 2-propanol in aqueous ammonium sulphate/sodium sulphate solution Journal of Molecular Liquids. 211: 924-933. DOI: 10.1016/j.molliq.2015.08.021  0.056
2015 Liao F, Zheng Y, Cai J, Fan J, Wang J, Yang J, Cui Q, Xu G, Tang C, Geng B. Catestatin attenuates endoplasmic reticulum induced cell apoptosis by activation type 2 muscarinic acetylcholine receptor in cardiac ischemia/reperfusion. Scientific Reports. 5: 16590. PMID 26567709 DOI: 10.1038/srep16590  0.055
2015 Cui Q, Ding H, Cheng K. An analytical investigation on the workpiece roundness generation and its perfection strategies in centreless grinding Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture. 229: 409-420. DOI: 10.1177/0954405414530899  0.055
2015 Peng S, Wang K, Gu Y, Chen Y, Nan X, Xing J, Cui Q, Chen Y, Ge Q, Zhao H. TRAF3IP3, a novel autophagy up-regulated gene, is involved in marginal zone B lymphocyte development and survival. Clinical and Experimental Immunology. PMID 26011558 DOI: 10.1111/cei.12658  0.055
2014 Yang Z, Liu W, Cui Q, Niu W, Li H, Zhao X, Wei X, Wang X, Huang S, Dong D, Lu S, Bai C, Li Y, Huang L, Yuan J. Prevalence and detection of Stenotrophomonas maltophilia carrying metallo-β-lactamase blaL1 in Beijing, China. Frontiers in Microbiology. 5: 692. PMID 25538701 DOI: 10.3389/fmicb.2014.00692  0.054
2014 Zhang X, Liu C, Cui Q. [Portable ECG measuring system with non-contact electrode]. Zhongguo Yi Liao Qi Xie Za Zhi = Chinese Journal of Medical Instrumentation. 38: 168-70, 185. PMID 25241508  0.054
2014 Liu F, Zhu C, Wang Y, Guo W, Li M, Wang W, Long Z, Meng Y, Cui Q, Zeng L, Gong Q, Zhang W, Chen H. Disrupted cortical hubs in functional brain networks in social anxiety disorder. Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology. PMID 25534495 DOI: 10.1016/j.clinph.2014.11.014  0.054
2015 Preisner A, Albrecht S, Cui QL, Hucke S, Ghelman J, Hartmann C, Taketo MM, Antel J, Klotz L, Kuhlmann T. Non-steroidal anti-inflammatory drug indometacin enhances endogenous remyelination. Acta Neuropathologica. PMID 25943886 DOI: 10.1007/S00401-015-1426-Z  0.054
2015 Li CJ, Madhu V, Balian G, Dighe AS, Cui Q. Cross-Talk Between VEGF and BMP-6 Pathways Accelerates Osteogenic Differentiation of Human Adipose-Derived Stem Cells. Journal of Cellular Physiology. PMID 25753222 DOI: 10.1002/jcp.24983  0.054
2015 Cui Q, Guo F, Li QS, Wang K, Wang M, Wang WX, Gao XJ. Study and application of BH-type high efficiency packing in technical transformation of pre-cooling tower of coal to olefins Xiandai Huagong/Modern Chemical Industry. 35: 125-127. DOI: 10.16606/j.cnki.issn0253-4320.2015.12.033  0.054
2015 Fishero BA, Kohli N, Das A, Christophel JJ, Cui Q. Current concepts of bone tissue engineering for craniofacial bone defect repair. Craniomaxillofacial Trauma & Reconstruction. 8: 23-30. PMID 25709750 DOI: 10.1055/s-0034-1393724  0.054
2015 Yin G, Gong Y, Wang C, Cui Q. Study on effects of novel point grinding wheels processing parameters on grinding temperature Zhongguo Jixie Gongcheng/China Mechanical Engineering. 26: 716-720. DOI: 10.3969/j.issn.1004-132X.2015.06.002  0.053
2017 Zhang N, Lu Y, Cui Q, Wang Y. Investigation of Unintentional Video Emanations From a VGA Connector in the Desktop Computers Ieee Transactions On Electromagnetic Compatibility. 59: 1826-1834. DOI: 10.1109/TEMC.2017.2699479  0.053
2015 Yao XH, Zhang DY, Duan MH, Cui Q, Xu WJ, Luo M, Li CY, Zu YG, Fu YJ. Preparation and determination of phenolic compounds from Pyrola incarnata Fisch. with a green polyols based-deep eutectic solvent Separation and Purification Technology. 149: 116-123. DOI: 10.1016/j.seppur.2015.03.037  0.053
2023 Cheng J, Hou X, Cui Q, Shen G, Li S, Luo Q, Zhou M, Chen H, Zhang Z. Separation and Purification of Hydroxyl-α-Sanshool from DC. by Silica Gel Column Chromatography. International Journal of Molecular Sciences. 24. PMID 36834566 DOI: 10.3390/ijms24043156  0.053
2015 Cui Q, Zhang Q. Global stability of a discrete SIR epidemic model with vaccination and treatment Journal of Difference Equations and Applications. 21: 111-117. DOI: 10.1080/10236198.2014.990450  0.052
2015 Zheng SP, Han W, Chu HR, Wang Y, Zhang L, Zhu LL, Zhang GQ, Cui QQ. [Effect of electroacupuncture and moxibustion pretreatment on expression of cerebral micro- RNAs and Aquaporin protein-4 in cerebral infarction rats]. Zhen Ci Yan Jiu = Acupuncture Research / [Zhongguo Yi Xue Ke Xue Yuan Yi Xue Qing Bao Yan Jiu Suo Bian Ji]. 40: 99-103. PMID 26054192  0.052
2017 Yu T, Zhang X, Zhong L, Cui Q, Hu X, Li B, Wang Z, Dai Y, Zheng Y, Bin P. The use of a 0.20 μm particulate matter filter decreases cytotoxicity in lung epithelial cells following air-liquid interface exposure to motorcycle exhaust. Environmental Pollution (Barking, Essex : 1987). 227: 287-295. PMID 28477553 DOI: 10.1016/j.envpol.2017.04.080  0.052
2015 Li H, Cui Q, Zhang Z, Fu L, Luo Q. Nonlinear optical microscopy for immunoimaging: a custom optimized system of high-speed, large-area, multicolor imaging. Quantitative Imaging in Medicine and Surgery. 5: 30-9. PMID 25694951 DOI: 10.3978/j.issn.2223-4292.2014.11.07  0.052
2015 Wang W, Chen Q, Cui Q, Ma J, Zhang H. Preparation of c-axis oriented YBa2Cu3O7 polycrystalline ceramics by sol-gel method Physica C: Superconductivity and Its Applications. 511: 1-3. DOI: 10.1016/j.physc.2015.02.003  0.052
2014 Yang Q, Li JS, Liu YF, Han JL, Qi YL, Li YS, Cui Q, Wang WP. [Dynamic studies on photosynthetic and growth characteristics of Angecila dahurcia]. Zhongguo Zhong Yao Za Zhi. 39: 2881-5. PMID 25507548  0.051
2014 Yang Q, Li JS, Liu YF, Han JL, Qi YL, Li YS, Cui Q, Wang WP. [Dynamic studies on photosynthetic and growth characteristics of Angecila dahurcia]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 39: 2881-5. PMID 25423826  0.051
2015 Chai LJ, Jiang XW, Zhang F, Zheng BW, Shu FC, Wang ZL, Cui QF, Dong HP, Zhang ZZ, Hou DJ, She YH. Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains. Journal of Zhejiang University. Science. B. 16: 865-74. PMID 26465134 DOI: 10.1631/jzus.B1500029  0.051
2016 Qu X, Yu H, Jia B, Yu X, Cui Q, Liu Z, Sun C, Chu Y. Association of downregulated HDAC 2 with the impaired mitochondrial function and cytokine secretion in the monocytes/macrophages from gestational diabetes mellitus patients. Cell Biology International. PMID 26936353 DOI: 10.1002/cbin.10598  0.051
2014 Gui T, Bai H, Zeng J, Zhong Z, Cao D, Cui Q, Chen J, Yang J, Shen K. Tumor heterogeneity in the recurrence of epithelial ovarian cancer demonstrated by polycomb group proteins. Oncotargets and Therapy. 7: 1705-16. PMID 25285018 DOI: 10.2147/OTT.S67570  0.05
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, ... ... Cui Q, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4  0.05
2015 Cui Q, Peng X, Yao XH, Wei ZF, Luo M, Wang W, Zhao CJ, Fu YJ, Zu YG. Deep eutectic solvent-based microwave-assisted extraction of genistin, genistein and apigenin from pigeon pea roots Separation and Purification Technology. 150: 63-72. DOI: 10.1016/j.seppur.2015.06.026  0.05
2015 Hu Y, Cui Q, Ye Y, Luo Y, Tan Y, Shi J, Huang H. Reduction of Foxp3+ T cell subsets involved in incidence of chronic graft-versus-host disease after allogeneic hematopoietic stem cell transplantation. Hematological Oncology. PMID 26439896 DOI: 10.1002/hon.2255  0.05
2015 Ji Z, Yan H, Cui Q, Wang E, Chen W, Chen W. Genetic divergence and gene flow among Mesorhizobium strains nodulating the shrub legume Caragana. Systematic and Applied Microbiology. 38: 176-83. PMID 25864639 DOI: 10.1016/j.syapm.2015.02.007  0.05
2015 Zhang Q, Chen S, Zhang L, Cui Q, Liu Z, Wang H. Dynamic adsorption of n-heptane/methylhexane/2,2,4-trimethylpentane and refining of high purity n-heptane on UiO-66 Journal of Porous Materials. DOI: 10.1007/s10934-015-0067-x  0.05
2008 Cui Q, Jiang W, Wang Y, Lv C, Luo J, Zhang W, Lin F, Yin Y, Cai R, Wei P, Qian C. Transfer of suppressor of cytokine signaling 3 by an oncolytic adenovirus induces potential antitumor activities in hepatocellular carcinoma. Hepatology (Baltimore, Md.). 47: 105-12. PMID 17935223 DOI: 10.1002/hep.21951  0.049
2015 Cui Q, Zhu S, Yan Y, Ye Q, Ziener U, Cao Z. Superparamagnetic Fe3O4/Poly(N-isopropyl acrylamide) Nanocomposites Synthesized in Inverse Miniemulsions: Magnetic and Particle Properties. Journal of Nanoscience and Nanotechnology. 15: 4608-18. PMID 26369088  0.048
2014 Chai A, Zhang J, Cui Q, Yuan C. Mitochondrial genome of Onychostoma macrolepis (Osteichthyes: Cyprinidae). Mitochondrial Dna. PMID 24548011 DOI: 10.3109/19401736.2014.883605  0.048
2016 Sun Y, Tang D, Cui Q. Comparison of a fuzzy control and the data-driven model for flood forecasting Natural Hazards. 1-18. DOI: 10.1007/s11069-016-2220-5  0.048
2016 Kremer D, Cui QL, Göttle P, Kuhlmann T, Hartung HP, Antel J, Küry P. CXCR7 Is Involved in Human Oligodendroglial Precursor Cell Maturation. Plos One. 11: e0146503. PMID 26741980 DOI: 10.1371/Journal.Pone.0146503  0.048
2016 Hu Y, Sun J, Wu Z, Yu J, Cui Q, Pu C, Liang B, Luo Y, Shi J, Jin A, Xiao L, Huang H. Predominant cerebral cytokine release syndrome in CD19-directed chimeric antigen receptor-modified T cell therapy. Journal of Hematology & Oncology. 9: 70. PMID 27526682 DOI: 10.1186/s13045-016-0299-5  0.047
2015 Meng QB, Kang WM, Yu JC, Liu YQ, Ma ZQ, Zhou L, Cui QC, Zhou WX. Overexpression of eukaryotic translation initiation factor 5A2 (EIF5A2) correlates with cell aggressiveness and poor survival in gastric cancer. Plos One. 10: e0119229. PMID 25793713 DOI: 10.1371/journal.pone.0119229  0.047
2019 Zhao H, Chen J, Chen J, Kong X, Zhu H, Zhang Y, Dong H, Wang J, Ren Q, Wang Q, Chen S, Deng Z, Chen Z, Cui Q, Zheng J, et al. miR-192/215-5p act as tumor suppressors and link Crohn's disease and colorectal cancer by targeting common metabolic pathways: An integrated informatics analysis and experimental study. Journal of Cellular Physiology. PMID 31020657 DOI: 10.1002/jcp.28709  0.047
2018 Lu J, Zhu L, Zheng LP, Cui Q, Zhu HH, Zhao H, Shen ZJ, Dong HY, Chen SS, Wu WZ, Tan JM. Overexpression of ULK1 Represents a Potential Diagnostic Marker for Clear Cell Renal Carcinoma and the Antitumor Effects of SBI-0206965. Ebiomedicine. PMID 30078736 DOI: 10.1016/j.ebiom.2018.07.034  0.047
2015 Zhang Z, Zhang X, Hu T, Zhou W, Cui Q, Tian J, Zheng Y, Fan Q. Discovery of toxin-encoding genes from the false viper Macropisthodon rudis, a rear-fanged snake, by transcriptome analysis of venom gland. Toxicon : Official Journal of the International Society On Toxinology. PMID 26403866 DOI: 10.1016/j.toxicon.2015.09.021  0.047
2015 Fu X, Cui QQ, Ning JP, Fu SS, Liao XH. High-Flux Hemodialysis Benefits Hemodialysis Patients by Reducing Serum FGF-23 Levels and Reducing Vascular Calcification. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 21: 3467-73. PMID 26558428 DOI: 10.12659/MSM.894894  0.047
2014 Zheng X, Gorovoy IR, Mao J, Jin J, Chen X, Cui QN. Recurrent ocular involvement in pediatric atypical hemolytic uremic syndrome. Journal of Pediatric Ophthalmology and Strabismus. 51: e62-5. PMID 25608228 DOI: 10.3928/01913913-20140923-03  0.046
Hide low-probability matches.