Brenda Andrews - Publications

Affiliations: 
University of Toronto, Toronto, ON, Canada 
Area:
Yeast genomics
Website:
http://sites.utoronto.ca/andrewslab/homepage.html

113 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Mair B, Moffat J, Boone C, Andrews BJ. Genetic interaction networks in cancer cells. Current Opinion in Genetics & Development. 54: 64-72. PMID 30974317 DOI: 10.1016/j.gde.2019.03.002  0.8
2019 Costanzo M, Kuzmin E, van Leeuwen J, Mair B, Moffat J, Boone C, Andrews B. Global Genetic Networks and the Genotype-to-Phenotype Relationship. Cell. 177: 85-100. PMID 30901552 DOI: 10.1016/j.cell.2019.01.033  0.8
2017 Hart T, Tong AHY, Chan K, Van Leeuwen J, Seetharaman A, Aregger M, Chandrashekhar M, Hustedt N, Seth S, Noonan A, Habsid A, Sizova O, Nedyalkova L, Climie R, Tworzyanski L, ... ... Andrews BJ, et al. Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens. G3 (Bethesda, Md.). PMID 28655737 DOI: 10.1534/g3.117.041277  0.8
2017 Youn JY, Friesen H, Nguyen Ba AN, Liang W, Messier V, Cox MJ, Moses AM, Andrews B. Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. G3 (Bethesda, Md.). PMID 28122947 DOI: 10.1534/g3.116.038471  0.48
2016 van Leeuwen J, Pons C, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Ušaj MM, Pechlaner M, Takar M, Ušaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, ... ... Andrews BJ, et al. Exploring genetic suppression interactions on a global scale. Science (New York, N.Y.). 354. PMID 27811238 DOI: 10.1126/science.aag0839  0.48
2016 Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, ... ... Andrews B, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/science.aaf1420  1
2016 Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Andrews BJ, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/j.cels.2016.08.008  1
2016 Mattiazzi Usaj M, Styles EB, Verster AJ, Friesen H, Boone C, Andrews BJ. High-Content Screening for Quantitative Cell Biology. Trends in Cell Biology. PMID 27118708 DOI: 10.1016/j.tcb.2016.03.008  1
2016 Styles EB, Friesen H, Boone C, Andrews BJ. High-Throughput Microscopy-Based Screening in Saccharomyces cerevisiae. Cold Spring Harbor Protocols. 2016: pdb.top087593. PMID 27037080 DOI: 10.1101/pdb.top087593  0.48
2016 Cox MJ, Chong YT, Boone C, Andrews B. Liquid Growth of Arrayed Fluorescently Tagged Saccharomyces cerevisiae Strains for Live-Cell High-Throughput Microscopy Screens. Cold Spring Harbor Protocols. 2016: pdb.prot088799. PMID 27037071 DOI: 10.1101/pdb.prot088799  1
2015 Boone C, Andrews BJ. HUMAN GENOME. The indispensable genome. Science (New York, N.Y.). 350: 1028-9. PMID 26612934 DOI: 10.1126/science.aad7925  1
2015 van Leeuwen J, Andrews B, Boone C, Tan G. Construction of Multifragment Plasmids by Homologous Recombination in Yeast. Cold Spring Harbor Protocols. 2015: pdb.top084111. PMID 26330631 DOI: 10.1101/pdb.top084111  1
2015 Koh JL, Chong YT, Friesen H, Moses A, Boone C, Andrews BJ, Moffat J. CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae. G3 (Bethesda, Md.). 5: 1223-32. PMID 26048563 DOI: 10.1534/g3.115.017830  1
2015 Chong YT, Koh JL, Friesen H, Duffy K, Cox MJ, Moses A, Moffat J, Boone C, Andrews BJ. Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis. Cell. 161: 1413-24. PMID 26046442 DOI: 10.1016/j.cell.2015.04.051  1
2014 Kurat CF, Lambert JP, Petschnigg J, Friesen H, Pawson T, Rosebrock A, Gingras AC, Fillingham J, Andrews B. Cell cycle-regulated oscillator coordinates core histone gene transcription through histone acetylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 14124-9. PMID 25228766 DOI: 10.1073/pnas.1414024111  1
2014 Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C. Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods in Molecular Biology (Clifton, N.J.). 1205: 143-68. PMID 25213244 DOI: 10.1007/978-1-4939-1363-3_10  1
2014 Parts L, Liu YC, Tekkedil MM, Steinmetz LM, Caudy AA, Fraser AG, Boone C, Andrews BJ, Rosebrock AP. Heritability and genetic basis of protein level variation in an outbred population. Genome Research. 24: 1363-70. PMID 24823668 DOI: 10.1101/gr.170506.113  1
2014 Rossi D, Galvão FC, Bellato HM, Boldrin PE, Andrews BJ, Valentini SR, Zanelli CF. eIF5A has a function in the cotranslational translocation of proteins into the ER. Amino Acids. 46: 645-53. PMID 24306454 DOI: 10.1007/s00726-013-1618-6  1
2014 Kurat CF, Recht J, Radovani E, Durbic T, Andrews B, Fillingham J. Regulation of histone gene transcription in yeast. Cellular and Molecular Life Sciences : Cmls. 71: 599-613. PMID 23974242 DOI: 10.1007/s00018-013-1443-9  1
2013 Vizeacoumar FJ, Arnold R, Vizeacoumar FS, Chandrashekhar M, Buzina A, Young JT, Kwan JH, Sayad A, Mero P, Lawo S, Tanaka H, Brown KR, Baryshnikova A, Mak AB, Fedyshyn Y, ... ... Andrews B, et al. A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. Molecular Systems Biology. 9: 696. PMID 24104479 DOI: 10.1038/msb.2013.54  1
2013 Styles E, Youn JY, Mattiazzi Usaj M, Andrews B. Functional genomics in the study of yeast cell polarity: moving in the right direction. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130118. PMID 24062589 DOI: 10.1098/rstb.2013.0118  1
2013 Baryshnikova A, VanderSluis B, Costanzo M, Myers CL, Cha RS, Andrews B, Boone C. Global linkage map connects meiotic centromere function to chromosome size in budding yeast. G3 (Bethesda, Md.). 3: 1741-51. PMID 23979930 DOI: 10.1534/g3.113.007377  1
2013 Neumüller RA, Gross T, Samsonova AA, Vinayagam A, Buckner M, Founk K, Hu Y, Sharifpoor S, Rosebrock AP, Andrews B, Winston F, Perrimon N. Conserved regulators of nucleolar size revealed by global phenotypic analyses. Science Signaling. 6: ra70. PMID 23962978 DOI: 10.1126/scisignal.2004145  1
2013 Andrews BJ, DePellegrin T. HeLa sequencing and genomic privacy: the next chapter. G3 (Bethesda, Md.). 3: vii. PMID 23926224 DOI: 10.1534/g3.113.007427  1
2013 Baryshnikova A, Costanzo M, Myers CL, Andrews B, Boone C. Genetic interaction networks: toward an understanding of heritability. Annual Review of Genomics and Human Genetics. 14: 111-33. PMID 23808365 DOI: 10.1146/annurev-genom-082509-141730  1
2013 Handfield LF, Chong YT, Simmons J, Andrews BJ, Moses AM. Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins. Plos Computational Biology. 9: e1003085. PMID 23785265 DOI: 10.1371/journal.pcbi.1003085  1
2013 Wagih O, Usaj M, Baryshnikova A, VanderSluis B, Kuzmin E, Costanzo M, Myers CL, Andrews BJ, Boone CM, Parts L. SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research. 41: W591-6. PMID 23677617 DOI: 10.1093/nar/gkt400  1
2013 Bastajian N, Friesen H, Andrews BJ. Bck2 acts through the MADS box protein Mcm1 to activate cell-cycle-regulated genes in budding yeast. Plos Genetics. 9: e1003507. PMID 23675312 DOI: 10.1371/journal.pgen.1003507  1
2013 Srikumar T, Lewicki MC, Costanzo M, Tkach JM, van Bakel H, Tsui K, Johnson ES, Brown GW, Andrews BJ, Boone C, Giaever G, Nislow C, Raught B. Global analysis of SUMO chain function reveals multiple roles in chromatin regulation. The Journal of Cell Biology. 201: 145-63. PMID 23547032 DOI: 10.1083/jcb.201210019  1
2012 Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ. Functional analysis with a barcoder yeast gene overexpression system. G3 (Bethesda, Md.). 2: 1279-89. PMID 23050238 DOI: 10.1534/g3.112.003400  1
2012 Ryan O, Shapiro RS, Kurat CF, Mayhew D, Baryshnikova A, Chin B, Lin ZY, Cox MJ, Vizeacoumar F, Cheung D, Bahr S, Tsui K, Tebbji F, Sellam A, Istel F, ... ... Andrews B, et al. Global gene deletion analysis exploring yeast filamentous growth. Science (New York, N.Y.). 337: 1353-6. PMID 22984072 DOI: 10.1126/science.1224339  1
2012 Koch EN, Costanzo M, Bellay J, Deshpande R, Chatfield-Reed K, Chua G, D'Urso G, Andrews BJ, Boone C, Myers CL. Conserved rules govern genetic interaction degree across species. Genome Biology. 13: R57. PMID 22747640 DOI: 10.1186/gb-2012-13-7-r57  1
2012 Witkin KL, Chong Y, Shao S, Webster MT, Lahiri S, Walters AD, Lee B, Koh JL, Prinz WA, Andrews BJ, Cohen-Fix O. The budding yeast nuclear envelope adjacent to the nucleolus serves as a membrane sink during mitotic delay. Current Biology : Cb. 22: 1128-33. PMID 22658600 DOI: 10.1016/j.cub.2012.04.022  1
2012 Kaluarachchi Duffy S, Friesen H, Baryshnikova A, Lambert JP, Chong YT, Figeys D, Andrews B. Exploring the yeast acetylome using functional genomics. Cell. 149: 936-48. PMID 22579291 DOI: 10.1016/j.cell.2012.02.064  1
2012 Nguyen Ba AN, Yeh BJ, van Dyk D, Davidson AR, Andrews BJ, Weiss EL, Moses AM. Proteome-wide discovery of evolutionary conserved sequences in disordered regions. Science Signaling. 5: rs1. PMID 22416277 DOI: 10.1126/scisignal.2002515  1
2012 Sharifpoor S, van Dyk D, Costanzo M, Baryshnikova A, Friesen H, Douglas AC, Youn JY, VanderSluis B, Myers CL, Papp B, Boone C, Andrews BJ. Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Research. 22: 791-801. PMID 22282571 DOI: 10.1101/gr.129213.111  1
2012 Chong YT, Cox MJ, Andrews B. Proteome-wide screens in Saccharomyces cerevisiae using the yeast GFP collection. Advances in Experimental Medicine and Biology. 736: 169-78. PMID 22161327 DOI: 10.1007/978-1-4419-7210-1_8  1
2012 Jin K, Li J, Vizeacoumar FS, Li Z, Min R, Zamparo L, Vizeacoumar FJ, Datti A, Andrews B, Boone C, Zhang Z. PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae. Nucleic Acids Research. 40: D687-94. PMID 22009677 DOI: 10.1093/nar/gkr827  1
2011 Kurat CF, Lambert JP, van Dyk D, Tsui K, van Bakel H, Kaluarachchi S, Friesen H, Kainth P, Nislow C, Figeys D, Fillingham J, Andrews BJ. Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes & Development. 25: 2489-501. PMID 22156209 DOI: 10.1101/gad.173427.111  1
2011 Cokol M, Chua HN, Tasan M, Mutlu B, Weinstein ZB, Suzuki Y, Nergiz ME, Costanzo M, Baryshnikova A, Giaever G, Nislow C, Myers CL, Andrews BJ, Boone C, Roth FP. Systematic exploration of synergistic drug pairs. Molecular Systems Biology. 7: 544. PMID 22068327 DOI: 10.1038/msb.2011.71  1
2011 Liu C, van Dyk D, Choe V, Yan J, Majumder S, Costanzo M, Bao X, Boone C, Huo K, Winey M, Fisk H, Andrews B, Rao H. Ubiquitin ligase Ufd2 is required for efficient degradation of Mps1 kinase. The Journal of Biological Chemistry. 286: 43660-7. PMID 22045814 DOI: 10.1074/jbc.M111.286229  1
2011 Boettner DR, Friesen H, Andrews B, Lemmon SK. Clathrin light chain directs endocytosis by influencing the binding of the yeast Hip1R homologue, Sla2, to F-actin. Molecular Biology of the Cell. 22: 3699-714. PMID 21849475 DOI: 10.1091/mbc.E11-07-0628  0.48
2011 Echtenkamp FJ, Zelin E, Oxelmark E, Woo JI, Andrews BJ, Garabedian M, Freeman BC. Global functional map of the p23 molecular chaperone reveals an extensive cellular network. Molecular Cell. 43: 229-41. PMID 21777812 DOI: 10.1016/j.molcel.2011.05.029  1
2011 Bellay J, Atluri G, Sing TL, Toufighi K, Costanzo M, Ribeiro PS, Pandey G, Baller J, VanderSluis B, Michaut M, Han S, Kim P, Brown GW, Andrews BJ, Boone C, et al. Putting genetic interactions in context through a global modular decomposition. Genome Research. 21: 1375-87. PMID 21715556 DOI: 10.1101/gr.117176.110  1
2011 Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, Baryshnikova A, Gelius-Dietrich G, Lercher MJ, Jelasity M, Myers CL, Andrews BJ, Boone C, Oliver SG, Pál C, Papp B. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genetics. 43: 656-62. PMID 21623372 DOI: 10.1038/ng.846  1
2011 Magtanong L, Ho CH, Barker SL, Jiao W, Baryshnikova A, Bahr S, Smith AM, Heisler LE, Choy JS, Kuzmin E, Andrusiak K, Kobylianski A, Li Z, Costanzo M, Basrai MA, ... ... Andrews B, et al. Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nature Biotechnology. 29: 505-11. PMID 21572441 DOI: 10.1038/nbt.1855  1
2011 Sharifpoor S, Nguyen Ba AN, Youn JY, Young JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ. A quantitative literature-curated gold standard for kinase-substrate pairs. Genome Biology. 12: R39. PMID 21492431 DOI: 10.1186/gb-2011-12-4-r39  1
2011 Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, ... ... Andrews B, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/nbt.1832  1
2011 Michaut M, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C, Bader GD. Protein complexes are central in the yeast genetic landscape. Plos Computational Biology. 7: e1001092. PMID 21390331 DOI: 10.1371/journal.pcbi.1001092  1
2011 Bellay J, Han S, Michaut M, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM. Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biology. 12: R14. PMID 21324131 DOI: 10.1186/gb-2011-12-2-r14  1
2011 Costanzo M, Baryshnikova A, Myers CL, Andrews B, Boone C. Charting the genetic interaction map of a cell. Current Opinion in Biotechnology. 22: 66-74. PMID 21111604 DOI: 10.1016/j.copbio.2010.11.001  1
2010 Kainth P, Andrews B. Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics. Transcription. 1: 76-80. PMID 21326895 DOI: 10.4161/trns.1.2.12328  0.44
2010 VanderSluis B, Bellay J, Musso G, Costanzo M, Papp B, Vizeacoumar FJ, Baryshnikova A, Andrews B, Boone C, Myers CL. Genetic interactions reveal the evolutionary trajectories of duplicate genes. Molecular Systems Biology. 6: 429. PMID 21081923 DOI: 10.1038/msb.2010.82  1
2010 Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, ... ... Andrews B, et al. Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nature Methods. 7: 1017-24. PMID 21076421 DOI: 10.1038/nmeth.1534  1
2010 Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C. Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Methods in Enzymology. 470: 145-79. PMID 20946810 DOI: 10.1016/S0076-6879(10)70007-0  1
2010 Kahana S, Pnueli L, Kainth P, Sassi HE, Andrews B, Kassir Y. Functional dissection of IME1 transcription using quantitative promoter-reporter screening. Genetics. 186: 829-41. PMID 20739709 DOI: 10.1534/genetics.110.122200  0.44
2010 Youn JY, Friesen H, Kishimoto T, Henne WM, Kurat CF, Ye W, Ceccarelli DF, Sicheri F, Kohlwein SD, McMahon HT, Andrews BJ. Dissecting BAR domain function in the yeast Amphiphysins Rvs161 and Rvs167 during endocytosis. Molecular Biology of the Cell. 21: 3054-69. PMID 20610658 DOI: 10.1091/mbc.E10-03-0181  1
2010 Liu C, van Dyk D, Xu P, Choe V, Pan H, Peng J, Andrews B, Rao H. Ubiquitin chain elongation enzyme Ufd2 regulates a subset of Doa10 substrates. The Journal of Biological Chemistry. 285: 10265-72. PMID 20159987 DOI: 10.1074/jbc.M110.110551  1
2010 Mok J, Kim PM, Lam HY, Piccirillo S, Zhou X, Jeschke GR, Sheridan DL, Parker SA, Desai V, Jwa M, Cameroni E, Niu H, Good M, Remenyi A, Ma JL, ... ... Andrews BJ, et al. Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs. Science Signaling. 3: ra12. PMID 20159853 DOI: 10.1126/scisignal.2000482  1
2010 Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, ... ... Andrews BJ, et al. The genetic landscape of a cell. Science (New York, N.Y.). 327: 425-31. PMID 20093466 DOI: 10.1126/science.1180823  1
2010 Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, ... Andrews BJ, et al. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. The Journal of Cell Biology. 188: 69-81. PMID 20065090 DOI: 10.1083/jcb.200909013  1
2010 Kainth P, Andrews B. Quantitative cell array screening to identify regulators of gene expression. Briefings in Functional Genomics. 9: 13-23. PMID 19952074 DOI: 10.1093/bfgp/elp047  0.44
2010 Traven A, Lo TL, Pike BL, Friesen H, Guzzo J, Andrews B, Heierhorst J. Dual functions of Mdt1 in genome maintenance and cell integrity pathways in Saccharomyces cerevisiae. Yeast (Chichester, England). 27: 41-52. PMID 19894211 DOI: 10.1002/yea.1730  1
2010 Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Research. 38: D502-7. PMID 19880385 DOI: 10.1093/nar/gkp820  1
2009 Liu C, van Dyk D, Li Y, Andrews B, Rao H. A genome-wide synthetic dosage lethality screen reveals multiple pathways that require the functioning of ubiquitin-binding proteins Rad23 and Dsk2. Bmc Biology. 7: 75. PMID 19909498 DOI: 10.1186/1741-7007-7-75  1
2009 Huang D, Kaluarachchi S, van Dyk D, Friesen H, Sopko R, Ye W, Bastajian N, Moffat J, Sassi H, Costanzo M, Andrews BJ. Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast. Plos Biology. 7: e1000188. PMID 19823668 DOI: 10.1371/journal.pbio.1000188  1
2009 Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Peña-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, Andrews BJ. Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Molecular Cell. 35: 340-51. PMID 19683497 DOI: 10.1016/j.molcel.2009.06.023  1
2009 Dhillon N, Raab J, Guzzo J, Szyjka SJ, Gangadharan S, Aparicio OM, Andrews B, Kamakaka RT. DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator. The Embo Journal. 28: 2583-600. PMID 19629037 DOI: 10.1038/emboj.2009.198  1
2009 Sassi HE, Bastajian N, Kainth P, Andrews BJ. Reporter-based synthetic genetic array analysis: a functional genomics approach for investigating the cell cycle in Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 548: 55-73. PMID 19521819 DOI: 10.1007/978-1-59745-540-4_4  0.48
2009 Roth FP, Lipshitz HD, Andrews BJ. Q&A: epistasis. Journal of Biology. 8: 35. PMID 19486505 DOI: 10.1186/jbiol144  1
2009 Zou J, Friesen H, Larson J, Huang D, Cox M, Tatchell K, Andrews B. Regulation of cell polarity through phosphorylation of Bni4 by Pho85 G1 cyclin-dependent kinases in Saccharomyces cerevisiae. Molecular Biology of the Cell. 20: 3239-50. PMID 19458192 DOI: 10.1091/mbc.E08-12-1255  0.48
2009 Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JL, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, et al. A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nature Biotechnology. 27: 369-77. PMID 19349972 DOI: 10.1038/nbt.1534  1
2009 Kainth P, Sassi HE, Peña-Castillo L, Chua G, Hughes TR, Andrews B. Comprehensive genetic analysis of transcription factor pathways using a dual reporter gene system in budding yeast. Methods (San Diego, Calif.). 48: 258-64. PMID 19269327 DOI: 10.1016/j.ymeth.2009.02.015  1
2009 Makhnevych T, Sydorskyy Y, Xin X, Srikumar T, Vizeacoumar FJ, Jeram SM, Li Z, Bahr S, Andrews BJ, Boone C, Raught B. Global map of SUMO function revealed by protein-protein interaction and genetic networks. Molecular Cell. 33: 124-35. PMID 19150434 DOI: 10.1016/j.molcel.2008.12.025  1
2008 Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, ... ... Andrews BJ, et al. eSGA: E. coli synthetic genetic array analysis. Nature Methods. 5: 789-95. PMID 18677321 DOI: 10.1038/nmeth.1239  1
2008 Yan Z, Costanzo M, Heisler LE, Paw J, Kaper F, Andrews BJ, Boone C, Giaever G, Nislow C. Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers. Nature Methods. 5: 719-25. PMID 18622398 DOI: 10.1038/nmeth.1231  1
2008 Hoke SM, Guzzo J, Andrews B, Brandl CJ. Systematic genetic array analysis links the Saccharomyces cerevisiae SAGA/SLIK and NuA4 component Tra1 to multiple cellular processes. Bmc Genetics. 9: 46. PMID 18616809 DOI: 10.1186/1471-2156-9-46  1
2007 Sopko R, Huang D, Smith JC, Figeys D, Andrews BJ. Activation of the Cdc42p GTPase by cyclin-dependent protein kinases in budding yeast. The Embo Journal. 26: 4487-500. PMID 17853895 DOI: 10.1038/sj.emboj.7601847  1
2007 Huang D, Friesen H, Andrews B. Pho85, a multifunctional cyclin-dependent protein kinase in budding yeast. Molecular Microbiology. 66: 303-14. PMID 17850263 DOI: 10.1111/j.1365-2958.2007.05914.x  0.48
2007 Mutiu AI, Hoke SM, Genereaux J, Hannam C, MacKenzie K, Jobin-Robitaille O, Guzzo J, Côté J, Andrews B, Haniford DB, Brandl CJ. Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. Genetics. 177: 151-66. PMID 17660562 DOI: 10.1534/genetics.107.074476  1
2007 Boone C, Bussey H, Andrews BJ. Exploring genetic interactions and networks with yeast. Nature Reviews. Genetics. 8: 437-49. PMID 17510664 DOI: 10.1038/nrg2085  1
2007 Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, ... Andrews B, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/nature05649  1
2006 Parsons AB, Lopez A, Givoni IE, Williams DE, Gray CA, Porter J, Chua G, Sopko R, Brost RL, Ho CH, Wang J, Ketela T, Brenner C, Brill JA, Fernandez GE, ... ... Andrews B, et al. Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell. 126: 611-25. PMID 16901791 DOI: 10.1016/j.cell.2006.06.040  1
2006 Chua G, Morris QD, Sopko R, Robinson MD, Ryan O, Chan ET, Frey BJ, Andrews BJ, Boone C, Hughes TR. Identifying transcription factor functions and targets by phenotypic activation. Proceedings of the National Academy of Sciences of the United States of America. 103: 12045-50. PMID 16880382 DOI: 10.1073/pnas.0605140103  1
2006 Bussey H, Andrews B, Boone C. From worm genetic networks to complex human diseases. Nature Genetics. 38: 862-3. PMID 16874324 DOI: 10.1038/ng0806-862  1
2006 Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. Journal of Biology. 5: 11. PMID 16762047 DOI: 10.1186/jbiol36  1
2006 Baetz K, Measday V, Andrews B. Revealing hidden relationships among yeast genes involved in chromosome segregation using systematic synthetic lethal and synthetic dosage lethal screens. Cell Cycle (Georgetown, Tex.). 5: 592-5. PMID 16582600  1
2006 Sopko R, Huang D, Preston N, Chua G, Papp B, Kafadar K, Snyder M, Oliver SG, Cyert M, Hughes TR, Boone C, Andrews B. Mapping pathways and phenotypes by systematic gene overexpression. Molecular Cell. 21: 319-30. PMID 16455487 DOI: 10.1016/j.molcel.2005.12.011  0.48
2006 Friesen H, Humphries C, Ho Y, Schub O, Colwill K, Andrews B. Characterization of the yeast amphiphysins Rvs161p and Rvs167p reveals roles for the Rvs heterodimer in vivo. Molecular Biology of the Cell. 17: 1306-21. PMID 16394103 DOI: 10.1091/mbc.E05-06-0476  0.48
2005 Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, ... ... Andrews B, et al. Global analysis of protein phosphorylation in yeast. Nature. 438: 679-84. PMID 16319894 DOI: 10.1038/nature04187  1
2005 Schuldiner M, Collins SR, Thompson NJ, Denic V, Bhamidipati A, Punna T, Ihmels J, Andrews B, Boone C, Greenblatt JF, Weissman JS, Krogan NJ. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell. 123: 507-19. PMID 16269340 DOI: 10.1016/j.cell.2005.08.031  1
2005 Measday V, Baetz K, Guzzo J, Yuen K, Kwok T, Sheikh B, Ding H, Ueta R, Hoac T, Cheng B, Pot I, Tong A, Yamaguchi-Iwai Y, Boone C, Hieter P, ... Andrews B, et al. Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. Proceedings of the National Academy of Sciences of the United States of America. 102: 13956-61. PMID 16172405 DOI: 10.1073/pnas.0503504102  1
2005 Davierwala AP, Haynes J, Li Z, Brost RL, Robinson MD, Yu L, Mnaimneh S, Ding H, Zhu H, Chen Y, Cheng X, Brown GW, Boone C, Andrews BJ, Hughes TR. The synthetic genetic interaction spectrum of essential genes. Nature Genetics. 37: 1147-52. PMID 16155567 DOI: 10.1038/ng1640  1
2005 Zhang LV, King OD, Wong SL, Goldberg DS, Tong AH, Lesage G, Andrews B, Bussey H, Boone C, Roth FP. Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network. Journal of Biology. 4: 6. PMID 15982408 DOI: 10.1186/jbiol23  1
2005 Menon BB, Sarma NJ, Pasula S, Deminoff SJ, Willis KA, Barbara KE, Andrews B, Santangelo GM. Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 102: 5749-54. PMID 15817685 DOI: 10.1073/pnas.0501768102  1
2005 Friesen H, Colwill K, Robertson K, Schub O, Andrews B. Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking. Genetics. 170: 555-68. PMID 15802519 DOI: 10.1534/genetics.104.040063  0.48
2004 Mnaimneh S, Davierwala AP, Haynes J, Moffat J, Peng WT, Zhang W, Yang X, Pootoolal J, Chua G, Lopez A, Trochesset M, Morse D, Krogan NJ, Hiley SL, Li Z, ... ... Andrews BJ, et al. Exploration of essential gene functions via titratable promoter alleles. Cell. 118: 31-44. PMID 15242642 DOI: 10.1016/j.cell.2004.06.013  1
2004 Moffat J, Andrews B. Late-G1 cyclin-CDK activity is essential for control of cell morphogenesis in budding yeast. Nature Cell Biology. 6: 59-66. PMID 14688790 DOI: 10.1038/ncb1078  0.8
2003 Willis KA, Barbara KE, Menon BB, Moffat J, Andrews B, Santangelo GM. The global transcriptional activator of Saccharomyces cerevisiae, Gcr1p, mediates the response to glucose by stimulating protein synthesis and CLN-dependent cell cycle progression. Genetics. 165: 1017-29. PMID 14668361  1
2003 Moffat J, Andrews B. Ac'septin' a signal: kinase regulation by septins. Developmental Cell. 5: 528-30. PMID 14536051  0.8
2002 Humphries CL, Balcer HI, D'Agostino JL, Winsor B, Drubin DG, Barnes G, Andrews BJ, Goode BL. Direct regulation of Arp2/3 complex activity and function by the actin binding protein coronin. The Journal of Cell Biology. 159: 993-1004. PMID 12499356 DOI: 10.1083/jcb.200206113  1
2002 Huang D, Moffat J, Andrews B. Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity. Molecular and Cellular Biology. 22: 5076-88. PMID 12077337  0.8
2001 McBride HJ, Sil A, Measday V, Yu Y, Moffat J, Maxon ME, Herskowitz I, Andrews B, Stillman DJ. The protein kinase Pho85 is required for asymmetric accumulation of the Ash1 protein in Saccharomyces cerevisiae. Molecular Microbiology. 42: 345-53. PMID 11703659 DOI: 10.1046/j.1365-2958.2001.02601.x  1
2001 Baetz K, Moffat J, Haynes J, Chang M, Andrews B. Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4. Molecular and Cellular Biology. 21: 6515-28. PMID 11533240 DOI: 10.1128/MCB.21.19.6515-6528.2001  1
2000 Moffat J, Huang D, Andrews B. Functions of Pho85 cyclin-dependent kinases in budding yeast. Progress in Cell Cycle Research. 4: 97-106. PMID 10740818  0.8
2000 Measday V, McBride H, Moffat J, Stillman D, Andrews B. Interactions between Pho85 cyclin-dependent kinase complexes and the Swi5 transcription factor in budding yeast. Molecular Microbiology. 35: 825-34. PMID 10692159 DOI: 10.1046/j.1365-2958.2000.01754.x  1
1999 Huang D, Patrick G, Moffat J, Tsai LH, Andrews B. Mammalian Cdk5 is a functional homologue of the budding yeast Pho85 cyclin-dependent protein kinase. Proceedings of the National Academy of Sciences of the United States of America. 96: 14445-50. PMID 10588725 DOI: 10.1073/pnas.96.25.14445  1
1998 Huang D, Moffat J, Wilson WA, Moore L, Cheng C, Roach PJ, Andrews B. Cyclin partners determine Pho85 protein kinase substrate specificity in vitro and in vivo: control of glycogen biosynthesis by Pcl8 and Pcl10. Molecular and Cellular Biology. 18: 3289-99. PMID 9584169  0.8
1991 Herskowitz I, Ogas J, Andrews BJ, Chang F. Regulators of synthesis and activity of the G1 cyclins of budding yeast. Cold Spring Harbor Symposia On Quantitative Biology. 56: 33-40. PMID 1840254  1
1991 Ogas J, Andrews BJ, Herskowitz I. Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription. Cell. 66: 1015-26. PMID 1832336 DOI: 10.1016/0092-8674(91)90445-5  1
1990 Andrews BJ, Herskowitz I. Regulation of cell cycle-dependent gene expression in yeast. The Journal of Biological Chemistry. 265: 14057-60. PMID 2201678  1
1989 Andrews BJ, Herskowitz I. The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription. Nature. 342: 830-3. PMID 2689885 DOI: 10.1038/342830a0  1
1989 Andrews BJ, Herskowitz I. Identification of a DNA binding factor involved in cell-cycle control of the yeast HO gene. Cell. 57: 21-9. PMID 2649246 DOI: 10.1016/0092-8674(89)90168-2  1
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