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Robert M. Stroud - Related publications

University of California, San Francisco, San Francisco, CA 
membrane protein characterizations and crystal structures
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zohib M, Maheshwari D, Pal RK, Freitag-Pohl S, Biswal BK, Pohl E, Arora A. Crystal structure of the GDP-bound GTPase domain of Rab5a from Leishmania donovani. Acta Crystallographica. Section F, Structural Biology Communications. 76: 544-556. PMID 33135673 DOI: 10.1107/S2053230X20013722   
2020 Clark JJ, Orban ZJ, Carlson HA. Predicting binding sites from unbound versus bound protein structures. Scientific Reports. 10: 15856. PMID 32985584 DOI: 10.1038/s41598-020-72906-7   
2020 Cozier GE, Lubbe L, Sturrock ED, Acharya KR. Angiotensin-converting enzyme open for business: structural insights into the sub-domain dynamics. The Febs Journal. PMID 33067882 DOI: 10.1111/febs.15601   
2020 Kaur N, Sagar A, Sharma P, Ashish, Pati PK. Structural insights into rice SalTol QTL located SALT protein. Scientific Reports. 10: 16589. PMID 33024209 DOI: 10.1038/s41598-020-73517-y   
2020 Hadda Y, Remes M, Adam V, Heger Z. Toward structure-based drug design against the epidermal growth factor receptor (EGFR). Drug Discovery Today. PMID 33075469 DOI: 10.1016/j.drudis.2020.10.007   
2020 Oliva F, Flores-Canales JC, Pieraccini S, Morelli CF, Sironi M, Schiøtt B. Simulating Multiple Substrate-Binding Events by γ-Glutamyltransferase Using Accelerated Molecular Dynamics. The Journal of Physical Chemistry. B. PMID 33112625 DOI: 10.1021/acs.jpcb.0c06907   
2020 Pacheco S, Quiliche JPJ, Gómez I, Sánchez J, Soberón M, Bravo A. Rearrangement of N-Terminal α-Helices of Cry1Ab Toxin Essential for Oligomer Assembly and Toxicity. Toxins. 12. PMID 33049917 DOI: 10.3390/toxins12100647   
2020 Nyenhuis DA, Nilaweera TD, Cafiso DS. Native Cell Environment Constrains Loop Structure in the Escherichia coli Cobalamin Transporter BtuB. Biophysical Journal. 119: 1550-1557. PMID 32946767 DOI: 10.1016/j.bpj.2020.08.034   
2020 Sampson CDD, Stewart MJ, Mindell JA, Mulligan C. Solvent accessibility changes in a Na-dependent C-dicarboxylate transporter suggest differential substrate effects in a multistep mechanism. The Journal of Biological Chemistry. PMID 33087444 DOI: 10.1074/jbc.RA120.013894   
2020 Olotu FA, Omolabi KF, Soliman MES. Leaving no stone unturned: Allosteric targeting of SARS-CoV-2 spike protein at putative druggable sites disrupts human angiotensin-converting enzyme interactions at the receptor binding domain. Informatics in Medicine Unlocked. 21: 100451. PMID 33083517 DOI: 10.1016/j.imu.2020.100451   
2020 Hahn H, Lee DE, Jang DM, Kim J, Lee Y, Cheong H, Han BW, Kim HS. Structural Insight on Functional Regulation of Human MINERVA Protein. International Journal of Molecular Sciences. 21. PMID 33142954 DOI: 10.3390/ijms21218186   
2020 Muthuramalingam M, Whittier SK, Lovell S, Battaile KP, Tachiyama S, Johnson DK, Picking WL, Picking WD. The Structures of SctK and SctD from Pseudomonas aeruginosa Reveal the Interface of the Type III Secretion System Basal Body and Sorting Platform. Journal of Molecular Biology. PMID 33122003 DOI: 10.1016/j.jmb.2020.10.027   
2020 Smith KP, Focia PJ, Chakravarthy S, Landahl EC, Klosowiak JL, Rice SE, Freymann DM. Insight into human Miro1/2 domain organization based on the structure of its N-terminal GTPase. Journal of Structural Biology. 212: 107656. PMID 33132189 DOI: 10.1016/j.jsb.2020.107656   
2020 Croll T, Diederichs K, Fischer F, Fyfe C, Gao Y, Horrell S, Joseph AP, Kandler L, Kippes O, Kirsten F, Müller K, Nolte K, Payne A, Reeves MG, Richardson J, et al. Making the invisible enemy visible. Biorxiv : the Preprint Server For Biology. PMID 33052340 DOI: 10.1101/2020.10.07.307546   
2020 Agarwal S, Smith M, De La Rosa I, Verba KA, Swartz P, Segura-Totten M, Mattos C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallographica. Section D, Structural Biology. 76: 1001-1014. PMID 33021502 DOI: 10.1107/S2059798320011341   
2020 Skolnick J, Gao M. The role of local versus nonlocal physicochemical restraints in determining protein native structure. Current Opinion in Structural Biology. 68: 1-8. PMID 33129066 DOI: 10.1016/   
2020 Oroz J, Félix SS, Cabrita EJ, Laurents DV. Structural transitions in Orb2 prion-like domain relevant for functional aggregation in memory consolidation. The Journal of Biological Chemistry. PMID 33093173 DOI: 10.1074/jbc.RA120.015211   
2020 Marquez-Miranda V, Rojas M, Duarte Y, Diaz-Franulic I, Holmgren M, Cachau RE, Gonzalez-Nilo FD. Analysis of SARS-CoV-2 ORF3a structure reveals chloride binding sites. Biorxiv : the Preprint Server For Biology. PMID 33106803 DOI: 10.1101/2020.10.22.349522   
2020 Hinostroza F, Neely A, Araya-Duran I, Marabolí V, Canan J, Rojas M, Aguayo D, Latorre R, González-Nilo FD, Cárdenas AM. Dynamin-2 R465W mutation induces long range perturbation in highly ordered oligomeric structures. Scientific Reports. 10: 18151. PMID 33097808 DOI: 10.1038/s41598-020-75216-0   
2020 Chashmniam S, Teixeria JMC, Paniagua JC, Pons M. A methionine chemical shift based order parameter characterizing global protein dynamics. Chembiochem : a European Journal of Chemical Biology. PMID 33166021 DOI: 10.1002/cbic.202000701   
2020 Basak S, Kumar A, Ramsey S, Gibbs E, Kapoor A, Filizola M, Chakrapani S. High-resolution structures of multiple 5-HTR-setron complexes reveal a novel mechanism of competitive inhibition. Elife. 9. PMID 33063666 DOI: 10.7554/eLife.57870   
2020 Zong Z, Hao A, Xing P. Supramolecular secondary helical structures in solid-state -protected amino acids. Nanoscale. 12: 20610-20620. PMID 33090165 DOI: 10.1039/d0nr05259k   
2020 Shakya AK, Pratap JV. The coiled-coil domain of glycosomal membrane-associated Leishmania donovani PEX14: cloning, overexpression, purification and preliminary crystallographic analysis. Acta Crystallographica. Section F, Structural Biology Communications. 76: 464-468. PMID 33006573 DOI: 10.1107/S2053230X20011127   
2020 Szabó G, Pénzes K, Torner B, Fagyas M, Tarr T, Soltész P, Kis G, Antal M, Kappelmayer J. Distinct and overlapping effects of β-glycoprotein I conformational variants in ligand interactions and functional assays. Journal of Immunological Methods. 112877. PMID 33031793 DOI: 10.1016/j.jim.2020.112877   
2020 Chen H, Egger M, Xu X, Flemmich L, Krasheninina O, Sun A, Micura R, Ren A. Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Research. PMID 33170270 DOI: 10.1093/nar/gkaa1029   
2020 Santoro AM, D'Urso A, Cunsolo A, Milardi D, Purrello R, Sbardella D, Tundo GR, Diana D, Fattorusso R, Dato AD, Paladino A, Persico M, Coletta M, Fattorusso C. Cooperative Binding of the Cationic Porphyrin Tris-T4 Enhances Catalytic Activity of 20S Proteasome Unveiling a Complex Distribution of Functional States. International Journal of Molecular Sciences. 21. PMID 33003385 DOI: 10.3390/ijms21197190   
2020 Maiti A, Myint W, Delviks-Frankenberry KA, Hou S, Kanai T, Balachandran V, Sierra Rodriguez C, Tripathi R, Kurt Yilmaz N, Pathak VK, Schiffer CA, Matsuo H. Crystal structure of a soluble APOBEC3G variant suggests ssDNA to bind in a channel that extends between the two domains. Journal of Molecular Biology. PMID 33098858 DOI: 10.1016/j.jmb.2020.10.020   
2020 Qi Z, Xu Y, Wang X, Jiang J, Meng F, Zhang Q, Huang B. Structural analysis of toll-like receptor 18 from soiny mullet (Liza haematocheila): Giving insights on the ligand binding mechanism of fish specific TLRs. Fish & Shellfish Immunology. PMID 33098989 DOI: 10.1016/j.fsi.2020.10.024   
2020 Yagi-Utsumi M, Chandak MS, Yanaka S, Hiranyakorn M, Nakamura T, Kato K, Kuwajima K. Residual Structure of Unfolded Ubiquitin as Revealed by Hydrogen/Deuterium-Exchange 2D NMR. Biophysical Journal. PMID 33142107 DOI: 10.1016/j.bpj.2020.10.003   
2020 Bozovic O, Zanobini C, Gulzar A, Jankovic B, Buhrke D, Post M, Wolf S, Stock G, Hamm P. Real-time observation of ligand-induced allosteric transitions in a PDZ domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 33020277 DOI: 10.1073/pnas.2012999117   
2020 Bridges HR, Fedor JG, Blaza JN, Di Luca A, Jussupow A, Jarman OD, Wright JJ, Agip AA, Gamiz-Hernandez AP, Roessler MM, Kaila VRI, Hirst J. Structure of inhibitor-bound mammalian complex I. Nature Communications. 11: 5261. PMID 33067417 DOI: 10.1038/s41467-020-18950-3   
2020 Krah A, van der Hoeven B, Mestrom L, Tonin F, Knobel KCC, Bond PJ, McMillan DGG. A second shell residue modulates a conserved ATP-binding site with radically different affinities for ATP. Biochimica Et Biophysica Acta. General Subjects. 1865: 129766. PMID 33069831 DOI: 10.1016/j.bbagen.2020.129766   
2020 Lai CH, Chang CC, Chuang HC, Tan TH, Lyu PC. Structural Insights into the Active Site Formation of DUSP22 in N-loop-containing Protein Tyrosine Phosphatases. International Journal of Molecular Sciences. 21. PMID 33053837 DOI: 10.3390/ijms21207515   
2020 Yan W, Cheng L, Wang W, Wu C, Yang X, Du X, Ma L, Qi S, Wei Y, Lu Z, Yang S, Shao Z. Structure of the human gonadotropin-releasing hormone receptor GnRH1R reveals an unusual ligand binding mode. Nature Communications. 11: 5287. PMID 33082324 DOI: 10.1038/s41467-020-19109-w   
2020 Rosas-Lemus M, Minasov G, Shuvalova L, Inniss NL, Kiryukhina O, Brunzelle J, Satchell KJF. High-resolution structures of the SARS-CoV-2 2'--methyltransferase reveal strategies for structure-based inhibitor design. Science Signaling. 13. PMID 32994211 DOI: 10.1126/scisignal.abe1202   
2020 Kishk SM, Kishk RM, Yassen ASA, Nafie MS, Nemr NA, ElMasry G, Al-Rejaie S, Simons C. Molecular Insights into Human Transmembrane Protease Serine-2 (TMPS2) Inhibitors against SARS-CoV2: Homology Modelling, Molecular Dynamics, and Docking Studies. Molecules (Basel, Switzerland). 25. PMID 33137894 DOI: 10.3390/molecules25215007   
2020 He HP, Luo M, Cao YL, Lin YX, Zhang H, Zhang X, Ou JY, Yu B, Chen X, Xu M, Feng L, Zeng MS, Zeng YX, Gao S. Structure of Epstein-Barr virus tegument protein complex BBRF2-BSRF1 reveals its potential role in viral envelopment. Nature Communications. 11: 5405. PMID 33106493 DOI: 10.1038/s41467-020-19259-x   
2020 Zhao Y, Zhao Y, Peng B, Zhang L. Dynamic behavior of biomaterials uncovered by cryo-electron microscopy. Combinatorial Chemistry & High Throughput Screening. PMID 33019925 DOI: 10.2174/1386207323666201005100653   
2020 Yao X, Chen C, Wang Y, Dong S, Liu YJ, Li Y, Cui Z, Gong W, Perrett S, Yao L, Lamed R, Bayer EA, Cui Q, Feng Y. Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules. Science Advances. 6. PMID 33097546 DOI: 10.1126/sciadv.abd7182   
2020 Sánchez Rodríguez F, Simpkin AJ, Davies OR, Keegan RM, Rigden DJ. Helical ensembles outperform ideal helices in molecular replacement. Acta Crystallographica. Section D, Structural Biology. 76: 962-970. PMID 33021498 DOI: 10.1107/S205979832001133X   
2020 Silva SRB, de Lima Neto JX, Fuzo CA, Fulco UL, Vieira DS. A quantum biochemistry investigation of the protein-protein interactions for the description of allosteric modulation on biomass-degrading chimera. Physical Chemistry Chemical Physics : Pccp. PMID 33164009 DOI: 10.1039/d0cp04415f   
2020 Ren SM, Liu F, Wu YQ, Chen Q, Zhang ZJ, Yu HL, Xu JH. Identification two key residues at the intersection of domains of a thioether monooxygenase for improving its sulfoxidation performance. Biotechnology and Bioengineering. PMID 33073356 DOI: 10.1002/bit.27604   
2020 Gavira JA, Matilla MA, Fernández M, Krell T. The structural basis for signal promiscuity in a bacterial chemoreceptor. The Febs Journal. PMID 33021055 DOI: 10.1111/febs.15580   
2020 Patel K, Walport LJ, Walshe JL, Solomon PD, Low JKK, Tran DH, Mouradian KS, Silva APG, Wilkinson-White L, Norman A, Franck C, Matthews JM, Guss JM, Payne RJ, Passioura T, et al. Cyclic peptides can engage a single binding pocket through highly divergent modes. Proceedings of the National Academy of Sciences of the United States of America. PMID 33046654 DOI: 10.1073/pnas.2003086117   
2020 Liu B, Zhao C, Xiang Q, Zhao N, Luo Y, Bao R. Structural and biochemical studies of the glycosyltransferase Bs-YjiC from Bacillus subtilis. International Journal of Biological Macromolecules. PMID 33152360 DOI: 10.1016/j.ijbiomac.2020.10.238   
2020 Rowe SJ, Mecaskey RJ, Nasef M, Talton RC, Sharkey RE, Halliday JC, Dunkle JA. Shared requirements for key residues in the antibiotic resistance enzymes ErmC and ErmE suggest a common mode of RNA recognition. The Journal of Biological Chemistry. PMID 33020182 DOI: 10.1074/jbc.RA120.014280   
2020 Mulligan VK, Kang CS, Sawaya MR, Rettie S, Li X, Antselovich I, Craven TW, Watkins AM, Labonte JW, DiMaio F, Yeates TO, Baker D. Computational design of mixed chirality peptide macrocycles with internal symmetry. Protein Science : a Publication of the Protein Society. PMID 33058266 DOI: 10.1002/pro.3974   
2020 Wazir S, Maksimainen MM, Lehtiö L. Multiple crystal forms of human MacroD2. Acta Crystallographica. Section F, Structural Biology Communications. 76: 477-482. PMID 33006575 DOI: 10.1107/S2053230X20011309   
2020 Ghode A, Gross LZF, Tee WV, Guarnera E, Berezovsky IN, Biondi RM, Anand GS. Synergistic Allostery in Multiligand-Protein Interactions. Biophysical Journal. 119: 1833-1848. PMID 33086047 DOI: 10.1016/j.bpj.2020.09.019   
2020 Cai K, Zheng X, Hou Y, Chen F, Yan G, Zhuang D. Deciphering the structural preference encoded in amide-I vibrations of lysine dipeptide in gas phase and in aqueous solution. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 247: 119066. PMID 33091736 DOI: 10.1016/j.saa.2020.119066