Sidney A. Bernhard - Related publications

Affiliations: 
University of Oregon, Eugene, OR, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, König G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham G. Comparative performance of PETase as a function of reaction conditions, substrate properties, and product accumulation. Chemsuschem. PMID 34587366 DOI: 10.1002/cssc.202101932   
2021 Jia Q, Zeng H, Li H, Xiao N, Tang J, Gao S, Zhang J, Xie W. The C-terminal loop of guanosine deaminase is essential to catalysis. Chemical Communications (Cambridge, England). PMID 34477187 DOI: 10.1039/d1cc03042f   
2021 Wang Y, Hanrahan G, Azar FA, Mittermaier A. Binding interactions in a kinase active site modulate background ATP hydrolysis. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140720. PMID 34597835 DOI: 10.1016/j.bbapap.2021.140720   
2021 Li Q, Pan Y, Li H, Lenertz M, Reed K, Jordahl D, Bjerke T, Ugrinov A, Chen B, Yang Z. Cascade/Parallel Biocatalysis via Multi-enzyme Encapsulation on Metal-Organic Materials for Rapid and Sustainable Biomass Degradation. Acs Applied Materials & Interfaces. PMID 34478257 DOI: 10.1021/acsami.1c12209   
2021 Lin P, Dinh H, Nakata E, Morii T. Conditional dependence of enzyme cascade reaction efficiency on the inter-enzyme distance. Chemical Communications (Cambridge, England). PMID 34622899 DOI: 10.1039/d1cc04162b   
2021 Arif T, Currie MJ, Dobson RCJ, Newson HL, Poonthiyil V, Fairbanks AJ, North RA, Rendle PM. Synthesis of N-acetylmannosamine-6-phosphate derivatives to investigate the mechanism of N-acetylmannosamine-6-phosphate 2-epimerase. Carbohydrate Research. 510: 108445. PMID 34607125 DOI: 10.1016/j.carres.2021.108445   
2021 Wang Y, Mittermaier AK. Characterizing Bi-substrate Enzyme Kinetics at High Resolution by 2D-ITC. Analytical Chemistry. PMID 34514786 DOI: 10.1021/acs.analchem.1c02705   
2021 Kummer MJ, Lee YS, Yuan M, Alkotaini B, Zhao J, Blumenthal E, Minteer SD. Substrate Channeling by a Rationally Designed Fusion Protein in a Biocatalytic Cascade. Jacs Au. 1: 1187-1197. PMID 34467357 DOI: 10.1021/jacsau.1c00180   
2021 Prasher P, Sharma M. Medicinal chemistry of pyrophosphate mimics: A mini review. Drug Development Research. PMID 34506652 DOI: 10.1002/ddr.21877   
2021 Romero-Téllez S, Cruz A, Masgrau L, González-Lafont À, Lluch JM. Accounting for the instantaneous disorder in the enzyme-substrate Michaelis complex to calculate the Gibbs free energy barrier of an enzyme reaction. Physical Chemistry Chemical Physics : Pccp. 23: 13042-13054. PMID 34100037 DOI: 10.1039/d1cp01338f   
2021 Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. The Enzyme Portal: an integrative tool for enzyme information and analysis. The Febs Journal. PMID 34437766 DOI: 10.1111/febs.16168   
2021 Somma V, Calvio C, Rabuffetti M, Rama E, Speranza G, Morelli CF. An overall framework for the E. coli γ-glutamyltransferase-catalyzed transpeptidation reactions. Bioorganic Chemistry. 115: 105217. PMID 34364051 DOI: 10.1016/j.bioorg.2021.105217   
2021 Xu A, Zhang X, Wu S, Xu N, Huang Y, Yan X, Zhou J, Cui Z, Dong W. Pollutant Degrading Enzyme: Catalytic Mechanisms and Their Expanded Applications. Molecules (Basel, Switzerland). 26. PMID 34443339 DOI: 10.3390/molecules26164751   
2021 Heid E, Goldman S, Sankaranarayanan K, Coley CW, Flamm C, Green WH. EHreact: Extended Hasse Diagrams for the Extraction and Scoring of Enzymatic Reaction Templates. Journal of Chemical Information and Modeling. PMID 34587449 DOI: 10.1021/acs.jcim.1c00921   
2021 Kujawa J, Głodek M, Li G, Al-Gharabli S, Knozowska K, Kujawski W. Highly effective enzymes immobilization on ceramics: Requirements for supports and enzymes. The Science of the Total Environment. 801: 149647. PMID 34467928 DOI: 10.1016/j.scitotenv.2021.149647   
2021 Espina G, Atalah J, Blamey JM. Extremophilic Oxidoreductases for the Industry: Five Successful Examples With Promising Projections. Frontiers in Bioengineering and Biotechnology. 9: 710035. PMID 34458243 DOI: 10.3389/fbioe.2021.710035   
2021 Campomizzi CS, Ghanatios GE, Estrada DF. F-NMR reveals substrate specificity of CYP121A1 in Mycobacterium tuberculosis. The Journal of Biological Chemistry. 101287. PMID 34634307 DOI: 10.1016/j.jbc.2021.101287   
2021 Guo J, Wang Y, Gao W, Wang X, Gao X, Man Z, Cai Z, Qing Q. Gene Cloning, Functional Expression, and Characterization of a Novel GH46 Chitosanase from Streptomyces avermitilis (SaCsn46A). Applied Biochemistry and Biotechnology. PMID 34542822 DOI: 10.1007/s12010-021-03687-6   
2021 Becker D, Bharatam PV, Gohlke H. F/G Region Rigidity is Inversely Correlated to Substrate Promiscuity of Human CYP Isoforms Involved in Metabolism. Journal of Chemical Information and Modeling. 61: 4023-4030. PMID 34370479 DOI: 10.1021/acs.jcim.1c00558   
2021 Wu H, Chen Q, Zhang W, Mu W. Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges. Critical Reviews in Food Science and Nutrition. 1-18. PMID 34445912 DOI: 10.1080/10408398.2021.1970508   
2021 Tserendavga B, Ohshima N, Fujita C, Yuzawa K, Ohshima M, Yanaka N, Minamishima YA, Izumi T. Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid. Journal of Biochemistry. PMID 34523685 DOI: 10.1093/jb/mvab091   
2021 Kumar A, Mukhia S, Kumar R. Industrial applications of cold-adapted enzymes: challenges, innovations and future perspective. 3 Biotech. 11: 426. PMID 34567931 DOI: 10.1007/s13205-021-02929-y   
2021 Gentile K, Bhide A, Kauffman J, Ghosh S, Maiti S, Adair J, Lee TH, Sen A. Enzyme aggregation and fragmentation induced by catalysis relevant species. Physical Chemistry Chemical Physics : Pccp. PMID 34516596 DOI: 10.1039/d1cp02966e   
2021 Hindson SA, Bunzel HA, Frank B, Svistunenko DA, Williams C, van der Kamp MW, Mulholland AJ, Pudney CR, Anderson JLR. Rigidifying a Enzyme Increases Activity and Induces a Negative Activation Heat Capacity. Acs Catalysis. 11: 11532-11541. PMID 34557328 DOI: 10.1021/acscatal.1c01776   
2021 Pal S, Plapp BV. The Thr45Gly substitution in yeast alcohol dehydrogenase substantially decreases catalysis, alters pH dependencies, and disrupts the proton relay system. Chemico-Biological Interactions. 349: 109650. PMID 34529977 DOI: 10.1016/j.cbi.2021.109650   
2021 Gabrielli V, Muñoz-García JC, Pergolizzi G, de Andrade P, Khimyak Y, Field RA, Angulo J. Molecular recognition of natural and non-natural substrates by cellodextrin phosphorylase from Ruminiclostridium thermocellum investigated by NMR spectroscopy. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34436794 DOI: 10.1002/chem.202102039   
2021 Currie MJ, Manjunath L, Horne CR, Rendle PM, Subramanian R, Friemann R, Fairbanks AJ, Muscroft-Taylor AC, North RA, Dobson RCJ. N-Acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization. The Journal of Biological Chemistry. 101113. PMID 34437902 DOI: 10.1016/j.jbc.2021.101113   
2021 Bose I, Zhao Y. Selective Hydrolysis of Aryl Esters under Acidic and Neutral Conditions by a Synthetic Aspartic Protease Mimic. Acs Catalysis. 11: 3938-3942. PMID 34422449 DOI: 10.1021/acscatal.1c00371   
2021 Wang Z, Huang X, Liu J, Xiao F, Tian M, Ding S, Shan Y. Screening and heterologous expression of flavone synthase and flavonol synthase to catalyze hesperetin to diosmetin. Biotechnology Letters. PMID 34514540 DOI: 10.1007/s10529-021-03184-0   
2021 Gilboa T, Ogata AF, Walt DR. Single-Molecule Enzymology for Diagnostics: Profiling Alkaline Phosphatase Activity in Clinical Samples. Chembiochem : a European Journal of Chemical Biology. PMID 34375495 DOI: 10.1002/cbic.202100358   
2021 Zhang YX, Yang JW, Wu YY, Hu XQ, Zhang HB. The stability improvement of dextransucrase by artificial extension modification of the V domain of the enzyme. Enzyme and Microbial Technology. 151: 109919. PMID 34649690 DOI: 10.1016/j.enzmictec.2021.109919   
2021 Pareek V, Sha Z, He J, Wingreen NS, Benkovic SJ. Metabolic channeling: predictions, deductions, and evidence. Molecular Cell. 81: 3775-3785. PMID 34547238 DOI: 10.1016/j.molcel.2021.08.030   
2021 Meneghello M, Léger C, Fourmond V. Electrochemical studies of CO2-reducing metalloenzymes. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34506631 DOI: 10.1002/chem.202102702   
2021 Bao C, Wang Y, Xu X, Li D, Chen J, Guan Z, Wang B, Hong M, Zhang J, Wang T, Zhang Q. Reversible immobilization of laccase onto glycopolymer microspheres via protein-carbohydrate interaction for biodegradation of phenolic compounds. Bioresource Technology. 342: 126026. PMID 34598072 DOI: 10.1016/j.biortech.2021.126026   
2021 Besandre RA, Chen Z, Davis I, Zhang J, Ruszczycky MW, Liu A, Liu HW. HygY Is a Twitch Radical SAM Epimerase with Latent Dehydrogenase Activity Revealed upon Mutation of a Single Cysteine Residue. Journal of the American Chemical Society. PMID 34491039 DOI: 10.1021/jacs.1c05727   
2021 Wang Q, Zhang L. Harnessing P450 enzyme for biotechnology and synthetic biology. Chembiochem : a European Journal of Chemical Biology. PMID 34542923 DOI: 10.1002/cbic.202100439   
2021 You S, Zha Z, Li J, Zhang W, Bai Z, Hu Y, Wang X, Chen Y, Chen Z, Wang J, Luo H. Improvement of XYL10C_∆N catalytic performance through loop engineering for lignocellulosic biomass utilization in feed and fuel industries. Biotechnology For Biofuels. 14: 195. PMID 34598723 DOI: 10.1186/s13068-021-02044-3   
2021 Yildiz I. Computational Analysis of the Nicotine Oxidoreductase Mechanism by the ONIOM Method. Acs Omega. 6: 22422-22428. PMID 34497931 DOI: 10.1021/acsomega.1c03357   
2021 Dai L, Chang Z, Yang J, Liu W, Yang Y, Chen CC, Zhang L, Huang JW, Sun Y, Guo RT. Structural investigation of a thermostable 1,2-β-mannobiose phosphorylase from Thermoanaerobacter sp. X-514. Biochemical and Biophysical Research Communications. 579: 54-61. PMID 34587555 DOI: 10.1016/j.bbrc.2021.09.046   
2021 Obst F, Mertz M, Mehner PJ, Beck A, Castiglione K, Richter A, Voit B, Appelhans D. Enzymatic Synthesis of Sialic Acids in Microfluidics to Overcome Cross-Inhibitions and Substrate Supply Limitations. Acs Applied Materials & Interfaces. 13: 49433-49444. PMID 34612033 DOI: 10.1021/acsami.1c12307   
2021 Pang X, Tang C, Guo R, Chen X. Non-cytochrome P450 enzymes involved in the oxidative metabolism of xenobiotics: Focus on the regulation of gene expression and enzyme activity. Pharmacology & Therapeutics. 108020. PMID 34637840 DOI: 10.1016/j.pharmthera.2021.108020   
2021 Abdallah W, Hong X, Banta S, Wheeldon I. Microenvironmental effects can masquerade as substrate channelling in cascade biocatalysis. Current Opinion in Biotechnology. 73: 233-239. PMID 34521036 DOI: 10.1016/j.copbio.2021.08.014   
2021 Bandyopadhyay A, Saxena AK. Structural and ATPase activity analysis of nucleotide binding domain of Rv3870 enzyme of M. tuberculosis ESX-1 system. International Journal of Biological Macromolecules. PMID 34428493 DOI: 10.1016/j.ijbiomac.2021.08.130   
2021 Hong K, Wang L, Johnpaul A, Lv C, Ma C. Key Enzymes Involved in the Synthesis of Hops Phytochemical Compounds: From Structure, Functions to Applications. International Journal of Molecular Sciences. 22. PMID 34502286 DOI: 10.3390/ijms22179373   
2021 McNaughton AD, Bredeweg EL, Manzer J, Zucker J, Munoz Munoz N, Burnet MC, Nakayasu ES, Pomraning KR, Merkley ED, Dai Z, Chrisler WB, Baker SE, St John PC, Kumar N. Bayesian Inference for Integrating Multiomics Datasets with Metabolic Modeling. Acs Synthetic Biology. PMID 34636549 DOI: 10.1021/acssynbio.1c00267   
2021 Zheng M, Li Y, Dong W, Feng S, Zhang Q, Wang W. Computational biotransformation of polyethylene terephthalate by depolymerase: A QM/MM approach. Journal of Hazardous Materials. 423: 127017. PMID 34464862 DOI: 10.1016/j.jhazmat.2021.127017   
2021 Wang L, Sun P, Yang Y, Qiao H, Tian H, Wu D, Yang S, Yuan Q, Wang J. Preparation of ZIF@ADH/NAD-MSN/LDH Core Shell Nanocomposites for the Enhancement of Coenzyme Catalyzed Double Enzyme Cascade. Nanomaterials (Basel, Switzerland). 11. PMID 34578486 DOI: 10.3390/nano11092171   
2021 Gao J, Le S, Thayumanavan S. Enzyme Catalysis in Non-native Environment with Unnatural Selectivity Using Polymeric Nanoreactors. Angewandte Chemie (International Ed. in English). PMID 34510672 DOI: 10.1002/anie.202109477   
2021 Chakraborty K, Dhara S. Conoidecyclics A-C from marine macroalga Turbinaria conoides: Newly described natural macrolides with prospective bioactive properties. Phytochemistry. 191: 112909. PMID 34419665 DOI: 10.1016/j.phytochem.2021.112909   
2021 Park W, Son HF, Lee D, Kim IK, Kim KJ. Crystal Structure and Functional Characterization of the Bifunctional -(5'-Phosphoribosyl)anthranilate Isomerase-indole-3-glycerol-phosphate Synthase from . Journal of Agricultural and Food Chemistry. PMID 34657425 DOI: 10.1021/acs.jafc.1c05132