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Tomasz J. Nowakowski - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
cortex development, radial glia, microRNAs
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79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Steyert M, Nowakowski T. Improving cellular diversity in human cerebellar organoids. Cell Stem Cell. 31: 3-4. PMID 38181748 DOI: 10.1016/j.stem.2023.12.007  0.815
2023 Velmeshev D, Perez Y, Yan Z, Valencia JE, Castaneda-Castellanos DR, Wang L, Schirmer L, Mayer S, Wick B, Wang S, Nowakowski TJ, Paredes M, Huang EJ, Kriegstein AR. Single-cell analysis of prenatal and postnatal human cortical development. Science (New York, N.Y.). 382: eadf0834. PMID 37824647 DOI: 10.1126/science.adf0834  0.828
2023 Kim CN, Shin D, Wang A, Nowakowski TJ. Spatiotemporal molecular dynamics of the developing human thalamus. Science (New York, N.Y.). 382: eadf9941. PMID 37824646 DOI: 10.1126/science.adf9941  0.761
2023 Kim CN, Shin D, Wang A, Nowakowski TJ. Spatiotemporal molecular dynamics of the developing human thalamus. Biorxiv : the Preprint Server For Biology. PMID 37662287 DOI: 10.1101/2023.08.21.554174  0.762
2023 Popova G, Retallack H, Kim CN, Wang A, Shin D, DeRisi JL, Nowakowski T. Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids. Elife. 12. PMID 37470786 DOI: 10.7554/eLife.87696  0.802
2023 Keough KC, Whalen S, Inoue F, Przytycki PF, Fair T, Deng C, Steyert M, Ryu H, Lindblad-Toh K, Karlsson E, Nowakowski T, Ahituv N, Pollen A, Pollard KS, Andrews G, et al. Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.). 380: eabm1696. PMID 37104607 DOI: 10.1126/science.abm1696  0.792
2023 Deng C, Whalen S, Steyert M, Ziffra R, Przytycki PF, Inoue F, Pereira DA, Capauto D, Norton S, Vaccarino FM, Pollen A, Nowakowski TJ, Ahituv N, Pollard KS. Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex. Biorxiv : the Preprint Server For Biology. PMID 36824845 DOI: 10.1101/2023.02.15.528663  0.821
2022 Steyert M, Nowakowski TJ. In preprints: new insights into truncated radial glia. Development (Cambridge, England). 149. PMID 36382646 DOI: 10.1242/dev.201374  0.747
2022 Wang T, Kim CN, Bakken TE, Gillentine MA, Henning B, Mao Y, Gilissen C, Nowakowski TJ, Eichler EE. Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders. Proceedings of the National Academy of Sciences of the United States of America. 119: e2203491119. PMID 36350923 DOI: 10.1073/pnas.2203491119  0.633
2022 Nowakowski TJ, Salama SR. Cerebral Organoids as an Experimental Platform for Human Neurogenomics. Cells. 11. PMID 36139380 DOI: 10.3390/cells11182803  0.371
2022 Andrews MG, Mukhtar T, Eze UC, Simoneau CR, Ross J, Parikshak N, Wang S, Zhou L, Koontz M, Velmeshev D, Siebert CV, Gemenes KM, Tabata T, Perez Y, Wang L, ... ... Nowakowski TJ, et al. Tropism of SARS-CoV-2 for human cortical astrocytes. Proceedings of the National Academy of Sciences of the United States of America. 119: e2122236119. PMID 35858406 DOI: 10.1073/pnas.2122236119  0.784
2022 Arlotta P, Chen F, Lodato S, Margrie TW, Nowakowski TJ, Pederson T, Rico B. Dissecting cellular diversity of cortical GABAergic cells across multiple modalities: A turning point in neuronal taxonomy. Faculty Reviews. 11: 13. PMID 35719130 DOI: 10.12703/r-01-000009  0.318
2022 Allen DE, Donohue KC, Cadwell CR, Shin D, Keefe MG, Sohal VS, Nowakowski TJ. Fate mapping of neural stem cell niches reveals distinct origins of human cortical astrocytes. Science (New York, N.Y.). eabm5224. PMID 35587512 DOI: 10.1126/science.abm5224  0.819
2022 Yu D, Li T, Delpech JC, Zhu B, Kishore P, Koshi T, Luo R, Pratt KJB, Popova G, Nowakowski TJ, Villeda SA, Piao X. Microglial GPR56 is the molecular target of maternal immune activation-induced parvalbumin-positive interneuron deficits. Science Advances. 8: eabm2545. PMID 35544642 DOI: 10.1126/sciadv.abm2545  0.776
2022 Schmitz MT, Sandoval K, Chen CP, Mostajo-Radji MA, Seeley WW, Nowakowski TJ, Ye CJ, Paredes MF, Pollen AA. The development and evolution of inhibitory neurons in primate cerebrum. Nature. 603: 871-877. PMID 35322231 DOI: 10.1038/s41586-022-04510-w  0.362
2022 Dorman LC, Nguyen PT, Escoubas CC, Vainchtein ID, Xiao Y, Lidsky PV, Nakajo H, Silva NJ, Lagares-Linares C, Wang EY, Taloma SE, Cuevas B, Nakao-Inoue H, Rivera BM, Schwer B, ... ... Nowakowski TJ, et al. A type I interferon response defines a conserved microglial state required for effective neuronal phagocytosis. Biorxiv : the Preprint Server For Biology. PMID 35233577 DOI: 10.1101/2021.04.29.441889  0.318
2022 Winkler EA, Wu D, Gil E, McCoy D, Narsinh K, Sun Z, Mueller K, Ross J, Kim H, Weinsheimer S, Berger M, Nowakowski T, Lim D, Abla A, Cooke D. Endoluminal Biopsy for Molecular Profiling of Human Brain Vascular Malformations. Neurology. PMID 35145012 DOI: 10.1212/WNL.0000000000200109  0.669
2022 Wu Z, Chhun BB, Popova G, Guo SM, Kim CN, Yeh LH, Nowakowski T, Zou J, Mehta SB. DynaMorph: self-supervised learning of morphodynamic states of live cells. Molecular Biology of the Cell. mbcE21110561. PMID 35138913 DOI: 10.1091/mbc.E21-11-0561  0.796
2022 Paredes MF, Mora C, Flores-Ramirez Q, Cebrian-Silla A, Del Dosso A, Larimer P, Chen J, Kang G, Gonzalez Granero S, Garcia E, Chu J, Delgado R, Cotter JA, Tang V, Spatazza J, ... ... Nowakowski TJ, et al. Nests of dividing neuroblasts sustain interneuron production for the developing human brain. Science (New York, N.Y.). 375: eabk2346. PMID 35084970 DOI: 10.1126/science.abk2346  0.821
2022 Winkler EA, Kim CN, Ross JM, Garcia JH, Gil E, Oh I, Chen LQ, Wu D, Catapano JS, Raygor K, Narsinh K, Kim H, Weinsheimer S, Cooke DL, Walcott BP, ... ... Nowakowski TJ, et al. A single-cell atlas of the normal and malformed human brain vasculature. Science (New York, N.Y.). eabi7377. PMID 35084939 DOI: 10.1126/science.abi7377  0.797
2021 Bandler RC, Vitali I, Delgado RN, Ho MC, Dvoretskova E, Ibarra Molinas JS, Frazel PW, Mohammadkhani M, Machold R, Maedler S, Liddelow SA, Nowakowski TJ, Fishell G, Mayer C. Single-cell delineation of lineage and genetic identity in the mouse brain. Nature. PMID 34912118 DOI: 10.1038/s41586-021-04237-0  0.797
2021 Delgado RN, Allen DE, Keefe MG, Mancia Leon WR, Ziffra RS, Crouch EE, Alvarez-Buylla A, Nowakowski TJ. Individual human cortical progenitors can produce excitatory and inhibitory neurons. Nature. PMID 34912114 DOI: 10.1038/s41586-021-04230-7  0.767
2021 Narsinh KH, Narsinh K, McCoy DB, Sun Z, Halabi C, Meisel K, Tihan T, Chaganti K, Amans MR, Halbach VV, Higashida RT, Hetts SW, Dowd CF, Winkler EA, Abla AA, ... Nowakowski TJ, et al. Endovascular Biopsy of Vertebrobasilar Aneurysm in Patient With Polyarteritis Nodosa. Frontiers in Neurology. 12: 697105. PMID 34887823 DOI: 10.3389/fneur.2021.697105  0.531
2021 Bhaduri A, Sandoval-Espinosa C, Otero-Garcia M, Oh I, Yin R, Eze UC, Nowakowski TJ, Kriegstein AR. An atlas of cortical arealization identifies dynamic molecular signatures. Nature. 598: 200-204. PMID 34616070 DOI: 10.1038/s41586-021-03910-8  0.624
2021 Ziffra RS, Kim CN, Ross JM, Wilfert A, Turner TN, Haeussler M, Casella AM, Przytycki PF, Keough KC, Shin D, Bogdanoff D, Kreimer A, Pollard KS, Ament SA, Eichler EE, ... ... Nowakowski TJ, et al. Single-cell epigenomics reveals mechanisms of human cortical development. Nature. 598: 205-213. PMID 34616060 DOI: 10.1038/s41586-021-03209-8  0.804
2021 Popova G, Soliman SS, Kim CN, Keefe MG, Hennick KM, Jain S, Li T, Tejera D, Shin D, Chhun BB, McGinnis CS, Speir M, Gartner ZJ, Mehta SB, Haeussler M, ... ... Nowakowski TJ, et al. Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids. Cell Stem Cell. PMID 34536354 DOI: 10.1016/j.stem.2021.08.015  0.819
2021 Ahanger SH, Delgado RN, Gil E, Cole MA, Zhao J, Hong SJ, Kriegstein AR, Nowakowski TJ, Pollen AA, Lim DA. Distinct nuclear compartment-associated genome architecture in the developing mammalian brain. Nature Neuroscience. PMID 34239128 DOI: 10.1038/s41593-021-00879-5  0.813
2021 Coll-Tané M, Gong NN, Belfer SJ, van Renssen LV, Kurtz-Nelson EC, Szuperak M, Eidhof I, van Reijmersdal B, Terwindt I, Durkin J, Verheij MMM, Kim CN, Hudac CM, Nowakowski TJ, Bernier RA, et al. The CHD8/CHD7/Kismet family links blood-brain barrier glia and serotonin to ASD-associated sleep defects. Science Advances. 7. PMID 34088660 DOI: 10.1126/sciadv.abe2626  0.588
2021 Willsey HR, Exner CRT, Xu Y, Everitt A, Sun N, Wang B, Dea J, Schmunk G, Zaltsman Y, Teerikorpi N, Kim A, Anderson AS, Shin D, Seyler M, Nowakowski TJ, et al. Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience. Neuron. 109: 1409. PMID 33887193 DOI: 10.1016/j.neuron.2021.03.030  0.522
2021 Gillentine MA, Wang T, Hoekzema K, Rosenfeld J, Liu P, Guo H, Kim CN, De Vries BBA, Vissers LELM, Nordenskjold M, Kvarnung M, Lindstrand A, Nordgren A, Gecz J, Iascone M, ... ... Nowakowski T, et al. Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders. Genome Medicine. 13: 63. PMID 33874999 DOI: 10.1186/s13073-021-00870-6  0.618
2021 Eze UC, Bhaduri A, Haeussler M, Nowakowski TJ, Kriegstein AR. Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia. Nature Neuroscience. PMID 33723434 DOI: 10.1038/s41593-020-00794-1  0.648
2021 Willsey HR, Exner CRT, Xu Y, Everitt A, Sun N, Wang B, Dea J, Schmunk G, Zaltsman Y, Teerikorpi N, Kim A, Anderson AS, Shin D, Seyler M, Nowakowski TJ, et al. Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience. Neuron. PMID 33497602 DOI: 10.1016/j.neuron.2021.01.002  0.61
2020 Ross JM, Kim C, Allen D, Crouch EE, Narsinh K, Cooke DL, Abla AA, Nowakowski TJ, Winkler EA. The Expanding Cell Diversity of the Brain Vasculature. Frontiers in Physiology. 11: 600767. PMID 33343397 DOI: 10.3389/fphys.2020.600767  0.753
2020 Bhaduri A, Andrews MG, Kriegstein AR, Nowakowski TJ. Are Organoids Ready for Prime Time? Cell Stem Cell. 27: 361-365. PMID 32888425 DOI: 10.1016/J.Stem.2020.08.013  0.669
2020 Guo SM, Yeh LH, Folkesson J, Ivanov IE, Krishnan AP, Keefe MG, Hashemi E, Shin D, Chhun BB, Cho NH, Leonetti MD, Han MH, Nowakowski T, Mehta SB. Revealing architectural order with quantitative label-free imaging and deep learning. Elife. 9. PMID 32716843 DOI: 10.7554/Elife.55502  0.575
2020 Markenscoff-Papadimitriou E, Whalen S, Przytycki P, Thomas R, Binyameen F, Nowakowski TJ, Kriegstein AR, Sanders SJ, State MW, Pollard KS, Rubenstein JL. A Chromatin Accessibility Atlas of the Developing Human Telencephalon. Cell. PMID 32610082 DOI: 10.1016/J.Cell.2020.06.002  0.63
2020 Selvadurai HJ, Luis E, Desai K, Lan X, Vladoiu MC, Whitley O, Galvin C, Vanner RJ, Lee L, Whetstone H, Kushida M, Nowakowski T, Diamandis P, Hawkins C, Bader G, et al. Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2 Granule Neuron Precursor. Cell Reports. 31: 107511. PMID 32294450 DOI: 10.1016/J.Celrep.2020.03.075  0.618
2020 Bhaduri A, Andrews MG, Mancia Leon W, Jung D, Shin D, Allen D, Jung D, Schmunk G, Haeussler M, Salma J, Pollen AA, Nowakowski TJ, Kriegstein AR. Cell stress in cortical organoids impairs molecular subtype specification. Nature. PMID 31996853 DOI: 10.1038/S41586-020-1962-0  0.824
2020 Keefe MG, Nowakowski TJ. Evolutionary Expansion of Human Cerebellar Germinal Zones. Trends in Neurosciences. PMID 31954525 DOI: 10.1016/J.Tins.2019.12.005  0.412
2020 Bhaduri A, Di Lullo E, Jung D, Müller S, Crouch EE, Espinosa CS, Ozawa T, Alvarado B, Spatazza J, Cadwell CR, Wilkins G, Velmeshev D, Liu SJ, Malatesta M, Andrews MG, ... ... Nowakowski TJ, et al. Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. Cell Stem Cell. 26: 48-63.e6. PMID 31901251 DOI: 10.1016/J.Stem.2019.11.015  0.801
2019 Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Communications Biology. 2: 155. PMID 31925016 DOI: 10.1038/s42003-019-0411-9  0.659
2019 Guo H, Bettella E, Marcogliese PC, Zhao R, Andrews JC, Nowakowski TJ, Gillentine MA, Hoekzema K, Wang T, Wu H, Jangam S, Liu C, Ni H, Willemsen MH, van Bon BW, et al. Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders. Nature Communications. 10: 4679. PMID 31616000 DOI: 10.1038/S41467-019-12435-8  0.357
2019 Cadwell CR, Bhaduri A, Mostajo-Radji MA, Keefe MG, Nowakowski TJ. Development and Arealization of the Cerebral Cortex. Neuron. 103: 980-1004. PMID 31557462 DOI: 10.1016/J.Neuron.2019.07.009  0.773
2019 Andrews MG, Nowakowski TJ. Human brain development through the lens of cerebral organoid models. Brain Research. 1725: 146470. PMID 31542572 DOI: 10.1016/J.Brainres.2019.146470  0.672
2019 Keefe MG, Nowakowski TJ. A recipe book for cell types in the human brain. Nature. 573: 36-37. PMID 31481767 DOI: 10.1038/D41586-019-02343-8  0.458
2019 Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Communications Biology. 2: 155. PMID 31069265 DOI: 10.1038/s42003-019-0411-9  0.659
2019 Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, ... ... Nowakowski TJ, et al. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. PMID 30770253 DOI: 10.1016/J.Neuron.2019.01.027  0.8
2019 Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, et al. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 176: 743-756.e17. PMID 30735633 DOI: 10.1016/J.Cell.2019.01.017  0.838
2019 Pai EL, Vogt D, Clemente-Perez A, McKinsey GL, Cho FS, Hu JS, Wimer M, Paul A, Fazel Darbandi S, Pla R, Nowakowski TJ, Goodrich LV, Paz JT, Rubenstein JLR. Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Reports. 26: 1157-1173.e5. PMID 30699346 DOI: 10.1016/J.Celrep.2019.01.031  0.331
2019 Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. Journal of Anatomy. PMID 30644551 DOI: 10.1111/Joa.12931  0.659
2018 Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. Nature Neuroscience. PMID 30455455 DOI: 10.1038/S41593-018-0265-3  0.743
2018 Bhaduri A, Nowakowski TJ. Single-cell sequencing paints diverse pictures of the brain. Nature. 563: 38-39. PMID 30382219 DOI: 10.1038/D41586-018-07027-3  0.455
2018 Nowakowski TJ. Building blocks of the human brain. Science (New York, N.Y.). 362: 169. PMID 30309940 DOI: 10.1126/Science.Aav1252  0.359
2018 Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. Bmc Biology. 16: 113. PMID 30309354 DOI: 10.1186/S12915-018-0580-X  0.772
2018 Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Transcriptional fates of human-specific segmental duplications in brain. Genome Research. PMID 30228200 DOI: 10.1101/Gr.237610.118  0.698
2018 Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, ... ... Nowakowski TJ, et al. The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders. Cell. 174: 505-520. PMID 30053424 DOI: 10.1016/J.Cell.2018.06.016  0.309
2018 Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, ... Nowakowski TJ, et al. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 173: 1356-1369.e22. PMID 29856954 DOI: 10.1016/J.Cell.2018.03.051  0.796
2018 Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, Layer RM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, ... ... Nowakowski TJ, et al. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nature Genetics. PMID 29700473 DOI: 10.1038/S41588-018-0107-Y  0.533
2018 Kosik KS, Nowakowski T. Evolution of New miRNAs and Cerebro-Cortical Development. Annual Review of Neuroscience. PMID 29618285 DOI: 10.1146/Annurev-Neuro-080317-061822  0.381
2017 Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, et al. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science (New York, N.Y.). 358: 1318-1323. PMID 29217575 DOI: 10.1126/Science.Aap8809  0.838
2017 Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR. Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. Cell Stem Cell. PMID 28111201 DOI: 10.1016/J.Stem.2016.12.007  0.8
2017 Gambardella G, Carissimo A, Chen A, Cutillo L, Nowakowski TJ, di Bernardo D, Blelloch R. The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells. Nature Communications. 8: 14126. PMID 28102192 DOI: 10.1038/Ncomms14126  0.388
2016 Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911847 DOI: 10.1073/pnas.1618029113  0.766
2016 Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Molecular Systems Biology. 12: 889. PMID 27888226 DOI: 10.15252/Msb.20166969  0.795
2016 Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR. Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron. 91: 1219-27. PMID 27657449 DOI: 10.1016/J.Neuron.2016.09.005  0.772
2016 Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS. A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA. Neuron. PMID 27263970 DOI: 10.1016/J.Neuron.2016.05.005  0.621
2016 Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 27153637 DOI: 10.1093/Bioinformatics/Btw201  0.777
2016 Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology. 17: 67. PMID 27081004 DOI: 10.1186/S13059-016-0932-1  0.804
2016 Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. Cell Stem Cell. PMID 27038591 DOI: 10.1016/J.Stem.2016.03.012  0.81
2015 Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Molecular Identity of Human Outer Radial Glia during Cortical Development. Cell. 163: 55-67. PMID 26406371 DOI: 10.1016/J.Cell.2015.09.004  0.827
2015 Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz CC, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 16: 439-47. PMID 25800779 DOI: 10.1016/J.Stem.2015.02.007  0.737
2014 Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC. Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. Nature. 515: 264-8. PMID 25391964 DOI: 10.1038/Nature13973  0.814
2014 Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nature Biotechnology. 32: 1053-8. PMID 25086649 DOI: 10.1038/Nbt.2967  0.812
2013 Nowakowski TJ, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ. Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis. Developmental Biology. 382: 530-7. PMID 24012747 DOI: 10.1016/J.Ydbio.2013.08.023  0.538
2013 Nowakowski TJ, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ. MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 110: 7056-61. PMID 23569256 DOI: 10.1073/Pnas.1219385110  0.513
2012 Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ. The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo. Bmc Neuroscience. 13: 20. PMID 22360971 DOI: 10.1186/1471-2202-13-20  0.487
2011 Nowakowski TJ, Mysiak KS, Pratt T, Price DJ. Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. Plos One. 6: e23013. PMID 21826226 DOI: 10.1371/Journal.Pone.0023013  0.553
2010 Quinn JC, Molinek M, Nowakowski TJ, Mason JO, Price DJ. Novel lines of Pax6-/- embryonic stem cells exhibit reduced neurogenic capacity without loss of viability. Bmc Neuroscience. 11: 26. PMID 20178645 DOI: 10.1186/1471-2202-11-26  0.552
2009 Nowakowski TJ, Pratt T, Price DJ. 01-P027 Investigating the roles of dicer1 endoribonuclease in embryonic organogenesis of mouse retina Mechanisms of Development. 126: S58-S59. DOI: 10.1016/J.Mod.2009.06.028  0.412
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