| Year |
Citation |
Score |
| 2023 |
De Belly H, Yan S, Borja da Rocha H, Ichbiah S, Town JP, Zager PJ, Estrada DC, Meyer K, Turlier H, Bustamante C, Weiner OD. Cell protrusions and contractions generate long-range membrane tension propagation. Cell. PMID 37311454 DOI: 10.1016/j.cell.2023.05.014 |
0.69 |
|
| 2023 |
Shaw A, Craig JM, Amiri H, Kim J, Upton HE, Pimentel SC, Huang JR, Marqusee S, Gundlach JH, Collins K, Bustamante CJ. Secondary Structure Detection Through Direct Nanopore RNA Sequencing. Biorxiv : the Preprint Server For Biology. PMID 37066208 DOI: 10.1101/2023.04.05.535757 |
0.718 |
|
| 2022 |
Raspadori A, Vignali V, Murello A, Giachin G, Samorì B, Tanaka M, Bustamante C, Zuccheri G, Legname G. Evidence of Orientation-Dependent Early States of Prion Protein Misfolded Structures from Single Molecule Force Spectroscopy. Biology. 11. PMID 36138837 DOI: 10.3390/biology11091358 |
0.548 |
|
| 2022 |
Bustamante C, Yan S. The Development of Single Molecule Force Spectroscopy: From Polymer Biophysics to Molecular Machines. Quarterly Reviews of Biophysics. 1-105. PMID 35916314 DOI: 10.1017/S0033583522000087 |
0.699 |
|
| 2022 |
Cada AK, Pavlin MR, Castillo JP, Tong AB, Larsen KP, Ren X, Yokom AL, Tsai FC, Shiah JV, Bassereau PM, Bustamante CJ, Hurley JH. Friction-driven membrane scission by the human ESCRT-III proteins CHMP1B and IST1. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204536119. PMID 35858336 DOI: 10.1073/pnas.2204536119 |
0.435 |
|
| 2021 |
Bustamante CJ, Chemla YR, Liu S, Wang MD. Optical tweezers in single-molecule biophysics. Nature Reviews. Methods Primers. 1. PMID 34849486 DOI: 10.1038/S43586-021-00021-6 |
0.621 |
|
| 2020 |
Chen Z, Shaw A, Wilson H, Woringer M, Darzacq X, Marqusee S, Wang Q, Bustamante C. Single-molecule diffusometry reveals no catalysis-induced diffusion enhancement of alkaline phosphatase as proposed by FCS experiments. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817484 DOI: 10.1073/Pnas.2006900117 |
0.721 |
|
| 2020 |
Bustamante C, Alexander L, Maciuba K, Kaiser CM. Single-Molecule Studies of Protein Folding with Optical Tweezers. Annual Review of Biochemistry. 89: 443-470. PMID 32569525 DOI: 10.1146/Annurev-Biochem-013118-111442 |
0.802 |
|
| 2020 |
Wang F, Hao Y, Li Q, Li J, Zhang H, Zhang X, Wang L, Bustamante C, Fan C. Programming PAM antennae for efficient CRISPR-Cas9 DNA editing. Science Advances. 6: eaay9948. PMID 32494703 DOI: 10.1126/Sciadv.Aay9948 |
0.335 |
|
| 2020 |
Chen Z, Gabizon R, Yao T, Bustamante C. Single-Molecule Navigation of the Nucleosomal Transcription Landscape Biophysical Journal. 118: 542a. DOI: 10.1016/J.Bpj.2019.11.2968 |
0.3 |
|
| 2019 |
Fukuda S, Yan S, Komi Y, Sun M, Gabizon R, Bustamante C. The Biogenesis of SRP RNA Is Modulated by an RNA Folding Intermediate Attained during Transcription. Molecular Cell. PMID 31706702 DOI: 10.1016/J.Molcel.2019.10.006 |
0.725 |
|
| 2019 |
Desai VP, Frank F, Lee A, Righini M, Lancaster L, Noller HF, Tinoco I, Bustamante C. Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs. Molecular Cell. PMID 31471187 DOI: 10.1016/J.Molcel.2019.07.024 |
0.681 |
|
| 2019 |
Feng B, Sosa RP, Mårtensson AKF, Jiang K, Tong A, Dorfman KD, Takahashi M, Lincoln P, Bustamante CJ, Westerlund F, Nordén B. Hydrophobic catalysis and a potential biological role of DNA unstacking induced by environment effects. Proceedings of the National Academy of Sciences of the United States of America. PMID 31413203 DOI: 10.1073/Pnas.1909122116 |
0.399 |
|
| 2019 |
Alexander LM, Goldman DH, Wee LM, Bustamante C. Non-equilibrium dynamics of a nascent polypeptide during translation suppress its misfolding. Nature Communications. 10: 2709. PMID 31221966 DOI: 10.1038/S41467-019-10647-6 |
0.314 |
|
| 2019 |
Tafoya S, Large SJ, Liu S, Bustamante C, Sivak DA. Using a system's equilibrium behavior to reduce its energy dissipation in nonequilibrium processes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30867295 DOI: 10.1073/Pnas.1817778116 |
0.319 |
|
| 2019 |
Zhang H, Wang Y, Zhang H, Liu X, Lee A, Huang Q, Wang F, Chao J, Liu H, Li J, Shi J, Zuo X, Wang L, Wang L, Cao X, ... Bustamante C, et al. Programming chain-growth copolymerization of DNA hairpin tiles for in-vitro hierarchical supramolecular organization. Nature Communications. 10: 1006. PMID 30824698 DOI: 10.1038/S41467-019-09004-4 |
0.386 |
|
| 2018 |
Schöneberg J, Pavlin MR, Yan S, Righini M, Lee IH, Carlson LA, Bahrami AH, Goldman DH, Ren X, Hummer G, Bustamante C, Hurley JH. ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. Science (New York, N.Y.). 362: 1423-1428. PMID 30573630 DOI: 10.1126/Science.Aat1839 |
0.76 |
|
| 2018 |
Gabizon R, Lee A, Vahedian-Movahed H, Ebright RH, Bustamante CJ. Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates. Nature Communications. 9: 2930. PMID 30050038 DOI: 10.1038/S41467-018-05344-9 |
0.355 |
|
| 2018 |
Tafoya S, Liu S, Castillo JP, Atz R, Morais MC, Grimes S, Jardine PJ, Bustamante C. Molecular switch-like regulation enables global subunit coordination in a viral ring ATPase. Proceedings of the National Academy of Sciences of the United States of America. PMID 30012596 DOI: 10.1073/Pnas.1802736115 |
0.384 |
|
| 2018 |
Tafoya S, Bustamante C. Molecular switch-like regulation in motor proteins. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29735735 DOI: 10.1098/Rstb.2017.0181 |
0.342 |
|
| 2018 |
Liu N, Chistol G, Cui Y, Bustamante C. Mechanochemical coupling and bi-phasic force-velocity dependence in the ultra-fast ring ATPase SpoIIIE. Elife. 7. PMID 29504934 DOI: 10.7554/Elife.32354 |
0.817 |
|
| 2018 |
Righini M, Lee A, Cañari-Chumpitaz C, Lionberger T, Gabizon R, Coello Y, Tinoco I, Bustamante C. Full molecular trajectories of RNA polymerase at single base-pair resolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29351994 DOI: 10.1073/Pnas.1719906115 |
0.669 |
|
| 2018 |
Llorente-Garcia I, Lenn T, Erhardt H, Harriman OL, Liu LN, Robson A, Chiu SW, Matthews S, Willis NJ, Bray CD, Lee SH, Shin JY, Bustamante C, Liphardt J, Friedrich T, et al. Corrigendum to "Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation" [Biochim. Biophys. Acta 1837(6) (2014) 811-824 DOI: 10.1016/j.bbabio.2014.01.020]. Biochimica Et Biophysica Acta. 1859: 164. PMID 29175561 DOI: 10.1016/J.Bbabio.2017.11.005 |
0.747 |
|
| 2018 |
Liu N, Chistol G, Cui Y, Bustamante C. Author response: Mechanochemical coupling and bi-phasic force-velocity dependence in the ultra-fast ring ATPase SpoIIIE Elife. DOI: 10.7554/Elife.32354.015 |
0.775 |
|
| 2018 |
Castillo JP, Tong A, Tafoya S, Jardine P, Bustamante C. Challenging a DNA Packaging Motor with a Modified Substrate Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.543 |
0.362 |
|
| 2018 |
Desai VP, Frank F, Righini M, Lee A, Tinoco I, Bustamante CJ. Simultaneous Force and Fluorescence Measurements on Single Ribosomes Demonstrate that mRNA Secondary Structures do not Restrict EF-G Catalyzed Translocation Biophysical Journal. 114: 592a. DOI: 10.1016/J.Bpj.2017.11.3236 |
0.649 |
|
| 2018 |
Schöneberg J, Yan S, Bahrami A, Righini M, Lee I, Remec Pavlin M, Carlson L, Goldman D, Hummer G, Bustamante C, Hurley J. ESCRT Membrane Scission Revealed by Optical Tweezers Biophysical Journal. 114: 554a. DOI: 10.1016/J.Bpj.2017.11.3028 |
0.741 |
|
| 2018 |
Fukuda S, Yan S, Sun M, Bustamante CJ. Alternative SRP RNA Folded States Accessible Co-transcriptionally can Modulate SRP Protein-Targeting Activity Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1198 |
0.712 |
|
| 2017 |
San Martín Á, Rodriguez-Aliaga P, Molina JA, Martin A, Bustamante C, Baez M. Knots can impair protein degradation by ATP-dependent proteases. Proceedings of the National Academy of Sciences of the United States of America. PMID 28847957 DOI: 10.1073/Pnas.1705916114 |
0.302 |
|
| 2017 |
Herrera-Asmat O, Lubkowska L, Kashlev M, Bustamante CJ, Guerra DG, Kireeva ML. Production and characterization of a highly pure RNA polymerase holoenzyme from Mycobacterium tuberculosis. Protein Expression and Purification. PMID 28323168 DOI: 10.1016/J.Pep.2017.03.013 |
0.342 |
|
| 2017 |
Liu S, Tafoya S, Bustamante C. Deciphering the Molecular Mechanism of the Bacteriophage φ29 DNA Packaging Motor. Methods in Molecular Biology (Clifton, N.J.). 1486: 343-355. PMID 27844435 DOI: 10.1007/978-1-4939-6421-5_13 |
0.414 |
|
| 2017 |
Alexander L, Goldman D, Tinoco I, Bustamante CJ. The Ribosome Alters the Folding of a Multidomain Nascent Protein Biophysical Journal. 112: 40a-41a. DOI: 10.1016/J.Bpj.2016.11.257 |
0.651 |
|
| 2017 |
Cabanas-Danés J, Driessen RPC, Tafoya S, Alexander L, Bustamante C, Sitters G, Candelli A. Quicker than Quick: Correlative Optical Tweezers-Fluorescence Microscopy (CTFM) for the Study of Short-Lived Metabolic Processes Biophysical Journal. 112: 299. DOI: 10.1016/J.Bpj.2016.11.1620 |
0.355 |
|
| 2017 |
Lee A, Gabizon R, Vahedian-Mohaved H, Ebright RH, Bustamante C. RNA Polymerase Translocation in Processive Transcription Elongation and Pausing: Dynamics, Force-Dependence, and Modulation by Sequence-Specific RNAP-DNA Interactions Biophysical Journal. 112: 211a. DOI: 10.1016/J.Bpj.2016.11.1163 |
0.385 |
|
| 2016 |
Rodriguez-Aliaga P, Ramirez L, Kim F, Bustamante C, Martin A. Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP. Nature Structural & Molecular Biology. PMID 27669037 DOI: 10.1038/Nsmb.3298 |
0.33 |
|
| 2016 |
Rodriguez-Aliaga P, Ramirez L, Kim F, Bustamante C, Martin A. Key Roles of Translocating Loops in the Mechanochemical Coupling and Power Production of a AAA+ Protease Machine Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2109 |
0.374 |
|
| 2015 |
Liu N, Chistol G, Bustamante C. Two-subunit DNA escort mechanism and inactive subunit bypass in an ultra-fast ring ATPase. Elife. 4. PMID 26452092 DOI: 10.7554/Elife.09224 |
0.819 |
|
| 2015 |
Yen Shin J, Lopez-Garrido J, Lee SH, Diaz-Celis C, Fleming T, Bustamante C, Pogliano K. Visualization and functional dissection of coaxial paired SpoIIIE channels across the sporulation septum. Elife. 4: e06474. PMID 25950186 DOI: 10.7554/Elife.06474 |
0.359 |
|
| 2015 |
Doniselli N, Rodriguez-Aliaga P, Amidani D, Bardales JA, Bustamante C, Guerra DG, Rivetti C. New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase-promoter complex. Nucleic Acids Research. 43: 5249-62. PMID 25916853 DOI: 10.1093/Nar/Gkv391 |
0.375 |
|
| 2015 |
Goldman DH, Kaiser CM, Milin A, Righini M, Tinoco I, Bustamante C. Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo. Science (New York, N.Y.). 348: 457-60. PMID 25908824 DOI: 10.1126/Science.1261909 |
0.769 |
|
| 2015 |
Yan S, Wen JD, Bustamante C, Tinoco I. Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways. Cell. 160: 870-81. PMID 25703095 DOI: 10.1016/J.Cell.2015.02.003 |
0.78 |
|
| 2015 |
Mejia YX, Nudler E, Bustamante C. Trigger loop folding determines transcription rate of Escherichia coli's RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 112: 743-8. PMID 25552559 DOI: 10.1073/Pnas.1421067112 |
0.803 |
|
| 2015 |
Riedel C, Gabizon R, Wilson CA, Hamadani K, Tsekouras K, Marqusee S, Pressé S, Bustamante C. The heat released during catalytic turnover enhances the diffusion of an enzyme. Nature. 517: 227-30. PMID 25487146 DOI: 10.1038/Nature14043 |
0.685 |
|
| 2015 |
Liu N, Chistol G, Bustamante C. Author response: Two-subunit DNA escort mechanism and inactive subunit bypass in an ultra-fast ring ATPase Elife. DOI: 10.7554/Elife.09224.017 |
0.793 |
|
| 2015 |
Shah A, Goldman D, Alexander L, Bustamante C. Elucidating the Folding Pathways of Calcium-Binding Proteins Biophysical Journal. 108: 515a. DOI: 10.1016/J.Bpj.2014.11.2822 |
0.358 |
|
| 2015 |
Rodriguez-Aliaga P, Ramirez LE, Kim F, Martin A, Bustamante C. Role of Pore Loops in the Mechanism of Polypeptide Translocation by a AAA+ Protease Machine Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2750 |
0.319 |
|
| 2014 |
Rosenbloom AB, Lee SH, To M, Lee A, Shin JY, Bustamante C. Optimized two-color super resolution imaging of Drp1 during mitochondrial fission with a slow-switching Dronpa variant. Proceedings of the National Academy of Sciences of the United States of America. 111: 13093-8. PMID 25149858 DOI: 10.1073/Pnas.1320044111 |
0.789 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Fredrik K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome. Elife. 3: e03406. PMID 25114092 DOI: 10.7554/Elife.03406 |
0.81 |
|
| 2014 |
Onoa B, Schneider AR, Brooks MD, Grob P, Nogales E, Geissler PL, Niyogi KK, Bustamante C. Atomic force microscopy of photosystem II and its unit cell clustering quantitatively delineate the mesoscale variability in Arabidopsis thylakoids. Plos One. 9: e101470. PMID 25007326 DOI: 10.1371/Journal.Pone.0101470 |
0.309 |
|
| 2014 |
Pressé S, Peterson J, Lee J, Elms P, MacCallum JL, Marqusee S, Bustamante C, Dill K. Single molecule conformational memory extraction: p5ab RNA hairpin. The Journal of Physical Chemistry. B. 118: 6597-603. PMID 24898871 DOI: 10.1021/Jp500611F |
0.59 |
|
| 2014 |
Bustamante CJ, Kaiser CM, Maillard RA, Goldman DH, Wilson CA. Mechanisms of cellular proteostasis: insights from single-molecule approaches. Annual Review of Biophysics. 43: 119-40. PMID 24895851 DOI: 10.1146/Annurev-Biophys-051013-022811 |
0.742 |
|
| 2014 |
Liu S, Chistol G, Bustamante C. Mechanical operation and intersubunit coordination of ring-shaped molecular motors: insights from single-molecule studies. Biophysical Journal. 106: 1844-58. PMID 24806916 DOI: 10.1016/J.Bpj.2014.03.029 |
0.779 |
|
| 2014 |
Liu S, Chistol G, Hetherington CL, Tafoya S, Aathavan K, Schnitzbauer J, Grimes S, Jardine PJ, Bustamante C. A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills. Cell. 157: 702-13. PMID 24766813 DOI: 10.1016/J.Cell.2014.02.034 |
0.801 |
|
| 2014 |
Kim HK, Liu F, Fei J, Bustamante C, Gonzalez RL, Tinoco I. A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation. Proceedings of the National Academy of Sciences of the United States of America. 111: 5538-43. PMID 24706807 DOI: 10.1073/Pnas.1403457111 |
0.64 |
|
| 2014 |
Walter NG, Bustamante C. Introduction to single molecule imaging and mechanics: seeing and touching molecules one at a time. Chemical Reviews. 114: 3069-71. PMID 24666198 DOI: 10.1021/Cr500059W |
0.308 |
|
| 2014 |
Llorente-Garcia I, Lenn T, Erhardt H, Harriman OL, Liu LN, Robson A, Chiu SW, Matthews S, Willis NJ, Bray CD, Lee SH, Shin JY, Bustamante C, Liphardt J, Friedrich T, et al. Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation. Biochimica Et Biophysica Acta. 1837: 811-24. PMID 24513194 DOI: 10.1016/J.Bbabio.2014.01.020 |
0.76 |
|
| 2014 |
Dangkulwanich M, Ishibashi T, Bintu L, Bustamante C. Molecular mechanisms of transcription through single-molecule experiments. Chemical Reviews. 114: 3203-23. PMID 24502198 DOI: 10.1021/Cr400730X |
0.736 |
|
| 2014 |
Moffitt JR, Bustamante C. Extracting signal from noise: kinetic mechanisms from a Michaelis-Menten-like expression for enzymatic fluctuations. The Febs Journal. 281: 498-517. PMID 24428386 DOI: 10.1111/Febs.12545 |
0.651 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Correction: Direct measurement of the mechanical work during translocation by the ribosome Elife. 3. DOI: 10.7554/Elife.04563 |
0.783 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Author response: Direct measurement of the mechanical work during translocation by the ribosome Elife. DOI: 10.7554/Elife.03406.010 |
0.778 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome Elife. 3: 1-12. DOI: 10.7554/eLife.03406 |
0.783 |
|
| 2014 |
Onoa B, Schneider A, Brooks M, Grob P, Nogales E, Geissler P, Niyogi KK, Bustamante CJ. Atomic Force Microscopy and Particle Clustering Reveal Altered Photosystem II Organization in the Suppressor of Quenching 1 Mutant of Arabidopsis Biophysical Journal. 106: 800a. DOI: 10.1016/J.Bpj.2013.11.4384 |
0.316 |
|
| 2014 |
Lee S, Rosenbloom A, Shin J, Bustamante C. Development of a Slow-Switching Dronpa Variant for 2-Color Super Resolution Imaging of Drp1 During Mitochondrial Fission Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.4365 |
0.789 |
|
| 2014 |
Riedel C, Wilson CW, Hamadani K, Tsekouras K, Marqusee S, Presse S, Bustamante C. The Heat Released by a Chemical Reaction Locally Enhanced the Enzyme Diffusion Biophysical Journal. 106: 668a. DOI: 10.1016/J.Bpj.2013.11.3701 |
0.547 |
|
| 2014 |
Tafoya S, Chistol G, Liu S, Jardine P, Grimes S, Bustamante C. Structural Basis for the Mechano-Chemical Coupling and Inter-Subunit Coordination of Ring ATPase Biophysical Journal. 106: 495a. DOI: 10.1016/J.Bpj.2013.11.2769 |
0.781 |
|
| 2014 |
Kim H, Liu F, Fei J, Gonzalez RL, Bustamante C, Tinoco I. An mRNA Downstream Structure Promotes Frameshifting by Destabilizing the Hybrid State and Impeding the EF-G Driven Translocation Process Biophysical Journal. 106: 490a-491a. DOI: 10.1016/J.Bpj.2013.11.2743 |
0.645 |
|
| 2014 |
Leachman SM, Wilson CA, Marqusee S, Bustamante C. Protein-Folding Studies using Hybrid TIRF SmFRET-Magnetic Tweezers Biophysical Journal. 106: 469a-470a. DOI: 10.1016/J.Bpj.2013.11.2657 |
0.732 |
|
| 2014 |
Lee A, Rosenbloom AB, Lee S, Bustamante C. Super-Resolution Imaging of Protein-Protein Interactions by Bimolecular Complementation of Photoactivatable Fluorescent Proteins Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.192 |
0.784 |
|
| 2014 |
Liu N, Chistol G, Bustamante C. Mechanical Characterization of a Fast DNA Motor: SpoIIIE Biophysical Journal. 106: 21a. DOI: 10.1016/J.Bpj.2013.11.172 |
0.827 |
|
| 2014 |
Bustamante C. A Journey Through Cellular Processes: One Molecule at a Time Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1468 |
0.409 |
|
| 2014 |
Sen M, Maillard RA, Nyquist K, Rodriguez-Aliaga P, Pressé S, Martin A, Bustamante C. The ClpXP Protease Employs a Novel Mechanism of Translocation Using a Constant Frequency of Pulling but Different Gears Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1444 |
0.618 |
|
| 2014 |
Yan S, Wen J, Lancaster L, Noller H, Bustamante C, Tinoco I. Deciphering Ribosomal Frameshifting Dynamics Biophysical Journal. 106: 239a. DOI: 10.1016/J.Bpj.2013.11.1400 |
0.788 |
|
| 2014 |
Shin JY, Diaz C, Lopez J, Schnitzbauer J, Pogliano K, Bustamante C. In Vivo Assembly and Arrangement of the DNA Translocase SpoIIIE During Chromosome Segregation and Membrane Fission in B. Subtilis Biophysical Journal. 106: 226a. DOI: 10.1016/J.Bpj.2013.11.1325 |
0.363 |
|
| 2013 |
Strycharska MS, Arias-Palomo E, Lyubimov AY, Erzberger JP, O'Shea VL, Bustamante CJ, Berger JM. Nucleotide and partner-protein control of bacterial replicative helicase structure and function. Molecular Cell. 52: 844-54. PMID 24373746 DOI: 10.1016/J.Molcel.2013.11.016 |
0.385 |
|
| 2013 |
Sen M, Maillard RA, Nyquist K, Rodriguez-Aliaga P, Pressé S, Martin A, Bustamante C. The ClpXP protease unfolds substrates using a constant rate of pulling but different gears. Cell. 155: 636-46. PMID 24243020 DOI: 10.1016/J.Cell.2013.09.022 |
0.615 |
|
| 2013 |
Dangkulwanich M, Ishibashi T, Liu S, Kireeva ML, Lubkowska L, Kashlev M, Bustamante CJ. Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism. Elife. 2: e00971. PMID 24066225 DOI: 10.7554/Elife.00971 |
0.362 |
|
| 2013 |
Liu S, Chistol G, Tafoya S, Grimes S, Jardine PJ, Bustamante C. Feeling the Pressure: Dynamics of Viral DNA Packaging are Controlled by the Confined Genome within the Capsid Biophysical Journal. 104: 382a. DOI: 10.1016/J.Bpj.2012.11.2126 |
0.784 |
|
| 2013 |
Dangkulwanich M, Ishibashi T, Liu S, Kireeva ML, Lubkowska L, Kashlev M, Bustamante C. A Quantitative Kinetic Model of Eukaryotic Transcription Elongation from Single-Molecule Experiments Biophysical Journal. 104: 364a. DOI: 10.1016/J.Bpj.2012.11.2023 |
0.348 |
|
| 2013 |
Kaplan A, Liu T, Wickersham C, Wen J, Lancaster L, Fredrick K, Noller HF, Tinoco I, Bustamante C. Mechanical Force during Translocation by the Ribosome Biophysical Journal. 104: 258a. DOI: 10.1016/J.Bpj.2012.11.1449 |
0.763 |
|
| 2013 |
Leachman SM, Wilson CA, Cervantes B, Ierokomos A, Marqusee S, Bustamante C. A Hybrid Tirf-Magnetic Tweezers Instrument for Studying Force-Induced Conformational Changes in Proteins Biophysical Journal. 104: 211a. DOI: 10.1016/J.Bpj.2012.11.1192 |
0.715 |
|
| 2013 |
Lionberger TA, Coello Y, Bustamante CJ. Positional Imprinting of Optical Traps Corrects for Mechanical Drift in High-Resolution Instruments Biophysical Journal. 104: 210a. DOI: 10.1016/J.Bpj.2012.11.1188 |
0.311 |
|
| 2013 |
Hetherington CL, Karunakaran A, Schnitzbauer J, Jardine P, Grimes S, Bustamante C. DNA Rotation during Viral Packaging Reveals Motor Mechanism and Genome Organization Biophysical Journal. 104: 1a. DOI: 10.1016/J.Bpj.2012.11.021 |
0.789 |
|
| 2012 |
Chistol G, Liu S, Hetherington CL, Moffitt JR, Grimes S, Jardine PJ, Bustamante C. High degree of coordination and division of labor among subunits in a homomeric ring ATPase. Cell. 151: 1017-28. PMID 23178121 DOI: 10.1016/J.Cell.2012.10.031 |
0.795 |
|
| 2012 |
Bintu L, Ishibashi T, Dangkulwanich M, Wu YY, Lubkowska L, Kashlev M, Bustamante C. Nucleosomal elements that control the topography of the barrier to transcription. Cell. 151: 738-49. PMID 23141536 DOI: 10.1016/J.Cell.2012.10.009 |
0.723 |
|
| 2012 |
Elms PJ, Chodera JD, Bustamante CJ, Marqusee S. Limitations of constant-force-feedback experiments. Biophysical Journal. 103: 1490-9. PMID 23062341 DOI: 10.1016/J.Bpj.2012.06.051 |
0.618 |
|
| 2012 |
Lee SH, Shin JY, Lee A, Bustamante C. Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM). Proceedings of the National Academy of Sciences of the United States of America. 109: 17436-41. PMID 23045631 DOI: 10.1073/Pnas.1215175109 |
0.329 |
|
| 2012 |
Bosaeus N, El-Sagheer AH, Brown T, Smith SB, Akerman B, Bustamante C, Nordén B. Tension induces a base-paired overstretched DNA conformation. Proceedings of the National Academy of Sciences of the United States of America. 109: 15179-84. PMID 22949705 DOI: 10.1073/Pnas.1213172109 |
0.407 |
|
| 2012 |
Jagannathan B, Elms PJ, Bustamante C, Marqusee S. Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein. Proceedings of the National Academy of Sciences of the United States of America. 109: 17820-5. PMID 22949695 DOI: 10.1073/Pnas.1201800109 |
0.612 |
|
| 2012 |
Qu X, Lancaster L, Noller HF, Bustamante C, Tinoco I. Ribosomal protein S1 unwinds double-stranded RNA in multiple steps Proceedings of the National Academy of Sciences of the United States of America. 109: 14458-14463. PMID 22908248 DOI: 10.1073/Pnas.1208950109 |
0.658 |
|
| 2012 |
Zamft B, Bintu L, Ishibashi T, Bustamante C. Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases. Proceedings of the National Academy of Sciences of the United States of America. 109: 8948-53. PMID 22615360 DOI: 10.1073/Pnas.1205063109 |
0.72 |
|
| 2012 |
Elms PJ, Chodera JD, Bustamante C, Marqusee S. The molten globule state is unusually deformable under mechanical force. Proceedings of the National Academy of Sciences of the United States of America. 109: 3796-801. PMID 22355138 DOI: 10.1073/Pnas.1115519109 |
0.599 |
|
| 2012 |
Liu S, Chistol G, Hetherington CL, Moffitt JR, Grimes S, Jardine PJ, Bustamante C. Complete Characterization of the Mechanochemical Cycle of a Homomeric Ring ATPase Biophysical Journal. 102: 175a. DOI: 10.1016/J.Bpj.2011.11.948 |
0.803 |
|
| 2012 |
Leachman SM, Wilson CA, Bustamante C, Marqusee S. A Hybrid Tirf-Magnetic Tweezers Instrument for Studying Sub-Nanometer Effects of Force on Proteins Biophysical Journal. 102: 387a. DOI: 10.1016/J.Bpj.2011.11.2118 |
0.734 |
|
| 2012 |
Ishibashi T, Bintu L, Dangkulwanich M, Gloria W, Lubkowska L, Kashlev M, Bustamante C. Dissecting the Nucleosomal Barrier to Transcription Biophysical Journal. 102: 284a. DOI: 10.1016/J.Bpj.2011.11.1572 |
0.715 |
|
| 2012 |
Hetherington CL, Moffitt JR, Jardine PJ, Bustamante C. Viral DNA packaging motors Comprehensive Biophysics. 4: 420-446. DOI: 10.1016/B978-0-12-374920-8.00431-8 |
0.799 |
|
| 2011 |
Kaiser CM, Goldman DH, Chodera JD, Tinoco I, Bustamante C. The ribosome modulates nascent protein folding. Science (New York, N.Y.). 334: 1723-7. PMID 22194581 DOI: 10.1126/Science.1209740 |
0.752 |
|
| 2011 |
Bintu L, Kopaczynska M, Hodges C, Lubkowska L, Kashlev M, Bustamante C. The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes. Nature Structural & Molecular Biology. 18: 1394-9. PMID 22081017 DOI: 10.1038/Nsmb.2164 |
0.716 |
|
| 2011 |
Cheng W, Arunajadai SG, Moffitt JR, Tinoco I, Bustamante C. Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase. Science (New York, N.Y.). 333: 1746-9. PMID 21940894 DOI: 10.1126/Science.1206023 |
0.776 |
|
| 2011 |
Qu X, Wen JD, Lancaster L, Noller HF, Bustamante C, Tinoco I. The ribosome uses two active mechanisms to unwind messenger RNA during translation Nature. 475: 118-121. PMID 21734708 DOI: 10.1038/Nature10126 |
0.669 |
|
| 2011 |
Cecconi C, Shank EA, Marqusee S, Bustamante C. DNA molecular handles for single-molecule protein-folding studies by optical tweezers. Methods in Molecular Biology (Clifton, N.J.). 749: 255-71. PMID 21674378 DOI: 10.1007/978-1-61779-142-0_18 |
0.798 |
|
| 2011 |
Maillard RA, Chistol G, Sen M, Righini M, Tan J, Kaiser CM, Hodges C, Martin A, Bustamante C. ClpX(P) generates mechanical force to unfold and translocate its protein substrates Cell. 145: 459-469. PMID 21529717 DOI: 10.1016/J.Cell.2011.04.010 |
0.805 |
|
| 2011 |
Bustamante C, Cheng W, Mejia YX, Meija YX. Revisiting the central dogma one molecule at a time. Cell. 144: 480-97. PMID 21335233 DOI: 10.1016/J.Cell.2011.01.033 |
0.786 |
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| 2011 |
Sudhanshu B, Mihardja S, Koslover EF, Mehraeen S, Bustamante C, Spakowitz AJ. Tension-dependent structural deformation alters single-molecule transition kinetics Proceedings of the National Academy of Sciences of the United States of America. 108: 1885-1890. PMID 21245354 DOI: 10.1073/Pnas.1010047108 |
0.76 |
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| 2011 |
Bustamante C, Cheng W, Mejia YX. Erratum: Revisiting the central dogma one molecule at a time (Cell (2011) 144 (480-497)) Cell. 145. DOI: 10.1016/J.Cell.2011.02.043 |
0.773 |
|
| 2011 |
Kaiser C, Goldman D, Bustamante C. Single Molecule Analysis of Protein Folding on the Ribosome Biophysical Journal. 100: 28a. DOI: 10.1016/J.Bpj.2010.12.359 |
0.649 |
|
| 2010 |
Zohar H, Hetherington CL, Bustamante C, Muller SJ. Peptide nucleic acids as tools for single-molecule sequence detection and manipulation. Nano Letters. 10: 4697-701. PMID 20923183 DOI: 10.1021/Nl102986V |
0.774 |
|
| 2010 |
Yu J, Cheng W, Bustamante C, Oster G. Coupling translocation with nucleic acid unwinding by NS3 helicase Journal of Molecular Biology. 404: 439-455. PMID 20887735 DOI: 10.1016/J.Jmb.2010.09.047 |
0.379 |
|
| 2010 |
Moffitt JR, Chemla YR, Bustamante C. Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations. Proceedings of the National Academy of Sciences of the United States of America. 107: 15739-44. PMID 20729471 DOI: 10.1073/Pnas.1006997107 |
0.761 |
|
| 2010 |
Huguet JM, Bizarro CV, Forns N, Smith SB, Bustamante C, Ritort F. Single-molecule derivation of salt dependent base-pair free energies in DNA. Proceedings of the National Academy of Sciences of the United States of America. 107: 15431-6. PMID 20716688 DOI: 10.1073/Pnas.1001454107 |
0.353 |
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| 2010 |
Moffitt JR, Chemla YR, Bustamante C. Methods in statistical kinetics. Methods in Enzymology. 475: 221-57. PMID 20627160 DOI: 10.1016/S0076-6879(10)75010-2 |
0.759 |
|
| 2010 |
Fleming TC, Shin JY, Lee SH, Becker E, Huang KC, Bustamante C, Pogliano K. Dynamic SpoIIIE assembly mediates septal membrane fission during Bacillus subtilis sporulation. Genes & Development. 24: 1160-72. PMID 20516200 DOI: 10.1101/Gad.1925210 |
0.305 |
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| 2010 |
Shank EA, Cecconi C, Dill JW, Marqusee S, Bustamante C. The folding cooperativity of a protein is controlled by its chain topology. Nature. 465: 637-40. PMID 20495548 DOI: 10.1038/Nature09021 |
0.771 |
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| 2010 |
Yu J, Moffitt J, Hetherington CL, Bustamante C, Oster G. Mechanochemistry of a viral DNA packaging motor. Journal of Molecular Biology. 400: 186-203. PMID 20452360 DOI: 10.1016/J.Jmb.2010.05.002 |
0.806 |
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| 2010 |
Yu J, Moffitt J, Hetherington C, Bustamante C, Oster G. A Mechanochemical Model of a Viral DNA Packaging Motor Biophysical Journal. 98: 656a. DOI: 10.1016/J.Bpj.2009.12.3596 |
0.818 |
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| 2010 |
Dill J, Bustamante C, Marqusee S. The Unfolding Behavior of RNase H Under Force Biophysical Journal. 98: 617a. DOI: 10.1016/J.Bpj.2009.12.3369 |
0.605 |
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| 2010 |
Kaplan A, Aathavan K, Politzer A, Moffitt J, Chemla YR, Grimes S, Jardine PJ, Anderson DL, Bustamante CJ. Motor-Substrate Interactions in a Ring ATPase Biophysical Journal. 98: 594a. DOI: 10.1016/J.Bpj.2009.12.3233 |
0.822 |
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| 2010 |
Qu X, Wen J, Smith SB, Lancaster L, Noller H, Bustamante C, Tinoco I. Single-Molecule Optical-Tweezers Studies of Ribosome Translation and Unwinding of Messenger RNA Biophysical Journal. 98: 260a. DOI: 10.1016/J.Bpj.2009.12.1417 |
0.679 |
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| 2010 |
Wen J, Lancaster L, Noller H, Bustamante C, Tinoco I. Single-Molecule Study of Programmed Ribosomal Frameshifting Biophysical Journal. 98: 260a. DOI: 10.1016/J.Bpj.2009.12.1416 |
0.659 |
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| 2010 |
Hetherington CL, Karunakaran A, Jardine P, Grimes S, Anderson D, Bustamante C. Bacteriophage phi29 Translocates DNA Along A Left-Handed Helical Path During Packaging Biophysical Journal. 98: 220a-221a. DOI: 10.1016/J.Bpj.2009.12.1189 |
0.816 |
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| 2010 |
Bustamante C, Moffitt JR. Viral dna packaging: One step at a time Springer Series in Chemical Physics. 96: 238-269. |
0.651 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: an introduction. Cold Spring Harbor Protocols. 2009: pdb.top60. PMID 20147062 DOI: 10.1101/Pdb.Top60 |
0.771 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: alignment of instrument components. Cold Spring Harbor Protocols. 2009: pdb.ip76. PMID 20147041 DOI: 10.1101/Pdb.Ip76 |
0.753 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: minimizing the influence of measurement noise. Cold Spring Harbor Protocols. 2009: pdb.ip75. PMID 20147040 DOI: 10.1101/Pdb.Ip75 |
0.752 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: data collection and instrument calibration. Cold Spring Harbor Protocols. 2009: pdb.ip74. PMID 20147039 DOI: 10.1101/Pdb.Ip74 |
0.741 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: instrument design. Cold Spring Harbor Protocols. 2009: pdb.ip73. PMID 20147038 DOI: 10.1101/Pdb.Ip73 |
0.746 |
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| 2009 |
Bustamante C, Chemla YR, Moffitt JR. High-resolution dual-trap optical tweezers with differential detection: managing environmental noise. Cold Spring Harbor Protocols. 2009: pdb.ip72. PMID 20147037 DOI: 10.1101/Pdb.Ip72 |
0.753 |
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| 2009 |
Aathavan K, Politzer AT, Kaplan A, Moffitt JR, Chemla YR, Grimes S, Jardine PJ, Anderson DL, Bustamante C. Substrate interactions and promiscuity in a viral DNA packaging motor. Nature. 461: 669-73. PMID 19794496 DOI: 10.1038/Nature08443 |
0.821 |
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| 2009 |
Ibarra B, Chemla YR, Plyasunov S, Smith SB, Lázaro JM, Salas M, Bustamante C. Proofreading dynamics of a processive DNA polymerase. The Embo Journal. 28: 2794-802. PMID 19661923 DOI: 10.1038/Emboj.2009.219 |
0.665 |
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| 2009 |
Hodges C, Bintu L, Lubkowska L, Kashlev M, Bustamante C. Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. Science (New York, N.Y.). 325: 626-8. PMID 19644123 DOI: 10.1126/Science.1172926 |
0.727 |
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| 2009 |
Chen G, Chang KY, Chou MY, Bustamante C, Tinoco I. Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting Proceedings of the National Academy of Sciences of the United States of America. 106: 12706-12711. PMID 19628688 DOI: 10.1073/Pnas.0905046106 |
0.67 |
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| 2009 |
Galburt EA, Grill SW, Bustamante C. Single molecule transcription elongation Methods. 48: 323-332. PMID 19426807 DOI: 10.1016/J.Ymeth.2009.04.021 |
0.434 |
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| 2009 |
Moffitt JR, Chemla YR, Aathavan K, Grimes S, Jardine PJ, Anderson DL, Bustamante C. Intersubunit coordination in a homomeric ring ATPase. Nature. 457: 446-50. PMID 19129763 DOI: 10.1038/Nature07637 |
0.791 |
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| 2009 |
Mangiarotti L, Cellai S, Ross W, Bustamante C, Rivetti C. Sequence-Dependent Upstream DNA-RNA Polymerase Interactions in the Open Complex with λPR and λPRM Promoters and Implications for the Mechanism of Promoter Interference Journal of Molecular Biology. 385: 748-760. PMID 19061900 DOI: 10.1016/J.Jmb.2008.11.019 |
0.371 |
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| 2009 |
Hetherington CL, Karunakaran A, Schnitzbauer J, Jardine P, Grimes S, Anderson D, Bustamante C. Bacteriophage Phi29 Negatively Twists DNA During Packaging Biophysical Journal. 96: 416a. DOI: 10.1016/J.Bpj.2008.12.2124 |
0.819 |
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| 2009 |
Cheng W, Tinoco I, Bustamante C. Direct Observation of NS3 Substeps at Single Base Pair Resolution Biophysical Journal. 96: 367a. DOI: 10.1016/J.Bpj.2008.12.1977 |
0.694 |
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| 2009 |
Chemla YR, Moffitt JR, Aathavan K, Grimes S, Jardine P, Anderson DL, Bustamante C. High-resolution Optical Trap Measurements Of A Ringed DNA Translocase Biophysical Journal. 96: 193a. DOI: 10.1016/J.Bpj.2008.12.1030 |
0.795 |
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| 2009 |
Nollmann M, Ptacin J, Becker E, Pogliano K, Bustamante C. Mechanism Of DNA Translocation By SpoIIIE/Ftsk Biophysical Journal. 96: 36a. DOI: 10.1016/J.Bpj.2008.12.077 |
0.775 |
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| 2009 |
Zhang CZ, Seog J, Dill J, Smith SB, Zhang FX, Cecconi C, Marqusee S, Bustamante C, Springer TA. What can we learn from mechanical unfolding of a single protein domain by optical tweezers Aiche Annual Meeting, Conference Proceedings. |
0.741 |
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| 2008 |
Mejia YX, Mao H, Forde NR, Bustamante C. Thermal probing of E. coli RNA polymerase off-pathway mechanisms. Journal of Molecular Biology. 382: 628-37. PMID 18647607 DOI: 10.1016/J.Jmb.2008.06.079 |
0.799 |
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| 2008 |
Maragakis P, Ritort F, Bustamante C, Karplus M, Crooks GE. Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise. The Journal of Chemical Physics. 129: 024102. PMID 18624511 DOI: 10.1063/1.2937892 |
0.332 |
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| 2008 |
Marquis KA, Burton BM, Nollmann M, Ptacin JL, Bustamante C, Ben-Yehuda S, Rudner DZ. SpoIIIE strips proteins off the DNA during chromosome translocation. Genes & Development. 22: 1786-95. PMID 18593879 DOI: 10.1101/Gad.1684008 |
0.761 |
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| 2008 |
Ptacin JL, Nollmann M, Becker EC, Cozzarelli NR, Pogliano K, Bustamante C. Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis. Nature Structural & Molecular Biology. 15: 485-93. PMID 18391964 DOI: 10.1038/Nsmb.1412 |
0.811 |
|
| 2008 |
Chemla YR, Moffitt JR, Bustamante C. Exact solutions for kinetic models of macromolecular dynamics. The Journal of Physical Chemistry. B. 112: 6025-44. PMID 18373360 DOI: 10.1021/Jp076153R |
0.765 |
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| 2008 |
Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, Tinoco I. Following translation by single ribosomes one codon at a time Nature. 452: 598-603. PMID 18327250 DOI: 10.1038/Nature06716 |
0.672 |
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| 2008 |
Moffitt JR, Chemla YR, Smith SB, Bustamante C. Recent advances in optical tweezers. Annual Review of Biochemistry. 77: 205-28. PMID 18307407 DOI: 10.1146/Annurev.Biochem.77.043007.090225 |
0.755 |
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| 2008 |
Cecconi C, Shank EA, Dahlquist FW, Marqusee S, Bustamante C. Protein-DNA chimeras for single molecule mechanical folding studies with the optical tweezers. European Biophysics Journal : Ebj. 37: 729-38. PMID 18183383 DOI: 10.1007/S00249-007-0247-Y |
0.795 |
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| 2008 |
Green L, Kim CH, Bustamante C, Tinoco I. Characterization of the mechanical unfolding of RNA pseudoknots. Journal of Molecular Biology. 375: 511-28. PMID 18021801 DOI: 10.1016/J.Jmb.2007.05.058 |
0.742 |
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| 2008 |
Comolli LR, Spakowitz AJ, Siegerist CE, Jardine PJ, Grimes S, Anderson DL, Bustamante C, Downing KH. Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process. Virology. 371: 267-77. PMID 18001811 DOI: 10.1016/J.Virol.2007.07.035 |
0.712 |
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| 2007 |
Vieregg J, Cheng W, Bustamante C, Tinoco I. Measurement of the effect of monovalent cations on RNA hairpin stability Journal of the American Chemical Society. 129: 14966-14973. PMID 17997555 DOI: 10.1021/Ja074809O |
0.795 |
|
| 2007 |
Cheng W, Dumont S, Tinoco I, Bustamante C. NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork. Proceedings of the National Academy of Sciences of the United States of America. 104: 13954-9. PMID 17709749 DOI: 10.1073/Pnas.0702315104 |
0.741 |
|
| 2007 |
Tang M, Cecconi C, Bustamante C, Rio DC. Analysis of P element transposase protein-DNA interactions during the early stages of transposition. The Journal of Biological Chemistry. 282: 29002-12. PMID 17644523 DOI: 10.1074/Jbc.M704106200 |
0.712 |
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| 2007 |
Choy JL, Parekh SH, Chaudhuri O, Liu AP, Bustamante C, Footer MJ, Theriot JA, Fletcher DA. Differential force microscope for long time-scale biophysical measurements. The Review of Scientific Instruments. 78: 043711. PMID 17477674 DOI: 10.1063/1.2727478 |
0.32 |
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| 2007 |
Li PT, Bustamante C, Tinoco I. Real-time control of the energy landscape by force directs the folding of RNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 104: 7039-44. PMID 17438300 DOI: 10.1073/Pnas.0702137104 |
0.669 |
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| 2007 |
Galburt EA, Grill SW, Wiedmann A, Lubkowska L, Choy J, Nogales E, Kashlev M, Bustamante C. Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner. Nature. 446: 820-3. PMID 17361130 DOI: 10.1038/Nature05701 |
0.351 |
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| 2007 |
Leschziner AE, Saha A, Wittmeyer J, Zhang Y, Bustamante C, Cairns BR, Nogales E. Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method. Proceedings of the National Academy of Sciences of the United States of America. 104: 4913-8. PMID 17360331 DOI: 10.1073/Pnas.0700706104 |
0.328 |
|
| 2007 |
Nöllmann M, Stone MD, Bryant Z, Gore J, Crisona NJ, Hong SC, Mitelheiser S, Maxwell A, Bustamante C, Cozzarelli NR. Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque. Nature Structural & Molecular Biology. 14: 264-71. PMID 17334374 DOI: 10.1038/Nsmb1213 |
0.807 |
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| 2007 |
Hugel T, Michaelis J, Hetherington CL, Jardine PJ, Grimes S, Walter JM, Falk W, Anderson DL, Bustamante C. Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids. Plos Biology. 5: e59. PMID 17311473 DOI: 10.1371/Journal.Pbio.0050059 |
0.821 |
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| 2007 |
Wen JD, Manosas M, Li PT, Smith SB, Bustamante C, Ritort F, Tinoco I. Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results. Biophysical Journal. 92: 2996-3009. PMID 17293410 DOI: 10.1529/Biophysj.106.094052 |
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| 2007 |
Manosas M, Wen JD, Li PT, Smith SB, Bustamante C, Tinoco I, Ritort F. Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments. Biophysical Journal. 92: 3010-21. PMID 17293409 DOI: 10.1529/Biophysj.106.094243 |
0.683 |
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| 2007 |
Walter JM, Greenfield D, Bustamante C, Liphardt J. Light-powering Escherichia coli with proteorhodopsin Proceedings of the National Academy of Sciences of the United States of America. 104: 2408-2412. PMID 17277079 DOI: 10.1073/Pnas.0611035104 |
0.771 |
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| 2007 |
Li PTX, Bustamante C, Tinoco I. Real-time control of the energy landscape by force directs the folding of RNA molecules Proceedings of the National Academy of Sciences of the United States of America. 104: 7039-7044. DOI: 10.1073/pnas.0702137104 |
0.629 |
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| 2007 |
Cecconi C, Shank EA, Marqusee S, Bustamante CJ. Studying protein folding with laser tweezers Proceedings of the International School of Physics "Enrico Fermi". 165: 145-160. |
0.723 |
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| 2006 |
Zhang Y, Smith CL, Saha A, Grill SW, Mihardja S, Smith SB, Cairns BR, Peterson CL, Bustamante C. DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Molecular Cell. 24: 559-68. PMID 17188033 DOI: 10.1016/J.Molcel.2006.10.025 |
0.799 |
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| 2006 |
Li PTX, Bustamante C, Tinoco I. Unusual mechanical stability of a minimal RNA kissing complex Proceedings of the National Academy of Sciences of the United States of America. 103: 15847-15852. PMID 17043221 DOI: 10.1073/Pnas.0607202103 |
0.672 |
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| 2006 |
Mihardja S, Spakowitz AJ, Zhang Y, Bustamante C. Effect of force on mononucleosomal dynamics Proceedings of the National Academy of Sciences of the United States of America. 103: 15871-15876. PMID 17043216 DOI: 10.1073/Pnas.0607526103 |
0.798 |
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| 2006 |
Ptacin JL, Nöllmann M, Bustamante C, Cozzarelli NR. Identification of the FtsK sequence-recognition domain. Nature Structural & Molecular Biology. 13: 1023-5. PMID 17041598 DOI: 10.1038/Nsmb1157 |
0.797 |
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| 2006 |
Tinoco I, T. X. Li P. P, Bustamante C. Determination of thermodynamics and kinetics of RNA reactions by force Quarterly Reviews of Biophysics. 39: 325-360. PMID 17040613 DOI: 10.1017/S0033583506004446 |
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| 2006 |
Gore J, Bryant Z, Nöllmann M, Le MU, Cozzarelli NR, Bustamante C. DNA overwinds when stretched. Nature. 442: 836-9. PMID 16862122 DOI: 10.1038/Nature04974 |
0.814 |
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| 2006 |
Moffitt JR, Chemla YR, Izhaky D, Bustamante C. Differential detection of dual traps improves the spatial resolution of optical tweezers. Proceedings of the National Academy of Sciences of the United States of America. 103: 9006-11. PMID 16751267 DOI: 10.1073/Pnas.0603342103 |
0.748 |
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| 2006 |
Ritort F, Mihardja S, Smith SB, Bustamante C. Condensation transition in DNA-polyaminoamide dendrimer fibers studied using optical tweezers. Physical Review Letters. 96: 118301. PMID 16605879 DOI: 10.1103/Physrevlett.96.118301 |
0.771 |
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| 2006 |
Dumont S, Cheng W, Serebrov V, Beran RK, Tinoco I, Pyle AM, Bustamante C. RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP. Nature. 439: 105-8. PMID 16397502 DOI: 10.1038/Nature04331 |
0.761 |
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| 2006 |
Gore J, Bryant Z, Stone MD, Nöllmann M, Cozzarelli NR, Bustamante C. Mechanochemical analysis of DNA gyrase using rotor bead tracking. Nature. 439: 100-4. PMID 16397501 DOI: 10.1038/Nature04319 |
0.816 |
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| 2006 |
Li PT, Collin D, Smith SB, Bustamante C, Tinoco I. Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods. Biophysical Journal. 90: 250-60. PMID 16214869 DOI: 10.1529/Biophysj.105.068049 |
0.678 |
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| 2005 |
Bustamante C. Unfolding single RNA molecules: Bridging the gap between equilibrium and non-equilibrium statistical thermodynamics Quarterly Reviews of Biophysics. 38: 291-301. PMID 16817984 DOI: 10.1017/S0033583506004239 |
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| 2005 |
Gorostiza P, Tombola F, Verdaguer A, Smith SB, Bustamante C, Isacoff EY. Molecular handles for the mechanical manipulation of single-membrane proteins in living cells. Ieee Transactions On Nanobioscience. 4: 269-76. PMID 16433292 DOI: 10.1109/Tnb.2005.859552 |
0.335 |
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| 2005 |
Levy O, Ptacin JL, Pease PJ, Gore J, Eisen MB, Bustamante C, Cozzarelli NR. Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase. Proceedings of the National Academy of Sciences of the United States of America. 102: 17618-23. PMID 16301526 DOI: 10.1073/Pnas.0508932102 |
0.8 |
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| 2005 |
Wilcox AJ, Choy J, Bustamante C, Matouschek A. Effect of protein structure on mitochondrial import. Proceedings of the National Academy of Sciences of the United States of America. 102: 15435-40. PMID 16230614 DOI: 10.1073/Pnas.0507324102 |
0.303 |
|
| 2005 |
Brown TA, Cecconi C, Tkachuk AN, Bustamante C, Clayton DA. Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism. Genes & Development. 19: 2466-76. PMID 16230534 DOI: 10.1101/Gad.1352105 |
0.727 |
|
| 2005 |
Cecconi C, Shank EA, Bustamante C, Marqusee S. Direct observation of the three-state folding of a single protein molecule. Science (New York, N.Y.). 309: 2057-60. PMID 16179479 DOI: 10.1126/Science.1116702 |
0.785 |
|
| 2005 |
Collin D, Ritort F, Jarzynski C, Smith SB, Tinoco I, Bustamante C. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. Nature. 437: 231-4. PMID 16148928 DOI: 10.1038/Nature04061 |
0.681 |
|
| 2005 |
Chemla YR, Aathavan K, Michaelis J, Grimes S, Jardine PJ, Anderson DL, Bustamante C. Mechanism of force generation of a viral DNA packaging motor. Cell. 122: 683-92. PMID 16143101 DOI: 10.1016/J.Cell.2005.06.024 |
0.688 |
|
| 2005 |
Tang M, Cecconi C, Kim H, Bustamante C, Rio DC. Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes. Genes & Development. 19: 1422-5. PMID 15964992 DOI: 10.1101/Gad.1317605 |
0.703 |
|
| 2005 |
Mao H, Arias-Gonzalez JR, Smith SB, Tinoco I, Bustamante C. Temperature control methods in a laser tweezers system. Biophysical Journal. 89: 1308-16. PMID 15923237 DOI: 10.1529/Biophysj.104.054536 |
0.71 |
|
| 2005 |
Case RB, Chang YP, Smith SB, Gore J, Cozzarelli NR, Bustamante C. Retraction. Science (New York, N.Y.). 307: 1409. PMID 15746408 DOI: 10.1126/science.307.5714.1409b |
0.697 |
|
| 2005 |
Pease PJ, Levy O, Cost GJ, Gore J, Ptacin JL, Sherratt D, Bustamante C, Cozzarelli NR. Sequence-directed DNA translocation by purified FtsK. Science (New York, N.Y.). 307: 586-90. PMID 15681387 DOI: 10.1126/Science.1104885 |
0.814 |
|
| 2005 |
Li G, Levitus M, Bustamante C, Widom J. Rapid spontaneous accessibility of nucleosomal DNA. Nature Structural & Molecular Biology. 12: 46-53. PMID 15580276 DOI: 10.1038/Nsmb869 |
0.656 |
|
| 2005 |
Bustamante C, Liphardt J, Ritort F. The Nonequilibrium Thermodynamics of Small Systems Physics Today. 58: 43-48. DOI: 10.1063/1.2012462 |
0.735 |
|
| 2004 |
Bustamante C. Of torques, forces, and protein machines Protein Science. 13: 3061-3065. PMID 15498944 DOI: 10.1110/Ps.041064504 |
0.407 |
|
| 2004 |
Trepagnier EH, Jarzynski C, Ritort F, Crooks GE, Bustamante CJ, Liphardt J. Experimental test of Hatano and Sasa's nonequilibrium steady-state equality. Proceedings of the National Academy of Sciences of the United States of America. 101: 15038-41. PMID 15469914 DOI: 10.1073/Pnas.0406405101 |
0.765 |
|
| 2004 |
Bustamante C, Chemla YR, Forde NR, Izhaky D. Mechanical processes in biochemistry. Annual Review of Biochemistry. 73: 705-48. PMID 15189157 DOI: 10.1146/Annurev.Biochem.72.121801.161542 |
0.76 |
|
| 2004 |
Case RB, Chang YP, Smith SB, Gore J, Cozzarelli NR, Bustamante C. The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure. Science (New York, N.Y.). 305: 222-7. PMID 15178751 DOI: 10.1126/Science.1098225 |
0.796 |
|
| 2004 |
Goedken ER, Levitus M, Johnson A, Bustamante C, O'Donnell M, Kuriyan J. Fluorescence measurements on the E.coli DNA polymerase clamp loader: implications for conformational changes during ATP and clamp binding. Journal of Molecular Biology. 336: 1047-59. PMID 15037068 DOI: 10.1016/J.Jmb.2003.12.074 |
0.657 |
|
| 2003 |
Gore J, Ritort F, Bustamante C. Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements Proceedings of the National Academy of Sciences of the United States of America. 100: 12564-12569. PMID 14528008 DOI: 10.1073/Pnas.1635159100 |
0.395 |
|
| 2003 |
Matouschek A, Bustamante C. Finding a protein's Achilles heel Nature Structural Biology. 10: 674-676. PMID 12942137 DOI: 10.1038/Nsb0903-674 |
0.353 |
|
| 2003 |
Bryant Z, Stone MD, Gore J, Smith SB, Cozzarelli NR, Bustamante C. Structural transitions and elasticity from torque measurements on DNA. Nature. 424: 338-41. PMID 12867987 DOI: 10.1038/Nature01810 |
0.823 |
|
| 2003 |
Stone MD, Bryant Z, Crisona NJ, Smith SB, Vologodskii A, Bustamante C, Cozzarelli NR. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 100: 8654-9. PMID 12857958 DOI: 10.1073/Pnas.1133178100 |
0.805 |
|
| 2003 |
Kellermayer MS, Bustamante C, Granzier HL. Mechanics and structure of titin oligomers explored with atomic force microscopy. Biochimica Et Biophysica Acta. 1604: 105-14. PMID 12765767 DOI: 10.1016/S0005-2728(03)00029-X |
0.376 |
|
| 2003 |
Onoa B, Dumont S, Liphardt J, Smith SB, Tinoco I, Bustamante C. Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme. Science (New York, N.Y.). 299: 1892-5. PMID 12649482 DOI: 10.1126/Science.1081338 |
0.806 |
|
| 2003 |
Smith SB, Cui Y, Bustamante C. Optical-trap force transducer that operates by direct measurement of light momentum. Methods in Enzymology. 361: 134-62. PMID 12624910 DOI: 10.1016/S0076-6879(03)61009-8 |
0.36 |
|
| 2003 |
Rivetti C, Codeluppi S, Dieci G, Bustamante C. Visualizing RNA extrusion and DNA wrapping in transcription elongation complexes of bacterial and eukaryotic RNA polymerases. Journal of Molecular Biology. 326: 1413-26. PMID 12595254 DOI: 10.1016/S0022-2836(03)00042-1 |
0.395 |
|
| 2003 |
Keller D, Swigon D, Bustamante C. Relating single-molecule measurements to thermodynamics. Biophysical Journal. 84: 733-8. PMID 12547757 DOI: 10.1016/S0006-3495(03)74892-9 |
0.352 |
|
| 2003 |
Bustamante C, Bryant Z, Smith SB. Ten years of tension: single-molecule DNA mechanics. Nature. 421: 423-7. PMID 12540915 DOI: 10.1038/Nature01405 |
0.722 |
|
| 2002 |
Tinoco I, Bustamante C. The effect of force on thermodynamics and kinetics of single molecule reactions. Biophysical Chemistry. 101: 513-33. PMID 12488024 DOI: 10.1016/S0301-4622(02)00177-1 |
0.658 |
|
| 2002 |
Ritort F, Bustamante C, Tinoco I. A two-state kinetic model for the unfolding of single molecules by mechanical force Proceedings of the National Academy of Sciences of the United States of America. 99: 13544-13548. PMID 12374867 DOI: 10.1073/Pnas.172525099 |
0.667 |
|
| 2002 |
Forde NR, Izhaky D, Woodcock GR, Wuite GJ, Bustamante C. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 99: 11682-7. PMID 12193647 DOI: 10.1073/Pnas.142417799 |
0.79 |
|
| 2002 |
Liphardt J, Dumont S, Smith SB, Tinoco I, Bustamante C. Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality. Science (New York, N.Y.). 296: 1832-5. PMID 12052949 DOI: 10.1126/Science.1071152 |
0.793 |
|
| 2002 |
Parak WJ, Gerion D, Zanchet D, Woerz AS, Pellegrino T, Micheel C, Williams SC, Seitz M, Bruehl RE, Bryant Z, Bustamante C, Bertozzi CR, Alivisatos AP. Conjugation of DNA to silanized colloidal semiconductor nanocrystalline quantum dots Chemistry of Materials. 14: 2113-2119. DOI: 10.1021/Cm0107878 |
0.667 |
|
| 2001 |
Smith DE, Tans SJ, Smith SB, Grimes S, Anderson DL, Bustamante C. The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature. 413: 748-52. PMID 11607035 DOI: 10.1038/35099581 |
0.605 |
|
| 2001 |
d'Erme M, Yang G, Sheagly E, Palitti F, Bustamante C. Effect of poly(ADP-ribosyl)ation and Mg2+ ions on chromatin structure revealed by scanning force microscopy. Biochemistry. 40: 10947-55. PMID 11551189 DOI: 10.1021/Bi002742A |
0.301 |
|
| 2001 |
Liphardt J, Onoa B, Smith SB, Tinoco I, Bustamante C. Reversible unfolding of single RNA molecules by mechanical force. Science (New York, N.Y.). 292: 733-7. PMID 11326101 DOI: 10.1126/Science.1058498 |
0.811 |
|
| 2001 |
Bustamante C, Macosko JC, Wuite GJ. Grabbing the cat by the tail: manipulating molecules one by one. Nature Reviews. Molecular Cell Biology. 1: 130-6. PMID 11253365 DOI: 10.1038/35040072 |
0.633 |
|
| 2001 |
Kellermayer MS, Smith SB, Bustamante C, Granzier HL. Mechanical fatigue in repetitively stretched single molecules of titin. Biophysical Journal. 80: 852-63. PMID 11159452 DOI: 10.1016/S0006-3495(01)76064-X |
0.363 |
|
| 2001 |
Postow L, Ullsperger C, Keller RW, Bustamante C, Vologodskii AV, Cozzarelli NR. Positive torsional strain causes the formation of a four-way junction at replication forks. The Journal of Biological Chemistry. 276: 2790-6. PMID 11056156 DOI: 10.1074/Jbc.M006736200 |
0.705 |
|
| 2001 |
Bustamante C, Liphardt J, Onoa B, Smith SB, Collin D, Tinoco I. Unfolding Single RNA Molecules with Optical Tweezers Microscopy and Microanalysis. 7: 26-27. DOI: 10.1017/S1431927600026209 |
0.793 |
|
| 2000 |
Kellermayer MS, Smith S, Bustamante C, Granzier HL. Mechanical manipulation of single titin molecules with laser tweezers. Advances in Experimental Medicine and Biology. 481: 111-26; discussion 1. PMID 10987069 DOI: 10.1007/978-1-4615-4267-4_7 |
0.363 |
|
| 2000 |
Wuite GJL, Davenport RJ, Rappaport A, Bustamante C. An integrated laser trap/flow control video microscope for the study of single biomolecules. Biophysical Journal. 79: 1155-1167. PMID 10920045 DOI: 10.1016/S0006-3495(00)76369-7 |
0.344 |
|
| 2000 |
Bustamante C, Smith SB, Liphardt J, Smith D. Single-molecule studies of DNA mechanics. Current Opinion in Structural Biology. 10: 279-85. PMID 10851197 DOI: 10.1016/S0959-440X(00)00085-3 |
0.802 |
|
| 2000 |
Davenport RJ, Wuite GJL, Landick R, Bustamante C. Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase Science. 287: 2497-2500. PMID 10741971 DOI: 10.1126/Science.287.5462.2497 |
0.36 |
|
| 2000 |
Baumann CG, Bloomfield VA, Smith SB, Bustamante C, Wang MD, Block SM. Stretching of single collapsed DNA molecules. Biophysical Journal. 78: 1965-78. PMID 10733975 DOI: 10.1016/S0006-3495(00)76744-0 |
0.416 |
|
| 2000 |
Wuite GJ, Smith SB, Young M, Keller D, Bustamante C. Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature. 404: 103-6. PMID 10716452 DOI: 10.1038/35003614 |
0.688 |
|
| 2000 |
Keller D, Bustamante C. The mechanochemistry of molecular motors Biophysical Journal. 78: 541-556. PMID 10653770 DOI: 10.1016/S0006-3495(00)76615-X |
0.341 |
|
| 2000 |
Katritch V, Bustamante C, Olson WK. Pulling chromatin fibers: computer simulations of direct physical micromanipulations. Journal of Molecular Biology. 295: 29-40. PMID 10623506 DOI: 10.1006/Jmbi.1999.3021 |
0.386 |
|
| 2000 |
Yang G, Cecconi C, Baase WA, Vetter IR, Breyer WA, Haack JA, Matthews BW, Dahlquist FW, Bustamante C. Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 97: 139-44. PMID 10618384 DOI: 10.1073/Pnas.97.1.139 |
0.728 |
|
| 1999 |
Leuba SH, Bustamante C. Analysis of chromatin by scanning force microscopy Methods in Molecular Biology (Clifton, N.J.). 119: 143-160. PMID 10804509 DOI: 10.1385/1-59259-681-9:143 |
0.302 |
|
| 1999 |
Tinoco I, Bustamante C. How RNA folds Journal of Molecular Biology. 293: 271-281. PMID 10550208 DOI: 10.1006/Jmbi.1999.3001 |
0.647 |
|
| 1999 |
Guthold M, Zhu X, Rivetti C, Yang G, Thomson NH, Kasas S, Hansma HG, Smith B, Hansma PK, Bustamante C. Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase Biophysical Journal. 77: 2284-2294. PMID 10512846 DOI: 10.1016/S0006-3495(99)77067-0 |
0.405 |
|
| 1999 |
Hegner M, Smith SB, Bustamante C. Polymerization and mechanical properties of single RecA-DNA filaments. Proceedings of the National Academy of Sciences of the United States of America. 96: 10109-14. PMID 10468570 DOI: 10.1073/Pnas.96.18.10109 |
0.412 |
|
| 1999 |
Rivetti C, Guthold M, Bustamante C. Wrapping of DNA around the E. coli RNA polymerase open promoter complex Embo Journal. 18: 4464-4475. PMID 10449412 DOI: 10.1093/Emboj/18.16.4464 |
0.406 |
|
| 1999 |
Bustamante C, Guthold M, Zhu X, Yang G. Facilitated target location on DNA by individual Escherichia coli RNA polymerase molecules observed with the scanning force microscope operating in liquid Journal of Biological Chemistry. 274: 16665-16668. PMID 10358002 DOI: 10.1074/Jbc.274.24.16665 |
0.302 |
|
| 1999 |
Gurrieri S, Smith SB, Bustamante C. Trapping of megabase-sized DNA molecules during agarose gel electrophoresis Proceedings of the National Academy of Sciences of the United States of America. 96: 453-458. PMID 9892654 DOI: 10.1073/Pnas.96.2.453 |
0.346 |
|
| 1998 |
Stigter D, Bustamante C. Theory for the hydrodynamic and electrophoretic stretch of tethered B- DNA Biophysical Journal. 75: 1197-1210. PMID 9726922 DOI: 10.1016/S0006-3495(98)74039-1 |
0.32 |
|
| 1998 |
Kellermayer MSZ, Smith SB, Bustamante C, Granzier HL. Complete unfolding of the titin molecule under external force Journal of Structural Biology. 122: 197-205. PMID 9724621 DOI: 10.1006/Jsbi.1998.3988 |
0.362 |
|
| 1998 |
Rivetti C, Walker C, Bustamante C. Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility Journal of Molecular Biology. 280: 41-59. PMID 9653030 DOI: 10.1006/Jmbi.1998.1830 |
0.337 |
|
| 1997 |
Bustamante C, Rivetti C, Keller DJ. Scanning force microscopy under aqueous solutions Current Opinion in Structural Biology. 7: 709-716. PMID 9345631 DOI: 10.1016/S0959-440X(97)80082-6 |
0.333 |
|
| 1997 |
Gurrieri S, Bustamante C. Purification and staining of intact yeast DNA chromosomes and real-time observation of their migration during gel electrophoresis Biochemical Journal. 326: 131-138. PMID 9337860 DOI: 10.1042/Bj3260131 |
0.394 |
|
| 1997 |
Rippe K, Guthold M, von Hippel PH, Bustamante C. Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase x sigma 54 holoenzyme by scanning force microscopy. Journal of Molecular Biology. 270: 125-38. PMID 9236116 DOI: 10.1006/Jmbi.1997.1079 |
0.372 |
|
| 1997 |
Baumann CG, Smith SB, Bloomfield VA, Bustamante C. Ionic effects on the elasticity of single DNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 94: 6185-90. PMID 9177192 DOI: 10.1073/Pnas.94.12.6185 |
0.364 |
|
| 1997 |
Bustamante C, Zuccheri G, Leuba SH, Yang G, Samori B. Visualization and analysis of chromatin by scanning force microscopy. Methods (San Diego, Calif.). 12: 73-83. PMID 9169197 DOI: 10.1006/Meth.1997.0449 |
0.573 |
|
| 1997 |
Kellermayer MSZ, Smith SB, Granzier HL, Bustamante C. Folding-unfolding transitions in single titin molecules characterized with laser tweezers Science. 276: 1112-1116. PMID 9148805 DOI: 10.1126/Science.276.5315.1112 |
0.368 |
|
| 1997 |
Wyman C, Rombel I, North AK, Bustamante C, Kustu S. Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein. Science (New York, N.Y.). 275: 1658-61. PMID 9054362 DOI: 10.1126/Science.275.5306.1658 |
0.648 |
|
| 1997 |
Kasas S, Thomson NH, Smith BL, Hansma HG, Zhu X, Guthold M, Bustamante C, Kool ET, Kashlev M, Hansma PK. Escherichia coli RNA polymerase activity observed using atomic force microscopy Biochemistry. 36: 461-468. PMID 9012661 DOI: 10.1021/Bi9624402 |
0.405 |
|
| 1997 |
García R, Tamayo J, Bustamante C. Scanning tunneling microscopy imaging and selective modification of purple membranes International Journal of Imaging Systems and Technology. 8: 168-174. DOI: 10.1002/(Sici)1098-1098(1997)8:2<168::Aid-Ima4>3.0.Co;2-8 |
0.334 |
|
| 1996 |
Rivetti C, Guthold M, Bustamante C. Scanning force microscopy of DNA deposited onto mica: Equilibration versus kinetic trapping studied by statistical polymer chain analysis Journal of Molecular Biology. 264: 919-932. PMID 9000621 DOI: 10.1006/Jmbi.1996.0687 |
0.397 |
|
| 1996 |
Gurrieri S, Smith SB, Sam Wells K, Johnson LD, Bustamante C. Real-time imaging of the reorientation mechanisms of YOYO-labelled DNA molecules during 90° and 120° pulsed field gel electrophoresis Nucleic Acids Research. 24: 4759-4767. PMID 8972863 DOI: 10.1093/Nar/24.23.4759 |
0.39 |
|
| 1996 |
Smith SB, Cui Y, Bustamante C. Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules Science. 271: 795-799. PMID 8628994 DOI: 10.1126/Science.271.5250.795 |
0.41 |
|
| 1996 |
Yang G, Vesenka JP, Bustamante CJ. Effects of tip-sample forces and humidity on the imaging of DNA with a scanning force microscope Scanning. 18: 344-350. DOI: 10.1002/Sca.1996.4950180504 |
0.387 |
|
| 1995 |
Biscarini F, Bustamante C, Kenkre VM. Scanning tunneling microscopy. II. Calculation of images of atomic and molecular adsorbates. Physical Review. B, Condensed Matter. 51: 11089-11102. PMID 9977815 DOI: 10.1103/Physrevb.51.11089 |
0.638 |
|
| 1995 |
Wyman C, Grotkopp E, Bustamante C, Nelson H. Determination of heat-shock transcription factor 2 stoichiometry at looped DNA complexes using scanning force microscopy. The Embo Journal. 14: 117-123. DOI: 10.1002/J.1460-2075.1995.Tb06981.X |
0.636 |
|
| 1994 |
Bustamante C, Marko JF, Siggia ED, Smith S. Entropic elasticity of λ-phage DNA Science. 265: 1599-1600. PMID 8079175 DOI: 10.1126/Science.8079175 |
0.355 |
|
| 1994 |
Erie DA, Yang G, Schultz HC, Bustamante C. DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity. Science (New York, N.Y.). 266: 1562-6. PMID 7985026 DOI: 10.1126/Science.7985026 |
0.632 |
|
| 1994 |
Leuba SH, Yang G, Robert C, Samori B, van Holde K, Zlatanova J, Bustamante C. Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy. Proceedings of the National Academy of Sciences of the United States of America. 91: 11621-5. PMID 7972114 DOI: 10.1073/Pnas.91.24.11621 |
0.557 |
|
| 1994 |
Guthold M, Bezanilla M, Erie DA, Jenkins B, Hansma HG, Bustamante C. Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope. Proceedings of the National Academy of Sciences of the United States of America. 91: 12927-31. PMID 7809148 DOI: 10.1073/Pnas.91.26.12927 |
0.678 |
|
| 1994 |
Bustamante C, Erie DA, Keller D. Biochemical and structural applications of scanning force microscopy Current Opinion in Structural Biology. 4: 750-760. DOI: 10.1016/S0959-440X(94)90175-9 |
0.628 |
|
| 1993 |
Keller D, Bustamante C. Attaching molecules to surfaces for scanning probe microscopy Biophysical Journal. 64: 896-897. PMID 19431877 DOI: 10.1016/S0006-3495(93)81449-8 |
0.343 |
|
| 1993 |
Rees WA, Keller RW, Vesenka JP, Yang G, Bustamante C. Evidence of DNA bending in transcription complexes imaged by scanning force microscopy. Science (New York, N.Y.). 260: 1646-9. PMID 8503010 DOI: 10.1126/Science.8503010 |
0.387 |
|
| 1993 |
Samorí B, Siligardi G, Quagliariello C, Weisenhorn AL, Vesenka J, Bustamante CJ. Chirality of DNA supercoiling assigned by scanning force microscopy. Proceedings of the National Academy of Sciences of the United States of America. 90: 3598-601. PMID 8475108 DOI: 10.1073/Pnas.90.8.3598 |
0.638 |
|
| 1993 |
Dunlap DD, García R, Schabtach E, Bustamante C. Masking generates contiguous segments of metal-coated and bare DNA for scanning tunneling microscope imaging Proceedings of the National Academy of Sciences of the United States of America. 90: 7652-7655. PMID 8356067 DOI: 10.1073/Pnas.90.16.7652 |
0.349 |
|
| 1993 |
Samori B, Siligardi G, Quagliarello C, Weisenhorn AL, Vesenka J, Bustamante CJ. Chirality of the local supercoiling of individual DNA molecules assigned by atomic force microscopy Proceedings of Spie. 1855: 12-16. DOI: 10.1117/12.146374 |
0.618 |
|
| 1993 |
Pasternack RF, Bustamante C, Collings PJ, Giannetto A, Gibbs EJ. Porphyrin Assemblies On DNA As Studied By A Resonance Light-Scattering Technique Journal of the American Chemical Society. 115: 5393-5399. DOI: 10.1021/Ja00066A006 |
0.309 |
|
| 1992 |
Hansma HG, Vesenka J, Siegerist C, Kelderman G, Morrett H, Sinsheimer RL, Elings V, Bustamante C, Hansma PK. Reproducible imaging and dissection of plasmid DNA under liquid with the atomic force microscope. Science (New York, N.Y.). 256: 1180-4. PMID 1589799 DOI: 10.1126/Science.256.5060.1180 |
0.361 |
|
| 1992 |
Kenkre VM, Biscarini F, Bustamante C. Theoretical framework for the interpretation of STM images of adsorbates. Ultramicroscopy. 42: 122-7. PMID 1523729 DOI: 10.1016/0304-3991(92)90255-I |
0.641 |
|
| 1992 |
Smith SB, Finzi L, Bustamante C. Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads Science. 258: 1122-1126. PMID 1439819 DOI: 10.1126/Science.1439819 |
0.424 |
|
| 1992 |
García R, Yuqiu J, Schabtach E, Bustamante C. Deposition and imaging of metal-coated biomolecules with the STM Ultramicroscopy. 42: 1250-1254. PMID 1413263 DOI: 10.1016/0304-3991(92)90431-I |
0.303 |
|
| 1992 |
Vesenka J, Guthold M, Tang CL, Keller D, Delaine E, Bustamante C. Substrate preparation for reliable imaging of DNA molecules with the scanning force microscope Ultramicroscopy. 42: 1243-1249. PMID 1413262 DOI: 10.1016/0304-3991(92)90430-R |
0.406 |
|
| 1992 |
Keller RW, Keller DJ, Bear D, Vasenka J, Bustamante C. Electrodeposition procedure of E. coli RNA polymerase onto gold and deposition of E. coli RNA polymerase onto mica for observation with scanning force microscopy Ultramicroscopy. 1173-1180. PMID 1413255 DOI: 10.1016/0304-3991(92)90420-O |
0.315 |
|
| 1992 |
Bustamante C, Vesenka J, Chun Lin Tang, Rees W, Guthold M, Keller R. Circular DNA molecules imaged in air by scanning force microscopy Biochemistry. 31: 22-26. PMID 1310032 DOI: 10.1021/Bi00116A005 |
0.392 |
|
| 1992 |
Yuqiu J, Juang C, Keller D, Bustamante C, Beach D, Houseal T, Builes E. Mechanical, electrical, and chemical manipulation of single DNA molecules Nanotechnology. 3: 16-20. DOI: 10.1088/0957-4484/3/1/004 |
0.379 |
|
| 1991 |
Bustamante C, Samorì B, Builes E. Daunomycin inverts the long-range chirality of DNA condensed states. Biochemistry. 30: 5661-6. PMID 2043609 DOI: 10.1021/Bi00237A004 |
0.599 |
|
| 1991 |
Smith SB, Heller C, Bustamante C. Model and computer simulations of the motion of DNA molecules during pulse field gel electrophoresis. Biochemistry. 30: 5264-74. PMID 2036393 DOI: 10.1021/Bi00235A021 |
0.324 |
|
| 1991 |
Keller RW, Bear D, Bustamante C. A method for imaging E. coli. RNA polymerase holoenzyme with the scanning tunneling microscope in an aqueous environment Journal of Vacuum Science & Technology B. 9: 1291-1297. DOI: 10.1116/1.585224 |
0.327 |
|
| 1990 |
Gurrieri S, Rizzarelli E, Beach D, Bustamante C. Imaging of kinked configurations of DNA molecules undergoing orthogonal field alternating gel electrophoresis by fluorescence microscopy Biochemistry. 29: 3396-3401. PMID 2334700 DOI: 10.1021/Bi00465A036 |
0.359 |
|
| 1990 |
Bustamante C, Houseal TW, Beach DA, Maestre MF. Fluorescence microscopy of the dynamics of supercoiling, folding, and condensation of bacterial chromosomes, induced by acridine orange Journal of Biomolecular Structure and Dynamics. 8: 643-655. PMID 2100523 DOI: 10.1080/07391102.1990.10507833 |
0.307 |
|
| 1990 |
Bustamante C, Gurrieri S, Smith SB. Observation of single DNA molecules during pulsed-field gel electrophoresis by fluorescence microscopy Methods. 1: 151-159. DOI: 10.1016/S1046-2023(05)80130-6 |
0.369 |
|
| 1989 |
Dunlap DD, Bustamante C. Images of single-stranded nucleic acids by scanning tunnelling microscopy Nature. 342: 204-206. PMID 2812014 DOI: 10.1038/342204A0 |
0.362 |
|
| 1989 |
Houseal TW, Bustamante C, Stump RF, Maestre MF. Real-time imaging of single DNA molecules with fluorescence microscopy Biophysical Journal. 56: 507-516. PMID 2790136 DOI: 10.1016/S0006-3495(89)82697-9 |
0.402 |
|
| 1989 |
Keller D, Bustamante C, Keller RW. Imaging of single uncoated DNA molecules by scanning tunneling microscopy Proceedings of the National Academy of Sciences of the United States of America. 86: 5356-5360. PMID 2748591 DOI: 10.1073/Pnas.86.14.5356 |
0.387 |
|
| 1988 |
Spada GP, Gottarelli G, Samori B, Bustamante CJ, Wells KS. A study of some lyotropic cholesteric mesophases by circular and linear dichroism and by circular intensity differential scattering Liquid Crystals. 3: 101-113. DOI: 10.1080/02678298808086353 |
0.545 |
|
| 1985 |
Keller D, Bustamante C, Maestre MF, Tinoco I. Model computations on the differential scattering of circularly polarized light (CIDS) by dense macromolecular particles Biopolymers - Peptide Science Section. 24: 783-797. PMID 4016215 DOI: 10.1002/Bip.360240505 |
0.599 |
|
| 1985 |
Keller D, Bustamante C, Maestre MF, Tinoco I. Imaging of optically active biological structures by use of circularly polarized light. Proceedings of the National Academy of Sciences of the United States of America. 82: 401-5. PMID 3855558 DOI: 10.1073/Pnas.82.2.401 |
0.615 |
|
| 1985 |
Mickols W, Tinoco I, Katz JE, Maestre MF, Bustamante C. Imaging differential polarization microscope with electronic readout Review of Scientific Instruments. 56: 2228-2236. DOI: 10.1063/1.1138354 |
0.609 |
|
| 1985 |
Mickols WC, Bustamante C, Maestre MF, Tinoco I, Embury SH. Differential Polarization Microscopy: A New Imaging Technique Bio/Technology. 3: 711-714. DOI: 10.1038/Nbt0885-711 |
0.608 |
|
| 1984 |
Bustamante C, Stigter D. Intercalation of cationic dyes in the DNA double helix: introductory theory Biopolymers - Peptide Science Section. 23: 629-645. PMID 6713075 DOI: 10.1002/Bip.360230405 |
0.321 |
|
| 1984 |
Tinoco I, Maestre MF, Bustamante C, Keller D. Use of circularly polarized light to study biological macromolecules Pure and Applied Chemistry. 56: 1423-1428. DOI: 10.1351/Pac198456101423 |
0.612 |
|
| 1984 |
Bustamante CJ, Wells KS, Keller D, Samori B, Maestre MF, Tinoco I. The Circular Intensity Differential Scattering (CIDS) of Cholesteric and Blue Mesophases Molecular Crystals and Liquid Crystals. 111: 79-102. DOI: 10.1080/00268948408082177 |
0.707 |
|
| 1984 |
Keller D, Bustamante C, Tinoco I. Quantum mechanical treatment of circular intensity differential scattering: The elastic process The Journal of Chemical Physics. 81: 1643-1649. DOI: 10.1063/1.447879 |
0.601 |
|
| 1984 |
Bustamante C, Maestre MF, Keller D, Tinoco I. Differential scattering (CIDS) of circularly polarized light by dense particles The Journal of Chemical Physics. 80: 4817-4823. DOI: 10.1063/1.446502 |
0.611 |
|
| 1983 |
Bustamante C, Tinoco I, Maestre MF. Circular differential scattering can be an important part of the circular dichroism of macromolecules Proceedings of the National Academy of Sciences of the United States of America. 80: 3568-3572. PMID 6574499 DOI: 10.1073/Pnas.80.12.3568 |
0.601 |
|
| 1983 |
Tinoco I, Maestre MF, Bustamante C. Circular dichroism in samples which scatter light Trends in Biochemical Sciences. 8: 41-44. DOI: 10.1016/0968-0004(83)90379-1 |
0.588 |
|
| 1982 |
Maestre MF, Bustamante C, Hayes TL, Subirana JA, Tinoco I. Differential scattering of circularly polarized light by the helical sperm head from the octopus Eledone cirrhosa. Nature. 298: 773-4. PMID 7110315 DOI: 10.1038/298773A0 |
0.599 |
|
| 1982 |
Bustamante C, Tinoco I, Maestre MF. Circular intensity differential scattering of light. IV. Randomly oriented species The Journal of Chemical Physics. 76: 3440-3446. DOI: 10.1063/1.443442 |
0.622 |
|
| 1981 |
Bustamante C, Tinoco I, Maestre MF. Circular intensity differential scattering of light by helical structures. III. A general polarizability tensor and anomalous scattering The Journal of Chemical Physics. 74: 4839-4850. DOI: 10.1063/1.441736 |
0.593 |
|
| 1980 |
Bustamante C, Maestre MF, Tinoco I. Circular intensity differential scattering of light by helical structures. I. Theory The Journal of Chemical Physics. 73: 4273-4281. DOI: 10.1063/1.440709 |
0.604 |
|
| 1980 |
Bustamante C, Maestre MF, Tinoco I. Circular intensity differential scattering of light by helical structures. II. Applications The Journal of Chemical Physics. 73: 6046-6055. DOI: 10.1063/1.440139 |
0.604 |
|
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