Year |
Citation |
Score |
2024 |
Chen Z, Linton JM, Xia S, Fan X, Yu D, Wang J, Zhu R, Elowitz MB. A synthetic protein-level neural network in mammalian cells. Science (New York, N.Y.). 386: 1243-1250. PMID 39666795 DOI: 10.1126/science.add8468 |
0.706 |
|
2023 |
Parres-Gold J, Levine M, Emert B, Stuart A, Elowitz MB. Principles of Computation by Competitive Protein Dimerization Networks. Biorxiv : the Preprint Server For Biology. PMID 37961250 DOI: 10.1101/2023.10.30.564854 |
0.763 |
|
2023 |
Zhu R, Santat LA, Markson JS, Nandagopal N, Gregrowicz J, Elowitz MB. Reconstitution of morphogen shuttling circuits. Science Advances. 9: eadf9336. PMID 37436981 DOI: 10.1126/sciadv.adf9336 |
0.765 |
|
2022 |
Cabera A, Edelstein HI, Glykofrydis F, Love KS, Palacios S, Tycko J, Zhang M, Lensch S, Shields CE, Livingston M, Weiss R, Zhao H, Haynes KA, Morsut L, Chen YY, ... ... Elowitz MB, et al. The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems. 13: 950-973. PMID 36549273 DOI: 10.1016/j.cels.2022.11.005 |
0.712 |
|
2022 |
Zhu R, Del Rio-Salgado JM, Garcia-Ojalvo J, Elowitz MB. Synthetic multistability in mammalian cells. Science (New York, N.Y.). 375: eabg9765. PMID 35050677 DOI: 10.1126/science.abg9765 |
0.307 |
|
2021 |
Cable J, Elowitz MB, Domingos AI, Habib N, Itzkovitz S, Hamidzada H, Balzer MS, Yanai I, Liberali P, Whited J, Streets A, Cai L, Stergachis AB, Hong CKY, Keren L, et al. Single cell biology-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 34605044 DOI: 10.1111/nyas.14692 |
0.461 |
|
2021 |
Chen Z, Elowitz MB. Programmable protein circuit design. Cell. PMID 33848464 DOI: 10.1016/j.cell.2021.03.007 |
0.693 |
|
2021 |
Chow KK, Budde MW, Granados AA, Cabrera M, Yoon S, Cho S, Huang TH, Koulena N, Frieda KL, Cai L, Lois C, Elowitz MB. Imaging cell lineage with a synthetic digital recording system. Science (New York, N.Y.). 372. PMID 33833095 DOI: 10.1126/science.abb3099 |
0.465 |
|
2020 |
Askary A, Sanchez-Guardado L, Linton JM, Chadly DM, Budde MW, Cai L, Lois C, Elowitz MB. Publisher Correction: In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription. Nature Biotechnology. PMID 31988471 DOI: 10.1038/S41587-020-0432-4 |
0.427 |
|
2019 |
Askary A, Sanchez-Guardado L, Linton JM, Chadly DM, Budde MW, Cai L, Lois C, Elowitz MB. In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription. Nature Biotechnology. PMID 31740838 DOI: 10.1038/S41587-019-0299-4 |
0.485 |
|
2019 |
Li P, Elowitz MB. Communication codes in developmental signaling pathways. Development (Cambridge, England). 146. PMID 31249008 DOI: 10.1242/Dev.170977 |
0.701 |
|
2019 |
Ding F, Elowitz MB. Constitutive splicing and economies of scale in gene expression. Nature Structural & Molecular Biology. PMID 31133700 DOI: 10.1038/S41594-019-0226-X |
0.35 |
|
2019 |
Nandagopal N, Santat LA, Elowitz MB. activation in the Notch signaling pathway. Elife. 8. PMID 30628888 DOI: 10.7554/Elife.37880 |
0.771 |
|
2018 |
Ng KK, Yui MA, Mehta A, Siu S, Irwin B, Pease S, Hirose S, Elowitz MB, Rothenberg EV, Kueh HY. A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment. Elife. 7. PMID 30457103 DOI: 10.7554/Elife.37851 |
0.404 |
|
2018 |
Martinez-Corral R, Raimundez E, Lin Y, Elowitz MB, Garcia-Ojalvo J. Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback. Cell Systems. PMID 30316816 DOI: 10.1016/J.Cels.2018.08.012 |
0.361 |
|
2018 |
Gao XJ, Chong LS, Kim MS, Elowitz MB. Programmable protein circuits in living cells. Science (New York, N.Y.). 361: 1252-1258. PMID 30237357 DOI: 10.1126/science.aat5062 |
0.305 |
|
2018 |
Rosenthal AZ, Qi Y, Hormoz S, Park J, Li SH, Elowitz MB. Metabolic interactions between dynamic bacterial subpopulations. Elife. 7. PMID 29809139 DOI: 10.7554/Elife.33099 |
0.309 |
|
2018 |
Li P, Markson JS, Wang S, Chen S, Vachharajani V, Elowitz MB. Morphogen gradient reconstitution reveals Hedgehog pathway design principles. Science (New York, N.Y.). PMID 29622726 DOI: 10.1126/Science.Aao0645 |
0.711 |
|
2018 |
Park J, Dies M, Lin Y, Hormoz S, Smith-Unna SE, Quinodoz S, Hernández-Jiménez MJ, Garcia-Ojalvo J, Locke JCW, Elowitz MB. Molecular Time Sharing through Dynamic Pulsing in Single Cells. Cell Systems. PMID 29454936 DOI: 10.1016/J.Cels.2018.01.011 |
0.685 |
|
2018 |
Nandagopal N, Santat LA, LeBon L, Sprinzak D, Bronner ME, Elowitz MB. Dynamic Ligand Discrimination in the Notch Signaling Pathway. Cell. PMID 29398116 DOI: 10.1016/J.Cell.2018.01.002 |
0.777 |
|
2018 |
Nandagopal N, Santat LA, Elowitz MB. Author response: Cis-activation in the Notch signaling pathway Elife. DOI: 10.7554/Elife.37880.024 |
0.744 |
|
2018 |
Ng KK, Yui MA, Mehta A, Siu S, Irwin B, Pease S, Hirose S, Elowitz MB, Rothenberg EV, Kueh HY. Author response: A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment Elife. DOI: 10.7554/Elife.37851.038 |
0.334 |
|
2017 |
Antebi YE, Nandagopal N, Elowitz MB. An operational view of intercellular signaling pathways. Current Opinion in Systems Biology. 1: 16-24. PMID 29104946 DOI: 10.1016/J.Coisb.2016.12.003 |
0.762 |
|
2017 |
Antebi YE, Linton JM, Klumpe H, Bintu B, Gong M, Su C, McCardell R, Elowitz MB. Combinatorial Signal Perception in the BMP Pathway. Cell. 170: 1184-1196.e24. PMID 28886385 DOI: 10.1016/J.Cell.2017.08.015 |
0.392 |
|
2017 |
Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I. Challenges and emerging directions in single-cell analysis. Genome Biology. 18: 84. PMID 28482897 DOI: 10.1186/S13059-017-1218-Y |
0.527 |
|
2017 |
Tycko J, Van MV, Elowitz MB, Bintu L. Advancing towards a global mammalian gene regulation model through single-cell analysis and synthetic biology Current Opinion in Biomedical Engineering. 4: 174-193. DOI: 10.1016/J.Cobme.2017.10.011 |
0.735 |
|
2016 |
Hormoz S, Singer ZS, Linton JM, Antebi YE, Shraiman BI, Elowitz MB. Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements. Cell Systems. 3: 419-433.e8. PMID 27883889 DOI: 10.1016/J.Cels.2016.10.015 |
0.361 |
|
2016 |
Frieda KL, Linton JM, Hormoz S, Choi J, Chow KK, Singer ZS, Budde MW, Elowitz MB, Cai L. Synthetic recording and in situ readout of lineage information in single cells. Nature. PMID 27869821 DOI: 10.1038/Nature20777 |
0.554 |
|
2016 |
Gao XJ, Elowitz MB. Synthetic biology: Precision timing in a cell. Nature. PMID 27732579 DOI: 10.1038/Nature19478 |
0.392 |
|
2016 |
Kueh HY, Yui MA, Ng KK, Pease SS, Zhang JA, Damle SS, Freedman G, Siu S, Bernstein ID, Elowitz MB, Rothenberg EV. Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment. Nature Immunology. 17: 956-65. PMID 27376470 DOI: 10.1038/Ni.3514 |
0.4 |
|
2016 |
Lin Y, Elowitz MB. Central Dogma Goes Digital. Molecular Cell. 61: 791-792. PMID 26990983 DOI: 10.1016/J.Molcel.2016.03.005 |
0.304 |
|
2016 |
Bintu L, Yong J, Antebi YE, McCue K, Kazuki Y, Uno N, Oshimura M, Elowitz MB. Dynamics of epigenetic regulation at the single-cell level. Science (New York, N.Y.). 351: 720-4. PMID 26912859 DOI: 10.1126/Science.Aab2956 |
0.718 |
|
2015 |
Lin Y, Sohn CH, Dalal CK, Cai L, Elowitz MB. Combinatorial gene regulation by modulation of relative pulse timing. Nature. PMID 26466562 DOI: 10.1038/Nature15710 |
0.566 |
|
2015 |
Kim DH, Marinov GK, Pepke S, Singer ZS, He P, Williams B, Schroth GP, Elowitz MB, Wold BJ. Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming. Cell Stem Cell. 16: 88-101. PMID 25575081 DOI: 10.1016/J.Stem.2014.11.005 |
0.414 |
|
2014 |
Markson JS, Elowitz MB. Synthetic biology of multicellular systems: new platforms and applications for animal cells and organisms. Acs Synthetic Biology. 3: 875-6. PMID 25524091 DOI: 10.1021/Sb500358Y |
0.341 |
|
2014 |
Levine JH, Elowitz MB. Polyphasic feedback enables tunable cellular timers. Current Biology : Cb. 24: R994-5. PMID 25442853 DOI: 10.1016/J.Cub.2014.08.030 |
0.642 |
|
2014 |
LeBon L, Lee TV, Sprinzak D, Jafar-Nejad H, Elowitz MB. Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states. Elife. 3: e02950. PMID 25255098 DOI: 10.7554/Elife.02950 |
0.717 |
|
2014 |
Dalal CK, Cai L, Lin Y, Rahbar K, Elowitz MB. Pulsatile dynamics in the yeast proteome. Current Biology : Cb. 24: 2189-94. PMID 25220054 DOI: 10.1016/J.Cub.2014.07.076 |
0.535 |
|
2014 |
Singer ZS, Yong J, Tischler J, Hackett JA, Altinok A, Surani MA, Cai L, Elowitz MB. Dynamic heterogeneity and DNA methylation in embryonic stem cells. Molecular Cell. 55: 319-31. PMID 25038413 DOI: 10.1016/J.Molcel.2014.06.029 |
0.563 |
|
2014 |
Tan FE, Elowitz MB. Brf1 posttranscriptionally regulates pluripotency and differentiation responses downstream of Erk MAP kinase. Proceedings of the National Academy of Sciences of the United States of America. 111: E1740-8. PMID 24733888 DOI: 10.1073/Pnas.1320873111 |
0.681 |
|
2014 |
LeBon L, Lee TV, Sprinzak D, Jafar-Nejad H, Elowitz MB. Correction: Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states Elife. 3. DOI: 10.7554/Elife.04998 |
0.718 |
|
2014 |
Sanghez V, Kee D, Beuder S, Rux D, Osawa M, Markson J, Elowitz M, Kyba M, Iacovino M. HoxA3 Controls Notch Pathway to Repress Blood Development Blood. 124: 4338-4338. DOI: 10.1182/Blood.V124.21.4338.4338 |
0.349 |
|
2014 |
Kueh HY, Elowitz M, Rothenberg E. Macrophage and T-cell fate control: insights from tracking transcription factor dynamics in single cells Experimental Hematology. 42: S16. DOI: 10.1016/J.Exphem.2014.07.054 |
0.456 |
|
2013 |
Levine JH, Lin Y, Elowitz MB. Functional roles of pulsing in genetic circuits. Science (New York, N.Y.). 342: 1193-200. PMID 24311681 DOI: 10.1126/Science.1239999 |
0.653 |
|
2013 |
Kueh HY, Champhekar A, Champhekhar A, Nutt SL, Elowitz MB, Rothenberg EV. Positive feedback between PU.1 and the cell cycle controls myeloid differentiation. Science (New York, N.Y.). 341: 670-3. PMID 23868921 DOI: 10.1126/Science.1240831 |
0.394 |
|
2013 |
Young JW, Locke JC, Elowitz MB. Rate of environmental change determines stress response specificity. Proceedings of the National Academy of Sciences of the United States of America. 110: 4140-5. PMID 23407164 DOI: 10.1073/Pnas.1213060110 |
0.629 |
|
2012 |
Levine JH, Fontes ME, Dworkin J, Elowitz MB. Pulsed feedback defers cellular differentiation. Plos Biology. 10: e1001252. PMID 22303282 DOI: 10.1371/Journal.Pbio.1001252 |
0.617 |
|
2012 |
Young JW, Locke JC, Altinok A, Rosenfeld N, Bacarian T, Swain PS, Mjolsness E, Elowitz MB. Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy. Nature Protocols. 7: 80-8. PMID 22179594 DOI: 10.1038/Nprot.2011.432 |
0.679 |
|
2011 |
Sen S, Garcia-Ojalvo J, Elowitz MB. Dynamical consequences of bandpass feedback loops in a bacterial phosphorelay. Plos One. 6: e25102. PMID 21980382 DOI: 10.1371/Journal.Pone.0025102 |
0.622 |
|
2011 |
Locke JC, Young JW, Fontes M, Hernández Jiménez MJ, Elowitz MB. Stochastic pulse regulation in bacterial stress response. Science (New York, N.Y.). 334: 366-9. PMID 21979936 DOI: 10.1126/Science.1208144 |
0.669 |
|
2011 |
Nandagopal N, Elowitz MB. Synthetic biology: integrated gene circuits. Science (New York, N.Y.). 333: 1244-8. PMID 21885772 DOI: 10.1126/Science.1207084 |
0.763 |
|
2011 |
Sprinzak D, Lakhanpal A, LeBon L, Garcia-Ojalvo J, Elowitz MB. Mutual inactivation of Notch receptors and ligands facilitates developmental patterning. Plos Computational Biology. 7: e1002069. PMID 21695234 DOI: 10.1371/Journal.Pcbi.1002069 |
0.789 |
|
2011 |
Young JW, Elowitz MB. Mixed messages: how bacteria resolve conflicting signals. Molecular Cell. 42: 405-6. PMID 21596304 DOI: 10.1016/J.Molcel.2011.05.005 |
0.377 |
|
2010 |
Acar M, Pando BF, Arnold FH, Elowitz MB, van Oudenaarden A. A general mechanism for network-dosage compensation in gene circuits. Science (New York, N.Y.). 329: 1656-60. PMID 20929850 DOI: 10.1126/Science.1190544 |
0.33 |
|
2010 |
Eldar A, Elowitz MB. Functional roles for noise in genetic circuits. Nature. 467: 167-73. PMID 20829787 DOI: 10.1038/Nature09326 |
0.356 |
|
2010 |
Cox RS, Dunlop MJ, Elowitz MB. A synthetic three-color scaffold for monitoring genetic regulation and noise. Journal of Biological Engineering. 4: 10. PMID 20646328 DOI: 10.1186/1754-1611-4-10 |
0.391 |
|
2010 |
Sprinzak D, Lakhanpal A, Lebon L, Santat LA, Fontes ME, Anderson GA, Garcia-Ojalvo J, Elowitz MB. Cis-interactions between Notch and Delta generate mutually exclusive signalling states. Nature. 465: 86-90. PMID 20418862 DOI: 10.1038/Nature08959 |
0.798 |
|
2010 |
Elowitz M. Signaling Dynamics at the Single Cell Level Biophysical Journal. 98: 754a. DOI: 10.1016/J.Bpj.2009.12.4135 |
0.42 |
|
2009 |
Ca?atay T, Turcotte M, Elowitz MB, Garcia-Ojalvo J, Süel GM. Architecture-dependent noise discriminates functionally analogous differentiation circuits. Cell. 139: 512-22. PMID 19853288 DOI: 10.1016/J.Cell.2009.07.046 |
0.719 |
|
2009 |
Eldar A, Chary VK, Xenopoulos P, Fontes ME, Losón OC, Dworkin J, Piggot PJ, Elowitz MB. Partial penetrance facilitates developmental evolution in bacteria. Nature. 460: 510-4. PMID 19578359 DOI: 10.1038/Nature08150 |
0.389 |
|
2009 |
Locke JC, Elowitz MB. Using movies to analyse gene circuit dynamics in single cells. Nature Reviews. Microbiology. 7: 383-92. PMID 19369953 DOI: 10.1038/Nrmicro2056 |
0.703 |
|
2008 |
Dunlop MJ, Cox RS, Levine JH, Murray RM, Elowitz MB. Regulatory activity revealed by dynamic correlations in gene expression noise. Nature Genetics. 40: 1493-8. PMID 19029898 DOI: 10.1038/Ng.281 |
0.592 |
|
2008 |
Cai L, Dalal CK, Elowitz MB. Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature. 455: 485-90. PMID 18818649 DOI: 10.1038/Nature07292 |
0.517 |
|
2008 |
Presser A, Elowitz MB, Kellis M, Kishony R. The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication. Proceedings of the National Academy of Sciences of the United States of America. 105: 950-4. PMID 18199840 DOI: 10.1073/Pnas.0707293105 |
0.617 |
|
2007 |
Cox RS, Surette MG, Elowitz MB. Programming gene expression with combinatorial promoters. Molecular Systems Biology. 3: 145. PMID 18004278 DOI: 10.1038/Msb4100187 |
0.342 |
|
2007 |
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Accurate prediction of gene feedback circuit behavior from component properties. Molecular Systems Biology. 3: 143. PMID 18004276 DOI: 10.1038/Msb4100185 |
0.369 |
|
2007 |
Süel GM, Kulkarni RP, Dworkin J, Garcia-Ojalvo J, Elowitz MB. Tunability and noise dependence in differentiation dynamics. Science (New York, N.Y.). 315: 1716-9. PMID 17379809 DOI: 10.1126/Science.1137455 |
0.698 |
|
2006 |
Süel GM, Garcia-Ojalvo J, Liberman LM, Elowitz MB. An excitable gene regulatory circuit induces transient cellular differentiation. Nature. 440: 545-50. PMID 16554821 DOI: 10.1038/Nature04588 |
0.735 |
|
2005 |
Sprinzak D, Elowitz MB. Reconstruction of genetic circuits. Nature. 438: 443-8. PMID 16306982 DOI: 10.1038/Nature04335 |
0.344 |
|
2005 |
Eldar A, Elowitz M. Systems biology: Deviations in mating Nature. 437: 631-632. PMID 16193031 DOI: 10.1038/437631A |
0.333 |
|
2005 |
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Gene regulation at the single-cell level. Science (New York, N.Y.). 307: 1962-5. PMID 15790856 DOI: 10.1126/Science.1106914 |
0.439 |
|
2004 |
Garcia-Ojalvo J, Elowitz MB, Strogatz SH. Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. Proceedings of the National Academy of Sciences of the United States of America. 101: 10955-60. PMID 15256602 DOI: 10.1073/Pnas.0307095101 |
0.337 |
|
2004 |
Lahav G, Rosenfeld N, Sigal A, Geva-Zatorsky N, Levine AJ, Elowitz MB, Alon U. Dynamics of the p53-Mdm2 feedback loop in individual cells. Nature Genetics. 36: 147-50. PMID 14730303 DOI: 10.1038/Ng1293 |
0.657 |
|
2002 |
Rosenfeld N, Elowitz MB, Alon U. Negative autoregulation speeds the response times of transcription networks. Journal of Molecular Biology. 323: 785-93. PMID 12417193 DOI: 10.1016/S0022-2836(02)00994-4 |
0.393 |
|
2002 |
Swain PS, Elowitz MB, Siggia ED. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proceedings of the National Academy of Sciences of the United States of America. 99: 12795-800. PMID 12237400 DOI: 10.1073/Pnas.162041399 |
0.349 |
|
2002 |
Elowitz MB, Levine AJ, Siggia ED, Swain PS. Stochastic gene expression in a single cell. Science (New York, N.Y.). 297: 1183-6. PMID 12183631 DOI: 10.1126/Science.1070919 |
0.349 |
|
2002 |
Guet CC, Elowitz MB, Hsing W, Leibler S. Combinatorial synthesis of genetic networks. Science (New York, N.Y.). 296: 1466-70. PMID 12029133 DOI: 10.1126/Science.1067407 |
0.717 |
|
2000 |
Elowitz MB, Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 403: 335-8. PMID 10659856 DOI: 10.1038/35002125 |
0.623 |
|
1999 |
Elowitz MB, Surette MG, Wolf PE, Stock JB, Leibler S. Protein mobility in the cytoplasm of Escherichia coli. Journal of Bacteriology. 181: 197-203. PMID 9864330 DOI: 10.1128/Jb.181.1.197-203.1999 |
0.57 |
|
1998 |
Surrey T, Elowitz MB, Wolf PE, Yang F, Nédélec F, Shokat K, Leibler S. Chromophore-assisted light inactivation and self-organization of microtubules and motors. Proceedings of the National Academy of Sciences of the United States of America. 95: 4293-8. PMID 9539730 DOI: 10.1073/Pnas.95.8.4293 |
0.695 |
|
1997 |
Elowitz MB, Surette MG, Wolf PE, Stock J, Leibler S. Photoactivation turns green fluorescent protein red. Current Biology : Cb. 7: 809-12. PMID 9368766 DOI: 10.1016/S0960-9822(06)00342-3 |
0.596 |
|
1995 |
Bourdieu L, Duke T, Elowitz MB, Winkelmann DA, Leibler S, Libchaber A. Spiral defects in motility assays: A measure of motor protein force. Physical Review Letters. 75: 176-179. PMID 10059144 DOI: 10.1103/Physrevlett.75.176 |
0.55 |
|
Show low-probability matches. |