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James U. Bowie - Publications

University of California, Los Angeles, Los Angeles, CA 
Protein Structure, Bioenergy

164 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Corin K, Bowie JU. How bilayer properties influence membrane protein folding. Protein Science : a Publication of the Protein Society. PMID 33058341 DOI: 10.1002/pro.3973  0.6
2020 Sherkhanov S, Korman TP, Chan S, Faham S, Liu H, Sawaya MR, Hsu WT, Vikram E, Cheng T, Bowie JU. Isobutanol production freed from biological limits using synthetic biochemistry. Nature Communications. 11: 4292. PMID 32855421 DOI: 10.1038/S41467-020-18124-1  0.76
2020 Valliere MA, Korman TP, Arbing MA, Bowie JU. A bio-inspired cell-free system for cannabinoid production from inexpensive inputs. Nature Chemical Biology. PMID 32839605 DOI: 10.1038/S41589-020-0631-9  0.8
2020 Bowie JU, Sherkhanov S, Korman TP, Valliere MA, Opgenorth PH, Liu H. Synthetic Biochemistry: The Bio-inspired Cell-Free Approach to Commodity Chemical Production. Trends in Biotechnology. PMID 31983463 DOI: 10.1016/J.Tibtech.2019.12.024  0.52
2019 Choi HK, Min D, Kang H, Shon MJ, Rah SH, Kim HC, Jeong H, Choi HJ, Bowie JU, Yoon TY. Watching helical membrane proteins fold reveals a common N-to-C-terminal folding pathway. Science (New York, N.Y.). 366: 1150-1156. PMID 31780561 DOI: 10.1126/Science.Aaw8208  1
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. Author Correction: A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 2363. PMID 31127097 DOI: 10.1038/S41467-019-10436-1  0.52
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 565. PMID 30718485 DOI: 10.1038/S41467-019-08448-Y  0.52
2018 Min D, Jefferson RE, Qi Y, Wang JY, Arbing MA, Im W, Bowie JU. Unfolding of a ClC chloride transporter retains memory of its evolutionary history. Nature Chemical Biology. PMID 29581582 DOI: 10.1038/S41589-018-0025-4  1
2018 Lu P, Min D, DiMaio F, Wei KY, Vahey MD, Boyken SE, Chen Z, Fallas JA, Ueda G, Sheffler W, Mulligan VK, Xu W, Bowie JU, Baker D. Accurate computational design of multipass transmembrane proteins. Science (New York, N.Y.). 359: 1042-1046. PMID 29496880 DOI: 10.1126/Science.Aaq1739  1
2017 Rothé B, Leettola CN, Leal-Esteban L, Cascio D, Fortier S, Isenschmid M, Bowie JU, Constam DB. Crystal Structure of Bicc1 SAM Polymer and Mapping of Interactions between the Ciliopathy-Associated Proteins Bicc1, ANKS3, and ANKS6. Structure (London, England : 1993). PMID 29290488 DOI: 10.1016/J.Str.2017.12.002  0.64
2017 Cao Z, Hutchison JM, Sanders CR, Bowie JU. Backbone hydrogen bond strengths can vary widely in transmembrane helices. Journal of the American Chemical Society. PMID 28692798 DOI: 10.1021/Jacs.7B04819  0.84
2017 Opgenorth PH, Korman TP, Iancu L, Bowie JU. A molecular rheostat maintains ATP levels to drive a synthetic biochemistry system. Nature Chemical Biology. PMID 28671683 DOI: 10.1038/Nchembio.2418  0.52
2017 Jefferson RE, Min D, Corin K, Wang JY, Bowie JU. Applications of single-molecule methods to membrane protein folding studies. Journal of Molecular Biology. PMID 28549924 DOI: 10.1016/J.Jmb.2017.05.021  1
2017 Korman TP, Opgenorth PH, Bowie JU. A synthetic biochemistry platform for cell free production of monoterpenes from glucose. Nature Communications. 8: 15526. PMID 28537253 DOI: 10.1038/Ncomms15526  0.52
2016 Vinokur JM, Cummins MC, Korman TP, Bowie JU. An Adaptation To Life In Acid Through A Novel Mevalonate Pathway. Scientific Reports. 6: 39737. PMID 28004831 DOI: 10.1038/Srep39737  0.52
2016 Min D, Arbing MA, Jefferson RE, Bowie JU. A simple DNA handle attachment method for single molecule mechanical manipulation experiments. Protein Science : a Publication of the Protein Society. PMID 27222403 DOI: 10.1002/Pro.2952  1
2016 Opgenorth PH, Korman TP, Bowie JU. A synthetic biochemistry module for production of bio-based chemicals from glucose. Nature Chemical Biology. PMID 27065234 DOI: 10.1038/Nchembio.2062  0.52
2016 Sherkhanov S, Korman TP, Clarke SG, Bowie JU. Production of FAME biodiesel in E. coli by direct methylation with an insect enzyme. Scientific Reports. 6: 24239. PMID 27053100 DOI: 10.1038/Srep24239  0.52
2016 Spielmann M, Kakar N, Tayebi N, Leettola C, Nürnberg G, Sowada N, Lupiáñez DG, Harabula I, Flöttmann R, Horn D, Chan WL, Wittler L, Yilmaz R, Altmüller J, Thiele H, ... ... Bowie JU, et al. Exome sequencing and CRISPR/Cas genome editing identify mutations of ZAK as a cause of limb defects in humans and mice. Genome Research. PMID 26755636 DOI: 10.1101/Gr.199430.115  0.6
2015 Cheng X, Kim JK, Kim Y, Bowie JU, Im W. Molecular dynamics simulation strategies for protein-micelle complexes. Biochimica Et Biophysica Acta. PMID 26679426 DOI: 10.1016/J.Bbamem.2015.12.012  0.6
2015 Min D, Jefferson RE, Bowie JU, Yoon TY. Mapping the energy landscape for second-stage folding of a single membrane protein. Nature Chemical Biology. PMID 26479439 DOI: 10.1016/J.Bpj.2015.11.1063  1
2015 Woodall NB, Yin Y, Bowie JU. Dual-topology insertion of a dual-topology membrane protein. Nature Communications. 6: 8099. PMID 26306475 DOI: 10.1038/Ncomms9099  1
2015 Nam HJ, Kim I, Bowie JU, Kim S. Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network. Scientific Reports. 5: 9576. PMID 25923201 DOI: 10.1038/Srep09576  1
2015 Vinokur JM, Korman TP, Sawaya MR, Collazo M, Cascio D, Bowie JU. Structural analysis of mevalonate-3-kinase provides insight into the mechanisms of isoprenoid pathway decarboxylases. Protein Science : a Publication of the Protein Society. 24: 212-20. PMID 25422158 DOI: 10.1002/Pro.2607  1
2014 Schlebach JP, Woodall NB, Bowie JU, Park C. Bacteriorhodopsin folds through a poorly organized transition state. Journal of the American Chemical Society. 136: 16574-81. PMID 25369295 DOI: 10.1021/Ja508359N  0.52
2014 Leettola CN, Knight MJ, Cascio D, Hoffman S, Bowie JU. Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3. Bmc Structural Biology. 14: 17. PMID 24998259 DOI: 10.1186/1472-6807-14-17  1
2014 Opgenorth PH, Korman TP, Bowie JU. A synthetic biochemistry molecular purge valve module that maintains redox balance. Nature Communications. 5: 4113. PMID 24936528 DOI: 10.1038/ncomms5113  0.52
2014 Sherkhanov S, Korman TP, Bowie JU. Improving the tolerance of Escherichia coli to medium-chain fatty acid production Metabolic Engineering. 25: 1-7. PMID 24932721 DOI: 10.1016/J.Ymben.2014.06.003  1
2014 Vinokur JM, Korman TP, Cao Z, Bowie JU. Evidence of a novel mevalonate pathway in archaea. Biochemistry. 53: 4161-8. PMID 24914732 DOI: 10.1021/Bi500566Q  1
2014 Korman TP, Sahachartsiri B, Li D, Vinokur JM, Eisenberg D, Bowie JU. A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates. Protein Science : a Publication of the Protein Society. 23: 576-85. PMID 24623472 DOI: 10.1002/Pro.2436  1
2014 Cao Z, Bowie JU. An energetic scale for equilibrium H/D fractionation factors illuminates hydrogen bond free energies in proteins Protein Science. 23: 566-575. PMID 24501090 DOI: 10.1002/Pro.2435  1
2014 Chang YC, Bowie JU. Measuring membrane protein stability under native conditions Proceedings of the National Academy of Sciences of the United States of America. 111: 219-224. PMID 24367094 DOI: 10.1073/Pnas.1318576111  1
2014 Opgenorth PH, Korman TP, Bowie JU. A synthetic biochemistry molecular purge valve module that maintains redox balance Nature Communications. 5. DOI: 10.1038/ncomms5113  1
2014 Schlebach JP, Woodall NB, Bowie JU, Park C. Bacteriorhodopsin folds through a poorly organized transition state Journal of the American Chemical Society. 136: 16574-16581. DOI: 10.1021/ja508359n  1
2013 Jefferson RE, Blois TM, Bowie JU. Membrane proteins can have high kinetic stability Journal of the American Chemical Society. 135: 15183-15190. PMID 24032628 DOI: 10.1021/Ja407232B  1
2013 Hong H, Chang YC, Bowie JU. Measuring transmembrane helix interaction strengths in lipid bilayers using steric trapping. Methods in Molecular Biology (Clifton, N.J.). 1063: 37-56. PMID 23975771 DOI: 10.1007/978-1-62703-583-5_3  1
2013 Korman TP, Sahachartsiri B, Charbonneau DM, Huang GL, Beauregard M, Bowie JU. Dieselzymes: development of a stable and methanol tolerant lipase for biodiesel production by directed evolution. Biotechnology For Biofuels. 6: 70. PMID 23648063 DOI: 10.1186/1754-6834-6-70  0.52
2013 Nam HJ, Han SK, Bowie JU, Kim S. Rampant exchange of the structure and function of extramembrane domains between membrane and water soluble proteins. Plos Computational Biology. 9: e1002997. PMID 23555228 DOI: 10.1371/Journal.Pcbi.1002997  1
2013 Bowie JU. Membrane protein twists and turns Science. 339: 398-399. PMID 23349275 DOI: 10.1126/Science.1228655  1
2013 Korman TP, Sahachartsiri B, Charbonneau DM, Huang GL, Beauregard M, Bowie JU. Dieselzymes: Development of a stable and methanol tolerant lipase for biodiesel production by directed evolution Biotechnology For Biofuels. 6. DOI: 10.1186/1754-6834-6-70  1
2012 Korman TP, Bowie JU. Crystal Structure of Proteus mirabilis Lipase, a Novel Lipase from the Proteus/Psychrophilic Subfamily of Lipase Family I.1 Plos One. 7. PMID 23300806 DOI: 10.1371/Journal.Pone.0052890  1
2012 Kim J, Kim I, Han SK, Bowie JU, Kim S. Network rewiring is an important mechanism of gene essentiality change Scientific Reports. 2. PMID 23198090 DOI: 10.1038/Srep00900  1
2012 Meruelo AD, Han SK, Kim S, Bowie JU. Structural differences between thermophilic and mesophilic membrane proteins Protein Science. 21: 1746-1753. PMID 23001966 DOI: 10.1002/Pro.2157  1
2012 Cao Z, Bowie JU. Shifting hydrogen bonds may produce flexible transmembrane helices Proceedings of the National Academy of Sciences of the United States of America. 109: 8121-8126. PMID 22566663 DOI: 10.1073/Pnas.1201298109  1
2012 Schlebach JP, Cao Z, Bowie JU, Park C. Revisiting the folding kinetics of bacteriorhodopsin Protein Science. 21: 97-106. PMID 22095725 DOI: 10.1002/Pro.766  1
2012 Cao Z, Schlebach JP, Park C, Bowie JU. Thermodynamic stability of bacteriorhodopsin mutants measured relative to the bacterioopsin unfolded state Biochimica Et Biophysica Acta - Biomembranes. 1818: 1049-1054. PMID 21880269 DOI: 10.1016/J.Bbamem.2011.08.019  1
2011 Stafford RL, Hinde E, Knight MJ, Pennella MA, Ear J, Digman MA, Gratton E, Bowie JU. Tandem SAM domain structure of human Caskin1: a presynaptic, self-assembling scaffold for CASK. Structure (London, England : 1993). 19: 1826-36. PMID 22153505 DOI: 10.1016/J.Str.2011.09.018  1
2011 Ujwal R, Bowie JU. Crystallizing membrane proteins using lipidic bicelles Methods. 55: 337-341. PMID 21982781 DOI: 10.1016/J.Ymeth.2011.09.020  1
2011 Knight MJ, Leettola C, Gingery M, Li H, Bowie JU. A human sterile alpha motif domain polymerizome Protein Science. 20: 1697-1706. PMID 21805519 DOI: 10.1002/Pro.703  1
2011 Stafford RL, Ear J, Knight MJ, Bowie JU. The molecular basis of the Caskin1 and Mint1 interaction with CASK Journal of Molecular Biology. 412: 3-13. PMID 21763699 DOI: 10.1016/J.Jmb.2011.07.005  1
2011 Hong H, Bowie JU. Dramatic destabilization of transmembrane helix interactions by features of natural membrane environments. Journal of the American Chemical Society. 133: 11389-98. PMID 21682279 DOI: 10.1021/Ja204524C  1
2011 Meruelo AD, Samish I, Bowie JU. TMKink: A method to predict transmembrane helix kinks Protein Science. 20: 1256-1264. PMID 21563225 DOI: 10.1002/Pro.653  1
2011 Stafford RL, Tang MY, Sawaya MR, Phillips ML, Bowie JU. Crystal structure of the central coiled-coil domain from human liprin-β2 Biochemistry. 50: 3807-3815. PMID 21462929 DOI: 10.1021/Bi200141E  1
2011 Grabrucker AM, Knight MJ, Proepper C, Bockmann J, Joubert M, Rowan M, Nienhaus GU, Garner CC, Bowie JU, Kreutz MR, Gundelfinger ED, Boeckers TM. Concerted action of zinc and ProSAP/Shank in synaptogenesis and synapse maturation. The Embo Journal. 30: 569-81. PMID 21217644 DOI: 10.1038/Emboj.2010.336  1
2011 Schlebach JP, Kim MS, Joh NH, Bowie JU, Park C. Probing membrane protein unfolding with pulse proteolysis Journal of Molecular Biology. 406: 545-551. PMID 21192947 DOI: 10.1016/J.Jmb.2010.12.018  1
2011 Bowie JU. Membrane protein folding: How important are hydrogen bonds? Current Opinion in Structural Biology. 21: 42-49. PMID 21075614 DOI: 10.1016/J.Sbi.2010.10.003  1
2010 Hong H, Blois TM, Cao Z, Bowie JU. Method to measure strong protein-protein interactions in lipid bilayers using a steric trap. Proceedings of the National Academy of Sciences of the United States of America. 107: 19802-7. PMID 21041662 DOI: 10.1073/Pnas.1010348107  1
2010 Knight MJ, Joubert MK, Plotkowski ML, Kropat J, Gingery M, Sakane F, Merchant SS, Bowie JU. Zinc binding drives sheet formation by the SAM domain of diacylglycerol kinase δ. Biochemistry. 49: 9667-76. PMID 20857926 DOI: 10.1021/Bi101261X  1
2010 Di Pietro SM, Cascio D, Feliciano D, Bowie JU, Payne GS. Regulation of clathrin adaptor function in endocytosis: novel role for the SAM domain. The Embo Journal. 29: 1033-44. PMID 20150898 DOI: 10.1038/Emboj.2010.5  1
2010 Ryan CM, Souda P, Bassilian S, Ujwal R, Zhang J, Abramson J, Ping P, Durazo A, Bowie JU, Hasan SS, Baniulis D, Cramer WA, Faull KF, Whitelegge JP. Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation Molecular and Cellular Proteomics. 9: 791-803. PMID 20093275 DOI: 10.1074/Mcp.M900516-Mcp200  1
2009 Oberai A, Joh NH, Pettit FK, Bowie JU. Structural imperatives impose diverse evolutionary constraints on helical membrane proteins Proceedings of the National Academy of Sciences of the United States of America. 106: 17747-17750. PMID 19815527 DOI: 10.1073/Pnas.0906390106  1
2009 Blois TM, Hong H, Kim TH, Bowie JU. Protein unfolding with a steric trap. Journal of the American Chemical Society. 131: 13914-5. PMID 19739627 DOI: 10.1021/Ja905725N  1
2009 Joh NH, Oberai A, Yang D, Whitelegge JP, Bowie JU. Similar energetic contributions of packing in the core of membrane and water-soluble proteins Journal of the American Chemical Society. 131: 10846-10847. PMID 19603754 DOI: 10.1021/Ja904711K  1
2009 Blois TM, Bowie JU. G-protein-coupled receptor structures were not built in a day Protein Science. 18: 1335-1342. PMID 19536805 DOI: 10.1002/Pro.165  1
2009 Hong H, Joh NH, Bowie JU, Tamm LK. Methods for measuring the thermodynamic stability of membrane proteins. Methods in Enzymology. 455: 213-36. PMID 19289208 DOI: 10.1016/S0076-6879(08)04208-0  1
2009 Massey-Gendel E, Zhao A, Boulting G, Kim HY, Balamotis MA, Seligman LM, Nakamoto RK, Bowie JU. Genetic selection system for improving recombinant membrane protein expression in E. coli Protein Science. 18: 372-383. PMID 19165721 DOI: 10.1002/Pro.39  1
2009 Meruelo AD, Bowie JU. Identifying polymer-forming SAM domains. Proteins. 74: 1-5. PMID 18831011 DOI: 10.1002/Prot.22232  1
2009 Faham S, Ujwal R, Abramson J, Bowie JU. Chapter 5 Practical Aspects of Membrane Proteins Crystallization in Bicelles Current Topics in Membranes. 63: 109-125. DOI: 10.1016/S1063-5823(09)63005-2  1
2009 Meruelo AD, Bowie JU. Identifying polymer-forming SAM domains Proteins: Structure, Function and Bioinformatics. 74: 1-5. DOI: 10.1002/prot.22232  1
2008 Joh NH, Min A, Faham S, Whitelegge JP, Yang D, Woods VL, Bowie JU. Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature. 453: 1266-70. PMID 18500332 DOI: 10.1038/Nature06977  1
2008 Harada BT, Knight MJ, Imai Si, Qiao F, Ramachander R, Sawaya MR, Gingery M, Sakane F, Bowie JU. Regulation of Enzyme Localization by Polymerization: Polymer Formation by the SAM Domain of Diacylglycerol Kinase δ1 Structure. 16: 380-387. PMID 18334213 DOI: 10.1016/J.Str.2007.12.017  1
2008 Gorman PM, Kim S, Guo M, Melnyk RA, McLaurin J, Fraser PE, Bowie JU, Chakrabartty A. Dimerization of the transmembrane domain of amyloid precursor proteins and familial Alzheimer's disease mutants. Bmc Neuroscience. 9: 17. PMID 18234110 DOI: 10.1186/1471-2202-9-17  1
2008 Sapra KT, Balasubramanian GP, Labudde D, Bowie JU, Muller DJ. Point mutations in membrane proteins reshape energy landscape and populate different unfolding pathways. Journal of Molecular Biology. 376: 1076-90. PMID 18191146 DOI: 10.1016/J.Jmb.2007.12.027  1
2007 Nauli S, Farr S, Lee YJ, Kim HY, Faham S, Bowie JU. Polymer-driven crystallization Protein Science. 16: 2542-2551. PMID 17962407 DOI: 10.1110/Ps.073074207  1
2007 Plotkowski ML, Kim S, Phillips ML, Partridge AW, Deber CM, Bowie JU. Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction Biochemistry. 46: 12164-12173. PMID 17915947 DOI: 10.1021/Bi701066H  1
2007 Pettit FK, Bare E, Tsai A, Bowie JU. HotPatch: a statistical approach to finding biologically relevant features on protein surfaces. Journal of Molecular Biology. 369: 863-79. PMID 17451744 DOI: 10.1016/J.Jmb.2007.03.036  0.8
2007 Barwe SP, Kim S, Rajasekaran SA, Bowie JU, Rajasekaran AK. Janus Model of The Na,K-ATPase β-Subunit Transmembrane Domain: Distinct Faces Mediate α/β Assembly and β-β Homo-oligomerization Journal of Molecular Biology. 365: 706-714. PMID 17078968 DOI: 10.1016/J.Jmb.2006.10.029  1
2007 Pettit FK, Bare E, Tsai A, Bowie JU. HotPatch: A Statistical A pproach to Finding Biologically Relevant Features on Protein Surfaces Journal of Molecular Biology. 369: 863-879. DOI: 10.1016/j.jmb.2007.03.036  1
2006 Oberai A, Ihm Y, Kim S, Bowie JU. A limited universe of membrane protein families and folds Protein Science. 15: 1723-1734. PMID 16815920 DOI: 10.1110/Ps.062109706  1
2006 Gundelfinger ED, Boeckers TM, Baron MK, Bowie JU. A role for zinc in postsynaptic density asSAMbly and plasticity? Trends in Biochemical Sciences. 31: 366-73. PMID 16793273 DOI: 10.1016/J.Tibs.2006.05.007  1
2006 Bowie JU. Flip-flopping membrane proteins Nature Structural and Molecular Biology. 13: 94-96. PMID 16462808 DOI: 10.1038/Nsmb0206-94  1
2006 Baron MK, Boeckers TM, Vaida B, Faham S, Gingery M, Sawaya MR, Salyer D, Gundelfinger ED, Bowie JU. An architectural framework that may lie at the core of the postsynaptic density. Science (New York, N.Y.). 311: 531-5. PMID 16439662 DOI: 10.1126/Science.1118995  1
2006 Qiao F, Harada B, Song H, Whitelegge J, Courey AJ, Bowie JU. Mae inhibits Pointed-P2 transcriptional activity by blocking its MAPK docking site Embo Journal. 25: 70-79. PMID 16362034 DOI: 10.1038/Sj.Emboj.7600924  1
2005 Bowie JU. Solving the membrane protein folding problem Nature. 438: 581-589. PMID 16319877 DOI: 10.1038/Nature04395  1
2005 Kim S, Jeon TJ, Oberai A, Yang D, Schmidt JJ, Bowie JU. Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins Proceedings of the National Academy of Sciences of the United States of America. 102: 14278-14283. PMID 16179394 DOI: 10.1073/Pnas.0501234102  1
2005 Lorch M, Fahem S, Kaiser C, Weber I, Mason AJ, Bowie JU, Glaubitz C. How to prepare membrane proteins for solid-state NMR: A case study on the α-helical integral membrane protein diacylglycerol kinase from E. coli Chembiochem. 6: 1693-1700. PMID 16138309 DOI: 10.1002/Cbic.200500054  1
2005 Song H, Nie M, Qiao F, Bowie JU, Courey AJ. Antagonistic regulation of Yan nuclear export by Mae and Crm1 may increase the stringency of the Ras response Genes and Development. 19: 1767-1772. PMID 16027171 DOI: 10.1101/Gad.1327405  1
2005 Qiao F, Bowie JU. The many faces of SAM. Science's Stke : Signal Transduction Knowledge Environment. 2005: re7. PMID 15928333 DOI: 10.1126/Stke.2862005Re7  1
2005 Kim CA, Sawaya MR, Cascio D, Kim W, Bowie JU. Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer. The Journal of Biological Chemistry. 280: 27769-75. PMID 15905166 DOI: 10.1074/Jbc.M503055200  1
2005 Faham S, Boulting GL, Massey EA, Yohannan S, Yang D, Bowie JU. Crystallization of bacteriorhodopsin from bicelle formulations at room temperature Protein Science. 14: 836-840. PMID 15689517 DOI: 10.1110/Ps.041167605  1
2005 Bowie JU. Cell biology: Border crossing Nature. 433: 367-369. PMID 15674274 DOI: 10.1038/433367A  1
2005 Edwards MD, Li Y, Kim S, Miller S, Bartlett W, Black S, Dennison S, Iscla I, Blount P, Bowie JU, Booth IR. Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel Nature Structural and Molecular Biology. 12: 113-119. PMID 15665866 DOI: 10.1038/Nsmb895  1
2005 Partridge AW, Liu S, Kim S, Bowie JU, Ginsberg MH. Transmembrane domain helix packing stabilizes integrin αIIbβ3 in the low affinity state Journal of Biological Chemistry. 280: 7294-7300. PMID 15591321 DOI: 10.1074/Jbc.M412701200  1
2004 Ramachander R, Bowie JU. SAM domains can utilize similar surfaces for the formation of polymers and closed oligomers Journal of Molecular Biology. 342: 1353-1358. PMID 15364564 DOI: 10.1016/J.Jmb.2004.08.011  1
2004 Chamberlain AK, Bowie JU. Analysis of side-chain rotamers in transmembrane proteins Biophysical Journal. 87: 3460-3469. PMID 15339811 DOI: 10.1529/Biophysj.104.044024  1
2004 Yohannan S, Yang D, Faham S, Boulting G, Whitelegge J, Bowie JU. Proline substitutions are not easily accommodated in a membrane protein Journal of Molecular Biology. 341: 1-6. PMID 15312757 DOI: 10.1016/J.Jmb.2004.06.025  1
2004 Kim S, Chamberlain AK, Bowie JU. A model of the closed form of the nicotinic acetylcholine receptor M2 channel pore Biophysical Journal. 87: 792-799. PMID 15298888 DOI: 10.1529/Biophysj.103.039396  1
2004 Chamberlain AK, Bowie JU. Asymmetric amino acid compositions of transmembrane β-strands Protein Science. 13: 2270-2274. PMID 15273317 DOI: 10.1110/Ps.04777304  1
2004 Qiao F, Song H, Kim CA, Sawaya MR, Hunter JB, Gingery M, Rebay I, Courey AJ, Bowie JU. Derepression by depolymerization; structural insights into the regulation of Yan by Mae. Cell. 118: 163-73. PMID 15260987 DOI: 10.1016/J.Cell.2004.07.010  1
2004 Chamberlain AK, Lee Y, Kim S, Bowie JU. Snorkeling preferences foster an amino acid composition bias in transmembrane helices Journal of Molecular Biology. 339: 471-479. PMID 15136048 DOI: 10.1016/J.Jmb.2004.03.072  1
2004 Kim S, Chamberlain AK, Bowie JU. Membrane channel structure of Helicobacter pylori vacuolating toxin: Role of multiple GXXXG motifs in cylindrical channels Proceedings of the National Academy of Sciences of the United States of America. 101: 5988-5991. PMID 15067113 DOI: 10.1073/Pnas.0308694101  1
2004 Yamaguchi S, Tuzi S, Bowie JU, Saitô H. Secondary structure and backbone dynamics of Escherichia coli diacylglycerol kinase, as revealed by site-directed solid-state 13C NMR Biochimica Et Biophysica Acta - Proteins and Proteomics. 1698: 97-105. PMID 15063319 DOI: 10.1016/J.Bbapap.2003.10.013  1
2004 Bowie JU. Membrane proteins: A new method enters the fold Proceedings of the National Academy of Sciences of the United States of America. 101: 3995-3996. PMID 15024105 DOI: 10.1073/Pnas.0400671101  1
2004 Yohannan S, Faham S, Yang D, Grosfeld D, Chamberlain AK, Bowie JU. A Cα-H⋯O Hydrogen Bond in a Membrane Protein Is Not Stabilizing Journal of the American Chemical Society. 126: 2284-2285. PMID 14982414 DOI: 10.1021/Ja0317574  1
2004 Melnyk RA, Kim S, Curran AR, Engelman DM, Bowie JU, Deber CM. The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication. The Journal of Biological Chemistry. 279: 16591-7. PMID 14766751 DOI: 10.1074/Jbc.M313936200  1
2004 Yohannan S, Faham S, Yang D, Whitelegge JP, Bowie JU. The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors Proceedings of the National Academy of Sciences of the United States of America. 101: 959-963. PMID 14732697 DOI: 10.1073/Pnas.0306077101  1
2004 Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Research. 32: D449-51. PMID 14681454 DOI: 10.1093/nar/gkh086  1
2004 Faham S, Yang D, Bare E, Yohannan S, Whitelegge JP, Bowie JU. Side-chain contributions to membrane protein structure and stability Journal of Molecular Biology. 335: 297-305. PMID 14659758 DOI: 10.1016/J.Jmb.2003.10.041  1
2003 Kim CA, Bowie JU. SAM domains: Uniform structure, diversity of function Trends in Biochemical Sciences. 28: 625-628. PMID 14659692 DOI: 10.1016/J.Tibs.2003.11.001  1
2003 Rajasekaran SA, Anilkumar G, Oshima E, Bowie JU, Liu H, Heston W, Bander NH, Rajasekaran AK. A Novel Cytoplasmic Tail MXXXL Motif Mediates the Internalization of Prostate-specific Membrane Antigen Molecular Biology of the Cell. 14: 4835-4845. PMID 14528023 DOI: 10.1091/Mbc.E02-11-0731  1
2003 Kim S, Chamberlain AK, Bowie JU. A simple method for modeling transmembrane helix oligomers Journal of Molecular Biology. 329: 831-840. PMID 12787681 DOI: 10.1016/S0022-2836(03)00521-7  1
2003 Partridge AW, Melnyk RA, Yang D, Bowie JU, Deber CM. A transmembrane segment mimic derived from Escherichia coli diacylglycerol kinase inhibits protein activity Journal of Biological Chemistry. 278: 22056-22060. PMID 12686537 DOI: 10.1074/Jbc.M210685200  1
2003 Chamberlain AK, Faham S, Yohannan S, Bowie JU. Construction of helix-bundle membrane proteins Advances in Protein Chemistry. 63: 19-46. PMID 12629965 DOI: 10.1016/S0065-3233(03)63002-0  1
2002 Chamberlain AK, Bowie JU. Evaluation of C-H⋯O hydrogen bonds in native and misfolded proteins Journal of Molecular Biology. 322: 497-503. PMID 12225744 DOI: 10.1016/S0022-2836(02)00785-4  1
2002 Tran HH, Kim CA, Faham S, Siddall MC, Bowie JU. Native interface of the SAM domain polymer of TEL. Bmc Structural Biology [Electronic Resource]. 2: 5. PMID 12193272 DOI: 10.1186/1472-6807-2-5  1
2002 Ramachander R, Kim CA, Phillips ML, Mackereth CD, Thanos CD, McIntosh LP, Bowie JU. Oligomerization-dependent association of the SAM domains from Schizosaccharomyces pombe Byr2 and Ste4 Journal of Biological Chemistry. 277: 39585-39593. PMID 12171939 DOI: 10.1074/Jbc.M207273200  1
2002 Kim CA, Gingery M, Pilpa RM, Bowie JU. The SAM domain of polyhomeotic forms a helical polymer Nature Structural Biology. 9: 453-457. PMID 11992127 DOI: 10.1038/Nsb802  1
2002 Faham S, Bowie JU. Bicelle crystallization: A new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure Journal of Molecular Biology. 316: 1-6. PMID 11829498 DOI: 10.1006/Jmbi.2001.5295  1
2001 Bowie JU. Stabilizing membrane proteins Current Opinion in Structural Biology. 11: 397-402. PMID 11495729 DOI: 10.1016/S0959-440X(00)00223-2  1
2001 Kim CA, Phillips ML, Kim W, Gingery M, Tran HH, Robinson MA, Faham S, Bowie JU. Polymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression Embo Journal. 20: 4173-4182. PMID 11483520 DOI: 10.1093/Emboj/20.15.4173  1
2001 Zhou Y, Lau FW, Nauli S, Yang D, Bowie JU. Inactivation mechanism of the membrane protein diacylglycerol kinase in detergent solution Protein Science. 10: 378-383. PMID 11266623 DOI: 10.1110/Ps.34201  1
2000 Bowie JU. Membrane proteins. Are we destined to repeat history? Editorial overview Current Opinion in Structural Biology. 10: 435-437. PMID 10981631 DOI: 10.1016/S0959-440X(00)00111-1  1
2000 Nagy JK, Lau FW, Bowie JU, Sanders CR. Mapping the oligomeric interface of diacylglycerol kinase by engineered thiol cross-linking: Homologous sites in the transmembrane domain Biochemistry. 39: 4154-4164. PMID 10747807 DOI: 10.1021/Bi991781N  1
2000 Zhou Y, Bowie JU. Building a thermostable membrane protein Journal of Biological Chemistry. 275: 6975-6979. PMID 10702260 DOI: 10.1074/Jbc.275.10.6975  1
2000 Bowie JU. Understanding membrane protein structure by design Nature Structural Biology. 7: 91-94. PMID 10655604 DOI: 10.1038/72454  1
1999 Bowie JU. Helix-bundle membrane protein fold templates. Protein Science : a Publication of the Protein Society. 8: 2711-9. PMID 10631987 DOI: 10.1110/Ps.8.12.2711  1
1999 Thanos CD, Faham S, Goodwill KE, Cascio D, Phillips M, Bowie JU. Monomeric structure of the human EphB2 sterile alpha motif domain. The Journal of Biological Chemistry. 274: 37301-6. PMID 10601296 DOI: 10.1074/Jbc.274.52.37301  1
1999 Thanos CD, Bowie JU. p53 Family members p63 and p73 are SAM domain-containing proteins. Protein Science : a Publication of the Protein Society. 8: 1708-10. PMID 10452616 DOI: 10.1110/Ps.8.8.1708  1
1999 Lau FW, Nauli S, Zhou Y, Bowie JU. Changing single side-chains can greatly enhance the resistance of a membrane protein to irreversible inactivation. Journal of Molecular Biology. 290: 559-64. PMID 10390353 DOI: 10.1006/Jmbi.1999.2905  1
1999 Lau FW, Chen X, Bowie JU. Active sites of diacylglycerol kinase from Escherichia coli are shared between subunits. Biochemistry. 38: 5521-7. PMID 10220339 DOI: 10.1021/Bi982763T  1
1999 Thanos CD, Goodwill KE, Bowie JU. Oligomeric structure of the human EphB2 receptor SAM domain. Science (New York, N.Y.). 283: 833-6. PMID 9933164 DOI: 10.1126/Science.283.5403.833  1
1999 Pettit FK, Bowie JU. Protein surface roughness and small molecular binding sites. Journal of Molecular Biology. 285: 1377-82. PMID 9917382 DOI: 10.1006/Jmbi.1998.2411  1
1997 Zhou Y, Wen J, Bowie JU. A passive transmembrane helix. Nature Structural Biology. 4: 986-90. PMID 9406546 DOI: 10.1038/Nsb1297-986  1
1997 Eisenberg D, Lüthy R, Bowie JU. VERIFY3D: assessment of protein models with three-dimensional profiles. Methods in Enzymology. 277: 396-404. PMID 9379925 DOI: 10.1016/S0076-6879(97)77022-8  1
1997 Bowie JU. Helix packing in membrane proteins. Journal of Molecular Biology. 272: 780-9. PMID 9368657 DOI: 10.1006/Jmbi.1997.1279  1
1997 Bowie JU. Helix packing angle preferences. Nature Structural Biology. 4: 915-7. PMID 9360607 DOI: 10.1038/Nsb1197-915  1
1997 Lau FW, Bowie JU. A method for assessing the stability of a membrane protein. Biochemistry. 36: 5884-92. PMID 9153430 DOI: 10.1021/Bi963095J  1
1997 Bowie JU, Lau FW, Zhou Wen Y, Chen C. Membrane proteins take a licking and keep on ticking Faseb Journal. 11: A1037.  1
1996 Thanos CD, Bowie JU. Developmentally expressed myosin heavy-chain kinase possesses a diacylglycerol kinase domain. Protein Science : a Publication of the Protein Society. 5: 782-5. PMID 8845769 DOI: 10.1002/Pro.5560050424  1
1996 Bowie JU, Zhang K, Wilmanns M, Eisenberg D. Three-dimensional profiles for measuring compatibility of amino acid sequence with three-dimensional structure. Methods in Enzymology. 266: 598-616. PMID 8743708 DOI: 10.1016/S0076-6879(96)66037-6  1
1996 Fischer D, Rice D, Bowie JU, Eisenberg D. Assigning amino acid sequences to 3-dimensional protein folds. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 126-36. PMID 8566533 DOI: 10.1096/Fasebj.10.1.8566533  1
1996 Wen J, Chen X, Bowie JU. Exploring the allowed sequence space of a membrane protein. Nature Structural Biology. 3: 141-8. PMID 8564540 DOI: 10.1038/Nsb0296-141  1
1995 Bowie JU, Pakula AA, Simon MI. The three-dimensional structure of the aspartate receptor from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 51: 145-54. PMID 15299315 DOI: 10.1107/S0907444994010498  1
1994 Bowie JU, Eisenberg D. An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function. Proceedings of the National Academy of Sciences of the United States of America. 91: 4436-40. PMID 8183927 DOI: 10.1073/Pnas.91.10.4436  1
1993 Bowie JU, Eisenberg D. Inverted protein structure prediction Current Opinion in Structural Biology. 3: 437-444. DOI: 10.1016/S0959-440X(05)80118-6  1
1992 Lüthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature. 356: 83-5. PMID 1538787 DOI: 10.1038/356083A0  1
1992 Eisenberg D, Bowie JU, Lüthy R, Choe S. Three-dimensional profiles for analysing protein sequence-structure relationships. Faraday Discussions. 25-34. PMID 1290936 DOI: 10.1039/Fd9929300025  1
1991 Bowie JU, Lüthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science (New York, N.Y.). 253: 164-70. PMID 1853201  1
1991 Mossing MC, Bowie JU, Sauer RT. A streptomycin selection for DNA-binding activity. Methods in Enzymology. 208: 604-19. PMID 1838136 DOI: 10.1016/0076-6879(91)08031-C  1
1991 Reidhaar-Olson JF, Bowie JU, Breyer RM, Hu JC, Knight KL, Lim WA, Mossing MC, Parsell DA, Shoemaker KR, Sauer RT. Random mutagenesis of protein sequences using oligonucleotide cassettes. Methods in Enzymology. 208: 564-86. PMID 1779849 DOI: 10.1016/0076-6879(91)08029-H  1
1990 Bowie JU, Reidhaar-Olson JF, Lim WA, Sauer RT. Deciphering the message in protein sequences: tolerance to amino acid substitutions. Science (New York, N.Y.). 247: 1306-10. PMID 2315699 DOI: 10.1126/Science.2315699  1
1990 Bowie JU, Sauer RT. TraY proteins of F and related episomes are members of the Arc and Mnt repressor family. Journal of Molecular Biology. 211: 5-6. PMID 2299672 DOI: 10.1016/0022-2836(90)90004-6  1
1990 Brown BM, Bowie JU, Sauer RT. Arc repressor is tetrameric when bound to operator DNA. Biochemistry. 29: 11189-95. PMID 2271706 DOI: 10.1021/Bi00503A006  1
1990 Bowie JU, Clarke ND, Pabo CO, Sauer RT. Identification of protein folds: matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures. Proteins. 7: 257-64. PMID 2163535 DOI: 10.1002/Prot.340070307  1
1989 Bowie JU, Sauer RT. Identifying determinants of folding and activity for a protein of unknown structure. Proceedings of the National Academy of Sciences of the United States of America. 86: 2152-6. PMID 2928323 DOI: 10.1073/Pnas.86.7.2152  1
1989 Knight KL, Bowie JU, Vershon AK, Kelley RD, Sauer RT. The Arc and Mnt repressors. A new class of sequence-specific DNA-binding protein. The Journal of Biological Chemistry. 264: 3639-42. PMID 2917965  1
1989 Bowie JU, Sauer RT. Equilibrium dissociation and unfolding of the Arc repressor dimer. Biochemistry. 28: 7139-43. PMID 2819054 DOI: 10.1021/Bi00444A001  1
1989 Bowie JU, Sauer RT. Identification of C-terminal extensions that protect proteins from intracellular proteolysis. The Journal of Biological Chemistry. 264: 7596-602. PMID 2651443  1
1989 Zagorski MG, Bowie JU, Vershon AK, Sauer RT, Patel DJ. NMR studies of Arc repressor mutants: proton assignments, secondary structure, and long-range contacts for the thermostable proline-8----leucine variant of Arc. Biochemistry. 28: 9813-25. PMID 2611267 DOI: 10.1021/Bi00451A041  1
1986 Vershon AK, Bowie JU, Karplus TM, Sauer RT. Isolation and analysis of arc repressor mutants: evidence for an unusual mechanism of DNA binding. Proteins. 1: 302-11. PMID 3449859 DOI: 10.1002/Prot.340010404  1
1984 Bowie JU, Gray GR. Synthesis and mass spectra of the partially methylated and partially ethylated anhydro-D-mannitol acetates derived by reductive cleavage of permethylated and perethylated Saccharomyces cerevisiae D-mannans. Carbohydrate Research. 129: 87-97. PMID 6432323 DOI: 10.1016/0008-6215(84)85301-X  1
1984 Bowie JU, Trescony PV, Gray GR. Analysis of linkage positions in Saccharomyces cerevisiae D-mannans by the reductive-cleavage method. Carbohydrate Research. 125: 301-7. PMID 6367979 DOI: 10.1016/0008-6215(84)85165-4  1
1984 Wright CD, Bowie JU, Nelson RD. Influence of yeast mannan on release of myeloperoxidase by human neutrophils: determination of structural features of mannan required for formation of myeloperoxidase-mannan-neutrophil complexes. Infection and Immunity. 43: 467-71. PMID 6319284 DOI: 10.1128/Iai.43.2.467-471.1984  1
1983 Wright CD, Bowie JU, Gray GR, Nelson RD. Candidacidal activity of myeloperoxidase: mechanisms of inhibitory influence of soluble cell wall mannan. Infection and Immunity. 42: 76-80. PMID 6311754 DOI: 10.1128/Iai.42.1.76-80.1983  1
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