| Year |
Citation |
Score |
| 2009 |
Serres MH, Kerr AR, McCormack TJ, Riley M. Evolution by leaps: gene duplication in bacteria. Biology Direct. 4: 46. PMID 19930658 DOI: 10.1186/1745-6150-4-46 |
0.432 |
|
| 2008 |
Riley M, Staley JT, Danchin A, Wang TZ, Brettin TS, Hauser LJ, Land ML, Thompson LS. Genomics of an extreme psychrophile, Psychromonas ingrahamii. Bmc Genomics. 9: 210. PMID 18460197 DOI: 10.1186/1471-2164-9-210 |
0.352 |
|
| 2006 |
Serres MH, Riley M. Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments. Journal of Bacteriology. 188: 4601-9. PMID 16788168 DOI: 10.1128/Jb.01787-05 |
0.37 |
|
| 2006 |
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, et al. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Research. 34: 1-9. PMID 16397293 DOI: 10.1093/Nar/Gkj405 |
0.45 |
|
| 2005 |
Serres MH, Riley M. Gene fusions and gene duplications: relevance to genomic annotation and functional analysis. Bmc Genomics. 6: 33. PMID 15757509 DOI: 10.1186/1471-2164-6-33 |
0.431 |
|
| 2005 |
Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Riley M, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102 |
0.443 |
|
| 2004 |
Serres MH, Riley M. Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome. Omics : a Journal of Integrative Biology. 8: 306-21. PMID 15703478 DOI: 10.1089/Omi.2004.8.306 |
0.402 |
|
| 2004 |
Serres MH, Goswami S, Riley M. GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins. Nucleic Acids Research. 32: D300-2. PMID 14681418 DOI: 10.1093/Nar/Gkh087 |
0.373 |
|
| 2003 |
Voit EO, Riley M. Extending knowledge of Escherichia coli metabolism by modeling and experiment. Genome Biology. 4: 235. PMID 14611652 DOI: 10.1186/Gb-2003-4-11-235 |
0.407 |
|
| 2002 |
Liang P, Labedan B, Riley M. Physiological genomics of Escherichia coli protein families. Physiological Genomics. 9: 15-26. PMID 11948287 DOI: 10.1152/Physiolgenomics.00086.2001 |
0.371 |
|
| 2002 |
Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S. The EcoCyc Database. Nucleic Acids Research. 30: 56-8. PMID 11752253 DOI: 10.1093/Nar/30.1.56 |
0.356 |
|
| 2002 |
Liang P, Riley M. A comparative genomics approach for studying ancestral proteins and evolution. Advances in Applied Microbiology. 50: 39-72. PMID 11677689 DOI: 10.1016/S0065-2164(01)50003-9 |
0.335 |
|
| 2001 |
Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M. A functional update of the Escherichia coli K-12 genome Genome Biology. 2: RESEARCH0035. PMID 11574054 DOI: 10.1186/Gb-2001-2-9-Research0035 |
0.458 |
|
| 2001 |
Nahum LA, Riley M. Divergence of function in sequence-related groups of Escherichia coli proteins. Genome Research. 11: 1375-81. PMID 11483578 DOI: 10.1101/Gr.180901 |
0.399 |
|
| 2001 |
Riley M, Serres MH. Interim report on genomics of Escherichia coli. Annual Review of Microbiology. 54: 341-411. PMID 11018132 DOI: 10.1146/Annurev.Micro.54.1.341 |
0.473 |
|
| 2000 |
Serres MH, Riley M. MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. Microbial & Comparative Genomics. 5: 205-222. PMID 11471834 DOI: 10.1089/Omi.1.2000.5.205 |
0.392 |
|
| 2000 |
Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, ... ... Riley M, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/Pnas.190337797 |
0.401 |
|
| 2000 |
Karp PD, Riley M, Saier M, Paulsen IT, Paley SM, Pellegrini-Toole A. The EcoCyc and MetaCyc databases. Nucleic Acids Research. 28: 56-9. PMID 10592180 DOI: 10.1093/Nar/28.1.56 |
0.315 |
|
| 1998 |
Riley M. Systems for categorizing functions of gene products. Current Opinion in Structural Biology. 8: 388-92. PMID 9666336 DOI: 10.1016/S0959-440X(98)80074-2 |
0.37 |
|
| 1998 |
Riley M. Genes and proteins of Escherichia coli K-12. Nucleic Acids Research. 26: 54. PMID 9399799 DOI: 10.1093/Nar/26.1.54 |
0.457 |
|
| 1998 |
Karp PD, Riley M, Paley SM, Pellegrini-Toole A, Krummenacker M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Research. 26: 50-3. PMID 9399798 DOI: 10.1093/Nar/26.1.50 |
0.386 |
|
| 1997 |
Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, et al. The complete genome sequence of Escherichia coli K-12 Science. 277: 1453-1462. PMID 9278503 DOI: 10.1126/Science.277.5331.1453 |
0.451 |
|
| 1997 |
Riley M, Labedan B. Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module. Journal of Molecular Biology. 268: 857-68. PMID 9180377 DOI: 10.1006/Jmbi.1997.1003 |
0.392 |
|
| 1997 |
Riley M. Genes and proteins of Escherichia coli K-12 (GenProtEC). Nucleic Acids Research. 25: 51-2. PMID 9016503 DOI: 10.1093/nar/25.1.51 |
0.353 |
|
| 1996 |
Riley M, Space DB. Genes and proteins of Escherichia coli (GenProtEc). Nucleic Acids Research. 24: 40. PMID 8594596 DOI: 10.1093/Nar/24.1.40 |
0.43 |
|
| 1996 |
Labedan B, Riley M. Gene products of Escherichia coli: sequence comparisons and common ancestries. Molecular Biology and Evolution. 12: 980-7. PMID 8524050 DOI: 10.1093/Oxfordjournals.Molbev.A040291 |
0.453 |
|
| 1995 |
Labedan B, Riley M. Widespread protein sequence similarities: origins of Escherichia coli genes. Journal of Bacteriology. 177: 1585-8. PMID 7883716 DOI: 10.1128/Jb.177.6.1585-1588.1995 |
0.434 |
|
| 1981 |
Ostapchuk P, Anilionis A, Riley M. Conserved genes in enteric bacteria are not identical. Molecular & General Genetics : Mgg. 180: 475-7. PMID 6162076 DOI: 10.1007/BF00425864 |
0.331 |
|
| 1978 |
Riley M, Anilionis A. Evolution of the bacterial genome. Annual Review of Microbiology. 32: 519-60. PMID 360975 DOI: 10.1146/Annurev.Mi.32.100178.002511 |
0.386 |
|
| 1978 |
Riley M, Solomon L, Zipkas D. Relationship between gene function and gene location in Escherichia coli. Journal of Molecular Evolution. 11: 47-56. PMID 351197 DOI: 10.1007/BF01768024 |
0.314 |
|
| 1975 |
Zipkas D, Riley M. Proposal concerning mechanism of evolution of the genome of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 72: 1354-8. PMID 1093179 DOI: 10.1073/pnas.72.4.1354 |
0.325 |
|
| 1965 |
Gartner TK, Riley M. Genetic Analysis of Tryptophanase Mutants of Escherichia coli Journal of Bacteriology. 89: 319-325. DOI: 10.1128/Jb.89.2.319-325.1965 |
0.392 |
|
| 1962 |
RILEY M, PARDEE AB. beta-Galactosidase formation following decay of 32P in Escherichia coli zygotes. Journal of Molecular Biology. 5: 63-75. PMID 14492298 DOI: 10.1016/S0022-2836(62)80061-8 |
0.461 |
|
| 1962 |
RILEY M, PARDEE AB. Nutritional effects on frequencies of bacterial recombination. Journal of Bacteriology. 83: 1332-5. PMID 14492297 DOI: 10.1128/Jb.83.6.1332-1335.1962 |
0.462 |
|
| 1962 |
RILEY M, PARDEE AB. Gene expression: its specificity and regulation. Annual Review of Microbiology. 16: 1-34. PMID 13973912 DOI: 10.1146/Annurev.Mi.16.100162.000245 |
0.49 |
|
| 1960 |
RUSHIZKY GW, RILEY M, PRESTIDGE LS, PARDEE AB. Inactivation of enzyme formation by ultraviolet light. I. Action spectra and size of the sensitive unit. Biochimica Et Biophysica Acta. 45: 70-6. PMID 13744786 DOI: 10.1016/0006-3002(60)91426-8 |
0.391 |
|
| 1960 |
Riley M, Pardee AB, Jacob F, Monod J. On the expression of a structural gene Journal of Molecular Biology. 2: 216-225. DOI: 10.1016/S0022-2836(60)80039-3 |
0.492 |
|
| Show low-probability matches. |
