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Katherine L.B. Borden, PhD - Related publications

Dalhousie University, Halifax, Nova Scotia, Canada 
 Mount Sinai School of Medicine, New York, NY 
 Université de Montréal, Montréal, Canada 
molecular basis of cancer
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chhipi-Shrestha JK, Schneider-Poetsch T, Suzuki T, Mito M, Khan K, Dohmae N, Iwasaki S, Yoshida M. Splicing modulators elicit global translational repression by condensate-prone proteins translated from introns. Cell Chemical Biology. PMID 34520743 DOI: 10.1016/j.chembiol.2021.07.015   
2021 Yueh LY, Tseng YT, Chu CY, Lo KY. The dedicated chaperones of eL43, Puf6 and Loc1, can also bind RPL43 mRNA and regulate the production of this ribosomal protein. Journal of Biochemistry. PMID 34661244 DOI: 10.1093/jb/mvab110   
2021 Akirtava C, McManus CJ. Control of translation by eukaryotic mRNA transcript leaders-Insights from high-throughput assays and computational modeling. Wiley Interdisciplinary Reviews. Rna. 12: e1623. PMID 32869519 DOI: 10.1002/wrna.1623   
2021 Kyriakopoulos AM, McCullough PA. Synthetic mRNAs; Their Analogue Caps and Contribution to Disease. Diseases (Basel, Switzerland). 9. PMID 34449596 DOI: 10.3390/diseases9030057   
2021 Baudin A, Xu X, Libich DS. The H, N and C resonance assignments of the C-terminal domain of Serpine mRNA binding protein 1 (SERBP1). Biomolecular Nmr Assignments. PMID 34436734 DOI: 10.1007/s12104-021-10046-3   
2021 Liang Z, Wen C, Jiang H, Ma S, Liu X. Protein Arginine Methyltransferase 5 Functions Interacting Proteins. Frontiers in Cell and Developmental Biology. 9: 725301. PMID 34513846 DOI: 10.3389/fcell.2021.725301   
2021 Kaur M, Sharma A, Singh G, Kumar S, Barnwal RP. Architectural and functional details of CF IA proteins involved in yeast 3'-end pre-mRNA processing and its significance for eukaryotes: A concise review. International Journal of Biological Macromolecules. PMID 34699898 DOI: 10.1016/j.ijbiomac.2021.10.129   
2021 Yang M, Chen J, Li X, Huang J, Wang Q, Wang S, Wei S, Qin Q. The transcription factor NFYC positively regulates expression of MHCIa in the red-spotted grouper (Epinephelus akaara). Developmental and Comparative Immunology. 104272. PMID 34600022 DOI: 10.1016/j.dci.2021.104272   
2021 Bheemireddy S, Sandhya S, Srinivasan N. Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins. Frontiers in Molecular Biosciences. 8: 654164. PMID 34409066 DOI: 10.3389/fmolb.2021.654164   
2021 Martin E, Vivori C, Rogalska M, Herrero J, Valcarcel J. Alternative splicing regulation of cell cycle genes by SPF45/SR140/CHERP complex controls cell proliferation. Rna (New York, N.Y.). PMID 34544891 DOI: 10.1261/rna.078935.121   
2021 Blake D, Lynch KW. The three as: Alternative splicing, alternative polyadenylation and their impact on apoptosis in immune function. Immunological Reviews. PMID 34368964 DOI: 10.1111/imr.13018   
2021 Lehman SL, Wilson ED, Camphausen K, Tofilon PJ. Translation Initiation Machinery as a Tumor Selective Target for Radiosensitization. International Journal of Molecular Sciences. 22. PMID 34639005 DOI: 10.3390/ijms221910664   
2021 Huang Y, Bai X, Guo Z, Dong H, Fu Y, Zhang H, Zhai G, Tian S, Wang Y, Zhang K. DNA-guided photoactivatable probe-based chemical proteomics reveals the reader protein of mRNA methylation. Iscience. 24: 103046. PMID 34553132 DOI: 10.1016/j.isci.2021.103046   
2021 Ren Y, Huo Y, Li W, He M, Liu S, Yang J, Zhao H, Xu L, Guo Y, Si Y, Zhao H, Rao S, Wang J, Ma Y, Wang X, et al. A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation. Genome Biology. 22: 290. PMID 34649616 DOI: 10.1186/s13059-021-02508-7   
2021 Kershaw CJ, Nelson MG, Lui J, Bates CP, Jennings MD, Hubbard SJ, Ashe MP, Grant CM. Integrated multi-omics reveals common properties underlying stress granule and P-body formation. Rna Biology. 1-19. PMID 34672913 DOI: 10.1080/15476286.2021.1976986   
2021 Kobayashi A, Clément MJ, Craveur P, El Hage K, de Matha Salone J, Bollot G, Pastré D, Maucuer A. Identification of a small molecule splicing inhibitor targeting UHM domains. The Febs Journal. PMID 34520118 DOI: 10.1111/febs.16199   
2021 Kang W, Wang Y, Yang W, Zhang J, Zheng H, Li D. Research Progress on the Structure and Function of G3BP. Frontiers in Immunology. 12: 718548. PMID 34526993 DOI: 10.3389/fimmu.2021.718548   
2021 Tora L, Vincent SD. What defines the maternal transcriptome? Biochemical Society Transactions. PMID 34415300 DOI: 10.1042/BST20201125   
2021 Petrenko N, Struhl K. Comparison of transcriptional initiation by RNA polymerase II across eukaryotic species. Elife. 10. PMID 34515029 DOI: 10.7554/eLife.67964   
2021 Neault N, O'Reilly S, Baig AT, Plaza-Diaz J, Azimi M, Farooq F, Baird SD, MacKenzie A. High-throughput kinome-RNAi screen identifies protein kinase R activator (PACT) as a novel genetic modifier of CUG foci integrity in myotonic dystrophy type 1 (DM1). Plos One. 16: e0256276. PMID 34520479 DOI: 10.1371/journal.pone.0256276   
2021 von Elsner L, Chai G, Schneeberger PE, Harms FL, Casar C, Qi M, Alawi M, Abdel-Salam GMH, Zaki MS, Arndt F, Yang X, Stanley V, Hempel M, Gleeson JG, Kutsche K. Biallelic FRA10AC1 variants cause a neurodevelopmental disorder with growth retardation. Brain : a Journal of Neurology. PMID 34694367 DOI: 10.1093/brain/awab403   
2021 Sun L, Wang W, Han C, Huang W, Sun Y, Fang K, Zeng Z, Yang Q, Pan Q, Chen T, Luo X, Chen Y. The oncomicropeptide APPLE promotes hematopoietic malignancy by enhancing translation initiation. Molecular Cell. PMID 34555354 DOI: 10.1016/j.molcel.2021.08.033   
2021 Chin A, Lécuyer E. Puromycin Labeling Coupled with Proximity Ligation Assays to Define Sites of mRNA Translation in Drosophila Embryos and Human Cells. Methods in Molecular Biology (Clifton, N.J.). 2381: 267-284. PMID 34590282 DOI: 10.1007/978-1-0716-1740-3_15   
2021 Baralle M, Baralle FE. Alternative Splicing and Liver Disease. Annals of Hepatology. 100534. PMID 34547477 DOI: 10.1016/j.aohep.2021.100534   
2021 Velthuijs N, Meldal B, Geessinck Q, Porras P, Medvedeva Y, Zubritskiy A, Orchard S, Logie C. Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1864: 194749. PMID 34425241 DOI: 10.1016/j.bbagrm.2021.194749   
2021 Liu Y, Zhao Y, Wu R, Chen Y, Chen W, Liu Y, Luo Y, Huang C, Zeng B, Liao X, Guo G, Wang Y, Wang X. mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation. Rna Biology. 1-11. PMID 34570675 DOI: 10.1080/15476286.2021.1980694   
2021 Umek T, Olsson T, Gissberg O, Saher O, Zaghloul EM, Lundin KE, Wengel J, Hanse E, Zetterberg H, Vizlin-Hodzic D, Smith CIE, Zain R. Oligonucleotides Targeting DNA Repeats Downregulate Gene Expression in Huntington's Patient-Derived Neural Model System. Nucleic Acid Therapeutics. PMID 34520257 DOI: 10.1089/nat.2021.0021   
2021 Wei Q. Bioinformatical identification of key genes regulated by IGF2BP2-mediated RNA N6-methyladenosine and prediction of prognosis in hepatocellular carcinoma. Journal of Gastrointestinal Oncology. 12: 1773-1785. PMID 34532127 DOI: 10.21037/jgo-21-306   
2021 Barreiro-Alonso A, Lamas-Maceiras M, Lorenzo-Catoira L, Pardo M, Yu L, Choudhary JS, Cerdán ME. HMGB1 Protein Interactions in Prostate and Ovary Cancer Models Reveal Links to RNA Processing and Ribosome Biogenesis through NuRD, THOC and Septin Complexes. Cancers. 13. PMID 34572914 DOI: 10.3390/cancers13184686   
2021 Silva J, Nina P, Romão L. Translation of Is Tightly Regulated by Upstream Open Reading Frames in Human Colorectal Cells. Biomedicines. 9. PMID 34440115 DOI: 10.3390/biomedicines9080911   
2021 Zhang X, Yang H, Li H, Chen T, Ruan Y, Ren C, Luo P, Wang Y, Liu B, Li H, Zhong P, Zhang J, Jiang X, Hu C. Molecular Identification of Anion Exchange Protein 3 in Pacific White Shrimp (): mRNA Profiles for Tissues, Ontogeny, Molting, and Ovarian Development and Its Potential Role in Stress-Induced Gill Damage. Frontiers in Physiology. 12: 726600. PMID 34658912 DOI: 10.3389/fphys.2021.726600   
2021 Patel D, Patel M, Datta S, Singh U. CGGBP1-dependent CTCF-binding sites restrict ectopic transcription. Cell Cycle (Georgetown, Tex.). 1-15. PMID 34585631 DOI: 10.1080/15384101.2021.1982508   
2021 Li H, Li J, Zhang X, Li J, Xi C, Wang W, Lu Y, Xuan L. Euphornin L promotes lipid clearance by dual regulation of LDLR and PCSK9. Experimental and Therapeutic Medicine. 22: 1381. PMID 34650629 DOI: 10.3892/etm.2021.10817   
2021 Felletti M, Romilly C, Wagner EGH, Jonas K. A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability. Elife. 10. PMID 34524083 DOI: 10.7554/eLife.71611   
2021 Blizard S, Park D, O'Toole N, Norooz S, Dela Torre M, Son Y, Holstein A, Austin S, Harman J, Haraszti S, Fared D, Xu M. Neuron-Specific IMP2 Overexpression by Synapsin Promoter-Driven AAV9: A Tool to Study Its Role in Axon Regeneration. Cells. 10. PMID 34685634 DOI: 10.3390/cells10102654   
2021 Bhardwaj R, Thakur JK, Kumar S. MedProDB: A database of Mediator proteins. Computational and Structural Biotechnology Journal. 19: 4165-4176. PMID 34527190 DOI: 10.1016/j.csbj.2021.07.031   
2021 Jibiki K, Kodama TS, Suenaga A, Kawase Y, Shibazaki N, Nomoto S, Nagasawa S, Nagashima M, Shimodan S, Kikuchi R, Okayasu M, Takashita R, Mehmood R, Saitoh N, Yoneda Y, et al. Importin α2 association with chromatin: Direct DNA binding via a novel DNA-binding domain. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34519142 DOI: 10.1111/gtc.12896   
2021 Qiu Y, Ching WK, Zou Q. Matrix factorization-based data fusion for the prediction of RNA-binding proteins and alternative splicing event associations during epithelial-mesenchymal transition. Briefings in Bioinformatics. PMID 34410342 DOI: 10.1093/bib/bbab332   
2021 Feng H, Wan C, Zhang Z, Chen H, Li Z, Jiang H, Yin M, Dong S, Dou D, Wang Y, Zheng X, Ye W. Specific interaction of an RNA-binding protein with the 3'-UTR of its target mRNA is critical to oomycete sexual reproduction. Plos Pathogens. 17: e1010001. PMID 34648596 DOI: 10.1371/journal.ppat.1010001   
2021 Guo T, Liu C, Meng F, Hu L, Fu X, Yang Z, Wang N, Jiang Q, Zhang X, Ma F. The m A reader MhYTP2 regulates MdMLO19 mRNA stability and antioxidant genes translation efficiency conferring powdery mildew resistance in apple. Plant Biotechnology Journal. PMID 34679252 DOI: 10.1111/pbi.13733   
2021 Herbert CJ, Labarre-Mariotte S, Cornu D, Sophie C, Panozzo C, Michel T, Dujardin G, Bonnefoy N. Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria. Nucleic Acids Research. PMID 34634819 DOI: 10.1093/nar/gkab789   
2021 Chu V, Feng Q, Lim Y, Shao S. Selective destabilization of polypeptides synthesized from NMD-targeted transcripts. Molecular Biology of the Cell. mbcE21080382. PMID 34586879 DOI: 10.1091/mbc.E21-08-0382   
2021 Abbas MN, Kausar S, Gul I, Ke XX, Dong Z, Lu X, Cui H. Suppressor of cytokine signalling 6 is a potential regulator of antimicrobial peptides in the Chinese oak silkworm, Antheraea pernyi. Molecular Immunology. 140: 12-21. PMID 34628136 DOI: 10.1016/j.molimm.2021.10.001   
2021 Choi K, Yang A, Baek J, Jeong H, Kang Y, Baek W, Kim JC, Kang M, Choi M, Ham Y, Son MJ, Han SB, Kim J, Jang JH, Ahn JS, et al. Regulation of Survival Motor Neuron Gene Expression by Calcium Signaling. International Journal of Molecular Sciences. 22. PMID 34638572 DOI: 10.3390/ijms221910234   
2021 Hao Q, Prasanth KV. Regulatory roles of nucleolus organizer region-derived long non-coding RNAs. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34436664 DOI: 10.1007/s00335-021-09906-z   
2021 Li Y, Li Q, Beuchat G, Zeng H, Zhang C, Chen LQ. Combined analyses of translatome and transcriptome in Arabidopsis reveal new players responding to magnesium deficiency. Journal of Integrative Plant Biology. PMID 34473403 DOI: 10.1111/jipb.13169   
2021 Li Y, Aksenova V, Tingey M, Yu J, Ma P, Arnaoutov A, Chen S, Dasso M, Yang W. Distinct roles of nuclear basket proteins in directing the passage of mRNA through the nuclear pore. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34504007 DOI: 10.1073/pnas.2015621118   
2021 Sun QX, Huang XN, Pan Y, Yao CL. Promoter analysis of TLR5M and TLR5S revealed NF-κB might be a conserved cis-element in TLR5S promoter of large yellow croaker. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 257: 110675. PMID 34637922 DOI: 10.1016/j.cbpb.2021.110675   
2021 García A, Maldonado G, González JL, Svitkin Y, Cantú D, García-Carrancá A, Sonenberg N, Hernández G. High-risk human papillomavirus-18 uses an mRNA sequence to synthesize oncoprotein E6 in tumors. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34615711 DOI: 10.1073/pnas.2108359118   
2021 Albano F, Tucci V, Blackshear PJ, Reale C, Roberto L, Russo F, Marotta P, Porreca I, Colella M, Mallardo M, de Felice M, Ambrosino C. ZFP36L2 Role in Thyroid Functionality. International Journal of Molecular Sciences. 22. PMID 34502288 DOI: 10.3390/ijms22179379