Richard Baker Jones - Publications

Affiliations: 
Ben May Department for Cancer Research and Institute for Genomics and Systems Biology University of Chicago, Chicago, IL 
Area:
Systems analysis of proteins, Protein-omics, Growth factor signaling networks, pharmacogenomics
Website:
http://phosphate.uchicago.edu

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Stark AL, Madian AG, Williams SW, Chen V, Wing C, Hause RJ, To LA, Gill AL, Myers JL, Gorsic LK, Ciaccio MF, White KP, Jones RB, Dolan ME. Identification of novel protein expression changes following cisplatin treatment and application to combination therapy. Journal of Proteome Research. PMID 28902521 DOI: 10.1021/acs.jproteome.7b00576  0.84
2017 Ciaccio MF, Jones RB. Microwestern Arrays for Systems-Level Analysis of SH2 Domain-Containing Proteins. Methods in Molecular Biology (Clifton, N.J.). 1555: 453-473. PMID 28092050 DOI: 10.1007/978-1-4939-6762-9_27  0.84
2015 Ciaccio MF, Chen VC, Jones RB, Bagheri N. The DIONESUS algorithm provides scalable and accurate reconstruction of dynamic phosphoproteomic networks to reveal new drug targets. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 776-91. PMID 26057728 DOI: 10.1039/c5ib00065c  0.68
2014 Hause RJ, Stark AL, Antao NN, Gorsic LK, Chung SH, Brown CD, Wong SS, Gill DF, Myers JL, To LA, White KP, Dolan ME, Jones RB. Identification and validation of genetic variants that influence transcription factor and cell signaling protein levels. American Journal of Human Genetics. 95: 194-208. PMID 25087611 DOI: 10.1016/j.ajhg.2014.07.005  0.68
2014 Leung KK, Hause RJ, Barkinge JL, Ciaccio MF, Chuu CP, Jones RB. Enhanced prediction of Src homology 2 (SH2) domain binding potentials using a fluorescence polarization-derived c-Met, c-Kit, ErbB, and androgen receptor interactome. Molecular & Cellular Proteomics : McP. 13: 1705-23. PMID 24728074 DOI: 10.1074/mcp.M113.034876  0.68
2014 Stark AL, Hause RJ, Gorsic LK, Antao NN, Wong SS, Chung SH, Gill DF, Im HK, Myers JL, White KP, Jones RB, Dolan ME. Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy. Plos Genetics. 10: e1004192. PMID 24699359 DOI: 10.1371/journal.pgen.1004192  0.68
2014 Little TJ, McKie S, Jones RB, D'Amato M, Smith C, Kiss O, Thompson DG, McLaughlin JT. Mapping glucose-mediated gut-to-brain signalling pathways in humans. Neuroimage. 96: 1-11. PMID 24685436 DOI: 10.1016/j.neuroimage.2014.03.059  0.68
2013 Jones RB, Ashurst EJ. Online anonymous discussion between service users and health professionals to ascertain stakeholder concerns in using e-health services in mental health. Health Informatics Journal. 19: 281-99. PMID 24255052 DOI: 10.1177/1460458212474908  0.01
2013 Lin CY, Huo C, Kuo LK, Hiipakka RA, Jones RB, Lin HP, Hung Y, Su LC, Tseng JC, Kuo YY, Wang YL, Fukui Y, Kao YH, Kokontis JM, Yeh CC, et al. Cholestane-3β, 5α, 6β-triol suppresses proliferation, migration, and invasion of human prostate cancer cells. Plos One. 8: e65734. PMID 23785446 DOI: 10.1371/journal.pone.0065734  0.68
2013 Jones RB. Do low-affinity ErbB receptor protein interactions represent the base of a cell signaling iceberg? Expert Review of Proteomics. 10: 115-8. PMID 23573776 DOI: 10.1586/epr.12.78  0.68
2012 Hause RJ, Leung KK, Barkinge JL, Ciaccio MF, Chuu CP, Jones RB. Comprehensive binary interaction mapping of SH2 domains via fluorescence polarization reveals novel functional diversification of ErbB receptors. Plos One. 7: e44471. PMID 22973453 DOI: 10.1371/journal.pone.0044471  0.68
2012 Madian AG, Wheeler HE, Jones RB, Dolan ME. Relating human genetic variation to variation in drug responses. Trends in Genetics : Tig. 28: 487-95. PMID 22840197 DOI: 10.1016/j.tig.2012.06.008  0.68
2012 Jones RB, Dockray GJ, Thompson DG. The effects of fasting duration on gastric emptying in man, an exploration of the role of the endocannabinoid system and inter-individual responsiveness. Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. 24: 928-e461. PMID 22726634 DOI: 10.1111/j.1365-2982.2012.01954.x  0.68
2012 Chuu CP, Lin HP, Ciaccio MF, Kokontis JM, Hause RJ, Hiipakka RA, Liao S, Jones RB. Caffeic acid phenethyl ester suppresses the proliferation of human prostate cancer cells through inhibition of p70S6K and Akt signaling networks. Cancer Prevention Research (Philadelphia, Pa.). 5: 788-97. PMID 22562408 DOI: 10.1158/1940-6207.CAPR-12-0004-T  0.68
2012 Jones RB, McKie S, Astbury N, Little TJ, Tivey S, Lassman DJ, McLaughlin J, Luckman S, Williams SR, Dockray GJ, Thompson DG. Functional neuroimaging demonstrates that ghrelin inhibits the central nervous system response to ingested lipid. Gut. 61: 1543-51. PMID 22315469 DOI: 10.1136/gutjnl-2011-301323  0.68
2011 Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, Ciaccio MF, Gat-Viks I, Tonti E, DeGrace MM, Clauser KR, Garber M, Eisenhaure TM, Yosef N, Robinson J, Sutton A, ... ... Jones RB, et al. Systematic discovery of TLR signaling components delineates viral-sensing circuits. Cell. 147: 853-67. PMID 22078882 DOI: 10.1016/j.cell.2011.10.022  0.68
2011 Hause RJ, Kim HD, Leung KK, Jones RB. Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches. Expert Review of Proteomics. 8: 565-75. PMID 21999828 DOI: 10.1586/epr.11.49  0.68
2011 Liu J, Kuo WL, Seiwert TY, Lingen M, Ciaccio MF, Jones RB, Rosner MR, Cohen EE. Effect of complementary pathway blockade on efficacy of combination enzastaurin and rapamycin. Head & Neck. 33: 1774-82. PMID 21438065 DOI: 10.1002/hed.21701  0.68
2010 Liu BA, Jablonowski K, Shah EE, Engelmann BW, Jones RB, Nash PD. SH2 domains recognize contextual peptide sequence information to determine selectivity. Molecular & Cellular Proteomics : McP. 9: 2391-404. PMID 20627867 DOI: 10.1074/mcp.M110.001586  0.68
2010 Wojcik J, Hantschel O, Grebien F, Kaupe I, Bennett KL, Barkinge J, Jones RB, Koide A, Superti-Furga G, Koide S. A potent and highly specific FN3 monobody inhibitor of the Abl SH2 domain. Nature Structural & Molecular Biology. 17: 519-27. PMID 20357770 DOI: 10.1038/nsmb.1793  0.68
2010 Ciaccio MF, Wagner JP, Chuu CP, Lauffenburger DA, Jones RB. Systems analysis of EGF receptor signaling dynamics with microwestern arrays. Nature Methods. 7: 148-55. PMID 20101245 DOI: 10.1038/nmeth.1418  0.68
2009 Netzer N, Goodenbour JM, David A, Dittmar KA, Jones RB, Schneider JR, Boone D, Eves EM, Rosner MR, Gibbs JS, Embry A, Dolan B, Das S, Hickman HD, Berglund P, et al. Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature. 462: 522-6. PMID 19940929 DOI: 10.1038/nature08576  0.68
2008 Chuu CP, Chen RY, Barkinge JL, Ciaccio MF, Jones RB. Systems-level analysis of ErbB4 signaling in breast cancer: a laboratory to clinical perspective. Molecular Cancer Research : McR. 6: 885-91. PMID 18567793 DOI: 10.1158/1541-7786.MCR-07-0369  0.68
2006 Newman EA, Muh SJ, Hovhannisyan RH, Warzecha CC, Jones RB, McKeehan WL, Carstens RP. Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays. Rna (New York, N.Y.). 12: 1129-41. PMID 16603716 DOI: 10.1261/rna.34906  0.68
2006 Jones RB, Gordus A, Krall JA, MacBeath G. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature. 439: 168-74. PMID 16273093 DOI: 10.1038/nature04177  0.68
2004 Luo Y, Cho HH, Jones RB, Jin C, McKeehan WL. Improved production of recombinant fibroblast growth factor 7 (FGF7/KGF) from bacteria in high magnesium chloride. Protein Expression and Purification. 33: 326-31. PMID 14711521 DOI: 10.1016/j.pep.2003.10.013  0.68
2002 Bates SH, Gardiner JV, Jones RB, Bloom SR, Bailey CJ. Acute stimulation of glucose uptake by leptin in L6 muscle cells Hormone and Metabolic Research. 34: 111-115. PMID 11972298  0.68
2001 Ye S, Luo Y, Lu W, Jones RB, Linhardt RJ, Capila I, Toida T, Kan M, Pelletier H, McKeehan WL. Structural basis for interaction of FGF-1, FGF-2, and FGF-7 with different heparan sulfate motifs. Biochemistry. 40: 14429-39. PMID 11724555 DOI: 10.1021/bi011000u  0.68
2001 Jones RB, Carstens RP, Luo Y, McKeehan WL. 5'- and 3'-terminal nucleotides in the FGFR2 ISAR splicing element core have overlapping roles in exon IIIb activation and exon IIIc repression. Nucleic Acids Research. 29: 3557-65. PMID 11522825  0.68
2001 Bailey CJ, Turner SL, Bates SH, Jones RB. Sibutramine metabolites increase glucose transport by cultured rat muscle cells. International Journal of Obesity and Related Metabolic Disorders : Journal of the International Association For the Study of Obesity. 25: 478-85. PMID 11319650 DOI: 10.1038/sj.ijo.0801575  0.68
2001 Jones RB, Wang F, Luo Y, Yu C, Jin C, Suzuki T, Kan M, McKeehan WL. The nonsense-mediated decay pathway and mutually exclusive expression of alternatively spliced FGFR2IIIb and -IIIc mRNAs. The Journal of Biological Chemistry. 276: 4158-67. PMID 11042206 DOI: 10.1074/jbc.M006151200  0.68
2000 Yu C, Wang F, Kan M, Jin C, Jones RB, Weinstein M, Deng CX, McKeehan WL. Elevated cholesterol metabolism and bile acid synthesis in mice lacking membrane tyrosine kinase receptor FGFR4. The Journal of Biological Chemistry. 275: 15482-9. PMID 10809780 DOI: 10.1074/jbc.275.20.15482  0.68
1998 Luo Y, Lu W, Mohamedali KA, Jang JH, Jones RB, Gabriel JL, Kan M, McKeehan WL. The glycine box: a determinant of specificity for fibroblast growth factor. Biochemistry. 37: 16506-15. PMID 9843417 DOI: 10.1021/bi9816599  0.68
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