Krishna Kumar, B.Sc. (Hons.), Ph.D. - Publications

Affiliations: 
Chemistry Tufts University, Boston 
Area:
Chemical Biology, Biophysics, Organic Chemistry, Medicinal Chemistry, Imaging
Website:
http://chem.tufts.edu/faculty/kumar/

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Fountain JN, Hawker MJ, Montanari V, Hartle L, Wu J, Sahoo JK, Davis LM, Kaplan DL, Kumar K. Towards Non-Stick Silk: Tuning the Hydrophobicity of Silk Fibroin Protein. Chembiochem : a European Journal of Chemical Biology. PMID 35998090 DOI: 10.1002/cbic.202200429  0.666
2021 Sicinski KM, Montanari V, Raman VS, Doyle JR, Harwood BN, Song YC, Fagan MP, Rios M, Haines DR, Kopin AS, Beinborn M, Kumar K. A Non-Perturbative Molecular Grafting Strategy for Stable and Potent Therapeutic Peptide Ligands. Acs Central Science. 7: 454-466. PMID 33791428 DOI: 10.1021/acscentsci.0c01237  0.768
2019 Adaligil E, Patil K, Rodenstein M, Kumar K. Discovery of Peptide Antibiotics Composed of d-Amino Acids. Acs Chemical Biology. PMID 31243959 DOI: 10.1021/Acschembio.9B00234  0.336
2015 Heller D, Doyle JR, Raman VS, Beinborn M, Kumar K, Kopin AS. Novel probes establish MrgprX1 variants as loss and gain of function receptors. The Journal of Pharmacology and Experimental Therapeutics. PMID 26582731 DOI: 10.1124/Jpet.115.227058  0.669
2015 Yüksel D, Bianco PR, Kumar K. De novo design of protein mimics of B-DNA. Molecular Biosystems. PMID 26568416 DOI: 10.1039/C5Mb00524H  0.525
2015 Zamora CY, Ryan MJ, d'Alarcao M, Kumar K. Sialidases as regulators of bioengineered cellular surfaces. Glycobiology. 25: 784-91. PMID 25795684 DOI: 10.1093/Glycob/Cwv019  0.764
2015 Akçay G, Ramphal JY, d'Alarcao M, Kumar K. Total synthesis of trifluorobutyryl-modified, globally protected sialyl Lewis x by a convergent [2+2] approach. Tetrahedron Letters. 56: 109-114. PMID 25530638 DOI: 10.1016/J.Tetlet.2014.11.029  0.65
2014 Doyle JR, Harwood BN, Krishnaji ST, Krishnamurthy VM, Lin WE, Fortin JP, Kumar K, Kopin AS. A two-step strategy to enhance activity of low potency peptides. Plos One. 9: e110502. PMID 25391026 DOI: 10.1371/Journal.Pone.0110502  0.365
2014 Babu RA, Chandrashekar P, Kumar KK, Reddy GS, Chandra KL, Rao V, Reddy B. A study on oral mucosal lesions in 3500 patients with dermatological diseases in South India. Annals of Medical and Health Sciences Research. 4: S84-93. PMID 25184094 DOI: 10.4103/2141-9248.138019  0.376
2014 Chu AH, Minciunescu A, Montanari V, Kumar K, Bennett CS. An air- and water-stable iodonium salt promoter for facile thioglycoside activation. Organic Letters. 16: 1780-2. PMID 24597905 DOI: 10.1021/Ol5004059  0.664
2013 Krishnamurthy VM, Kumar K. Fluorination in the design of membrane protein assemblies. Methods in Molecular Biology (Clifton, N.J.). 1063: 227-43. PMID 23975781 DOI: 10.1007/978-1-62703-583-5_13  0.328
2013 Zamora CY, d'Alarcao M, Kumar K. Fluorogenic sialic acid glycosides for quantification of sialidase activity upon unnatural substrates. Bioorganic & Medicinal Chemistry Letters. 23: 3406-10. PMID 23639536 DOI: 10.1016/J.Bmcl.2013.03.076  0.748
2013 Lozano MM, Liu Z, Sunnick E, Janshoff A, Kumar K, Boxer SG. Colocalization of the ganglioside G(M1) and cholesterol detected by secondary ion mass spectrometry. Journal of the American Chemical Society. 135: 5620-30. PMID 23514537 DOI: 10.1021/Ja310831M  0.444
2013 Krishnamurthy VM, Raman VS, Mowery RA, Hentz M, Baleja JD, Shaw BF, Kumar K. Ligand-induced protein mobility in complexes of carbonic anhydrase II and benzenesulfonamides with oligoglycine chains. Plos One. 8: e57629. PMID 23472094 DOI: 10.1371/Journal.Pone.0057629  0.648
2012 Clark GA, Baleja JD, Kumar K. Cross-strand interactions of fluorinated amino acids in β-hairpin constructs. Journal of the American Chemical Society. 134: 17912-21. PMID 23078597 DOI: 10.1021/Ja212080F  0.615
2012 Lorenz B, Álvarez de Cienfuegos L, Oelkers M, Kriemen E, Brand C, Stephan M, Sunnick E, Yüksel D, Kalsani V, Kumar K, Werz DB, Janshoff A. Model system for cell adhesion mediated by weak carbohydrate-carbohydrate interactions. Journal of the American Chemical Society. 134: 3326-9. PMID 22296574 DOI: 10.1021/Ja210304J  0.742
2012 Lorenz B, Oelkers M, Brand C, Kriemen E, Stephan M, Sunnick E, Yüksel D, Kumar K, Werz DB, Janshoff A. Weak Carbohydrate-Carbohydrate Interactions Measured by Colloidal Probe Microscopy Biophysical Journal. 102: 427a. DOI: 10.1016/J.Bpj.2011.11.2333  0.524
2012 Lozano MM, Liu Z, Kumar K, Boxer SG. Partitioning of Cholesterol and Ganglioside GM1 in Phase Separated Lipid Bilayers Imaged by Secondary Ion Mass Spectrometry Biophysical Journal. 102: 222a. DOI: 10.1016/J.Bpj.2011.11.1217  0.435
2010 Kumar KR, Basha R, Harish BR, Sanjay TV, Vinay M, Prabhu S, Babu R. A coverage evaluation survey of JE vaccination in two districts of Karnataka. The Journal of Communicable Diseases. 42: 179-84. PMID 22471181  0.391
2010 Dafik L, d'Alarcao M, Kumar K. Modulation of cellular adhesion by glycoengineering. Journal of Medicinal Chemistry. 53: 4277-84. PMID 20438083 DOI: 10.1021/Jm100374G  0.766
2010 Molski MA, Goodman JL, Craig CJ, Meng H, Kumar K, Schepartz A. Beta-peptide bundles with fluorous cores. Journal of the American Chemical Society. 132: 3658-9. PMID 20196598 DOI: 10.1021/Ja910903C  0.503
2010 Liu Z, Kumar K. Trifluoromethyl derivatization of the ganglioside, GM1 Synthesis. 1905-1908. DOI: 10.1055/S-0029-1218777  0.332
2009 Akçay G, Kumar K. A New Paradigm for Protein Design and Biological Self-Assembly. Journal of Fluorine Chemistry. 130: 1178-1182. PMID 20161419 DOI: 10.1016/J.Jfluchem.2009.09.002  0.68
2009 Dafik L, Kalsani V, Leung AK, Kumar K. Fluorinated lipid constructs permit facile passage of molecular cargo into living cells. Journal of the American Chemical Society. 131: 12091-3. PMID 19673473 DOI: 10.1021/Ja902777D  0.764
2009 Schuy S, Schäfer E, Yoder NC, Kumar K, Vogel R, Janshoff A. Lipopeptides derived from HIV and SIV mimicking the prehairpin intermediate of gp41 on solid supported lipid bilayers. Journal of Structural Biology. 168: 125-36. PMID 19406246 DOI: 10.1016/J.Jsb.2009.04.006  0.667
2009 Montclare JK, Son S, Clark GA, Kumar K, Tirrell DA. Biosynthesis and stability of coiled-coil peptides containing (2S,4R)-5,5,5-trifluoroleucine and (2S,4S)-5,5,5-trifluoroleucine. Chembiochem : a European Journal of Chemical Biology. 10: 84-6. PMID 19090517 DOI: 10.1002/Cbic.200800164  0.586
2009 Schuy S, Schäfer E, Yoder NC, Hobe S, Kumar K, Vogel R, Janshoff A. Coiled-coil lipopeptides mimicking the prehairpin intermediate of glycoprotein gp41. Angewandte Chemie (International Ed. in English). 48: 751-4. PMID 19090512 DOI: 10.1002/Anie.200803080  0.615
2009 Meng H, Clark GA, Kumar K. Fluorinated Amino Acids and Biomolecules in Protein Design and Chemical Biology Fluorine in Medicinal Chemistry and Chemical Biology. 411-446. DOI: 10.1002/9781444312096.ch16  0.625
2008 Meng H, Krishnaji ST, Beinborn M, Kumar K. Influence of selective fluorination on the biological activity and proteolytic stability of glucagon-like peptide-1. Journal of Medicinal Chemistry. 51: 7303-7. PMID 18950150 DOI: 10.1021/Jm8008579  0.532
2008 Dafik L, d'Alarcao M, Kumar K. Fluorination of mammalian cell surfaces via the sialic acid biosynthetic pathway. Bioorganic & Medicinal Chemistry Letters. 18: 5945-7. PMID 18819798 DOI: 10.1016/J.Bmcl.2008.09.010  0.767
2008 Torres O, Yüksel D, Bernardina M, Kumar K, Bong D. Peptide tertiary structure nucleation by side-chain crosslinking with metal complexation and double "click" cycloaddition. Chembiochem : a European Journal of Chemical Biology. 9: 1701-5. PMID 18600813 DOI: 10.1002/Cbic.200800040  0.742
2008 Schuy S, Faiss S, Yoder NC, Kalsani V, Kumar K, Janshoff A, Vogel R. Structure and thermotropic phase behavior of fluorinated phospholipid bilayers: a combined attenuated total reflection FTIR spectroscopy and imaging ellipsometry study. The Journal of Physical Chemistry. B. 112: 8250-6. PMID 18563929 DOI: 10.1021/Jp800711J  0.646
2008 Morstadt L, Bohm A, Yüksel D, Kumar K, Stollar BD, Baleja JD. Engineering and characterization of a single chain surrogate light chain variable domain. Protein Science : a Publication of the Protein Society. 17: 458-65. PMID 18287279 DOI: 10.1110/Ps.073269808  0.512
2007 Meng H, Kumar K. Antimicrobial activity and protease stability of peptides containing fluorinated amino acids. Journal of the American Chemical Society. 129: 15615-22. PMID 18041836 DOI: 10.1021/Ja075373F  0.444
2007 Yoder NC, Kalsani V, Schuy S, Vogel R, Janshoff A, Kumar K. Nanoscale patterning in mixed fluorocarbon-hydrocarbon phospholipid bilayers. Journal of the American Chemical Society. 129: 9037-43. PMID 17602478 DOI: 10.1021/Ja070950L  0.661
2007 Bose K, Yoder NC, Kumar K, Baleja JD. The role of conserved histidines in the structure and stability of human papillomavirus type 16 E2 DNA-binding domain. Biochemistry. 46: 1402-11. PMID 17260970 DOI: 10.1021/Bi0611255  0.641
2007 Meng H, Kalsani V, Kumar K. Fluorinated amino acids and reagents in protein design and biomolecule separation Acs Symposium Series. 949: 487-499.  0.428
2006 Yoder NC, Yüksel D, Dafik L, Kumar K. Bioorthogonal noncovalent chemistry: Fluorous phases in chemical biology. Current Opinion in Chemical Biology. 10: 576-83. PMID 17055332 DOI: 10.1016/J.Cbpa.2006.10.007  0.736
2006 Naarmann N, Bilgiçer B, Meng H, Kumar K, Steinem C. Fluorinated interfaces drive self-association of transmembrane alpha helices in lipid bilayers. Angewandte Chemie (International Ed. in English). 45: 2588-91. PMID 16532504 DOI: 10.1002/Anie.200503567  0.46
2006 Yoder NC, Kumar K. Selective protein-protein interactions driven by a phenylalanine interface. Journal of the American Chemical Society. 128: 188-91. PMID 16390146 DOI: 10.1021/Ja055494K  0.684
2006 Montanari V, Kumar K. Enabling routine fluorous capping in solid phase peptide synthesis Journal of Fluorine Chemistry. 127: 565-570. DOI: 10.1016/J.Jfluchem.2005.12.028  0.71
2006 Montanari V, Kumar K. A fluorous capping strategy for Fmoc-based automated and manual solid-phase peptide synthesis European Journal of Organic Chemistry. 874-877. DOI: 10.1002/Ejoc.200500958  0.694
2005 Naarmann N, Bilgiçer B, Kumar K, Steinem C. Controlling association of vesicle embedded peptides by alteration of the physical state of the lipid matrix. Biochemistry. 44: 5188-95. PMID 15794656 DOI: 10.1021/Bi050096F  0.355
2004 Montanari V, Kumar K. Just add water: a new fluorous capping reagent for facile purification of peptides synthesized on the solid phase. Journal of the American Chemical Society. 126: 9528-9. PMID 15291542 DOI: 10.1021/Ja0479033  0.685
2004 Wang P, Fichera A, Kumar K, Tirrell DA. Alternative translations of a single RNA message: an identity switch of (2S,3R)-4,4,4-trifluorovaline between valine and isoleucine codons. Angewandte Chemie (International Ed. in English). 43: 3664-6. PMID 15248267 DOI: 10.1002/Anie.200454036  0.458
2003 Bilgiçer B, Kumar K. Protein Design Using Unnatural Amino Acids Journal of Chemical Education. 80: 1275-1281. DOI: 10.1021/Ed080P1275  0.322
2002 Yoder NC, Kumar K. Fluorinated amino acids in protein design and engineering. Chemical Society Reviews. 31: 335-41. PMID 12491748 DOI: 10.1039/B201097F  0.649
2002 Xing X, Fichera A, Kumar K. A simple and efficient method for the resolution of all four diastereomers of 4,4,4-trifluorovaline and 5,5,5-trifluoroleucine. The Journal of Organic Chemistry. 67: 1722-5. PMID 11871915 DOI: 10.1021/Jo011097Q  0.602
2001 Bilgiçer B, Xing X, Kumar K. Programmed self-sorting of coiled coils with leucine and hexafluoroleucine cores. Journal of the American Chemical Society. 123: 11815-6. PMID 11716746 DOI: 10.1021/Ja016767O  0.385
2001 Bilgiçer B, Fichera A, Kumar K. A coiled coil with a fluorous core. Journal of the American Chemical Society. 123: 4393-9. PMID 11457223 DOI: 10.1021/ja002961j  0.564
2001 Xing X, Fichera A, Kumar K. A novel synthesis of enantiomerically pure 5,5,5,5',5',5'-hexafluoroleucine. Organic Letters. 3: 1285-6. PMID 11348215 DOI: 10.1021/Ol015567E  0.597
1998 Kumar K, Kurnikov IV, Beratan DN, Waldeck DH, Zimmt MB. Use of modern electron transfer theories to determine electronic coupling matrix elements in intramolecular systems Journal of Physical Chemistry A. 102: 5529-5541. DOI: 10.1021/Jp980113T  0.589
1997 Gu Y, Kumar K, Lin Z, Read I, Zimmt MB, Waldeck DH. Studies into the character of electronic coupling in electron transfer reactions Journal of Photochemistry and Photobiology a: Chemistry. 105: 189-196. DOI: 10.1016/S1010-6030(96)04548-0  0.553
1996 Kumar K, Lin Z, Waldeck DH, Zimmt MB. Electronic coupling in C-clamp-shaped molecules: Solvent-mediated superexchange pathways Journal of the American Chemical Society. 118: 243-244. DOI: 10.1021/Ja952999+  0.584
1995 Kumar K, Tepper RJ, Zeng Y, Zimmt MB. Syntheses of rigid and semirigid molecules for investigations of photoinduced electron transfer reactions Journal of Organic Chemistry. 60: 4051-4066. DOI: 10.1021/Jo00118A023  0.584
1995 Cave RJ, Newton MD, Kumar K, Zimmt MB. Theoretical study of solvent effects on the electronic coupling matrix element in rigidly linked donor-acceptor systems Journal of Physical Chemistry. 99: 17501-17504. DOI: 10.1021/J100049A006  0.582
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