Craig A. Bingman - Related publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Biochemistry, X-ray diffraction, Macromolecular Structure
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Manne K, Chattopadhyay D, Agarwal V, Blom AM, Khare B, Chakravarthy S, Chang C, Ton-That H, Narayana SVL. Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin. Acta Crystallographica. Section D, Structural Biology. 76: 759-770. PMID 32744258 DOI: 10.1107/S2059798320008116   
2020 Maryam A, Khalid RR, Vedithi SC, Ece A, Çınaroğlu SS, Siddiqi AR, Blundell TL. Exploring the structural basis of conformational heterogeneity and autoinhibition of human cGMP-specific protein kinase Iα through computational modelling and molecular dynamics simulations. Computational and Structural Biotechnology Journal. 18: 1625-1638. PMID 32670503 DOI: 10.1016/j.csbj.2020.06.016   
2020 Potter ZE, Lau HT, Chakraborty S, Fang L, Guttman M, Ong SE, Fowler DM, Maly DJ. Parallel Chemoselective Profiling for Mapping Protein Structure. Cell Chemical Biology. PMID 32649906 DOI: 10.1016/j.chembiol.2020.06.014   
2020 Prajapat M, Sarma P, Shekhar N, Prakash A, Avti P, Bhattacharyya A, Kaur H, Kumar S, Bansal S, Sharma AR, Medhi B. Update on the target structures of SARS-CoV-2: A systematic review. Indian Journal of Pharmacology. 52: 142-149. PMID 32565603 DOI: 10.4103/ijp.IJP_338_20   
2020 Nebl S, Alwan WS, Williams ML, Sharma G, Taylor A, Doak BC, Wilde KL, McMahon RM, Halili MA, Martin JL, Capuano B, Fenwick RB, Mohanty B, Scanlon MJ. NMR fragment screening reveals a novel small molecule binding site near the catalytic surface of the disulfide-dithiol oxidoreductase enzyme DsbA from Burkholderia pseudomallei. Journal of Biomolecular Nmr. PMID 32761504 DOI: 10.1007/s10858-020-00339-5   
2020 Tahara S, Mizuno M, Mizutani Y. Nonbonded Atomic Contacts Drive Ultrafast Helix Motions in Myoglobin. The Journal of Physical Chemistry. B. PMID 32510952 DOI: 10.1021/acs.jpcb.0c04772   
2020 Piepoli S, Alt AO, Atilgan C, Mancini EJ, Erman B. Structural analysis of the PATZ1 BTB domain homodimer. Acta Crystallographica. Section D, Structural Biology. 76: 581-593. PMID 32496219 DOI: 10.1107/S2059798320005355   
2020 Kaynak BT, Bahar I, Doruker P. Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions. Computational and Structural Biotechnology Journal. 18: 1577-1586. PMID 32637054 DOI: 10.1016/j.csbj.2020.06.020   
2020 Kilgore H, Latham AP, Ressler VT, Zhang B, Raines RT. Structure and Dynamics of -Glycosylated Human Ribonuclease 1. Biochemistry. PMID 32544330 DOI: 10.1021/acs.biochem.0c00191   
2020 Kumar R, Maksudov F, Kononova O, Marx KA, Barsegov V, Singh BR. Botulinum Endopeptidase: SAXS Experiments and MD Simulations Reveal Extended Solution Structures That Account for Its Biochemical Properties. The Journal of Physical Chemistry. B. PMID 32543194 DOI: 10.1021/acs.jpcb.0c02817   
2020 Chan-Yao-Chong M, Marsin S, Quevillon-Cheruel S, Durand D, Ha-Duong T. Structural ensemble and biological activity of DciA intrinsically disordered region. Journal of Structural Biology. 107573. PMID 32679070 DOI: 10.1016/j.jsb.2020.107573   
2020 Lüthje S, Ramanathan K. In Silico Analysis of Class III Peroxidases: Hypothetical Structure, Ligand Binding Sites, Posttranslational Modifications, and Interaction with Substrates. Methods in Molecular Biology (Clifton, N.J.). 2139: 325-339. PMID 32462597 DOI: 10.1007/978-1-0716-0528-8_24   
2020 Na I, Choi S, Son SH, Uversky VN, Kim CG. Drug Discovery Targeting the Disorder-To-Order Transition Regions through the Conformational Diversity Mimicking and Statistical Analysis. International Journal of Molecular Sciences. 21. PMID 32722024 DOI: 10.3390/ijms21155248   
2020 Zhu M, Ou D, Khan MH, Zhao S, Zhu Z, Niu L. Structural insights into the formation of oligomeric state by a type I Hsp40 chaperone. Biochimie. PMID 32621942 DOI: 10.1016/j.biochi.2020.06.009   
2020 Min K, Yoon HJ, Park JY, Baidya M, Dwivedi-Agnihotri H, Maharana J, Chaturvedi M, Chung KY, Shukla AK, Lee HH. Crystal Structure of β-Arrestin 2 in Complex with CXCR7 Phosphopeptide. Structure (London, England : 1993). PMID 32579945 DOI: 10.1016/j.str.2020.06.002   
2020 Deb A, Kaur Grewal R, Roy S, Mitra D. Residue Interaction Dynamics in Vaucheria Aureochrome1 LOV: Bridging Theory and Experiments. Proteins. PMID 32683714 DOI: 10.1002/prot.25984   
2020 Ye Q, West AMV, Silletti S, Corbett KD. Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein. Protein Science : a Publication of the Protein Society. PMID 32654247 DOI: 10.1002/pro.3909   
2020 Chang TH, Hsieh FL, Smallwood PM, Gabelli SB, Nathans J. Structure of the RECK CC domain, an evolutionary anomaly. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541044 DOI: 10.1073/pnas.2006332117   
2020 Campbell AC, Stiers KM, Martin Del Campo JS, Mehra-Chaudhary R, Sobrado P, Tanner JJ. Trapping conformational states of a flavin-dependent N-monooxygenase in crystallo reveals protein and flavin dynamics. The Journal of Biological Chemistry. PMID 32723870 DOI: 10.1074/jbc.RA120.014750   
2020 Cao Y, Park SJ, Im W. A Systematic Analysis of Protein-Carbohydrate Interactions in the PDB. Glycobiology. PMID 32614943 DOI: 10.1093/glycob/cwaa062   
2020 Thakur A, Sharma K, Jaiswal K, Goyal A. Structure and dynamics analysis of a family 43 glycoside hydrolase α-L-arabinofuranosidase (PsGH43_12) from Pseudopedobacter saltans by computational modeling and small-angle X-ray scattering. International Journal of Biological Macromolecules. 163: 582-592. PMID 32640320 DOI: 10.1016/j.ijbiomac.2020.07.007   
2020 Butt BG, Scourfield EJ, Graham SC. Non-native fold of the putative VPS39 zinc finger domain. Wellcome Open Research. 5: 154. PMID 32724865 DOI: 10.12688/wellcomeopenres.16078.1   
2020 Geiger JH, Ghanbarpour A, Santos EM, Pinger CH, Assar Z, Nasr SH, Vasileiou C, Spence D, Borhan BH. Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering. Chembiochem : a European Journal of Chemical Biology. PMID 32608180 DOI: 10.1002/cbic.202000405   
2020 Vignesh R, Aradhyam GK. Change in domain cooperativity drives function of calnuc. Biochemistry. PMID 32543177 DOI: 10.1021/acs.biochem.0c00207   
2020 Xu B, Liu D, Wang Z, Tian R, Zuo Y. Multi-substrate selectivity based on key loops and non-homologous domains: new insight into ALKBH family. Cellular and Molecular Life Sciences : Cmls. PMID 32642789 DOI: 10.1007/s00018-020-03594-9   
2020 Jaworek MW, Ruggiero A, Graziano G, Winter R, Vitagliano L. On the extraordinary pressure stability of the Thermotoga maritima arginine binding protein and its folded fragments - a high-pressure FTIR spectroscopy study. Physical Chemistry Chemical Physics : Pccp. 22: 11244-11248. PMID 32400824 DOI: 10.1039/d0cp01618g   
2020 Grant BJ, Skjaerven L, Yao XQ. The Bio3D Packages for Structural Bioinformatics. Protein Science : a Publication of the Protein Society. PMID 32734663 DOI: 10.1002/pro.3923   
2020 Panchamia B, Raimalani V, Prashar V, Kumar M, Ratna Prabha C. Structural and Functional Characterisation of the Domains of Ubiquitin-Activating Enzyme (E1) of Saccharomyces cerevisiae. Cell Biochemistry and Biophysics. PMID 32583128 DOI: 10.1007/s12013-020-00924-3   
2020 Stelzl LL, Mavridou DAI, Saridakis E, Gonzalez D, Baldwin AJ, Ferguson SJ, Sansom MS, Redfield C. Local frustration determines loop opening during the catalytic cycle of an oxidoreductase. Elife. 9. PMID 32568066 DOI: 10.7554/eLife.54661   
2020 Maharjan R, Fukuda Y, Nakayama T, Nakayama T, Hamada H, Ozaki SI, Inoue T. Crown-ether-mediated crystal structures of the glycosyltransferase PaGT3 from Phytolacca americana. Acta Crystallographica. Section D, Structural Biology. 76: 521-530. PMID 32496214 DOI: 10.1107/S2059798320005306   
2020 Schubeis T, Schwarzer TS, Le Marchand T, Stanek J, Movellan KT, Castiglione K, Pintacuda G, Andreas LB. Resonance assignment of the outer membrane protein AlkL in lipid bilayers by proton-detected solid-state NMR. Biomolecular Nmr Assignments. PMID 32607893 DOI: 10.1007/s12104-020-09964-5   
2020 Visconti L, Toto A, Jarvis JA, Troilo F, Malagrinò F, De Simone A, Gianni S. Demonstration of Binding Induced Structural Plasticity in a SH2 Domain. Frontiers in Molecular Biosciences. 7: 89. PMID 32528972 DOI: 10.3389/fmolb.2020.00089   
2020 Mahieu E, Covès J, Krüger G, Martel A, Moulin M, Carl N, Härtlein M, Carlomagno T, Franzetti B, Gabel F. Observing Protein Degradation by the PAN-20S Proteasome by Time-Resolved Neutron Scattering. Biophysical Journal. PMID 32640186 DOI: 10.1016/j.bpj.2020.06.015   
2020 Sagar A, Svergun D, Bernadó P. Structural Analyses of Intrinsically Disordered Proteins by Small-Angle X-Ray Scattering. Methods in Molecular Biology (Clifton, N.J.). 2141: 249-269. PMID 32696361 DOI: 10.1007/978-1-0716-0524-0_12   
2020 Guo J, Douangamath A, Song W, Coker AR, Chan AWE, Wood SP, Cooper JB, Resnick E, London N, Delft FV. -screening for discovery of human norovirus 3C-like protease inhibitors. Journal of Structural Biology: X. 4: 100031. PMID 32743543 DOI: 10.1016/j.yjsbx.2020.100031   
2020 Pan Y, Shlyakhtenko LS, Lyubchenko YL. High-speed atomic force microscopy directly visualizes conformational dynamics of the HIV Vif protein in complex with three host proteins. The Journal of Biological Chemistry. PMID 32587092 DOI: 10.1074/jbc.RA120.014442   
2020 Rackovsky S, Scheraga HA. The structure of protein dynamic space. Proceedings of the National Academy of Sciences of the United States of America. PMID 32759212 DOI: 10.1073/pnas.2008873117   
2020 Masutani M, Sakurai S, Shimizu T, Ohto U. Crystal structure of TEX101, a glycoprotein essential for male fertility, reveals the presence of tandemly arranged Ly6/uPAR domains. Febs Letters. PMID 32608065 DOI: 10.1002/1873-3468.13875   
2020 Lou JW, Mazhab-Jafari MT. Steric occlusion regulates proximal interactions of acyl carrier protein domain in fungal fatty acid synthase. Communications Biology. 3: 274. PMID 32471977 DOI: 10.1038/s42003-020-0997-y   
2020 Abideen ZU, Ahmad A, Usman M, Majaz S, Ali W, Noreen S, Mahmood T, Nouroz F. Dynamics and conformational propensities of staphylococcal CntA. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 32573341 DOI: 10.1080/07391102.2020.1782263   
2020 Tomiczek B, Delewski W, Nierzwicki L, Stolarska M, Grochowina I, Schilke B, Dutkiewicz R, Uzarska MA, Ciesielski SJ, Czub J, Craig EA, Marszalek J. Two-step mechanism of J-domain action in driving Hsp70 function. Plos Computational Biology. 16: e1007913. PMID 32479549 DOI: 10.1371/journal.pcbi.1007913   
2020 Bhat AS, Kinch LN, Grishin NV. β-Strand-mediated interactions of protein domains. Proteins. PMID 32543729 DOI: 10.1002/prot.25970   
2020 Pinter TBJ, Manickas EC, Koebke KJ, Tolbert AE, Deb A, Penner-Hahn JE, Pecoraro VL. Making or breaking metal-dependent catalytic activity: The role of stammers in designed three-stranded coiled coils. Angewandte Chemie (International Ed. in English). PMID 32748510 DOI: 10.1002/anie.202008356   
2020 Yang F, Mao C, Guo L, Lin J, Ming Q, Xiao P, Wu X, Shen Q, Guo S, Shen DD, Lu R, Zhang L, Huang S, Ping Y, Zhang C, et al. Structural basis of GPBAR activation and bile acid recognition. Nature. PMID 32698187 DOI: 10.1038/s41586-020-2569-1   
2020 Song WS, Hong HJ, Yoon SI. Structural study of the flagellar junction protein FlgL from Legionella pneumophila. Biochemical and Biophysical Research Communications. 529: 513-518. PMID 32703460 DOI: 10.1016/j.bbrc.2020.06.012   
2020 Hilger D, Kumar KK, Hu H, Pedersen MF, O'Brien ES, Giehm L, Jennings C, Eskici G, Inoue A, Lerch M, Mathiesen JM, Skiniotis G, Kobilka BK. Structural insights into differences in G protein activation by family A and family B GPCRs. Science (New York, N.Y.). 369. PMID 32732395 DOI: 10.1126/science.aba3373   
2020 Ruffolo JA, Guerra C, Mahajan SP, Sulam J, Gray JJ. Geometric potentials from deep learning improve prediction of CDR H3 loop structures. Bioinformatics (Oxford, England). 36: i268-i275. PMID 32657412 DOI: 10.1093/bioinformatics/btaa457   
2020 Palomino-Hernandez O, Buratti FA, Sacco PS, Rossetti G, Carloni P, Fernandez CO. Role of Tyr-39 for the Structural Features of α-Synuclein and for the Interaction with a Strong Modulator of Its Amyloid Assembly. International Journal of Molecular Sciences. 21. PMID 32709107 DOI: 10.3390/ijms21145061   
2020 Bhattacharya S, Sah PP, Banerjee A, Ray S. Structural impact due to PPQEE deletion in multiple cancer associated protein - Integrin αV: An In silico exploration. Bio Systems. 104216. PMID 32777252 DOI: 10.1016/j.biosystems.2020.104216   
2020 Arora Verasztó H, Logotheti M, Albrecht R, Leitner A, Zhu H, Hartmann MD. Architecture and functional dynamics of the pentafunctional AROM complex. Nature Chemical Biology. PMID 32632294 DOI: 10.1038/s41589-020-0587-9