Year |
Citation |
Score |
2024 |
Shadman H, Ziebarth JD, Gallops CE, Luo R, Li Z, Chen HF, Wang Y. Map Conformational Landscapes of Intrinsically Disordered Proteins with Polymer Physics Quantities. Biophysical Journal. PMID 38615193 DOI: 10.1016/j.bpj.2024.04.010 |
0.646 |
|
2024 |
Oikeh E, Ziebarth J, Dinar MAM, Kirchhoff D, Aronova A, Dziubla TD, Wang Y, DeRouchey JE. DNA Packaging and Polycation Length Determine DNA Susceptibility to Free Radical Damage in Condensed DNA. The Journal of Physical Chemistry. B. PMID 38557033 DOI: 10.1021/acs.jpcb.3c06116 |
0.64 |
|
2024 |
Yi CH, Taylor ML, Ziebarth J, Wang Y. Predictive Models and Impact of Interfacial Contacts and Amino Acids on Protein-Protein Binding Affinity. Acs Omega. 9: 3454-3468. PMID 38284090 DOI: 10.1021/acsomega.3c06996 |
0.632 |
|
2022 |
Shadman H, Gallops CE, Ziebarth JD, DeRouchey JE, Wang Y. Exploring Structures and Dynamics of Protamine Molecules through Molecular Dynamics Simulations. Acs Omega. 7: 42083-42095. PMID 36440140 DOI: 10.1021/acsomega.2c04227 |
0.68 |
|
2020 |
Gallops CE, Ziebarth JD, Wang Y. Coarse-grained Simulations of the Impact of Chain Length and Stiffness on the Formation and Aggregation of Polyelectrolyte Complexes. Macromolecular Theory and Simulations. 29. PMID 36117803 DOI: 10.1002/mats.202000015 |
0.717 |
|
2020 |
Gallops CE, Ziebarth JD, Wang Y. Coarse‐Grained Simulations of the Impact of Chain Length and Stiffness on the Formation and Aggregation of Polyelectrolyte Complexes Macromolecular Theory and Simulations. 29: 2000015. DOI: 10.1002/Mats.202000015 |
0.72 |
|
2019 |
Bhardwaj S, Barr J, Chaffin E, Huang X, Wang Y. Near-field and far-field optical properties of magnetic plasmonic core-shell nanoparticles with non-spherical shapes: A discrete dipole approximation study Aip Advances. 9: 25021. DOI: 10.1063/1.5087705 |
0.351 |
|
2018 |
Huang X, Liu Y, Barr J, Song J, He Z, Wang Y, Nie Z, Xiong Y, Chen X. Controllable self-assembled plasmonic vesicle-based three-dimensional SERS platform for picomolar detection of hydrophobic contaminants. Nanoscale. PMID 29971281 DOI: 10.1039/C8Nr02778A |
0.406 |
|
2017 |
Ziebarth JD, Kennetz DR, Walker NJ, Wang Y. Structural Comparisons of PEI/DNA and PEI/siRNA Complexes Revealed With Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 28145711 DOI: 10.1021/Acs.Jpcb.6B10775 |
0.713 |
|
2016 |
Ziebarth JD, Wang Y. Interactions of complex polymers with nanoporous substrate. Soft Matter. PMID 27263839 DOI: 10.1039/C6Sm00768F |
0.729 |
|
2016 |
Kwizera EA, Chaffin E, Shen X, Chen J, Zou Q, Wu Z, Gai Z, Bhana S, O'Connor R, Wang L, Adhikari H, Mishra SR, Wang Y, Huang X. Size- and Shape-Controlled Synthesis and Properties of Magnetic-Plasmonic Core-Shell Nanoparticles. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 120: 10530-10546. PMID 27239246 DOI: 10.1021/Acs.Jpcc.6B00875 |
0.358 |
|
2016 |
Ziebarth JD, Gardiner AA, Wang Y, Jeong Y, Ahn J, Jin Y, Chang T. Comparison of Critical Adsorption Points of Ring Polymers with Linear Polymers Macromolecules. 49: 8780-8788. DOI: 10.1021/Acs.Macromol.6B01925 |
0.73 |
|
2015 |
Zhu Y, Ziebarth J, Fu C, Wang Y. A Monte Carlo study on LCCC characterization of graft copolymers at the critical condition of side chains Polymer (United Kingdom). 67: 47-54. DOI: 10.1016/J.Polymer.2015.04.067 |
0.727 |
|
2014 |
Luo MB, Ziebarth JD, Wang Y. Interplay of Coil-Globule Transition and Surface Adsorption of a Lattice HP Protein Model. The Journal of Physical Chemistry. B. PMID 25458556 DOI: 10.1021/Jp506126D |
0.703 |
|
2014 |
Chaffin EA, Bhana S, O'Connor RT, Huang X, Wang Y. Impact of core dielectric properties on the localized surface plasmonic spectra of gold-coated magnetic core-shell nanoparticles. The Journal of Physical Chemistry. B. 118: 14076-84. PMID 25010347 DOI: 10.1021/Jp505202K |
0.368 |
|
2014 |
Robbins TJ, Ziebarth JD, Wang Y. Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson-Boltzmann approach. Biopolymers. 101: 834-48. PMID 24443090 DOI: 10.1002/Bip.22461 |
0.702 |
|
2013 |
Lott BB, Wang Y, Nakazato T. A comparative study of ribosomal proteins: linkage between amino acid distribution and ribosomal assembly. Bmc Biophysics. 6: 13. PMID 24152303 DOI: 10.1186/2046-1682-6-13 |
0.389 |
|
2013 |
Xu B, Schones DE, Wang Y, Liang H, Li G. A structural-based strategy for recognition of transcription factor binding sites. Plos One. 8: e52460. PMID 23320072 DOI: 10.1371/Journal.Pone.0052460 |
0.363 |
|
2013 |
Zhang R, Wang Y, Ji Y, Shi BJ, Zhang ZP, Zhang HY, Yang M, Wang YM. Quantitative analysis of oleic acid and three types of polyethers according to the number of hydroxy end groups in Polysorbate 80 by hydrophilic interaction chromatography at critical conditions. Journal of Chromatography. A. 1272: 73-80. PMID 23261069 DOI: 10.1016/J.Chroma.2012.11.070 |
0.39 |
|
2013 |
Robbins TJ, Wang Y. Effect of initial ion positions on the interactions of monovalent and divalent ions with a DNA duplex as revealed with atomistic molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 31: 1311-23. PMID 23153112 DOI: 10.1080/07391102.2012.732344 |
0.385 |
|
2013 |
Robbins TJ, Wang Y. 88 Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamic simulation and Poisson–Boltzmann approach Journal of Biomolecular Structure & Dynamics. 31: 56-57. DOI: 10.1080/07391102.2013.786522 |
0.411 |
|
2013 |
Robbins TJ, Whitakera NA, Wang Y. 194 Energetics and dynamics of adenine protonation in HIV-1’s dimerization initiation site Journal of Biomolecular Structure & Dynamics. 31: 126-127. DOI: 10.1080/07391102.2013.786436 |
0.363 |
|
2013 |
Lee S, Lee H, Thieu L, Jeong Y, Chang T, Fu C, Zhu Y, Wang Y. HPLC Characterization of Hydrogenous Polystyrene-block-deuterated polystyrene Utilizing the Isotope Effect Macromolecules. 46: 9114-9121. DOI: 10.1021/Ma4018247 |
0.442 |
|
2013 |
Yang X, Zhu Y, Wang Y. Can the individual block in block copolymer be made chromatographically “invisible” at the critical condition of its corresponding homopolymer? Polymer. 54: 3730-3736. DOI: 10.1016/J.Polymer.2013.05.018 |
0.472 |
|
2013 |
Robbins TJ, Wang Y, Yao Q, Wang Z, Cheng J, Li Y. Vibrational spectra, DFT calculations, and conformations of 5′-chloro-1-isopropyl-7-azaindirubin-3′-oxime Journal of Molecular Structure. 1048: 51-58. DOI: 10.1016/J.Molstruc.2013.05.012 |
0.364 |
|
2012 |
Wu B, Chen WR, Egami T, Li X, Liu Y, Wang Y, Do C, Porcar L, Hong K, Liu L, Smith GS, Smith SC. Molecular dynamics and neutron scattering study of the dependence of polyelectrolyte dendrimer conformation on counterion behavior. The Journal of Chemical Physics. 137: 064902. PMID 22897306 DOI: 10.1063/1.4742190 |
0.631 |
|
2012 |
Bhana S, Rai BK, Mishra SR, Wang Y, Huang X. Synthesis and properties of near infrared-absorbing magnetic-optical nanopins. Nanoscale. 4: 4939-42. PMID 22806589 DOI: 10.1039/C2Nr31291C |
0.359 |
|
2012 |
Burton B, Zimmermann MT, Jernigan RL, Wang Y. A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly. Plos Computational Biology. 8: e1002530. PMID 22654657 DOI: 10.1371/Journal.Pcbi.1002530 |
0.4 |
|
2012 |
Wu B, Kerkeni B, Egami T, Do C, Liu Y, Wang Y, Porcar L, Hong K, Smith SC, Liu EL, Smith GS, Chen WR. Structured water in polyelectrolyte dendrimers: understanding small angle neutron scattering results through atomistic simulation. The Journal of Chemical Physics. 136: 144901. PMID 22502544 DOI: 10.1063/1.3697479 |
0.621 |
|
2012 |
Zhu Y, Yu H, Wang Y, Cui J, Kong W, Jiang W. Multicompartment micellar aggregates of linear ABC amphiphiles in solvents selective for the C block: a Monte Carlo simulation Soft Matter. 8: 4695-4707. DOI: 10.1039/C2Sm07324B |
0.447 |
|
2012 |
Burton B, Zimmerman MT, Jernigan RL, Wang Y. Linkage Between Dynamics and Assembly of Ribosomal Proteins Biophysical Journal. 102: 450a. DOI: 10.1016/J.Bpj.2011.11.2469 |
0.401 |
|
2011 |
Wang Y, Ziebarth J. Multiscale molecular modeling and rational design of polymer based gene delivery vectors. Journal of Controlled Release : Official Journal of the Controlled Release Society. 152: e174-6. PMID 22195833 DOI: 10.1016/J.Jconrel.2011.08.072 |
0.734 |
|
2011 |
Zhu Y, Ziebarth JD, Wang Y. Dependence of critical condition in liquid chromatography on the pore size of column substrates Polymer. 52: 3219-3225. DOI: 10.1016/J.Polymer.2011.04.059 |
0.716 |
|
2011 |
Macko T, Brüll R, Wang Y, Coto B, Suarez I. Characterization of ethylene‐propylene copolymers with high‐temperature gradient adsorption liquid chromatography and CRYSTAF Journal of Applied Polymer Science. 122: 3211-3217. DOI: 10.1002/App.34432 |
0.449 |
|
2010 |
Macko T, Brüll R, Zhu Y, Wang Y. A review on the development of liquid chromatography systems for polyolefins. Journal of Separation Science. 33: 3446-54. PMID 21031462 DOI: 10.1002/Jssc.201000516 |
0.413 |
|
2010 |
Wang Y, Masur A, Zhu Y, Ziebarth J. Partitioning of star branched polymers into pores at three chromatography conditions. Journal of Chromatography. A. 1217: 6102-9. PMID 20728895 DOI: 10.1016/J.Chroma.2010.07.068 |
0.746 |
|
2010 |
Ziebarth J, Wang Y. Coarse-grained molecular dynamics simulations of DNA condensation by block copolymer and formation of core-corona structures. The Journal of Physical Chemistry. B. 114: 6225-32. PMID 20411959 DOI: 10.1021/Jp908327Q |
0.743 |
|
2010 |
Ziebarth JD, Wang Y. Understanding the protonation behavior of linear polyethylenimine in solutions through Monte Carlo simulations. Biomacromolecules. 11: 29-38. PMID 19954222 DOI: 10.1021/Bm900842D |
0.711 |
|
2010 |
Patel B, Ziebarth JD, Wang Y. Effects of Competition on Selective Adsorption of Heteropolymers onto Heterogeneous Surfaces Macromolecules. 43: 2069-2075. DOI: 10.1021/Ma9023334 |
0.706 |
|
2010 |
Li Z, Li Y, Wang Y, Sun Z, An L. Transport of Star-Branched Polymers in Nanoscale Pipe Channels Simulated with Dissipative Particle Dynamics Simulation Macromolecules. 43: 5896-5903. DOI: 10.1021/Ma100734R |
0.474 |
|
2010 |
Zhu Y, Ziebarth J, Macko T, Wang Y. How well can one separate copolymers according to both chemical compositions and sequence distributions? Macromolecules. 43: 5888-5895. DOI: 10.1021/Ma1007336 |
0.737 |
|
2009 |
Ziebarth J, Wang Y. Molecular dynamics simulations of DNA-polycation complex formation. Biophysical Journal. 97: 1971-83. PMID 19804728 DOI: 10.1016/J.Bpj.2009.03.069 |
0.706 |
|
2009 |
Macko T, Pasch H, Wang Y. Liquid chromatographic separation of olefin oligomers and its relation to separation of polyolefins - An overview Macromolecular Symposia. 282: 93-100. DOI: 10.1002/Masy.200950810 |
0.414 |
|
2008 |
Yan A, Wang Y, Kloczkowski A, Jernigan RL. Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome. Journal of Chemical Theory and Computation. 4: 1757-1767. PMID 19771145 DOI: 10.1021/Ct800223G |
0.357 |
|
2008 |
Wang Y, Jiang W, Miller S, Eckstein E. Dissipative particle dynamics simulation of on-chip hydrodynamic chromatography. Journal of Chromatography. A. 1198: 140-7. PMID 18541255 DOI: 10.1016/J.Chroma.2008.05.055 |
0.517 |
|
2008 |
Huang J, Luo M, Wang Y. Dissipative particle dynamics simulation on a ternary system with nanoparticles, double-hydrophilic block copolymers, and solvent. The Journal of Physical Chemistry. B. 112: 6735-41. PMID 18471006 DOI: 10.1021/Jp710567F |
0.427 |
|
2008 |
Ziebarth JD, Williams J, Wang Y. Selective Adsorption of Heteropolymer onto Heterogeneous Surfaces: Interplay between Sequences and Surface Patterns Macromolecules. 41: 4929-4936. DOI: 10.1021/Ma800212N |
0.704 |
|
2008 |
Im K, Park HW, Kim Y, Ahn S, Chang T, Lee K, Lee HJ, Ziebarth J, Wang Y. Retention behavior of star-shaped polystyrene near the chromatographic critical condition Macromolecules. 41: 3375-3383. DOI: 10.1021/Ma702377F |
0.716 |
|
2007 |
Huang J, Wang Y. Control of aggregation of nanoparticles by double-hydrophilic block copolymers: a dissipative particle dynamics study. The Journal of Physical Chemistry. B. 111: 7735-41. PMID 17579392 DOI: 10.1021/Jp070160Y |
0.42 |
|
2007 |
Millan JA, Jiang W, Laradji M, Wang Y. Pressure driven flow of polymer solutions in nanoscale slit pores. The Journal of Chemical Physics. 126: 124905. PMID 17411159 DOI: 10.1063/1.2711435 |
0.465 |
|
2007 |
Jiang W, Huang J, Wang Y, Laradji M. Hydrodynamic interaction in polymer solutions simulated with dissipative particle dynamics. The Journal of Chemical Physics. 126: 044901. PMID 17286503 DOI: 10.1063/1.2428307 |
0.505 |
|
2007 |
Ziebarth JD, Wang Y, Polotsky A, Luo M. Dependence of the Critical Adsorption Point on Surface and Sequence Disorders for Self-Avoiding Walks Interacting with a Planar Surface Macromolecules. 40: 3498-3504. DOI: 10.1021/Ma070235W |
0.705 |
|
2005 |
Jiang W, Khan S, Wang Y. Retention Behaviors of Block Copolymers in Liquid Chromatography at the Critical Condition Macromolecules. 38: 7514-7520. DOI: 10.1021/Ma050899A |
0.47 |
|
2005 |
Ziebarth J, Orelli S, Wang Y. The adsorption and partitioning of self-avoiding walk polymer chains into pores from a bulk theta solution Polymer. 46: 10450-10456. DOI: 10.1016/J.Polymer.2005.07.064 |
0.753 |
|
2004 |
Jiang W, Wang Y. Thermodynamics and partitioning of homopolymers into a slit-A grand canonical Monte Carlo simulation study. The Journal of Chemical Physics. 121: 3905-13. PMID 15303959 DOI: 10.1063/1.1777223 |
0.488 |
|
2004 |
Wang Y. Confinement free energy and chain conformations of homopolymers confined between two repulsive walls. The Journal of Chemical Physics. 121: 3898-904. PMID 15303958 DOI: 10.1063/1.1777222 |
0.479 |
|
2004 |
Orelli S, Jiang W, Wang Y. A computational investigation of the critical condition used in the liquid chromatography of polymers Macromolecules. 37: 10073-10078. DOI: 10.1021/Ma048497A |
0.47 |
|
2004 |
Teraoka I, Wang Y. Computer simulation studies on overlapping polymer chains confined in narrow channels Polymer. 45: 3835-3843. DOI: 10.1016/J.Polymer.2004.03.070 |
0.491 |
|
2004 |
Wang Y, Howard D, Gong Y. Partitioning of polymers into pores with surface interactions at dilute solution limit Polymer. 45: 313-320. DOI: 10.1016/J.Polymer.2003.11.012 |
0.491 |
|
2002 |
Gong Y, Wang Y. Partitioning of Polymers into Pores near the Critical Adsorption Point Macromolecules. 35: 7492-7498. DOI: 10.1021/Ma0205461 |
0.467 |
|
2002 |
Cifra P, Wang Y, Teraoka I. Comparison of partitioning of a bimodal polymer mixture into micropores in good and Θ solvents. A Monte Carlo study Macromolecules. 35: 1446-1450. DOI: 10.1021/Ma010963Y |
0.477 |
|
2002 |
Wang Y, Lin Q, Cifra P, Teraoka I. Partitioning of bimodal polymer mixtures into a slit: Effect of slit width, composition and pore-to-bulk volume ratio Colloids and Surfaces a: Physicochemical and Engineering Aspects. 206: 305-312. DOI: 10.1016/S0927-7757(02)00047-X |
0.478 |
|
2002 |
Teraoka I, Cifra P, Wang Y. Polymer chains in good solvent facing impenetrable walls: What is the distance to the wall in lattice Monte Carlo simulations Colloids and Surfaces a: Physicochemical and Engineering Aspects. 206: 299-303. DOI: 10.1016/S0927-7757(02)00046-8 |
0.409 |
|
2001 |
Teraoka I, Wang Y. Effective-medium Gaussian-chain theory for semidilute polymer solutions confined to a slit Journal of Chemical Physics. 115: 1105-1114. DOI: 10.1063/1.1379074 |
0.392 |
|
2001 |
Teraoka I, Cifra P, Wang Y. What is the distance to the wall in lattice simulations? Macromolecules. 34: 7121-7126. DOI: 10.1021/Ma010158J |
0.379 |
|
2001 |
Wang Y, Teraoka I, Cifra P. Lattice Monte Carlo simulation for the partitioning of a bimodal polymer mixture into a slit Macromolecules. 34: 127-133. DOI: 10.1021/Ma001074Y |
0.441 |
|
2001 |
Su WY, Wang Y, Min K, Quirk RP. In situ copolymerization and compatibilization of polyester and polystyrene blends. I. Synthesis of functionalized polystyrenes and the reactions with polyester Polymer. 42: 5107-5119. DOI: 10.1016/S0032-3861(00)00776-X |
0.343 |
|
2000 |
Cifra P, Bleha T, Wang Y, Teraoka I. Weak-to-strong penetration transition of macromolecules into a slit in theta solvent Journal of Chemical Physics. 113: 8313-8318. DOI: 10.1063/1.1314340 |
0.417 |
|
2000 |
Wang Y, Teraoka I. Structures and thermodynamics of nondilute polymer solutions confined between parallel plates Macromolecules. 33: 3478-3484. DOI: 10.1021/Ma991856V |
0.35 |
|
2000 |
Teraoka I, Wang Y. Crossover from two- to three-dimensional contraction of polymer chains in semidilute solutions confined to a narrow slit Macromolecules. 33: 6901-6903. DOI: 10.1021/Ma0006373 |
0.362 |
|
2000 |
Doruker P, Wang Y, Mattice WL. Simulation of the random scission of C-C bonds in the initial stage of the thermal degradation of polyethylene Computational and Theoretical Polymer Science. 11: 155-166. DOI: 10.1016/S1089-3156(99)00078-1 |
0.516 |
|
1997 |
Talsania SK, Wang Y, Rajagopalan R, Mohanty KK. Monte Carlo Simulations for Micellar Encapsulation Journal of Colloid and Interface Science. 190: 92-103. PMID 9241146 DOI: 10.1006/Jcis.1997.4868 |
0.335 |
|
1997 |
Wang Y, Teraoka I. Computer Simulation of Semidilute Polymer Solutions in Confined Geometry: Pore as a Microscopic Probe Macromolecules. 30: 8473-8477. DOI: 10.1021/Ma970741T |
0.423 |
|
1997 |
Wang Y, Diermeier RG, Rajagopalan R. Exchange Kinetics in Spherical Geometry Langmuir. 13: 2348-2353. DOI: 10.1021/La9607666 |
0.356 |
|
1996 |
Wang Y, Rajagopalan R. Dynamic properties of homopolymer layers adsorbed on a solid surface Journal of Chemical Physics. 105: 696-705. DOI: 10.1063/1.471925 |
0.396 |
|
1995 |
Wang Y, Rajagopalan R, Mattice WL. Kinetics of detachment of homopolymers from a solid surface Physical Review Letters. 74: 2503-2506. DOI: 10.1103/Physrevlett.74.2503 |
0.546 |
|
1995 |
Wang Y, Rajagopalan R, Mattice WL. The exchange kinetics of macromolecules adsorbed on a solid surface: A theoretical investigation Macromolecules. 28: 7058-7063. DOI: 10.1021/Ma00125A004 |
0.546 |
|
1995 |
Wang Y, Kausch CM, Chun M, Quirk RP, Mattice WL. Exchange of Chains between Micelles of Labeled Polystyrene-block-poly(oxyethylene) As Monitored by Nonradiative Singlet Energy Transfer Macromolecules. 28: 904-911. DOI: 10.1021/Ma00108A016 |
0.536 |
|
1994 |
Adriani P, Wang Y, Mattice WL. Influence of chain stiffness on the micellization of block copolymers in a selective solvent as observed in Monte Carlo simulations The Journal of Chemical Physics. 100: 7718-7721. DOI: 10.1063/1.466866 |
0.567 |
|
1994 |
Wang Y, Mattice WL. Adsorption of homopolymers on a solid surface. A comparison between Monte Carlo simulation and the Scheutjens-Fleer mean-field lattice theory Langmuir. 10: 2281-2288. DOI: 10.1021/La00019A043 |
0.576 |
|
1993 |
Wang Y, Li Y, Mattice WL. Simulation of the adsorption of unsymmetric diblock copolymers at the interface between the two monomeric homopolymers The Journal of Chemical Physics. 99: 4068-4075. DOI: 10.1063/1.464367 |
0.576 |
|
1993 |
Wang Y, Mattice WL, Napper DH. Simulation of the formation of micelles by diblock copolymers under weak segregation Langmuir. 9: 66-70. DOI: 10.1021/La00025A017 |
0.559 |
|
1992 |
Wang Y, Mattice WL, Napper DH. Simulation of the self-assembly of symmetric triblock copolymers in dilute solution Macromolecules. 25: 4073-4077. DOI: 10.1021/Ma00042A004 |
0.548 |
|
1992 |
Wang Y, Mattice WL. Intramolecular vs intermolecular formation of bityrosine upon photoreaction of poly(l-tyrosine) in dilute aqueous solution Polymer Bulletin. 28: 345-349. DOI: 10.1007/Bf00294833 |
0.552 |
|
1992 |
Wang Y, Balaji R, Quirk RP, Mattice WL. Detection of the rate of exchange of chains between micelles formed by diblock copolymers in aqueous solution Polymer Bulletin. 28: 333-338. DOI: 10.1007/Bf00294831 |
0.523 |
|
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