Harry F. Noller - Related publications

University of California, Santa Cruz, Santa Cruz, CA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Xu D, Wang Y. smFRET study of rRNA dimerization at the peptidyl transfer center. Biophysical Chemistry. 277: 106657. PMID 34303893 DOI: 10.1016/j.bpc.2021.106657   
2021 Masuda I, Hwang JY, Christian T, Maharjan S, Mohammad F, Gamper H, Buskirk AR, Hou YM. Loss of -methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression. Elife. 10. PMID 34382933 DOI: 10.7554/eLife.70619   
2021 Pandey KK, Madhry D, Ravi Kumar YS, Malvankar S, Sapra L, Srivastava RK, Bhattacharyya S, Verma B. Regulatory roles of tRNA-derived RNA fragments in human pathophysiology. Molecular Therapy. Nucleic Acids. 26: 161-173. PMID 34513302 DOI: 10.1016/j.omtn.2021.06.023   
2021 Demo G, Gamper HB, Loveland AB, Masuda I, Carbone CE, Svidritskiy E, Hou YM, Korostelev AA. Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nature Communications. 12: 4644. PMID 34330903 DOI: 10.1038/s41467-021-24911-1   
2021 Zhang W, Pan T. Quantitative probing of glycosylated queuosine modifications in tRNA. Methods in Enzymology. 658: 73-82. PMID 34517960 DOI: 10.1016/bs.mie.2021.06.003   
2021 Gamper H, Mao Y, Masuda I, McGuigan H, Blaha G, Wang Y, Xu S, Hou YM. Twice exploration of tRNA +1 frameshifting in an elongation cycle of protein synthesis. Nucleic Acids Research. PMID 34417618 DOI: 10.1093/nar/gkab734   
2021 Liu YT, Strugatsky D, Liu W, Zhou ZH. Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150. Nature Communications. 12: 5513. PMID 34535641 DOI: 10.1038/s41467-021-25791-1   
2021 Ma J, Han H, Huang Y, Yang C, Zheng S, Cai T, Bi J, Huang X, Liu R, Huang L, Luo Y, Li W, Lin S. METTL1/WDR4 mediated mG tRNA modifications and mG codon usage promote mRNA translation and lung cancer progression. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 34371184 DOI: 10.1016/j.ymthe.2021.08.005   
2021 Ju Y, Han L, Chen B, Luo Z, Gu Q, Xu J, Yang XL, Schimmel P, Zhou H. X-shaped structure of bacterial heterotetrameric tRNA synthetase suggests cryptic prokaryote functions and a rationale for synthetase classifications. Nucleic Acids Research. PMID 34390350 DOI: 10.1093/nar/gkab707   
2021 Chan PP, Lin BY, Mak AJ, Lowe TM. tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. Nucleic Acids Research. PMID 34417604 DOI: 10.1093/nar/gkab688   
2021 Yusupova G, Yusupov M. A Path to the Atomic-Resolution Structures of Prokaryotic and Eukaryotic Ribosomes. Biochemistry. Biokhimiia. 86: 926-941. PMID 34488570 DOI: 10.1134/S0006297921080046   
2021 Yan S, Lyu B, Tang X, Lu H, Tang J, Meng R, Cai B, Yang F. Complete mitochondrial genome of nipa palm hispid beetle Maulik (Coleoptera: Chrysomelidae: Cassidinae). Mitochondrial Dna. Part B, Resources. 6: 2652-2653. PMID 34435108 DOI: 10.1080/23802359.2021.1934172   
2021 Aslam M, Huang X, Yan M, She Z, Lu X, Fakher B, Chen Y, Li G, Qin Y. TRM61 is essential for Arabidopsis embryo and endosperm development. Plant Reproduction. PMID 34406456 DOI: 10.1007/s00497-021-00428-x   
2021 Warren JM, Salinas-Giegé T, Triant DA, Taylor DR, Drouard L, Sloan DB. Rapid shifts in mitochondrial tRNA import in a plant lineage with extensive mitochondrial tRNA gene loss. Molecular Biology and Evolution. PMID 34436590 DOI: 10.1093/molbev/msab255   
2021 Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S. Bacterial translation machinery for deliberate mistranslation of the genetic code. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34413202 DOI: 10.1073/pnas.2110797118   
2021 Zhou Y, Hu J, Liu L, Yan M, Zhang Q, Song X, Lin Y, Zhu D, Wei Y, Fu Z, Hu L, Chen Y, Li X. Gly-tRF enhances LCSC-like properties and promotes HCC cells migration by targeting NDFIP2. Cancer Cell International. 21: 502. PMID 34537070 DOI: 10.1186/s12935-021-02102-8   
2021 Paris Z, Svobodová M, Kachale A, Horáková E, Nenarokova A, Lukeš J. A mitochondrial cytidine deaminase is responsible for C to U editing of tRNA to decode the UGA codon in . Rna Biology. 1-9. PMID 34224320 DOI: 10.1080/15476286.2021.1940445   
2021 Bao C, Ermolenko DN. Ribosome as a Translocase and Helicase. Biochemistry. Biokhimiia. 86: 992-1002. PMID 34488575 DOI: 10.1134/S0006297921080095   
2021 Teramoto T, Koyasu T, Adachi N, Kawasaki M, Moriya T, Numata T, Senda T, Kakuta Y. Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis. The Journal of Biological Chemistry. 101028. PMID 34339732 DOI: 10.1016/j.jbc.2021.101028   
2021 He Q, Song X, Ma H, Yin Y. The complete mitochondrial genome of (Motschulsky) (Coleoptera: Chrysomelidae). Mitochondrial Dna. Part B, Resources. 6: 2363-2365. PMID 34345697 DOI: 10.1080/23802359.2021.1951138   
2021 Lipońska A, Yap MF. Hibernation-Promoting Factor Sequesters Staphylococcus aureus Ribosomes to Antagonize RNase R-Mediated Nucleolytic Degradation. Mbio. e0033421. PMID 34253058 DOI: 10.1128/mBio.00334-21   
2021 Monroe JG, Smith TJ, Koutmou KS. Investigating the consequences of mRNA modifications on protein synthesis using in vitro translation assays. Methods in Enzymology. 658: 379-406. PMID 34517955 DOI: 10.1016/bs.mie.2021.06.011   
2021 GeZi G, Liu R, Du D, Wu N, Bao N, Fan L, Morigen M. YfiF, an unknown protein, affects initiation timing of chromosome replication in Escherichia coli. Journal of Basic Microbiology. PMID 34486756 DOI: 10.1002/jobm.202100265   
2021 Pellegrino S, Terrosu S, Yusupova G, Yusupov M. Inhibition of the Eukaryotic 80S Ribosome as a Potential Anticancer Therapy: A Structural Perspective. Cancers. 13. PMID 34503202 DOI: 10.3390/cancers13174392   
2021 Bou-Nader C, Muecksch F, Brown JB, Gordon JM, York A, Peng C, Ghirlando R, Summers MF, Bieniasz PD, Zhang J. HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization. Cell Host & Microbe. PMID 34384537 DOI: 10.1016/j.chom.2021.07.006   
2021 Gay DM, Lund AH, Jansson MD. Translational control through ribosome heterogeneity and functional specialization. Trends in Biochemical Sciences. PMID 34312084 DOI: 10.1016/j.tibs.2021.07.001   
2021 Tharp JM, Walker JA, Söll D, Schepartz A. Initiating protein synthesis with noncanonical monomers in vitro and in vivo. Methods in Enzymology. 656: 495-519. PMID 34325796 DOI: 10.1016/bs.mie.2021.05.002   
2021 Dunkelmann DL, Oehm SB, Beattie AT, Chin JW. A 68-codon genetic code to incorporate four distinct non-canonical amino acids enabled by automated orthogonal mRNA design. Nature Chemistry. PMID 34426682 DOI: 10.1038/s41557-021-00764-5   
2021 Liu Z, Kim HK, Xu J, Jing Y, Kay MA. The 3'tsRNAs are aminoacylated: Implications for their biogenesis. Plos Genetics. 17: e1009675. PMID 34324497 DOI: 10.1371/journal.pgen.1009675   
2021 Orellana EA, Liu Q, Yankova E, Pirouz M, De Braekeleer E, Zhang W, Lim J, Aspris D, Sendinc E, Garyfallos DA, Gu M, Ali R, Gutierrez A, Mikutis S, Bernardes GJL, et al. METTL1-mediated mG modification of Arg-TCT tRNA drives oncogenic transformation. Molecular Cell. PMID 34352207 DOI: 10.1016/j.molcel.2021.06.031   
2021 Takada H, Crowe-McAuliffe C, Polte C, Sidorova ZY, Murina V, Atkinson GC, Konevega AL, Ignatova Z, Wilson DN, Hauryliuk V. RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system. Nucleic Acids Research. PMID 34255840 DOI: 10.1093/nar/gkab589   
2021 Cruz J, Lemos B. Post-transcriptional diversity in riboproteins and RNAs in aging and cancer. Seminars in Cancer Biology. PMID 34474152 DOI: 10.1016/j.semcancer.2021.08.012   
2021 Auparakkitanon S, Wilairat P. Universal scanning-free initiation of eukaryote protein translation-a new normal. Biomolecular Concepts. 12: 129-131. PMID 34496168 DOI: 10.1515/bmc-2021-0014   
2021 Santamaría-Gómez J, Rubio MÁ, López-Igual R, Romero-Losada AB, Delgado-Chaves FM, Bru-Martínez R, Romero-Campero FJ, Herrero A, Ibba M, Ochoa de Alda JAG, Luque I. Role of a cryptic tRNA gene operon in survival under translational stress. Nucleic Acids Research. PMID 34379789 DOI: 10.1093/nar/gkab661   
2021 Bakari-Soale M, Ikenga NJ, Scheibe M, Butter F, Jones NG, Kramer S, Engstler M. The nucleolar DExD/H protein Hel66 is involved in ribosome biogenesis in Trypanosoma brucei. Scientific Reports. 11: 18325. PMID 34526538 DOI: 10.1038/s41598-021-97020-0   
2021 Kumar N, Sharma S, Kaushal PS. Protein synthesis in Mycobacterium tuberculosis as a potential target for therapeutic interventions. Molecular Aspects of Medicine. 101002. PMID 34344520 DOI: 10.1016/j.mam.2021.101002   
2021 Padmanabhan PK, Ferreira GR, Zghidi-Abouzid O, Oliveira C, Dumas C, Mariz FC, Papadopoulou B. Genetic depletion of the RNA helicase DDX3 leads to impaired elongation of translating ribosomes triggering co-translational quality control of newly synthesized polypeptides. Nucleic Acids Research. PMID 34358325 DOI: 10.1093/nar/gkab667   
2021 Mohanty BK, Kushner SR. Inactivation of RNase P in Escherichia coli significantly changes post-transcriptional RNA metabolism. Molecular Microbiology. PMID 34486768 DOI: 10.1111/mmi.14808   
2021 Shen K, Zhang H, Feng S, Wang C, Xu S. The complete mitochondrial genome of (Pallas, 1814) from Zhoushan archipelago. Mitochondrial Dna. Part B, Resources. 6: 2622-2623. PMID 34409159 DOI: 10.1080/23802359.2021.1962763   
2021 Dai Z, Liu H, Liao J, Huang C, Ren X, Zhu W, Zhu S, Peng B, Li S, Lai J, Liang L, Xu L, Peng S, Lin S, Kuang M. N-Methylguanosine tRNA modification enhances oncogenic mRNA translation and promotes intrahepatic cholangiocarcinoma progression. Molecular Cell. PMID 34352206 DOI: 10.1016/j.molcel.2021.07.003   
2021 Horikoshi T, Noguchi H, Umehara T, Mutsuro-Aoki H, Kurihara R, Noguchi R, Hashimoto T, Watanabe Y, Ando T, Kamata K, Park SY, Tamura K. Crystal structure of Nanoarchaeum equitans tyrosyl-tRNA synthetase and its aminoacylation activity toward tRNA with an extra guanosine residue at the 5'-terminus. Biochemical and Biophysical Research Communications. 575: 90-95. PMID 34461441 DOI: 10.1016/j.bbrc.2021.08.070   
2021 Rollins MG, Shasmal M, Meade N, Astar H, Shen PS, Walsh D. Negative charge in the RACK1 loop broadens the translational capacity of the human ribosome. Cell Reports. 36: 109663. PMID 34496247 DOI: 10.1016/j.celrep.2021.109663   
2021 Helman G, Mendes MI, Nicita F, Darbelli L, Sherbini O, Moore T, Derksen A, Amy Pizzino, Carrozzo R, Torraco A, Catteruccia M, Aiello C, Goffrini P, Figuccia S, Smith DEC, et al. Expanded phenotype of AARS1-related white matter disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 34446925 DOI: 10.1038/s41436-021-01286-8   
2021 Lawson MR, Lessen LN, Wang J, Prabhakar A, Corsepius NC, Green R, Puglisi JD. Mechanisms that ensure speed and fidelity in eukaryotic translation termination. Science (New York, N.Y.). 373: 876-882. PMID 34413231 DOI: 10.1126/science.abi7801   
2021 Liu K, Sun Q. Intragenic tRNA-promoted R-loops orchestrate transcription interference for plant oxidative stress responses. The Plant Cell. PMID 34463741 DOI: 10.1093/plcell/koab220   
2021 Yang H, Ma X. The complete mitochondrial genome of Dahl 1955 (Siluriformes, Pseudopimelodidae) and its phylogenetic position within Pseudopimelodidae. Mitochondrial Dna. Part B, Resources. 6: 2206-2208. PMID 34377792 DOI: 10.1080/23802359.2021.1945974   
2021 Marathe IA, Lai SM, Zahurancik WJ, Poirier MG, Wysocki VH, Gopalan V. Protein cofactors and substrate influence Mg2+-dependent structural changes in the catalytic RNA of archaeal RNase P. Nucleic Acids Research. PMID 34387688 DOI: 10.1093/nar/gkab655   
2021 Guo X, Dong X, Yang M, Gao S, Wang Y. Mitochondrial genome of (McLachlan, 1872) (Plecoptera: Perlodidae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2433-2435. PMID 34350358 DOI: 10.1080/23802359.2021.1955764   
2021 Kim Y, Eggers C, Shvetsova E, Kleemann L, Sin O, Leidel SA. Analysis of codon-specific translation by ribosome profiling. Methods in Enzymology. 658: 191-223. PMID 34517947 DOI: 10.1016/bs.mie.2021.06.025   
2021 Hao X, Zhao J, Hao R, Zhao Y, Xiangqun Y. Complete mitochondrial genome of the Small-Branded Swift: (Lepidoptera, Hesperiidae). Mitochondrial Dna. Part B, Resources. 6: 1599-1600. PMID 34027065 DOI: 10.1080/23802359.2021.1914523