David Eisenberg - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 
Area:
protein interactions
Website:
http://www.chemistry.ucla.edu/directory/eisenberg-david-s

334 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Bowler JT, Sawaya MR, Boyer DR, Cascio D, Bali M, Eisenberg DS. Micro-electron diffraction structure of the aggregation-driving N-terminus of Drosophila neuronal protein Orb2A reveals amyloid-like β-sheets. The Journal of Biological Chemistry. 102396. PMID 35988647 DOI: 10.1016/j.jbc.2022.102396  0.329
2022 Murray KA, Hu CJ, Griner SL, Pan H, Bowler JT, Abskharon R, Rosenberg GM, Cheng X, Seidler PM, Eisenberg DS. De novo designed protein inhibitors of amyloid aggregation and seeding. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206240119. PMID 35969734 DOI: 10.1073/pnas.2206240119  0.301
2022 Murray KA, Evans D, Hughes MP, Sawaya MR, Hu CJ, Houk KN, Eisenberg D. Extended β-Strands Contribute to Reversible Amyloid Formation. Acs Nano. PMID 35132852 DOI: 10.1021/acsnano.1c08043  0.447
2021 Hughes MP, Goldschmidt L, Eisenberg DS. Prevalence and species distribution of the low-complexity, amyloid-like, reversible, kinked segment (LARKS) structural motif in amyloid-like fibrils. The Journal of Biological Chemistry. 101194. PMID 34537246 DOI: 10.1016/j.jbc.2021.101194  0.645
2021 Sawaya MR, Hughes MP, Rodriguez JA, Riek R, Eisenberg DS. The expanding amyloid family: Structure, stability, function, and pathogenesis. Cell. 184: 4857-4873. PMID 34534463 DOI: 10.1016/j.cell.2021.08.013  0.363
2020 Lu J, Cao Q, Hughes MP, Sawaya MR, Boyer DR, Cascio D, Eisenberg DS. CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid. Nature Communications. 11: 4090. PMID 32796831 DOI: 10.1038/S41467-020-17905-Y  0.334
2020 Glynn C, Sawaya MR, Ge P, Gallagher-Jones M, Short CW, Bowman R, Apostol M, Zhou ZH, Eisenberg DS, Rodriguez JA. Cryo-EM structure of a human prion fibril with a hydrophobic, protease-resistant core. Nature Structural & Molecular Biology. PMID 32284600 DOI: 10.1038/S41594-020-0403-Y  0.781
2019 Lu J, Cao Q, Wang C, Zheng J, Luo F, Xie J, Li Y, Ma X, He L, Eisenberg D, Nowick J, Jiang L, Li D. Structure-Based Peptide Inhibitor Design of Amyloid-β Aggregation. Frontiers in Molecular Neuroscience. 12: 54. PMID 30886570 DOI: 10.3389/Fnmol.2019.00054  0.356
2019 Thiex N, Carlson M, Kieffer R, Kieffer A, Eisenberg D, Barashkov N, Ramsey C. Evaluation of the Use of Microtracers™ in a Proficiency Testing Program. Journal of Aoac International. PMID 30651161 DOI: 10.5740/jaoacint.18-0354  0.627
2018 Tuukkanen AT, Freire D, Chan S, Arbing MA, Reed RW, Evans TJ, Zenkeviciutė G, Kim J, Kahng S, Sawaya MR, Chaton CT, Wilmanns M, Eisenberg D, Parret AHA, Korotkov KV. Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3 and ESX-5 Type VII Secretion Systems. Journal of Molecular Biology. PMID 30419243 DOI: 10.1016/J.Jmb.2018.11.003  0.402
2018 Guenther EL, Cao Q, Trinh H, Lu J, Sawaya MR, Cascio D, Boyer DR, Rodriguez JA, Hughes MP, Eisenberg DS. Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation. Nature Structural & Molecular Biology. PMID 29786080 DOI: 10.1038/S41594-018-0064-2  0.322
2018 Saelices L, Sievers SA, Sawaya MR, Eisenberg DS. Crystal Structures of Amyloidogenic Segments of Human Transthyretin. Protein Science : a Publication of the Protein Society. PMID 29626847 DOI: 10.1002/Pro.3420  0.759
2018 Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Zhou ZH, Eisenberg DS. Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2. Nature Structural & Molecular Biology. PMID 29531287 DOI: 10.1038/S41594-018-0045-5  0.311
2018 Sangwan S, Sawaya MR, Murray KA, Hughes M, Eisenberg DS. Atomic structures of corkscrew-forming segments of SOD1 reveal varied oligomer conformations. Protein Science : a Publication of the Protein Society. PMID 29453800 DOI: 10.1002/Pro.3391  0.374
2018 Hughes MP, Sawaya MR, Boyer DR, Goldschmidt L, Rodriguez JA, Cascio D, Chong L, Gonen T, Eisenberg DS. Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks. Science (New York, N.Y.). 359: 698-701. PMID 29439243 DOI: 10.1126/Science.Aan6398  0.628
2018 Gallagher-Jones M, Glynn C, Boyer DR, Martynowycz MW, Hernandez E, Miao J, Zee CT, Novikova IV, Goldschmidt L, McFarlane HT, Helguera GF, Evans JE, Sawaya MR, Cascio D, Eisenberg DS, et al. Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp. Nature Structural & Molecular Biology. PMID 29335561 DOI: 10.2210/Pdb6Axz/Pdb  0.803
2017 Hanczyc P, Mikhailovsky AA, Boyer DR, Sawaya MR, Heeger AJ, Eisenberg D. Ultrafast Time-Resolved Studies on Fluorescein for Recognition Strands Architecture in Amyloid Fibrils. The Journal of Physical Chemistry. B. PMID 29237120 DOI: 10.1021/Acs.Jpcb.7B07923  0.431
2017 Sangwan S, Zhao A, Adams KL, Jayson CK, Sawaya MR, Guenther EL, Pan AC, Ngo J, Moore DM, Soriaga AB, Do TD, Goldschmidt L, Nelson R, Bowers MT, Koehler CM, ... ... Eisenberg DS, et al. Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS). Proceedings of the National Academy of Sciences of the United States of America. PMID 28760994 DOI: 10.1073/Pnas.1705091114  0.807
2017 de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T. Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED. Nature Methods. PMID 28192420 DOI: 10.1038/Nmeth.4178  0.355
2017 Eisenberg DS, Sawaya MR. Structural Studies of Amyloid Proteins at the Molecular Level. Annual Review of Biochemistry. PMID 28125289 DOI: 10.1146/Annurev-Biochem-061516-045104  0.378
2016 Riek R, Eisenberg DS. The activities of amyloids from a structural perspective. Nature. 539: 227-235. PMID 27830791 DOI: 10.1038/Nature20416  0.323
2016 Colletier JP, Sawaya MR, Gingery M, Rodriguez JA, Cascio D, Brewster AS, Michels-Clark T, Hice RH, Coquelle N, Boutet S, Williams GJ, Messerschmidt M, DePonte DP, Sierra RG, Laksmono H, ... ... Eisenberg DS, et al. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature. PMID 27680699 DOI: 10.1038/Nature19825  0.521
2016 Yin JX, Maalouf M, Han P, Zhao M, Gao M, Dharshaun T, Ryan C, Whitelegge J, Wu J, Eisenberg D, Reiman EM, Schweizer FE, Shi J. Ketones block amyloid entry and improve cognition in an Alzheimer's model. Neurobiology of Aging. 39: 25-37. PMID 26923399 DOI: 10.1016/J.Neurobiolaging.2015.11.018  0.606
2016 Wagner JM, Chan S, Evans TJ, Kahng S, Kim J, Arbing MA, Eisenberg D, Korotkov KV. Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system. Bmc Structural Biology. 16: 5. PMID 26922638 DOI: 10.1186/S12900-016-0056-6  0.33
2016 Moshe A, Landau M, Eisenberg D. Preparation of Crystalline Samples of Amyloid Fibrils and Oligomers. Methods in Molecular Biology (Clifton, N.J.). 1345: 201-10. PMID 26453214 DOI: 10.1007/978-1-4939-2978-8_13  0.453
2015 Soragni A, Janzen DM, Johnson LM, Lindgren AG, Thai-Quynh Nguyen A, Tiourin E, Soriaga AB, Lu J, Jiang L, Faull KF, Pellegrini M, Memarzadeh S, Eisenberg DS. A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas. Cancer Cell. PMID 26748848 DOI: 10.1016/J.Ccell.2015.12.002  0.77
2015 Do TD, LaPointe NE, Nelson R, Krotee P, Hayden EY, Ulrich B, Quan S, Feinstein SC, Teplow DB, Eisenberg D, Shea JE, Bowers MT. Amyloid β-Protein C-terminal Fragments: Formation of Cylindrins and β-barrels. Journal of the American Chemical Society. PMID 26700445 DOI: 10.1021/Jacs.5B09536  0.574
2015 Soriaga AB, Sangwan S, Macdonald R, Sawaya MR, Eisenberg D. Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. The Journal of Physical Chemistry. B. PMID 26629790 DOI: 10.1021/Acs.Jpcb.5B09981  0.826
2015 Soragni A, Yousefi S, Stoeckle C, Soriaga AB, Sawaya MR, Kozlowski E, Schmid I, Radonjic-Hoesli S, Boutet S, Williams GJ, Messerschmidt M, Seibert MM, Cascio D, Zatsepin NA, Burghammer M, ... ... Eisenberg DS, et al. Toxicity of eosinophil MBP is repressed by intracellular crystallization and promoted by extracellular aggregation. Molecular Cell. 57: 1011-21. PMID 25728769 DOI: 10.1016/J.Molcel.2015.01.026  0.79
2015 Kurt TD, Jiang L, Fernández-Borges N, Bett C, Liu J, Yang T, Spraker TR, Castilla J, Eisenberg D, Kong Q, Sigurdson CJ. Human prion protein sequence elements impede cross-species chronic wasting disease transmission. The Journal of Clinical Investigation. 125: 1485-96. PMID 25705888 DOI: 10.1172/Jci79408  0.308
2015 Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK. Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns. Acta Crystallographica. Section D, Biological Crystallography. 71: 357-66. PMID 25664747 DOI: 10.1107/S1399004714026145  0.785
2014 Li D, Jones EM, Sawaya MR, Furukawa H, Luo F, Ivanova M, Sievers SA, Wang W, Yaghi OM, Liu C, Eisenberg DS. Structure-based design of functional amyloid materials. Journal of the American Chemical Society. 136: 18044-51. PMID 25474758 DOI: 10.1021/Ja509648U  0.706
2014 Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier JP, Messerschmidt MM, Boutet S, Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, ... ... Eisenberg DS, et al. Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam. Proceedings of the National Academy of Sciences of the United States of America. 111: 12769-74. PMID 25136092 DOI: 10.1073/Pnas.1413456111  0.561
2014 Hochberg GK, Ecroyd H, Liu C, Cox D, Cascio D, Sawaya MR, Collier MP, Stroud J, Carver JA, Baldwin AJ, Robinson CV, Eisenberg DS, Benesch JL, Laganowsky A. The structured core domain of αB-crystallin can prevent amyloid fibrillation and associated toxicity. Proceedings of the National Academy of Sciences of the United States of America. 111: E1562-70. PMID 24711386 DOI: 10.1073/Pnas.1322673111  0.358
2014 Korman TP, Sahachartsiri B, Li D, Vinokur JM, Eisenberg D, Bowie JU. A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates. Protein Science : a Publication of the Protein Society. 23: 576-85. PMID 24623472 DOI: 10.1002/Pro.2436  0.755
2014 Kurt TD, Jiang L, Bett C, Eisenberg D, Sigurdson CJ. A proposed mechanism for the promotion of prion conversion involving a strictly conserved tyrosine residue in the β2-α2 loop of PrPC. The Journal of Biological Chemistry. 289: 10660-7. PMID 24596090 DOI: 10.1074/Jbc.M114.549030  0.339
2014 Goldschmidt L, Eisenberg D, Derewenda ZS. Salvage or recovery of failed targets by mutagenesis to reduce surface entropy. Methods in Molecular Biology (Clifton, N.J.). 1140: 201-9. PMID 24590720 DOI: 10.1007/978-1-4939-0354-2_16  0.609
2014 Ivanova MI, Sievers SA, Guenther EL, Johnson LM, Winkler DD, Galaleldeen A, Sawaya MR, Hart PJ, Eisenberg DS. Aggregation-triggering segments of SOD1 fibril formation support a common pathway for familial and sporadic ALS. Proceedings of the National Academy of Sciences of the United States of America. 111: 197-201. PMID 24344300 DOI: 10.1073/Pnas.1320786110  0.747
2014 Eisenberg D, Laganowsky A, Liu C, Sawaya M, Whitelegge J, Zhao M, Soriaga A, Landau M, Teng P, Cascio D, Jiang L, Sievers S, Soragni A. Structural Studies of the Amyloid State of Proteins Acta Crystallographica Section a Foundations and Advances. 70: C797-C797. DOI: 10.1107/S205327331409202X  0.832
2013 Arbing MA, Chan S, Harris L, Kuo E, Zhou TT, Ahn CJ, Nguyen L, He Q, Lu J, Menchavez PT, Shin A, Holton T, Sawaya MR, Cascio D, Eisenberg D. Heterologous expression of mycobacterial Esx complexes in Escherichia coli for structural studies is facilitated by the use of maltose binding protein fusions. Plos One. 8: e81753. PMID 24312350 DOI: 10.1371/Journal.Pone.0081753  0.378
2013 Jiang L, Liu C, Leibly D, Landau M, Zhao M, Hughes MP, Eisenberg DS. Structure-based discovery of fiber-binding compounds that reduce the cytotoxicity of amyloid beta. Elife. 2: e00857. PMID 23878726 DOI: 10.7554/Elife.00857  0.592
2013 Jiang L, Eisenberg D. Structure-Based Approaches to Amyloid Inhibitors Biophysical Journal. 104: 36a. DOI: 10.1016/J.Bpj.2012.11.236  0.377
2012 Liu C, Zhao M, Jiang L, Cheng PN, Park J, Sawaya MR, Pensalfini A, Gou D, Berk AJ, Glabe CG, Nowick J, Eisenberg D. Out-of-register β-sheets suggest a pathway to toxic amyloid aggregates. Proceedings of the National Academy of Sciences of the United States of America. 109: 20913-8. PMID 23213214 DOI: 10.1073/Pnas.1218792109  0.758
2012 Cheng PN, Liu C, Zhao M, Eisenberg D, Nowick JS. Amyloid β-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity. Nature Chemistry. 4: 927-33. PMID 23089868 DOI: 10.1038/Nchem.1433  0.682
2012 Min AB, Miallau L, Sawaya MR, Habel J, Cascio D, Eisenberg D. The crystal structure of the Rv0301-Rv0300 VapBC-3 toxin-antitoxin complex from M. tuberculosis reveals a Mg²⁺ ion in the active site and a putative RNA-binding site. Protein Science : a Publication of the Protein Society. 21: 1754-67. PMID 23011806 DOI: 10.1002/Pro.2161  0.622
2012 Gallat FX, Laganowsky A, Wood K, Gabel F, van Eijck L, Wuttke J, Moulin M, Härtlein M, Eisenberg D, Colletier JP, Zaccai G, Weik M. Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins. Biophysical Journal. 103: 129-36. PMID 22828339 DOI: 10.1016/J.Bpj.2012.05.027  0.375
2012 Kato M, Han TW, Xie S, Shi K, Du X, Wu LC, Mirzaei H, Goldsmith EJ, Longgood J, Pei J, Grishin NV, Frantz DE, Schneider JW, Chen S, Li L, ... ... Eisenberg D, et al. Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell. 149: 753-67. PMID 22579281 DOI: 10.1016/J.Cell.2012.04.017  0.341
2012 Stroud JC, Liu C, Teng PK, Eisenberg D. Toxic fibrillar oligomers of amyloid-β have cross-β structure. Proceedings of the National Academy of Sciences of the United States of America. 109: 7717-22. PMID 22547798 DOI: 10.1073/Pnas.1203193109  0.658
2012 Eisenberg D, Jucker M. The amyloid state of proteins in human diseases. Cell. 148: 1188-203. PMID 22424229 DOI: 10.1016/J.Cell.2012.02.022  0.385
2012 Laganowsky A, Liu C, Sawaya MR, Whitelegge JP, Park J, Zhao M, Pensalfini A, Soriaga AB, Landau M, Teng PK, Cascio D, Glabe C, Eisenberg D. Atomic view of a toxic amyloid small oligomer. Science (New York, N.Y.). 335: 1228-31. PMID 22403391 DOI: 10.1126/Science.1213151  0.828
2012 Teng PK, Anderson NJ, Goldschmidt L, Sawaya MR, Sambashivan S, Eisenberg D. Ribonuclease A suggests how proteins self-chaperone against amyloid fiber formation. Protein Science : a Publication of the Protein Society. 21: 26-37. PMID 22095666 DOI: 10.1002/Pro.754  0.805
2012 Zheng J, Liu C, Sawaya MR, Vadla B, Khan S, Woods RJ, Eisenberg D, Goux WJ, Nowick JS. Correction to Macrocyclic β-Sheet Peptides That Inhibit the Aggregation of a Tau-Protein-Derived Hexapeptide Journal of the American Chemical Society. 134: 17832-17832. DOI: 10.1021/Ja308086H  0.362
2012 Eisenberg D, Quimby JM, Ho D, Lavi R, Benisvy L, Scott LT, Shenhar R. Special Electronic Structure and Extended Supramolecular Oligomerization of Anionic 1,4-Dicorannulenylbenzene (Eur. J. Org. Chem. 32/2012) European Journal of Organic Chemistry. 2012: n/a-n/a. DOI: 10.1002/Ejoc.201290087  0.313
2011 Colletier JP, Laganowsky A, Landau M, Zhao M, Soriaga AB, Goldschmidt L, Flot D, Cascio D, Sawaya MR, Eisenberg D. Molecular basis for amyloid-beta polymorphism. Proceedings of the National Academy of Sciences of the United States of America. 108: 16938-43. PMID 21949245 DOI: 10.1073/Pnas.1112600108  0.811
2011 Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, ... ... Eisenberg D, et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nature Methods. 8: 528-9. PMID 21716279 DOI: 10.1038/Nmeth.1637  0.317
2011 Landau M, Sawaya MR, Faull KF, Laganowsky A, Jiang L, Sievers SA, Liu J, Barrio JR, Eisenberg D. Towards a pharmacophore for amyloid. Plos Biology. 9: e1001080. PMID 21695112 DOI: 10.1371/Journal.Pbio.1001080  0.76
2011 Sievers SA, Karanicolas J, Chang HW, Zhao A, Jiang L, Zirafi O, Stevens JT, Münch J, Baker D, Eisenberg D. Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation. Nature. 475: 96-100. PMID 21677644 DOI: 10.1038/Nature10154  0.823
2011 Liu C, Sawaya MR, Cheng PN, Zheng J, Nowick JS, Eisenberg D. Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics. Journal of the American Chemical Society. 133: 6736-44. PMID 21473620 DOI: 10.1021/Ja200222N  0.431
2011 Zhao M, Cascio D, Sawaya MR, Eisenberg D. Structures of segments of α-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation. Protein Science : a Publication of the Protein Society. 20: 996-1004. PMID 21462277 DOI: 10.1002/Pro.630  0.692
2011 Apostol MI, Wiltzius JJ, Sawaya MR, Cascio D, Eisenberg D. Atomic structures suggest determinants of transmission barriers in mammalian prion disease. Biochemistry. 50: 2456-63. PMID 21323366 DOI: 10.1021/Bi101803K  0.795
2011 Zheng J, Liu C, Sawaya MR, Vadla B, Khan S, Woods RJ, Eisenberg D, Goux WJ, Nowick JS. Macrocyclic β-sheet peptides that inhibit the aggregation of a tau-protein-derived hexapeptide. Journal of the American Chemical Society. 133: 3144-57. PMID 21319744 DOI: 10.1021/Ja110545H  0.357
2011 Chim N, Habel JE, Johnston JM, Krieger I, Miallau L, Sankaranarayanan R, Morse RP, Bruning J, Swanson S, Kim H, Kim CY, Li H, Bulloch EM, Payne RJ, Manos-Turvey A, ... ... Eisenberg DS, et al. The TB Structural Genomics Consortium: a decade of progress. Tuberculosis (Edinburgh, Scotland). 91: 155-72. PMID 21247804 DOI: 10.1016/J.Tube.2010.11.009  0.64
2011 Liu C, Sawaya MR, Eisenberg D. β₂-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages. Nature Structural & Molecular Biology. 18: 49-55. PMID 21131979 DOI: 10.1038/Nsmb.1948  0.399
2011 Maalouf M, Schweizer F, Zhao M, Eisenberg D. P4-264: Enhancing mitochondrial function with the ketones acetoacetate and β-hydroxybutyrate alleviates soluble Aβ42 toxicity Alzheimer's & Dementia. 7: S798-S798. DOI: 10.1016/J.Jalz.2011.05.2301  0.571
2010 Apostol MI, Sawaya MR, Cascio D, Eisenberg D. Crystallographic studies of prion protein (PrP) segments suggest how structural changes encoded by polymorphism at residue 129 modulate susceptibility to human prion disease. The Journal of Biological Chemistry. 285: 29671-5. PMID 20685658 DOI: 10.1074/Jbc.C110.158303  0.781
2010 Khakshoor O, Lin AJ, Korman TP, Sawaya MR, Tsai SC, Eisenberg D, Nowick JS. X-ray crystallographic structure of an artificial beta-sheet dimer. Journal of the American Chemical Society. 132: 11622-8. PMID 20669960 DOI: 10.1021/Ja103438W  0.765
2010 Laganowsky A, Eisenberg D. Non-3D domain swapped crystal structure of truncated zebrafish alphaA crystallin. Protein Science : a Publication of the Protein Society. 19: 1978-84. PMID 20669149 DOI: 10.1002/Pro.471  0.381
2010 Arbing MA, Kaufmann M, Phan T, Chan S, Cascio D, Eisenberg D. The crystal structure of the Mycobacterium tuberculosis Rv3019c-Rv3020c ESX complex reveals a domain-swapped heterotetramer. Protein Science : a Publication of the Protein Society. 19: 1692-703. PMID 20629176 DOI: 10.1002/Pro.451  0.382
2010 Ostapchenko VG, Sawaya MR, Makarava N, Savtchenko R, Nilsson KP, Eisenberg D, Baskakov IV. Two amyloid States of the prion protein display significantly different folding patterns. Journal of Molecular Biology. 400: 908-21. PMID 20553730 DOI: 10.1016/J.Jmb.2010.05.051  0.431
2010 Laganowsky A, Benesch JL, Landau M, Ding L, Sawaya MR, Cascio D, Huang Q, Robinson CV, Horwitz J, Eisenberg D. Crystal structures of truncated alphaA and alphaB crystallins reveal structural mechanisms of polydispersity important for eye lens function. Protein Science : a Publication of the Protein Society. 19: 1031-43. PMID 20440841 DOI: 10.1002/Pro.380  0.429
2010 Wang L, Schubert D, Sawaya MR, Eisenberg D, Riek R. Multidimensional structure-activity relationship of a protein in its aggregated states. Angewandte Chemie (International Ed. in English). 49: 3904-8. PMID 20397175 DOI: 10.1002/Anie.201000068  0.465
2010 Goldschmidt L, Teng PK, Riek R, Eisenberg D. Identifying the amylome, proteins capable of forming amyloid-like fibrils. Proceedings of the National Academy of Sciences of the United States of America. 107: 3487-92. PMID 20133726 DOI: 10.1073/Pnas.0915166107  0.77
2010 Park J, Apostol MI, Eisenberg D. Beta-Barrel Hypothesis: Structural Insights to Oligomeric Prion Conformation Biophysical Journal. 98: 650a. DOI: 10.1016/J.Bpj.2009.12.3562  0.826
2009 Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, ... Eisenberg D, et al. Recurated protein interaction datasets. Nature Methods. 6: 860-1. PMID 19935838 DOI: 10.1038/Nmeth1209-860  0.337
2009 Ivanova MI, Sievers SA, Sawaya MR, Wall JS, Eisenberg D. Molecular basis for insulin fibril assembly. Proceedings of the National Academy of Sciences of the United States of America. 106: 18990-5. PMID 19864624 DOI: 10.1073/Pnas.0910080106  0.75
2009 Wiltzius JJ, Landau M, Nelson R, Sawaya MR, Apostol MI, Goldschmidt L, Soriaga AB, Cascio D, Rajashankar K, Eisenberg D. Molecular mechanisms for protein-encoded inheritance. Nature Structural & Molecular Biology. 16: 973-8. PMID 19684598 DOI: 10.1038/Nsmb.1643  0.795
2009 Teng PK, Eisenberg D. Short protein segments can drive a non-fibrillizing protein into the amyloid state. Protein Engineering, Design & Selection : Peds. 22: 531-6. PMID 19602569 DOI: 10.1093/Protein/Gzp037  0.685
2009 Maji SK, Perrin MH, Sawaya MR, Jessberger S, Vadodaria K, Rissman RA, Singru PS, Nilsson KP, Simon R, Schubert D, Eisenberg D, Rivier J, Sawchenko P, Vale W, Riek R. Functional amyloids as natural storage of peptide hormones in pituitary secretory granules. Science (New York, N.Y.). 325: 328-32. PMID 19541956 DOI: 10.1126/Science.1173155  0.397
2009 Wiltzius JJ, Sievers SA, Sawaya MR, Eisenberg D. Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process. Protein Science : a Publication of the Protein Society. 18: 1521-30. PMID 19475663 DOI: 10.1002/Pro.145  0.811
2009 Miallau L, Faller M, Chiang J, Arbing M, Guo F, Cascio D, Eisenberg D. Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 284: 276-83. PMID 18952600 DOI: 10.1074/Jbc.M805061200  0.371
2008 Llewellyn R, Eisenberg DS. Annotating proteins with generalized functional linkages. Proceedings of the National Academy of Sciences of the United States of America. 105: 17700-5. PMID 19004787 DOI: 10.1073/Pnas.0809583105  0.8
2008 Medrano-Soto A, Pal D, Eisenberg D. Inferring molecular function: contributions from functional linkages. Trends in Genetics : Tig. 24: 587-90. PMID 18951645 DOI: 10.1016/J.Tig.2008.10.001  0.318
2008 Sawaya MR, Wojtowicz WM, Andre I, Qian B, Wu W, Baker D, Eisenberg D, Zipursky SL. A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms. Cell. 134: 1007-18. PMID 18805093 DOI: 10.1016/J.Cell.2008.07.042  0.336
2008 Riley R, Pellegrini M, Eisenberg D. Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis. Plos Computational Biology. 4: e1000174. PMID 18787688 DOI: 10.1371/Journal.Pcbi.1000174  0.523
2008 Wang L, Maji SK, Sawaya MR, Eisenberg D, Riek R. Bacterial inclusion bodies contain amyloid-like structure. Plos Biology. 6: e195. PMID 18684013 DOI: 10.1371/Journal.Pbio.0060195  0.452
2008 Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PA, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH, Eisenberg D, Berliner J, Modlin RL. Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. The Journal of Clinical Investigation. 118: 2917-28. PMID 18636118 DOI: 10.1172/Jci34189  0.446
2008 Wiltzius JJ, Sievers SA, Sawaya MR, Cascio D, Popov D, Riekel C, Eisenberg D. Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin). Protein Science : a Publication of the Protein Society. 17: 1467-74. PMID 18556473 DOI: 10.1110/Ps.036509.108  0.815
2008 Guo Z, Eisenberg D. The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold. Protein Science : a Publication of the Protein Society. 17: 1617-23. PMID 18552127 DOI: 10.1110/Ps.036368.108  0.441
2008 Miller CS, Eisenberg D. Using inferred residue contacts to distinguish between correct and incorrect protein models. Bioinformatics (Oxford, England). 24: 1575-82. PMID 18511466 DOI: 10.1093/Bioinformatics/Btn248  0.564
2008 Salwiński Ł, Eisenberg D. Motif-based fold assignment. Protein Science. 10: 2460-2469. PMID 11714913 DOI: 10.1110/Ps.14401  0.303
2007 Kuriyan J, Eisenberg D. The origin of protein interactions and allostery in colocalization. Nature. 450: 983-90. PMID 18075577 DOI: 10.1038/Nature06524  0.357
2007 Anderson DH, Kickhoefer VA, Sievers SA, Rome LH, Eisenberg D. Draft crystal structure of the vault shell at 9-A resolution. Plos Biology. 5: e318. PMID 18044992 DOI: 10.1371/Journal.Pbio.0050318  0.757
2007 Murillo AC, Li HY, Alber T, Baker EN, Berger JM, Cherney LT, Cherney MM, Cho YS, Eisenberg D, Garen CR, Goulding CW, Hung LW, Ioerger TR, Jacobs WR, James MN, et al. High throughput crystallography of TB drug targets. Infectious Disorders Drug Targets. 7: 127-39. PMID 17970224 DOI: 10.2174/187152607781001853  0.715
2007 Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, ... ... Eisenberg D, et al. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. Bmc Biology. 5: 44. PMID 17925023 DOI: 10.1186/1741-7007-5-44  0.301
2007 Kim SM, Bowers PM, Pal D, Strong M, Terwilliger TC, Kaufmann M, Eisenberg D. Functional linkages can reveal protein complexes for structure determination. Structure (London, England : 1993). 15: 1079-89. PMID 17850747 DOI: 10.1016/J.Str.2007.06.021  0.65
2007 Goldschmidt L, Cooper DR, Derewenda ZS, Eisenberg D. Toward rational protein crystallization: A Web server for the design of crystallizable protein variants. Protein Science : a Publication of the Protein Society. 16: 1569-76. PMID 17656576 DOI: 10.1110/Ps.072914007  0.615
2007 Sawaya MR, Sambashivan S, Nelson R, Ivanova MI, Sievers SA, Apostol MI, Thompson MJ, Balbirnie M, Wiltzius JJ, McFarlane HT, Madsen AØ, Riekel C, Eisenberg D. Atomic structures of amyloid cross-beta spines reveal varied steric zippers. Nature. 447: 453-7. PMID 17468747 DOI: 10.1038/Nature05695  0.798
2007 Guo Z, Eisenberg D. The mechanism of the amyloidogenic conversion of T7 endonuclease I. The Journal of Biological Chemistry. 282: 14968-74. PMID 17360710 DOI: 10.1074/Jbc.M609514200  0.331
2007 Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, ... Eisenberg D, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016  0.66
2007 Tsemekhman K, Goldschmidt L, Eisenberg D, Baker D. Cooperative hydrogen bonding in amyloid formation. Protein Science : a Publication of the Protein Society. 16: 761-4. PMID 17327394 DOI: 10.1110/Ps.062609607  0.618
2007 Strong M, Eisenberg D. The protein network as a tool for finding novel drug targets. Progress in Drug Research. Fortschritte Der Arzneimittelforschung. Progrã¨S Des Recherches Pharmaceutiques. 64: 191, 193-215. PMID 17195476 DOI: 10.1007/978-3-7643-7567-6_8  0.606
2007 White EL, Southworth K, Ross L, Cooley S, Gill RB, Sosa MI, Manouvakhova A, Rasmussen L, Goulding C, Eisenberg D, Fletcher TM. A novel inhibitor of Mycobacterium tuberculosis pantothenate synthetase. Journal of Biomolecular Screening. 12: 100-5. PMID 17175524 DOI: 10.1177/1087057106296484  0.617
2007 Goulding CW, Bowers PM, Segelke B, Lekin T, Kim CY, Terwilliger TC, Eisenberg D. The structure and computational analysis of Mycobacterium tuberculosis protein CitE suggest a novel enzymatic function. Journal of Molecular Biology. 365: 275-83. PMID 17064730 DOI: 10.1016/J.Jmb.2006.09.086  0.671
2006 Nelson R, Eisenberg D. Structural models of amyloid-like fibrils. Advances in Protein Chemistry. 73: 235-82. PMID 17190616 DOI: 10.1016/S0065-3233(06)73008-X  0.615
2006 Abdallah AM, Verboom T, Hannes F, Safi M, Strong M, Eisenberg D, Musters RJ, Vandenbroucke-Grauls CM, Appelmelk BJ, Luirink J, Bitter W. A specific secretion system mediates PPE41 transport in pathogenic mycobacteria. Molecular Microbiology. 62: 667-79. PMID 17076665 DOI: 10.1111/J.1365-2958.2006.05409.X  0.577
2006 Eisenberg D, Nelson R, Sawaya MR, Balbirnie M, Sambashivan S, Ivanova MI, Madsen AØ, Riekel C. The structural biology of protein aggregation diseases: Fundamental questions and some answers. Accounts of Chemical Research. 39: 568-75. PMID 16981672 DOI: 10.1021/Ar0500618  0.832
2006 Guo Z, Eisenberg D. Runaway domain swapping in amyloid-like fibrils of T7 endonuclease I. Proceedings of the National Academy of Sciences of the United States of America. 103: 8042-7. PMID 16698921 DOI: 10.1073/Pnas.0602607103  0.395
2006 Bennett MJ, Sawaya MR, Eisenberg D. Deposition diseases and 3D domain swapping. Structure (London, England : 1993). 14: 811-24. PMID 16698543 DOI: 10.1016/J.Str.2006.03.011  0.435
2006 Strong M, Sawaya MR, Wang S, Phillips M, Cascio D, Eisenberg D. Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 8060-5. PMID 16690741 DOI: 10.1073/Pnas.0602606103  0.665
2006 Nelson R, Eisenberg D. Recent atomic models of amyloid fibril structure. Current Opinion in Structural Biology. 16: 260-5. PMID 16563741 DOI: 10.1016/J.Sbi.2006.03.007  0.593
2006 Ivanova MI, Thompson MJ, Eisenberg D. A systematic screen of beta(2)-microglobulin and insulin for amyloid-like segments. Proceedings of the National Academy of Sciences of the United States of America. 103: 4079-82. PMID 16537488 DOI: 10.1073/Pnas.0511298103  0.425
2006 Thompson MJ, Sievers SA, Karanicolas J, Ivanova MI, Baker D, Eisenberg D. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences of the United States of America. 103: 4074-8. PMID 16537487 DOI: 10.1073/Pnas.0511295103  0.775
2006 Eisenberg D, Marcotte E, McLachlan AD, Pellegrini M. Bioinformatic challenges for the next decade(s). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 525-7. PMID 16524841 DOI: 10.1098/Rstb.2005.1797  0.531
2006 Rachman H, Strong M, Schaible U, Schuchhardt J, Hagens K, Mollenkopf H, Eisenberg D, Kaufmann SH. Mycobacterium tuberculosis gene expression profiling within the context of protein networks. Microbes and Infection / Institut Pasteur. 8: 747-57. PMID 16513384 DOI: 10.1016/J.Micinf.2005.09.011  0.568
2006 Liu PT, Stenger S, Li H, Wenzel L, Tan BH, Krutzik SR, Ochoa MT, Schauber J, Wu K, Meinken C, Kamen DL, Wagner M, Bals R, Steinmeyer A, Zügel U, ... ... Eisenberg D, et al. Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response. Science (New York, N.Y.). 311: 1770-3. PMID 16497887 DOI: 10.1126/Science.1123933  0.452
2006 Wang S, Eisenberg D. Crystal structure of the pantothenate synthetase from Mycobacterium tuberculosis, snapshots of the enzyme in action. Biochemistry. 45: 1554-61. PMID 16460002 DOI: 10.1021/Bi051873E  0.36
2006 Rachman H, Strong M, Ulrichs T, Grode L, Schuchhardt J, Mollenkopf H, Kosmiadi GA, Eisenberg D, Kaufmann SH. Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis. Infection and Immunity. 74: 1233-42. PMID 16428773 DOI: 10.1128/Iai.74.2.1233-1242.2006  0.572
2005 Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D. Utilizing logical relationships in genomic data to decipher cellular processes. The Febs Journal. 272: 5110-8. PMID 16218945 DOI: 10.1111/J.1742-4658.2005.04946.X  0.343
2005 Riley R, Lee C, Sabatti C, Eisenberg D. Inferring protein domain interactions from databases of interacting proteins. Genome Biology. 6: R89. PMID 16207360 DOI: 10.1186/Gb-2005-6-10-R89  0.647
2005 Sambashivan S, Liu Y, Sawaya MR, Gingery M, Eisenberg D. Amyloid-like fibrils of ribonuclease A with three-dimensional domain-swapped and native-like structure. Nature. 437: 266-9. PMID 16148936 DOI: 10.1038/Nature03916  0.835
2005 Nelson R, Sawaya MR, Balbirnie M, Madsen A, Riekel C, Grothe R, Eisenberg D. Structure of the cross-β spine of amyloid-like fibrils Nature. 435: 773-778. PMID 15944695 DOI: 10.1038/Nature03680  0.827
2005 Li H, Sawaya MR, Tabita FR, Eisenberg D. Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum. Structure (London, England : 1993). 13: 779-89. PMID 15893668 DOI: 10.1016/J.Str.2005.02.017  0.609
2005 Goulding CW, Apostol MI, Sawaya MR, Phillips M, Parseghian A, Eisenberg D. Regulation by oligomerization in a mycobacterial folate biosynthetic enzyme. Journal of Molecular Biology. 349: 61-72. PMID 15876368 DOI: 10.1016/J.Jmb.2005.03.023  0.793
2005 Müller P, Sawaya MR, Pashkov I, Chan S, Nguyen C, Wu Y, Perry LJ, Eisenberg D. The 1.70 Å X-ray crystal structure of Mycobacterium tuberculosis phosphoglycerate mutase Acta Crystallographica Section D: Biological Crystallography. 61: 309-315. PMID 15735341 DOI: 10.1107/S0907444904033190  0.403
2005 Li H, Pellegrini M, Eisenberg D. Detection of parallel functional modules by comparative analysis of genome sequences. Nature Biotechnology. 23: 253-60. PMID 15696156 DOI: 10.1038/Nbt1065  0.517
2005 Pal D, Eisenberg D. Inference of protein function from protein structure. Structure (London, England : 1993). 13: 121-30. PMID 15642267 DOI: 10.1016/J.Str.2004.10.015  0.392
2005 Zhang KY, Eisenberg D. Solid-state phase transition in the crystal structure of ribulose 1,5-bisphosphate carboxylase/oxygenase. Acta Crystallographica. Section D, Biological Crystallography. 50: 258-62. PMID 15299436 DOI: 10.1107/S090744499301306X  0.307
2005 Eisenberg D, Nelson R, Sawaya MR, Balbirnie M, Madsen AØ, Riekel C, Sambashivan S, Liu Y, Gingery M, Grothe R. Structural studies of amyloid Acta Crystallographica Section a Foundations of Crystallography. 61: c8-c8. DOI: 10.1107/S0108767305099666  0.807
2005 Eisenberg D. Witnessing the structure revolution Nature Structural & Molecular Biology. 12: 731-731. DOI: 10.1038/Nsmb0905-731  0.345
2004 Strong M, Cascio D, Eisenberg D. A web-based comparative genomics tutorial for investigating microbial genomes. Microbiology Education. 5: 30-5. PMID 23653555  0.518
2004 Bowers PM, Cokus SJ, Eisenberg D, Yeates TO. Use of logic relationships to decipher protein network organization. Science (New York, N.Y.). 306: 2246-9. PMID 15618515 DOI: 10.1126/Science.1103330  0.35
2004 Bennett MJ, Eisenberg D. The evolving role of 3D domain swapping in proteins. Structure (London, England : 1993). 12: 1339-41. PMID 15296726 DOI: 10.1016/J.Str.2004.07.004  0.348
2004 Ivanova MI, Sawaya MR, Gingery M, Attinger A, Eisenberg D. An amyloid-forming segment of beta2-microglobulin suggests a molecular model for the fibril. Proceedings of the National Academy of Sciences of the United States of America. 101: 10584-9. PMID 15249659 DOI: 10.1073/Pnas.0403756101  0.385
2004 Reinhardt A, Eisenberg D. DPANN: improved sequence to structure alignments following fold recognition. Proteins. 56: 528-38. PMID 15229885 DOI: 10.1002/Prot.20144  0.408
2004 Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biology. 5: R35. PMID 15128449 DOI: 10.1186/Gb-2004-5-5-R35  0.307
2004 Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Eisenberg D, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926  0.343
2004 Kleiger G, Panina EM, Mallick P, Eisenberg D. PFIT and PFRIT: bioinformatic algorithms for detecting glycosidase function from structure and sequence. Protein Science : a Publication of the Protein Society. 13: 221-9. PMID 14691237 DOI: 10.1110/Ps.03274104  0.785
2004 Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Research. 32: D449-51. PMID 14681454 DOI: 10.1093/nar/gkh086  0.648
2004 Goulding CW, Apostol MI, Gleiter S, Parseghian A, Bardwell J, Gennaro M, Eisenberg D. Gram-positive DsbE proteins function differently from Gram-negative DsbE homologs. A structure to function analysis of DsbE from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 279: 3516-24. PMID 14597624 DOI: 10.1074/Jbc.M311833200  0.818
2004 Salwinski L, Eisenberg D. Computational methods of analysis of protein-protein interactions. Current Opinion in Structural Biology. 13: 377-82. PMID 12831890 DOI: 10.1016/S0959-440X(03)00070-8  0.331
2004 Wang S, Eisenberg D. Crystal structures of a pantothenate synthetase from M. tuberculosis and its complexes with substrates and a reaction intermediate. Protein Science : a Publication of the Protein Society. 12: 1097-108. PMID 12717031 DOI: 10.1110/Ps.0241803  0.34
2003 Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps. Nucleic Acids Research. 31: 7099-109. PMID 14654685 DOI: 10.1093/Nar/Gkg924  0.59
2003 Lee S, Sawaya MR, Eisenberg D. Structure of superoxide dismutase from Pyrobaculum aerophilum presents a challenging case in molecular replacement with multiple molecules, pseudo-symmetry and twinning. Acta Crystallographica. Section D, Biological Crystallography. 59: 2191-9. PMID 14646077 DOI: 10.1107/S0907444903019942  0.667
2003 Ivanova MI, Gingery M, Whitson LJ, Eisenberg D. Role of the C-terminal 28 residues of beta2-microglobulin in amyloid fibril formation. Biochemistry. 42: 13536-40. PMID 14622000 DOI: 10.1021/Bi0301486  0.399
2003 Hsu T, Hingley-Wilson SM, Chen B, Chen M, Dai AZ, Morin PM, Marks CB, Padiyar J, Goulding C, Gingery M, Eisenberg D, Russell RG, Derrick SC, Collins FM, Morris SL, et al. The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue. Proceedings of the National Academy of Sciences of the United States of America. 100: 12420-5. PMID 14557547 DOI: 10.1073/Pnas.1635213100  0.593
2003 Goulding CW, Perry LJ, Anderson D, Sawaya MR, Cascio D, Apostol MI, Chan S, Parseghian A, Wang SS, Wu Y, Cassano V, Gill HS, Eisenberg D. Structural genomics of Mycobacterium tuberculosis: a preliminary report of progress at UCLA. Biophysical Chemistry. 105: 361-70. PMID 14499904 DOI: 10.1016/S0301-4622(03)00101-7  0.815
2003 Bleharski JR, Li H, Meinken C, Graeber TG, Ochoa MT, Yamamura M, Burdick A, Sarno EN, Wagner M, Röllinghoff M, Rea TH, Colonna M, Stenger S, Bloom BR, Eisenberg D, et al. Use of genetic profiling in leprosy to discriminate clinical forms of the disease. Science (New York, N.Y.). 301: 1527-30. PMID 12970564 DOI: 10.1126/Science.1087785  0.468
2003 Eisenberg D. The discovery of the alpha-helix and beta-sheet, the principal structural features of proteins. Proceedings of the National Academy of Sciences of the United States of America. 100: 11207-10. PMID 12966187 DOI: 10.1073/Pnas.2034522100  0.43
2003 Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D. Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biology. 4: R59. PMID 12952538 DOI: 10.1186/Gb-2003-4-9-R59  0.699
2003 Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, ... ... Eisenberg DS, et al. The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology. Tuberculosis (Edinburgh, Scotland). 83: 223-49. PMID 12906835 DOI: 10.1016/S1472-9792(03)00051-9  0.799
2003 Lee S, Eisenberg D. Seeded conversion of recombinant prion protein to a disulfide-bonded oligomer by a reduction-oxidation process. Nature Structural Biology. 10: 725-30. PMID 12897768 DOI: 10.1038/Nsb961  0.712
2003 Diaz-Avalos R, Long C, Fontano E, Balbirnie M, Grothe R, Eisenberg D, Caspar DL. Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide. Journal of Molecular Biology. 330: 1165-75. PMID 12860136 DOI: 10.1016/S0022-2836(03)00659-4  0.808
2003 Mura C, Phillips M, Kozhukhovsky A, Eisenberg D. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proceedings of the National Academy of Sciences of the United States of America. 100: 4539-44. PMID 12668760 DOI: 10.1073/Pnas.0538042100  0.675
2003 Mura C, Kozhukhovsky A, Gingery M, Phillips M, Eisenberg D. The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Science : a Publication of the Protein Society. 12: 832-47. PMID 12649441 DOI: 10.1110/Ps.0224703  0.615
2003 McCarty AS, Kleiger G, Eisenberg D, Smale ST. Selective dimerization of a C2H2 zinc finger subfamily. Molecular Cell. 11: 459-70. PMID 12620233 DOI: 10.1016/S1097-2765(03)00043-1  0.731
2003 Mura C, Katz JE, Clarke SG, Eisenberg D. Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity. Journal of Molecular Biology. 326: 1559-75. PMID 12595266 DOI: 10.1016/S0022-2836(03)00056-1  0.631
2003 Anderson DH, Sawaya MR, Cascio D, Ernst W, Modlin R, Krensky A, Eisenberg D. Granulysin crystal structure and a structure-derived lytic mechanism. Journal of Molecular Biology. 325: 355-65. PMID 12488100 DOI: 10.1016/S0022-2836(02)01234-2  0.337
2003 Deane CM, Salwiński Ł, Xenarios I, Eisenberg D. Protein interactions: two methods for assessment of the reliability of high throughput observations. Molecular & Cellular Proteomics : McP. 1: 349-56. PMID 12118076 DOI: 10.1074/Mcp.M100037-Mcp200  0.313
2003 Diaz-Avalos R, Long C, Fontano E, Balbirnie M, Grothe R, Eisenberg D, Caspar DL. Cross-beta structure of an amyloid-forming peptide studied by electron nano-crystallography Fibre Diffraction Review. 11: 79. DOI: 10.1382/S20031179  0.802
2003 Mura C, Katz JE, Clarke SG, Eisenberg D. Erratum to “Structure and Function of an Archaeal Homolog of Survival Protein E (SurEα): An Acid Phosphatase with Purine Nucleotide Specificity” Journal of Molecular Biology. 328: 517. DOI: 10.1016/S0022-2836(03)00343-7  0.574
2002 Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, ... Eisenberg D, et al. The TB structural genomics consortium: providing a structural foundation for drug discovery. Current Drug Targets. Infectious Disorders. 2: 121-41. PMID 12462144 DOI: 10.2174/1568005023342551  0.807
2002 Mallick P, Weiss R, Eisenberg D. The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds. Proceedings of the National Academy of Sciences of the United States of America. 99: 16041-6. PMID 12461172 DOI: 10.1073/Pnas.252626399  0.604
2002 Goulding CW, Parseghian A, Sawaya MR, Cascio D, Apostol MI, Gennaro ML, Eisenberg D. Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution. Protein Science : a Publication of the Protein Society. 11: 2887-93. PMID 12441386 DOI: 10.1110/Ps.0219002  0.833
2002 Kleiger G, Eisenberg D. GXXXG and GXXXA motifs stabilize FAD and NAD(P)-binding Rossmann folds through C(alpha)-H... O hydrogen bonds and van der waals interactions. Journal of Molecular Biology. 323: 69-76. PMID 12368099 DOI: 10.1016/S0022-2836(02)00885-9  0.754
2002 Gill HS, Pfluegl GM, Eisenberg D. Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation. Biochemistry. 41: 9863-72. PMID 12146952 DOI: 10.1021/Bi020254S  0.566
2002 Mallick P, Boutz DR, Eisenberg D, Yeates TO. Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds. Proceedings of the National Academy of Sciences of the United States of America. 99: 9679-84. PMID 12107280 DOI: 10.1073/Pnas.142310499  0.763
2002 Duan XJ, Xenarios I, Eisenberg D. Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database. Molecular & Cellular Proteomics : McP. 1: 104-16. PMID 12096128 DOI: 10.1074/Mcp.M100026-Mcp200  0.362
2002 Ghirlanda G, Lear JD, Ogihara NL, Eisenberg D, DeGrado WF. A hierarchic approach to the design of hexameric helical barrels. Journal of Molecular Biology. 319: 243-53. PMID 12051949 DOI: 10.1016/S0022-2836(02)00233-4  0.387
2002 Goulding CW, Sawaya MR, Parseghian A, Lim V, Eisenberg D, Missiakas D. Thiol-disulfide exchange in an immunoglobulin-like fold: Structure of the N-terminal domain of DsbD Biochemistry. 41: 6920-6927. PMID 12033924 DOI: 10.1021/Bi016038L  0.634
2002 Liu Y, Eisenberg D. 3D domain swapping: as domains continue to swap. Protein Science : a Publication of the Protein Society. 11: 1285-99. PMID 12021428 DOI: 10.1110/Ps.0201402  0.793
2002 Kleiger G, Grothe R, Mallick P, Eisenberg D. GXXXG and AXXXA: Common α-Helical Interaction Motifs in Proteins, Particularly in Extremophiles† Biochemistry. 41: 5990-5997. PMID 11993993 DOI: 10.1021/Bi0200763  0.79
2002 Wang S, Mura C, Sawaya MR, Cascio D, Eisenberg D. Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallographica. Section D, Biological Crystallography. 58: 571-8. PMID 11914479 DOI: 10.1107/S0907444902001191  0.656
2002 Liu Y, Gotte G, Libonati M, Eisenberg D. Structures of the two 3D domain-swapped RNase A trimers. Protein Science : a Publication of the Protein Society. 11: 371-80. PMID 11790847 DOI: 10.1110/Ps.36602  0.815
2002 Eisenberg D. Heroic Battles of the Protein Wars Science. 295: 2021-2022. DOI: 10.1126/Science.1070319  0.326
2002 Nelson R, Grothe R, Balbirnie M, Sawaya M, Eisenberg D. Structural studies of polar peptides derived from the yeast prion Sup35 Acta Crystallographica Section a Foundations of Crystallography. 58: c92-c92. DOI: 10.1107/S0108767302088724  0.775
2001 Kleiger G, Perry J, Eisenberg D. 3D structure and significance of the GPhiXXG helix packing motif in tetramers of the E1beta subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum. Biochemistry. 40: 14484-14492. PMID 11724561 DOI: 10.1021/Bi011016K  0.74
2001 Singer E, Landgraf R, Horan T, Slamon D, Eisenberg D. Identification of a heregulin binding site in HER3 extracellular domain. The Journal of Biological Chemistry. 276: 44266-74. PMID 11555649 DOI: 10.1074/Jbc.M105428200  0.711
2001 Xenarios I, Eisenberg D. Protein interaction databases. Current Opinion in Biotechnology. 12: 334-9. PMID 11551460 DOI: 10.1016/S0958-1669(00)00224-X  0.337
2001 Dym O, Eisenberg D. Sequence-structure analysis of FAD-containing proteins. Protein Science. 10: 1712-1728. PMID 11514662 DOI: 10.1110/Ps.12801  0.322
2001 Mura C, Cascio D, Sawaya MR, Eisenberg DS. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core. Proceedings of the National Academy of Sciences of the United States of America. 98: 5532-7. PMID 11331747 DOI: 10.1073/Pnas.091102298  0.611
2001 Gill HS, Eisenberg D. The crystal structure of phosphinothricin in the active site of glutamine synthetase illuminates the mechanism of enzymatic inhibition. Biochemistry. 40: 1903-12. PMID 11329256 DOI: 10.1021/Bi002438H  0.557
2001 Marcotte EM, Xenarios I, Eisenberg D. Mining literature for protein-protein interactions. Bioinformatics (Oxford, England). 17: 359-63. PMID 11301305 DOI: 10.1093/Bioinformatics/17.4.359  0.523
2001 Landgraf R, Xenarios I, Eisenberg D. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. Journal of Molecular Biology. 307: 1487-502. PMID 11292355 DOI: 10.1006/Jmbi.2001.4540  0.347
2001 Anderson DH, Harth G, Horwitz MA, Eisenberg D. An interfacial mechanism and a class of inhibitors inferred from two crystal structures of the Mycobacterium tuberculosis 30 kDa major secretory protein (Antigen 85B), a mycolyl transferase. Journal of Molecular Biology. 307: 671-81. PMID 11254389 DOI: 10.1006/Jmbi.2001.4461  0.354
2001 Balbirnie M, Grothe R, Eisenberg DS. An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated β-sheet structure for amyloid Proceedings of the National Academy of Sciences of the United States of America. 98: 2375-2380. PMID 11226247 DOI: 10.1073/pnas.041617698  0.824
2001 Liu Y, Gotte G, Libonati M, Eisenberg D. A domain-swapped RNase A dimer with implications for amyloid formation. Nature Structural Biology. 8: 211-4. PMID 11224563 DOI: 10.1038/84941  0.817
2001 Ogihara NL, Ghirlanda G, Bryson JW, Gingery M, DeGrado WF, Eisenberg D. Design of three-dimensional domain-swapped dimers and fibrous oligomers. Proceedings of the National Academy of Sciences of the United States of America. 98: 1404-9. PMID 11171963 DOI: 10.1073/Pnas.98.4.1404  0.379
2001 Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D. DIP: The Database of Interacting Proteins: 2001 update. Nucleic Acids Research. 29: 239-41. PMID 11125102 DOI: 10.1093/Nar/29.1.239  0.529
2000 Steere B, Eisenberg D. Characterization of high-order diphtheria toxin oligomers. Biochemistry. 39: 15901-15909. PMID 11123917 DOI: 10.1021/Bi0011678  0.804
2000 Marcotte EM, Xenarios I, van Der Bliek AM, Eisenberg D. Localizing proteins in the cell from their phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 97: 12115-20. PMID 11035803 DOI: 10.1073/Pnas.220399497  0.555
2000 Dym O, Pratt EA, Ho C, Eisenberg D. The crystal structure of d-lactate dehydrogenase, a peripheral membrane respiratory enzyme Proceedings of the National Academy of Sciences of the United States of America. 97: 9413-9418. PMID 10944213 DOI: 10.1073/Pnas.97.17.9413  0.304
2000 Eisenberg D, Marcotte EM, Xenarios I, Yeates TO. Protein function in the post-genomic era. Nature. 405: 823-6. PMID 10866208 DOI: 10.1038/35015694  0.535
2000 Kleiger G, Beamer LJ, Grothe R, Mallick P, Eisenberg D. The 1.7 A crystal structure of BPI: a study of how two dissimilar amino acid sequences can adopt the same fold. Journal of Molecular Biology. 299: 1019-34. PMID 10843855 DOI: 10.1006/Jmbi.2000.3805  0.782
2000 Ruth L, Eisenberg D, Neufeld EF. α-L-iduronidase forms semi-crystalline spherulites with amyloid-like properties Acta Crystallographica Section D: Biological Crystallography. 56: 524-528. PMID 10739940 DOI: 10.1107/S090744490000007X  0.34
2000 Eisenberg D, Gill HS, Pfluegl GM, Rotstein SH. Structure-function relationships of glutamine synthetases. Biochimica Et Biophysica Acta. 1477: 122-45. PMID 10708854 DOI: 10.1016/S0167-4838(99)00270-8  0.558
2000 Mallick P, Goodwill KE, Fitz-Gibbon S, Miller JH, Eisenberg D. Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing. Proceedings of the National Academy of Sciences of the United States of America. 97: 2450-5. PMID 10706641 DOI: 10.1073/Pnas.050589297  0.585
2000 Rees DC, Eisenberg D. Turning a reference inside-out: Commentary on an article by Stevens and Arkin entitled: 'Are membrane proteins 'inside-out' proteins?' (Proteins 1999;36:135-143) Proteins: Structure, Function and Genetics. 38: 121-122. PMID 10656259 DOI: 10.1002/(Sici)1097-0134(20000201)38:2<121::Aid-Prot1>3.0.Co;2-M  0.319
2000 Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D. DIP: the database of interacting proteins. Nucleic Acids Research. 28: 289-91. PMID 10592249 DOI: 10.1093/Nar/28.1.289  0.794
2000 Landgraf R, Fischer D, Eisenberg D. Analysis of heregulin symmetry by weighted evolutionary tracing. Protein Engineering. 12: 943-51. PMID 10585499 DOI: 10.1093/Protein/12.11.943  0.32
2000 Goulding CW, Mallick P, Eisenberg D. Structural and Functional Studies of Proteins with Predicted “Novel” Folds in Pyrobaculum Aerophilium Biochemical Society Transactions. 28: A446-A446. DOI: 10.1042/Bst028A446B  0.742
2000 Eisenberg D, Marcottc E, Pellegrini M, Thompson M, Rotstein S, Yeates T. From genome sequences to protein functions Biochemical Society Transactions. 28: A120-A120. DOI: 10.1042/Bst028A120A  0.313
1999 Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature. 402: 83-6. PMID 10573421 DOI: 10.1038/47048  0.599
1999 Eisenberg D. Glories of protein structure Structure. 7. PMID 10545335 DOI: 10.1016/S0969-2126(00)80050-7  0.453
1999 Marcotte EM, Pellegrini M, Yeates TO, Eisenberg D. A census of protein repeats. Journal of Molecular Biology. 293: 151-60. PMID 10512723 DOI: 10.1006/Jmbi.1999.3136  0.604
1999 Eisenberg D. How Chaperones Protect Virgin Proteins Science. 285: 1021-1022. PMID 10475844 DOI: 10.1126/Science.285.5430.1021  0.368
1999 Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science (New York, N.Y.). 285: 751-3. PMID 10427000 DOI: 10.1126/Science.285.5428.751  0.78
1999 Privé GG, Anderson DH, Wesson L, Cascio D, Eisenberg D. Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle. Protein Science : a Publication of the Protein Society. 8: 1400-9. PMID 10422828 DOI: 10.1110/Ps.8.7.1400  0.358
1999 Thompson MJ, Eisenberg D. Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability Journal of Molecular Biology. 290: 595-604. PMID 10390356 DOI: 10.1006/Jmbi.1999.2889  0.384
1999 Fischer D, Eisenberg D. Predicting structures for genome proteins. Current Opinion in Structural Biology. 9: 208-11. PMID 10322219 DOI: 10.1016/S0959-440X(99)80029-3  0.346
1999 Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 96: 4285-8. PMID 10200254 DOI: 10.1073/Pnas.96.8.4285  0.606
1999 Gill HS, Pfluegl GM, Eisenberg D. Preliminary crystallographic studies on glutamine synthetase from Mycobacterium tuberculosis. Acta Crystallographica. Section D, Biological Crystallography. 55: 865-8. PMID 10089318 DOI: 10.1107/S0907444998017685  0.551
1999 Hart PJ, Balbirnie MM, Ogihara NL, Nersissian AM, Weiss MS, Valentine JS, Eisenberg D. A structure-based mechanism for copper-zinc superoxide dismutase. Biochemistry. 38: 2167-78. PMID 10026301 DOI: 10.1021/Bi982284U  0.781
1999 Beamer LJ, Carroll SF, Eisenberg D. The three-dimensional structure of human bactericidal/permeability-increasing protein: implications for understanding protein-lipopolysaccharide interactions. Biochemical Pharmacology. 57: 225-9. PMID 9890549 DOI: 10.1016/S0006-2952(98)00279-2  0.369
1999 Marcotte EM, Eisenberg D. Chicken prion tandem repeats form a stable, protease-resistant domain. Biochemistry. 38: 667-76. PMID 9888807 DOI: 10.1021/Bi981487F  0.628
1998 Beamer LJ, Fischer D, Eisenberg D. Detecting distant relatives of mammalian LPS-binding and lipid transport proteins. Protein Science : a Publication of the Protein Society. 7: 1643-6. PMID 9684900 DOI: 10.1002/Pro.5560070721  0.355
1998 Beamer LJ, Carroll SF, Eisenberg D. The BPI/LBP family of proteins: a structural analysis of conserved regions. Protein Science : a Publication of the Protein Society. 7: 906-14. PMID 9568897 DOI: 10.1002/Pro.5560070408  0.389
1998 Hart PJ, Liu H, Pellegrini M, Nersissian AM, Gralla EB, Valentine JS, Eisenberg D. Subunit asymmetry in the three-dimensional structure of a human CuZnSOD mutant found in familial amyotrophic lateral sclerosis. Protein Science : a Publication of the Protein Society. 7: 545-55. PMID 9541385 DOI: 10.1002/Pro.5560070302  0.348
1998 Liu Y, Hart PJ, Schlunegger MP, Eisenberg D. The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 95: 3437-42. PMID 9520384 DOI: 10.1073/Pnas.95.7.3437  0.808
1997 Eisenberg D, Lüthy R, Bowie JU. VERIFY3D: assessment of protein models with three-dimensional profiles. Methods in Enzymology. 277: 396-404. PMID 9379925 DOI: 10.1016/S0076-6879(97)77022-8  0.612
1997 Anderson DH, Weiss MS, Eisenberg D. Charges, hydrogen bonds, and correlated motions in the 1 A resolution refined structure of the mating pheromone Er-1 from Euplotes raikovi. Journal of Molecular Biology. 273: 479-500. PMID 9344754 DOI: 10.1006/Jmbi.1997.1318  0.32
1997 Fischer D, Eisenberg D. Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Proceedings of the National Academy of Sciences of the United States of America. 94: 11929-34. PMID 9342339 DOI: 10.1073/Pnas.94.22.11929  0.365
1997 Schlunegger MP, Bennett MJ, Eisenberg D. Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly. Advances in Protein Chemistry. 50: 61-122. PMID 9338079 DOI: 10.1016/S0065-3233(08)60319-8  0.407
1997 Bell CE, Yeates TO, Eisenberg D. Unusual conformation of nicotinamide adenine dinucleotide (NAD) bound to diphtheria toxin: a comparison with NAD bound to the oxidoreductase enzymes. Protein Science : a Publication of the Protein Society. 6: 2084-96. PMID 9336832 DOI: 10.1002/Pro.5560061004  0.341
1997 Bell CE, Eisenberg D. Crystal structure of diphtheria toxin bound to nicotinamide adenine dinucleotide. Advances in Experimental Medicine and Biology. 419: 35-43. PMID 9193634 DOI: 10.1007/978-1-4419-8632-0_4  0.351
1997 Beamer LJ, Carroll SF, Eisenberg D. Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution. Science (New York, N.Y.). 276: 1861-4. PMID 9188532 DOI: 10.1126/Science.276.5320.1861  0.389
1997 Rice DW, Eisenberg D. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence. Journal of Molecular Biology. 267: 1026-1038. PMID 9135128 DOI: 10.1006/Jmbi.1997.0924  0.377
1997 Eisenberg D. Into the black of night. Nature Structural Biology. 4: 95-7. PMID 9033584 DOI: 10.1038/Nsb0297-95  0.337
1997 Bell CE, Eisenberg D. Crystal structure of nucleotide-free diphtheria toxin. Biochemistry. 36: 481-8. PMID 9012663 DOI: 10.1021/Bi962214S  0.343
1997 Ogihara NL, Weiss MS, Degrado WF, Eisenberg D. The crystal structure of the designed trimeric coiled coil coil- V(a)L(d): Implications for engineering crystals and supramolecular assemblies Protein Science. 6: 80-88. PMID 9007979 DOI: 10.1002/Pro.5560060109  0.387
1997 Fischer D, Eisenberg D. Protein fold recognition using sequence-derived predictions. Protein Science : a Publication of the Protein Society. 5: 947-55. PMID 8732766 DOI: 10.1002/Pro.5560050516  0.356
1997 Rice DW, Fischer D, Weiss R, Eisenberg D. Fold assignments for amino acid sequences of the CASP2 experiment Proteins: Structure, Function, and Genetics. 29: 113-122. DOI: 10.1002/(Sici)1097-0134(1997)1+<113::Aid-Prot15>3.0.Co;2-R  0.331
1996 Anderson DH, Weiss MS, Eisenberg D. A challenging case for protein crystal structure determination: the mating pheromone Er-1 from Euplotes raikovi. Acta Crystallographica. Section D, Biological Crystallography. 52: 469-80. PMID 15299668 DOI: 10.1107/S0907444995014235  0.378
1996 Fischer D, Elofsson A, Rice D, Eisenberg D. Assessing the performance of fold recognition methods by means of a comprehensive benchmark. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 300-18. PMID 9390240  0.552
1996 Elofsson A, Fischer D, Rice DW, Le Grand SM, Eisenberg D. A study of combined structure/sequence profiles. Folding & Design. 1: 451-61. PMID 9080191 DOI: 10.1016/S1359-0278(96)00061-2  0.602
1996 Betz SF, Raleigh DP, DeGrado WF, Lovejoy B, Anderson D, Ogihara N, Eisenberg D. Crystallization of a designed peptide from a molten globule ensemble Folding and Design. 1: 57-64. PMID 9079364 DOI: 10.1016/S1359-0278(96)00012-0  0.375
1996 Hart PJ, Nersissian AM, Herrmann RG, Nalbandyan RM, Valentine JS, Eisenberg D. A missing link in cupredoxins: crystal structure of cucumber stellacyanin at 1.6 A resolution. Protein Science : a Publication of the Protein Society. 5: 2175-83. PMID 8931136 DOI: 10.1002/Pro.5560051104  0.396
1996 Fahrner RL, Dieckmann T, Harwig SS, Lehrer RI, Eisenberg D, Feigon J. Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes. Chemistry & Biology. 3: 543-50. PMID 8807886 DOI: 10.1016/S1074-5521(96)90145-3  0.799
1996 Bowie JU, Zhang K, Wilmanns M, Eisenberg D. Three-dimensional profiles for measuring compatibility of amino acid sequence with three-dimensional structure. Methods in Enzymology. 266: 598-616. PMID 8743708 DOI: 10.1016/S0076-6879(96)66037-6  0.607
1996 Fischer D, Rice D, Bowie JU, Eisenberg D. Assigning amino acid sequences to 3-dimensional protein folds. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 126-36. PMID 8566533 DOI: 10.1096/Fasebj.10.1.8566533  0.613
1996 Vrielink A, Beamer L, Le T, Eisenberg D. Crystallization of the chaperone protein SecB. Protein Science : a Publication of the Protein Society. 4: 1651-3. PMID 8520492 DOI: 10.1002/Pro.5560040824  0.37
1996 Hart PJ, Nersissian AN, Valentine JS, Eisenberg D. Crystal structure of cucumber stellacyanin at 1.7 Å resolution Acta Crystallographica Section a Foundations of Crystallography. 52: C70-C70. DOI: 10.1107/S0108767396096262  0.311
1996 Balbirnie M, Landgraf R, Eisenberg D. Towards the crystallization of diphtheria toxin translocation mutants P345C, P345E, and P345G Acta Crystallographica Section a Foundations of Crystallography. 52: C143-C143. DOI: 10.1107/S0108767396093506  0.766
1996 Beamer LJ, Carroll SF, Eisenberg D. Crystal structure of BPI, the human bactericidal/permeability-increasing protein Acta Crystallographica Section a Foundations of Crystallography. 52: C166-C166. DOI: 10.1107/S0108767396092628  0.378
1996 Eisenberg D, Privé GG, Ogihara NL, Weiss MS, Anderson DH, Wesson L. Adventures in X-ray structure determination of protein designs Acta Crystallographica Section a Foundations of Crystallography. 52: C211-C211. DOI: 10.1107/S0108767396090915  0.743
1996 Ogihara NL, Weiss MS, DeGrado WF, Eisenberg D. The structure of a designed peptide refined to 2.1 Å resolution Acta Crystallographica Section a Foundations of Crystallography. 52: C215-C215. DOI: 10.1107/S0108767396090769  0.301
1996 Anderson DH, Weiss MS, Eisenberg D. The 1.0 Å resolution refined structure of mating pheromone Er-1 fromEuplotes raikovi Acta Crystallographica Section a Foundations of Crystallography. 52: C231-C231. DOI: 10.1107/S0108767396090149  0.31
1996 Pfluegl GMU, Gill H, Eisenberg D. How to avoid overfitting in refinement of structures with approximately non-crystallographic symmetry. High-resolution structure refinement of glutamine synthetase reveals evidence for homotropic cooperative binding Acta Crystallographica Section A. 52: 238-239. DOI: 10.1107/S0108767396089866  0.348
1995 Bennett MJ, Schlunegger MP, Eisenberg D. 3D domain swapping: a mechanism for oligomer assembly. Protein Science : a Publication of the Protein Society. 4: 2455-68. PMID 8580836 DOI: 10.1002/Pro.5560041202  0.352
1995 Wilmanns M, Eisenberg D. Inverse protein folding by the residue pair preference profile method: estimating the correctness of alignments of structurally compatible sequences Protein Engineering. 8: 627-639. PMID 8577692 DOI: 10.1093/Protein/8.7.627  0.352
1995 Elofsson A, Le Grand SM, Eisenberg D. Local moves: an efficient algorithm for simulation of protein folding. Proteins. 23: 73-82. PMID 8539252 DOI: 10.1002/Prot.340230109  0.555
1995 Weiss MS, Blanke SR, Collier RJ, Eisenberg D. Structure of the isolated catalytic domain of diphtheria toxin. Biochemistry. 34: 773-81. PMID 7827036 DOI: 10.1021/Bi00003A010  0.343
1995 Weiss MS, Anderson DH, Raffioni S, Bradshaw RA, Ortenzi C, Luporini P, Eisenberg D. A cooperative model for receptor recognition and cell adhesion: evidence from the molecular packing in the 1.6-A crystal structure of the pheromone Er-1 from the ciliated protozoan Euplotes raikovi. Proceedings of the National Academy of Sciences of the United States of America. 92: 10172-6. PMID 7479748 DOI: 10.1073/Pnas.92.22.10172  0.33
1994 Privé GG, Verner GE, Weitzman C, Zen KH, Eisenberg D, Kaback HR. Fusion proteins as tools for crystallization: the lactose permease from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 50: 375-9. PMID 15299388 DOI: 10.1107/S0907444993014301  0.789
1994 Bowie JU, Eisenberg D. An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function. Proceedings of the National Academy of Sciences of the United States of America. 91: 4436-40. PMID 8183927 DOI: 10.1073/Pnas.91.10.4436  0.644
1994 Bennett MJ, Choe S, Eisenberg D. Domain swapping: entangling alliances between proteins. Proceedings of the National Academy of Sciences of the United States of America. 91: 3127-31. PMID 8159715 DOI: 10.1073/Pnas.91.8.3127  0.561
1994 Zhang KYJ, Cascio D, Eisenberg D. Crystal structure of the unactivated ribulose 1,5-bisphosphate carboxylase/oxygenase complexed with a transition state analog, 2-carboxy-D- arabinitol 1,5-bisphosphate Protein Science. 3: 64-69. PMID 8142899 DOI: 10.1002/Pro.5560030109  0.307
1994 Zhang KYJ, Eisenberg D. The three-dimensional profile method using residue preference as a continuous function of residue environment. Protein Science. 3: 687-695. PMID 8003986 DOI: 10.1002/Pro.5560030416  0.354
1994 Shen WH, Choe S, Eisenberg D, Collier RJ. Participation of lysine 516 and phenylalanine 530 of diphtheria toxin in receptor recognition. The Journal of Biological Chemistry. 269: 29077-84. PMID 7961874  0.45
1994 Liaw SH, Eisenberg D. Structural model for the reaction mechanism of glutamine synthetase, based on five crystal structures of enzyme-substrate complexes Biochemistry. 33: 675-681. PMID 7904828 DOI: 10.1021/Bi00169A007  0.313
1994 Bennett MJ, Eisenberg D. Refined structure of monomeric diphtheria toxin at 2.3 A resolution. Protein Science : a Publication of the Protein Society. 3: 1464-75. PMID 7833808 DOI: 10.1002/Pro.5560030912  0.369
1994 Bennett MJ, Choe S, Eisenberg D. Refined structure of dimeric diphtheria toxin at 2.0 A resolution. Protein Science : a Publication of the Protein Society. 3: 1444-63. PMID 7833807 DOI: 10.1002/Pro.5560030911  0.564
1994 Liaw S, Jun G, Eisenberg D. Interactions of nucleotides with fully unadenylylated glutamine synthetase from Salmonella typhimurium. Biochemistry. 33: 11184-11188. PMID 7727369 DOI: 10.1021/Bi00203A014  0.31
1994 Zhan H, Choe S, Huynh PD, Finkelstein A, Eisenberg D, Collier RJ. Dynamic transitions of the transmembrane domain of diphtheria toxin: disulfide trapping and fluorescence proximity studies. Biochemistry. 33: 11254-63. PMID 7537085 DOI: 10.1021/Bi00203A022  0.508
1993 Lovejoy B, Choe S, Cascio D, McRorie DK, DeGrado WF, Eisenberg D. Crystal structure of a synthetic triple-stranded alpha-helical bundle. Science (New York, N.Y.). 259: 1288-93. PMID 8446897 DOI: 10.1126/Science.8446897  0.556
1993 Wilmanns M, Eisenberg D. Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha-barrel fold. Proceedings of the National Academy of Sciences of the United States of America. 90: 1379-1383. PMID 8433995 DOI: 10.1073/Pnas.90.4.1379  0.398
1993 Fujii G, Selsted ME, Eisenberg D. Defensins promote fusion and lysis of negatively charged membranes Protein Science. 2: 1301-1312. PMID 8401215 DOI: 10.1002/Pro.5560020813  0.314
1993 Schreuder HA, Knight S, Curmi PM, Andersson I, Cascio D, Sweet RM, Brändén CI, Eisenberg D. Crystal structure of activated tobacco rubisco complexed with the reaction-intermediate analogue 2-carboxy-arabinitol 1,5-bisphosphate. Protein Science : a Publication of the Protein Society. 2: 1136-46. PMID 8358296 DOI: 10.1002/Pro.5560020708  0.357
1993 Liaw SH, Jun G, Eisenberg D. Extending the diffraction limit of protein crystals: the example of glutamine synthetase from Salmonella typhimurium in the presence of its cofactor ATP. Protein Science. 2: 470-471. PMID 8095834 DOI: 10.1002/Pro.5560020319  0.344
1993 Hill CP, Osslund TD, Eisenberg D. The structure of granulocyte-colony-stimulating factor and its relationship to other growth factors Proceedings of the National Academy of Sciences of the United States of America. 90: 5167-5171. PMID 7685117 DOI: 10.1073/Pnas.90.11.5167  0.362
1993 Bowie JU, Eisenberg D. Inverted protein structure prediction Current Opinion in Structural Biology. 3: 437-444. DOI: 10.1016/S0959-440X(05)80118-6  0.631
1992 O'Keefe DO, Cabiaux V, Choe S, Eisenberg D, Collier RJ. pH-dependent insertion of proteins into membranes: B-chain mutation of diphtheria toxin that inhibits membrane translocation, Glu-349----Lys. Proceedings of the National Academy of Sciences of the United States of America. 89: 6202-6. PMID 1631109 DOI: 10.1073/Pnas.89.13.6202  0.494
1992 Choe S, Bennett MJ, Fujii G, Curmi PM, Kantardjieff KA, Collier RJ, Eisenberg D. The crystal structure of diphtheria toxin. Nature. 357: 216-22. PMID 1589020 DOI: 10.1038/357216A0  0.56
1992 Lüthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature. 356: 83-5. PMID 1538787 DOI: 10.1038/356083A0  0.616
1992 Liu Y, Peter D, Roghani A, Schuldiner S, Privé GG, Eisenberg D, Brecha N, Edwards RH. A cDNA that suppresses MPP+ toxicity encodes a vesicular amine transporter. Cell. 70: 539-51. PMID 1505023 DOI: 10.1016/0092-8674(92)90425-C  0.713
1992 Wesson L, Eisenberg D. Atomic solvation parameters applied to molecular dynamics of proteins in solution. Protein Science : a Publication of the Protein Society. 1: 227-35. PMID 1304905 DOI: 10.1002/Pro.5560010204  0.319
1992 Wilcox W, Eisenberg D. Thermodynamics of melittin tetramerization determined by circular dichroism and implications for protein folding. Protein Science. 1: 641-653. PMID 1304363 DOI: 10.1002/Pro.5560010510  0.32
1992 Fujii G, Horvath S, Woodward S, Eiserling F, Eisenberg D. A molecular model for membrane fusion based on solution studies of an amphiphilic peptide from HIV gp41. Protein Science : a Publication of the Protein Society. 1: 1454-64. PMID 1303764 DOI: 10.1002/Pro.5560011107  0.308
1992 Eisenberg D. John Edsall and Protein Science. Protein Science. 1: 1399-1401. PMID 1303760 DOI: 10.1002/Pro.5560011101  0.333
1992 Eisenberg D, Bowie JU, Lüthy R, Choe S. Three-dimensional profiles for analysing protein sequence-structure relationships. Faraday Discussions. 25-34. PMID 1290936 DOI: 10.1039/Fd9929300025  0.698
1992 Curmi PMG, Cascio D, Sweet RM, Eisenberg D, Schreuder H. Crystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase/oxygenase from tobacco refined at 2.0-A resolution. Journal of Biological Chemistry. 267: 16980-16989. DOI: 10.2210/Pdb3Rub/Pdb  0.353
1991 Hill CP, Yee J, Selsted ME, Eisenberg D. Crystal structure of defensin HNP-3, an amphiphilic dimer: Mechanisms of membrane permeabilization Science. 251: 1481-1485. PMID 2006422 DOI: 10.1126/Science.2006422  0.324
1991 Lüthy R, McLachlan AD, Eisenberg D. Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities. Proteins. 10: 229-39. PMID 1881879 DOI: 10.1002/Prot.340100307  0.409
1991 Bowie JU, Lüthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science (New York, N.Y.). 253: 164-70. PMID 1853201  0.604
1991 Fujii G, Choe SH, Bennett MJ, Eisenberg D. Crystallization of diphtheria toxin. Journal of Molecular Biology. 222: 861-4. PMID 1762153 DOI: 10.1016/0022-2836(91)90577-S  0.572
1990 Hill CP, Anderson DH, Wesson L, DeGrado WF, Eisenberg D. Crystal structure of alpha 1: implications for protein design. Science (New York, N.Y.). 249: 543-6. PMID 2382133 DOI: 10.1126/Science.2382133  0.364
1990 Eisenberg D, Wesson M. The most highly amphiphilic α-helices include two amino acid segments in human immunodeficiency virus glycoprotein 41 Biopolymers. 29: 171-177. PMID 2328285 DOI: 10.1002/Bip.360290122  0.304
1990 Gribskov M, Lothy R, Eisenberg D. [9] Profile analysis Methods in Enzymology. 183: 146-159. PMID 2314273 DOI: 10.1016/0076-6879(90)83011-W  0.339
1990 Anderson D, Raffioni S, Luporini P, Bradshaw RA, Eisenberg D. Crystallization of the Euplotes raikovi mating pheromone Er-1 Journal of Molecular Biology. 216: 1-2. PMID 2121998 DOI: 10.1016/S0022-2836(05)80055-5  0.334
1989 Eisenberg D, Hill CP. Protein crystallography: more surprises ahead. Trends in Biochemical Sciences. 14: 260-264. PMID 2672444 DOI: 10.1016/0968-0004(89)90059-5  0.397
1989 Rees DC, DeAntonio L, Eisenberg D. Hydrophobic organization of membrane proteins. Science (New York, N.Y.). 245: 510-3. PMID 2667138 DOI: 10.1126/Science.2667138  0.359
1989 Yamashita MM, Almassy RJ, Janson CA, Cascio D, Eisenberg D. Refined atomic model of glutamine synthetase at 3.5 Å resolution Journal of Biological Chemistry. 264: 17681-17690. PMID 2572586 DOI: 10.2210/Pdb2Gls/Pdb  0.346
1989 Gribskov M, Eisenberg D. 12 – Detection Of Protein Structural Features With Profile Analysis1 Techniques in Protein Chemistry. 108-117. DOI: 10.1016/B978-0-12-682001-0.50018-X  0.37
1988 Eisenberg D, Wilcox W, Eshita SM, Pryciak PM, Ho SP, DeGrado WF. The design, synthesis, and crystallization of an alpha-helical peptide. Proteins. 1: 16-22. PMID 3449847 DOI: 10.1002/Prot.340010105  0.304
1988 Gribskov M, Homyak M, Edenfield J, Eisenberg D. Profile scanning for three-dimensional structural patterns in protein sequences. Computer Applications in the Biosciences : Cabios. 4: 61-6. PMID 3383004 DOI: 10.1093/Bioinformatics/4.1.61  0.325
1988 Chapman MS, Suh SW, Curmi PM, Cascio D, Smith WW, Eisenberg DS. Tertiary structure of plant RuBisCO: domains and their contacts. Science (New York, N.Y.). 241: 71-4. PMID 3133767 DOI: 10.1126/Science.3133767  0.592
1987 Suh SW, Cascio D, Chapman MS, Eisenberg D. A crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase from Nicotiana tabacum in the activated state. Journal of Molecular Biology. 197: 363-5. PMID 3681999 DOI: 10.1016/0022-2836(87)90129-X  0.62
1987 Chapman MS, Suh SW, Cascio D, Smith WW, Eisenberg D. Sliding-layer conformational change limited by the quaternary structure of plant RuBisCO. Nature. 329: 354-6. PMID 3627277 DOI: 10.1038/329354A0  0.624
1987 Gribskov M, McLachlan AD, Eisenberg D. Profile analysis: detection of distantly related proteins. Proceedings of the National Academy of Sciences of the United States of America. 84: 4355-8. PMID 3474607 DOI: 10.1073/Pnas.84.13.4355  0.314
1987 Eisenberg D, Almassy RJ, Janson CA, Chapman MS, Suh SW, Cascio D, Smith WW. Some evolutionary relationships of the primary biological catalysts glutamine synthetase and RuBisCO. Cold Spring Harbor Symposia On Quantitative Biology. 52: 483-90. PMID 2900091 DOI: 10.1101/Sqb.1987.052.01.055  0.545
1987 Terwilliger TC, Kim S, Eisenberg D. Generalized method of determining heavy-atom positions using the difference Patterson function Acta Crystallographica Section a Foundations of Crystallography. 43: 1-5. DOI: 10.1107/S0108767387099999  0.514
1986 Eisenberg D, McLachlan AD. Solvation energy in protein folding and binding. Nature. 319: 199-203. PMID 3945310 DOI: 10.1038/319199A0  0.335
1986 Eisenberg D, Wilcox W, McLachlan AD. Hydrophobicity and amphiphilicity in protein structure. Journal of Cellular Biochemistry. 31: 11-7. PMID 3722276 DOI: 10.1002/Jcb.240310103  0.423
1986 Janson CA, Kayne PS, Almassy RJ, Grunstein M, Eisenberg D. Sequence of glutamine synthetase from Salmonella typhimurium and implications for the protein structure Gene. 46: 297-300. PMID 2879772 DOI: 10.1016/0378-1119(86)90415-4  0.304
1986 Chapman MS, Smith WW, Suh SW, Cascio D, Howard A, Hamlin R, Xuong NH, Eisenberg D. Structural studies of Rubisco from tobacco. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 313: 367-78. PMID 2878449  0.565
1984 Eisenberg D, Weiss RM, Terwilliger TC. The hydrophobic moment detects periodicity in protein hydrophobicity Proceedings of the National Academy of Sciences of the United States of America. 81: 140-144. PMID 6582470 DOI: 10.1073/Pnas.81.1.140  0.452
1984 Eisenberg D, Schwarz E, Komaromy M, Wall R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot Journal of Molecular Biology. 179: 125-142. PMID 6502707 DOI: 10.1016/0022-2836(84)90309-7  0.331
1984 Eisenberg D. Three-dimensional structure of membrane and surface proteins. Annual Review of Biochemistry. 53: 595-623. PMID 6383201 DOI: 10.1146/Annurev.Bi.53.070184.003115  0.334
1984 Janson CA, Almassy RJ, Westbrook EM, Eisenberg D. Isolation and crystallization of unadenylylated glutamine synthetase from Salmonella typhimurium. Archives of Biochemistry and Biophysics. 228: 512-8. PMID 6141768 DOI: 10.1016/0003-9861(84)90017-1  0.327
1984 Frey TG, Eisenberg D. Formation and structure of 1-, 3- and 6+1-stranded helical cables of glutamine synthetase International Journal of Biological Macromolecules. 6: 2-12. DOI: 10.1016/0141-8130(84)90040-0  0.38
1983 Sweet RM, Eisenberg D. Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure. Journal of Molecular Biology. 171: 479-488. PMID 6663622 DOI: 10.1016/0022-2836(83)90041-4  0.381
1982 Eisenberg D, Weiss RM, Terwilliger TC. The helical hydrophobic moment: a measure of the amphiphilicity of a helix. Nature. 299: 371-4. PMID 7110359 DOI: 10.1038/299371A0  0.351
1982 Terwilliger TC, Weissman L, Eisenberg D. The structure of melittin in the form I crystals and its implication for melittin's lytic and surface activities Biophysical Journal. 37: 353-361. PMID 7055627 DOI: 10.1016/S0006-3495(82)84683-3  0.33
1982 Eisenberg D, Weiss RM, Terwilliger TC, Wilcox W. Hydrophobic moments and protein structure Faraday Symposia of the Chemical Society. 17: 109. DOI: 10.1039/Fs9821700109  0.424
1981 Terwilliger TC, Eisenberg D. The structure of melittin. I. Structure determination and partial refinement. Journal of Biological Chemistry. 257: 6010-6015. PMID 7076661 DOI: 10.2210/Pdb1Mlt/Pdb  0.394
1980 Eisenberg D, Terwilliger TC, Tsui F. Structural studies of bee melittin Biophysical Journal. 32: 252-254. PMID 19431375 DOI: 10.1016/S0006-3495(80)84953-8  0.368
1980 Johal S, Bourque DP, Smith WW, Suh SW, Eisenberg D. Crystallization and characterization of ribulose 1,5-bisphosphate carboxylase/oxygenase from eight plant species. The Journal of Biological Chemistry. 255: 8873-80. PMID 7410399  0.547
1980 Burton ZF, Eisenberg D. A procedure for rapid isolation of both groE protein and glutamine synthetase from E. coli Archives of Biochemistry and Biophysics. 205: 478-488. PMID 6110407 DOI: 10.1016/0003-9861(80)90130-7  0.321
1979 Frank J, Goldfarb W, Eisenberg D, Baker TS. Addendum to "reconstruction of glutamine synthetase using computer averaging". Ultramicroscopy. 4: 247. PMID 38551 DOI: 10.1016/S0304-3991(79)90319-X  0.457
1978 Eisenberg D, Baker TS, Suh SW, Smith WW. Structural studies of ribulose 1,5-bisphosphate carboxylase/oxygenase. Basic Life Sciences. 11: 271-81. PMID 747602 DOI: 10.1007/978-1-4684-8106-8_17  0.699
1978 Frank J, Goldfarb W, Eisenberg D, Baker TS. Reconstruction of glutamine synthetase using computer averaging. Ultramicroscopy. 3: 283-90. PMID 32653 DOI: 10.1016/S0304-3991(78)80038-2  0.482
1978 Heidner EG, Frey TG, Held U, Weissman LJ, Fenna RE, Lei M, Harel M, Kabsch H, Sweet RM, Eisenberg D. New crystal forms of glutamine synthetase and implications for the molecular structure. Journal of Molecular Biology. 122: 163-73. PMID 28418 DOI: 10.1016/0022-2836(78)90033-5  0.325
1977 Baker TS, Eisenberg D, Eiserling F. Ribulose bisphosphate carboxylase: a two-layered, square-shaped molecule of symmetry 422. Science (New York, N.Y.). 196: 293-5. PMID 17756097 DOI: 10.1126/Science.196.4287.293  0.529
1977 Baker TS, Suh SW, Eisenberg D. Structure of ribulose-1,5-bisphosphate carboxylase-oxygenase: Form III crystals. Proceedings of the National Academy of Sciences of the United States of America. 74: 1037-41. PMID 16592389 DOI: 10.1073/Pnas.74.3.1037  0.705
1976 Frey TG, Eisenberg D, Eiserling FA. Glutamine synthetase forms three- and seven-stranded helical cables. Proceedings of the National Academy of Sciences of the United States of America. 72: 3402-6. PMID 242004 DOI: 10.1073/Pnas.72.9.3402  0.308
1976 Kabsch W, Kabsch H, Eisenberg D. Packing in a new crystalline form of glutamine synthetase from Escherichia coli. Journal of Molecular Biology. 100: 283-291. PMID 3654 DOI: 10.1016/S0022-2836(76)80064-2  0.302
1975 Scanlon WJ, Eisenberg D. Solvation of crystalline proteins: theory and its application to available data. Journal of Molecular Biology. 98: 485-502. PMID 1195396 DOI: 10.1016/S0022-2836(75)80082-9  0.348
1975 Baker TS, Eisenberg D, Eiserling FA, Weissman L. The structure of form I crystals of D-ribulose-1,5-diphosphate carboxylase. Journal of Molecular Biology. 91: 391-9. PMID 1152035 DOI: 10.1016/0022-2836(75)90267-3  0.542
1971 Dickerson RE, Takano T, Eisenberg D, Kallai OB, Samson L, Cooper A, Margoliash E. Ferricytochrome c. I. General features of the horse and bonito proteins at 2.8 A resolution. The Journal of Biological Chemistry. 246: 1511-35. PMID 5545094  0.652
1971 Heidner EG, Weber BH, Eisenberg D. Subunit Structure of Aldolase Science. 171: 677-680. PMID 5099718 DOI: 10.1126/Science.171.3972.677  0.345
1969 Dickerson RE, Eisenberg D, Varnum J, Kopka ML. PtCl24-: a methionine-specific label for protein crystallography. Journal of Molecular Biology. 45: 77-84. PMID 5387946  0.665
1969 Weinzierl JE, Eisenberg D, Dickerson RE. Refinement of protein phases with the Karle–Hauptman tangent formula Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry. 25: 380-387. DOI: 10.1107/S0567740869002275  0.672
1967 Dickerson RE, Kopka ML, Weinzierl J, Varnum J, Eisenberg D, Margoliash E. Location of the heme in horse heart ferricytochrome c by x-ray diffraction. The Journal of Biological Chemistry. 242: 3015-8. PMID 6027262  0.606
1963 EISENBERG DS, EDSALL JT. SPECTROPHOTOMETRIC TITRATIONS OF HUMAN SERUM ALBUMIN AND REDUCED CARBOXYMETHYLATED ALBUMIN. Science (New York, N.Y.). 142: 50-1. PMID 14057350 DOI: 10.1126/Science.142.3588.50  0.478
1963 Eisenberg D, Coulson CA. Energy of formation of d-defects in ice Nature. 199: 368-369. DOI: 10.1038/199368B0  0.463
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