Jacques R. Fresco - Publications

Princeton University, Princeton, NJ 
nucleic acid third-strand binding to Watson-Crick duplexes

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Gold MP, Fresco JR. A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs. Journal of Molecular Evolution. PMID 29103173 DOI: 10.1007/S00239-017-9811-Y  0.395
2017 Fresco JR, Amosova O. Site-Specific Self-Catalyzed DNA Depurination: A Biological Mechanism That Leads to Mutations and Creates Sequence Diversity. Annual Review of Biochemistry. 86: 461-484. PMID 28654322 DOI: 10.1146/Annurev-Biochem-070611-095951  0.776
2015 Amosova O, Alvarez-Dominguez JR, Fresco JR. Why the DNA self-depurination mechanism operates in HB-β but not in β-globin paralogs HB-δ, HB-ɛ1, HB-γ1 and HB-γ2. Mutation Research. 778: 11-17. PMID 26042536 DOI: 10.1016/J.Mrfmmm.2015.05.001  0.761
2013 Alvarez-Dominguez JR, Amosova O, Fresco JR. Self-catalytic DNA depurination underlies human β-globin gene mutations at codon 6 that cause anemias and thalassemias. The Journal of Biological Chemistry. 288: 11581-9. PMID 23457306 DOI: 10.1074/Jbc.M113.454744  0.772
2011 Amosova O, Smith A, Fresco JR. The consensus sequence for self-catalyzed site-specific G residue depurination in DNA. The Journal of Biological Chemistry. 286: 36316-21. PMID 21868376 DOI: 10.1074/Jbc.M111.272047  0.779
2011 Amosova O, Kumar V, Deutsch A, Fresco JR. Self-catalyzed site-specific depurination of G residues mediated by cruciform extrusion in closed circular DNA plasmids. The Journal of Biological Chemistry. 286: 36322-30. PMID 21868375 DOI: 10.1074/Jbc.M111.272112  0.779
2007 Varganov Y, Amosova O, Fresco JR. Third strand-mediated psoralen-induced correction of the sickle cell mutation on a plasmid transfected into COS-7 cells. Gene Therapy. 14: 173-9. PMID 16943853 DOI: 10.1038/Sj.Gt.3302850  0.762
2006 Amosova O, Coulter R, Fresco JR. Self-catalyzed site-specific depurination of guanine residues within gene sequences. Proceedings of the National Academy of Sciences of the United States of America. 103: 4392-7. PMID 16537362 DOI: 10.1073/Pnas.0508499103  0.779
2005 Liang H, Landweber LF, Fresco JR. Are stop codons recognized by base triplets in the large ribosomal RNA subunit? Rna (New York, N.Y.). 11: 1478-84. PMID 16199759 DOI: 10.1261/Rna.2780505  0.368
2003 Dolinnaya NG, Fresco JR. Conformational polymorphism of d(A-G)n and related oligonucleotide sequences. Progress in Nucleic Acid Research and Molecular Biology. 75: 321-47. PMID 14604016 DOI: 10.1016/S0079-6603(03)75009-0  0.381
2003 Lavelle L, Fresco JR. Enhanced stabilization of the triplexes d(C(+)-T)(6):d(A-G)(6);d(C-T)(6), d(T)(21):d(A)(21);d(T)(21) and poly r(U:AU) by water structure-making solutes. Biophysical Chemistry. 105: 701-20. PMID 14499928 DOI: 10.1016/S0301-4622(03)00098-X  0.652
2003 Lavelle L, Fresco JR. Stabilization of nucleic acid triplexes by high concentrations of sodium and ammonium salts follows the Hofmeister series. Biophysical Chemistry. 105: 681-99. PMID 14499927 DOI: 10.1016/S0301-4622(03)00097-8  0.653
2003 Broitman SL, Amosova O, Fresco JR. Repairing the Sickle Cell mutation. III. Effect of irradiation wavelength on the specificity and type of photoproduct formed by a 3'-terminal psoralen on a third strand directed to the mutant base pair. Nucleic Acids Research. 31: 4682-8. PMID 12907707 DOI: 10.1093/Nar/Gkg658  0.766
2003 Amosova O, Broitman SL, Fresco JR. Repairing the Sickle Cell mutation. II. Effect of psoralen linker length on specificity of formation and yield of third strand-directed photoproducts with the mutant target sequence. Nucleic Acids Research. 31: 4673-81. PMID 12907706 DOI: 10.1093/Nar/Gkg659  0.772
2003 Brooks DJ, Fresco JR. Greater GNN pattern bias in sequence elements encoding conserved residues of ancient proteins may be an indicator of amino acid composition of early proteins. Gene. 303: 177-85. PMID 12559579 DOI: 10.1016/S0378-1119(02)01176-9  0.348
2002 Brooks DJ, Fresco JR, Lesk AM, Singh M. Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code. Molecular Biology and Evolution. 19: 1645-55. PMID 12270892 DOI: 10.1093/Oxfordjournals.Molbev.A003988  0.301
2002 Brooks DJ, Fresco JR. Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor. Molecular & Cellular Proteomics : McP. 1: 125-31. PMID 12096130 DOI: 10.1074/Mcp.M100001-Mcp200  0.305
2001 Fabregat I, Koch KS, Aoki T, Atkinson AE, Dang H, Amosova O, Fresco JR, Schildkraut CL, Leffert HL. Functional pleiotropy of an intramolecular triplex-forming fragment from the 3'-UTR of the rat Pigr gene. Physiological Genomics. 5: 53-65. PMID 11242589 DOI: 10.1152/Physiolgenomics.2001.5.2.53  0.735
1999 Amosova OA, Fresco JR. A search for base analogs to enhance third-strand binding to 'inverted' target base pairs of triplexes in the pyrimidine/parallel motif. Nucleic Acids Research. 27: 4632-5. PMID 10556320 DOI: 10.1093/Nar/27.23.4632  0.759
1999 Broitman S, Amosova O, Dolinnaya NG, Fresco JR. Repairing the sickle cell mutation. I. Specific covalent binding of a photoreactive third strand to the mutated base pair. The Journal of Biological Chemistry. 274: 21763-8. PMID 10419490 DOI: 10.1074/Jbc.274.31.21763  0.783
1999 Johnson MD, Fresco JR. Third-strand in situ hybridization (TISH) to non-denatured metaphase spreads and interphase nuclei. Chromosoma. 108: 181-9. PMID 10398847 DOI: 10.1007/S004120050367  0.335
1999 Suen W, Spiro TG, Sowers LC, Fresco JR. Identification by UV resonance Raman spectroscopy of an imino tautomer of 5-hydroxy-2'-deoxycytidine, a powerful base analog transition mutagen with a much higher unfavored tautomer frequency than that of the natural residue 2'-deoxycytidine. Proceedings of the National Academy of Sciences of the United States of America. 96: 4500-5. PMID 10200291 DOI: 10.1073/Pnas.96.8.4500  0.314
1998 Fresco JR. From DNA Melting Profiles to tRNA Crystals and RNA Chaperones: How the Secondary and Tertiary Structures of Ribonucleic Acids Were Discovered—A Personal Recollection Cold Spring Harbor Monograph Archive. 35: 1-35. DOI: 10.1101/087969509.35.1  0.327
1997 Amosova O, George J, Fresco JR. Effect of the 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole residue on the stability of DNA duplexes and triplexes. Nucleic Acids Research. 25: 1930-4. PMID 9115359 DOI: 10.1093/Nar/25.10.1930  0.754
1997 Dolinnaya NG, Ulku A, Fresco JR. Parallel-stranded linear homoduplexes of d(A+-G)n > 10 and d(A-G)n > 10 manifesting the contrasting ionic strength sensitivities of poly(A+.A+) and DNA. Nucleic Acids Research. 25: 1100-7. PMID 9092616 DOI: 10.1093/Nar/25.6.1100  0.44
1996 Mukerji I, Shiber MC, Fresco JR, Spiro TG. A UV resonance Raman study of hairpin dimer helices of d(A-G)10 at neutral pH containing intercalated dA residues and alternating dG tetrads. Nucleic Acids Research. 24: 5013-20. PMID 9016674 DOI: 10.1093/Nar/24.24.5013  0.379
1996 Shiber MC, Braswell EH, Klump H, Fresco JR. Duplex-tetraplex equilibrium between a hairpin and two interacting hairpins of d(A-G)10 at neutral pH. Nucleic Acids Research. 24: 5004-12. PMID 9016673 DOI: 10.1093/Nar/24.24.5004  0.368
1995 Lavelle L, Fresco JR. UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch. Nucleic Acids Research. 23: 2692-705. PMID 7651830 DOI: 10.1093/Nar/23.14.2692  0.686
1995 Mukerji I, Shiber MC, Spiro TG, Fresco JR. A UV resonance Raman study of d(A(+)-G)10, a single-stranded helix without stacked or paired bases. Biochemistry. 34: 14300-3. PMID 7578033 DOI: 10.1021/Bi00044A006  0.346
1995 Shiber MC, Lavelle L, Fossella JA, Fresco JR. Alpha-DNA, a single-stranded secondary structure stabilized by ionic and hydrogen bonds: d(A(+)-G)n. Biochemistry. 34: 14293-9. PMID 7578032 DOI: 10.1021/Bi00044A005  0.675
1993 Dolinnaya NG, Braswell EH, Fossella JA, Klump H, Fresco JR. Molecular and thermodynamic properties of d(A(+)-G)10, a single-stranded nucleic acid helix without paired or stacked bases. Biochemistry. 32: 10263-70. PMID 8399154 DOI: 10.1021/Bi00089A049  0.426
1993 Fossella JA, Kim YJ, Shih H, Richards EG, Fresco JR. Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif. Nucleic Acids Research. 21: 4511-5. PMID 8233785 DOI: 10.1093/Nar/21.19.4511  0.459
1992 Dolinnaya NG, Fresco JR. Single-stranded nucleic acid helical secondary structure stabilized by ionic bonds: d(A(+)-G)10. Proceedings of the National Academy of Sciences of the United States of America. 89: 9242-6. PMID 1409629 DOI: 10.1073/Pnas.89.19.9242  0.435
1988 Letai AG, Palladino MA, Fromm E, Rizzo V, Fresco JR. Specificity in formation of triple-stranded nucleic acid helical complexes: studies with agarose-linked polyribonucleotide affinity columns. Biochemistry. 27: 9108-12. PMID 3242616 DOI: 10.1021/Bi00426A007  0.452
1983 Ornstein RL, Fresco JR. Correlation of Tm and sequence of DNA duplexes with delta H computed by an improved empirical potential method. Biopolymers. 22: 1979-2000. PMID 6616016 DOI: 10.1002/Bip.360220811  0.39
1983 Ornstein RL, Fresco JR. Correlation of crystallographically determined and computationally predicted hydrogen-bonded pairing configurations of nucleic acid bases. Proceedings of the National Academy of Sciences of the United States of America. 80: 5171-5. PMID 6577415 DOI: 10.1073/Pnas.80.17.5171  0.331
1983 Ornstein RL, Fresco JR. Correlation of Tm, sequence, and delta H of complementary RNA helices and comparison with DNA helices. Biopolymers. 22: 2001-16. PMID 6193821 DOI: 10.1002/Bip.360220812  0.359
1982 Karpel RL, Miller NS, Fresco JR. Mechanistic studies of ribonucleic acid renaturation by a helix-destabilizing protein. Biochemistry. 21: 2102-8. PMID 6178431 DOI: 10.1021/Bi00538A019  0.34
1980 Topal MD, Fresco JR. Fluorescence of terbium ion-nucleic acid complexes: a sensitive specific probe for unpaired residues in nucleic acids. Biochemistry. 19: 5531-7. PMID 7459329 DOI: 10.1021/Bi00565A011  0.384
1976 Topal MD, Fresco JR. Base pairing and fidelity in codon-anticodon interaction. Nature. 263: 289-93. PMID 958483 DOI: 10.1038/263289A0  0.317
1976 Topal MD, Fresco JR. Complementary base pairing and the origin of substitution mutations. Nature. 263: 285-9. PMID 958482 DOI: 10.1038/263285A0  0.453
1975 Karpel RL, Miller NS, Lesk AM, Fresco JR. Stabilization of the native tertiary stucture of yeast tRNALeu3 by cationic metal complexes. Journal of Molecular Biology. 97: 519-32. PMID 1102713 DOI: 10.1016/S0022-2836(75)80056-8  0.32
1975 Lomant AJ, Fresco JR. Structural and energetic consequences of noncomplementary base oppositions in nucleic acid helices. Progress in Nucleic Acid Research and Molecular Biology. 15: 185-218. PMID 1094495 DOI: 10.1016/S0079-6603(08)60120-8  0.406
1974 Uhlenbeck OC, Chirikjian JG, Fresco JR. Oligonucleotide binding to the native and denatured conformers of yeast transfer RNA-3 Lea. Journal of Molecular Biology. 89: 495-504. PMID 4613864 DOI: 10.1016/0022-2836(74)90478-1  0.347
1973 Lomant AJ, Fresco JR. Polynucleotides. 13. Stoichiometric and thermodynamic studies of polynucleotide helices with non-complementary residues. Biopolymers. 12: 1889-903. PMID 4733714 DOI: 10.1002/Bip.1973.360120815  0.405
1973 Lomant AJ, Fresco JR. Polynucleotides. XIV. Photochemical evidence for an extrahelical, solvent-accessible environment of non-complementary residues in polynucleotide helices. Journal of Molecular Biology. 77: 345-54. PMID 4727069 DOI: 10.1016/0022-2836(73)90442-7  0.38
1973 Wong YP, Kearns DR, Shulman RG, Yamane T, Chang S, Chirikjian JG, Fresco JR. High resolution nuclear magnetic resonance study of base pairing in the native and denaturated conformers of transfer RNA Leu 3 . Journal of Molecular Biology. 74: 403-6. PMID 4571235 DOI: 10.1016/0022-2836(73)90380-X  0.32
1973 Webb PK, Fresco JR. Tritium exchange studies of transfer RNA in native and denaturated conformations. Journal of Molecular Biology. 74: 387-402. PMID 4571234 DOI: 10.1016/0022-2836(73)90379-3  0.361
1972 Lomant AJ, Fresco JR. Polynucleotides. X. Influences of polynucleotide conformation on susceptibility of pyrimidine residues to photochemical attack. Journal of Molecular Biology. 66: 49-64. PMID 5040368 DOI: 10.1016/S0022-2836(72)80005-6  0.332
1972 Lomant AJ, Fresco JR. Ultraviolet photochemistry as a probe of polyribonucleotide conformation. Progress in Nucleic Acid Research and Molecular Biology. 12: 1-27. PMID 4557057 DOI: 10.1016/S0079-6603(08)60657-1  0.328
1971 Kowalski S, Fresco JR. Preparation of highly labeled (32P)nucleic acids from yeasts; isolation of "denaturable" leucine acceptor transfer RNA. Science (New York, N.Y.). 172: 384-5. PMID 5550488 DOI: 10.1126/Science.172.3981.384  0.301
1967 Lindahl T, Adams A, Fresco JR. Isolation of "renaturable" transfer ribonucleic acids. The Journal of Biological Chemistry. 242: 3129-34. PMID 5338922  0.405
1967 Lindahl T, Adams A, Geroch M, Fresco JR. Selective recognition of the native conformation of transfer ribonucleic acids by enzymes. Proceedings of the National Academy of Sciences of the United States of America. 57: 178-85. PMID 5233167 DOI: 10.1073/Pnas.57.1.178  0.507
1967 Adams A, Lindahl T, Fresco JR. Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid. Proceedings of the National Academy of Sciences of the United States of America. 57: 1684-91. PMID 5231404 DOI: 10.1073/Pnas.57.6.1684  0.502
1967 Lindahl T, Fresco JR. [79] Preparation of highly purified sRNA from yeast Methods in Enzymology. 12: 601-607. DOI: 10.1016/S0076-6879(67)12091-0  0.453
1966 Lindahl T, Adams A, Fresco JR. Renaturation of transfer ribonucleic acids through site binding of magnesium. Proceedings of the National Academy of Sciences of the United States of America. 55: 941-8. PMID 5327073 DOI: 10.1073/Pnas.55.4.941  0.497
1966 Fresco JR, Adams A, Ascione R, Henley D, Lindahl T. Tertiary structure in transfer ribonucleic acids. Cold Spring Harbor Symposia On Quantitative Biology. 31: 527-37. PMID 5237202 DOI: 10.1101/Sqb.1966.031.01.068  0.487
1966 Henley DD, Lindahl T, Fresco JR. Hydrodynamic changes accompanying the thermal denaturation of transfer ribonucleic acid. Proceedings of the National Academy of Sciences of the United States of America. 55: 191-8. PMID 5220867 DOI: 10.1073/Pnas.55.1.191  0.475
1965 Lindahl T, Henley DD, Fresco JR. Molecular weight and molecular weight distribution of unfractionated yeast transfer ribonucleic acid. Journal of the American Chemical Society. 87: 4961-3. PMID 5844470 DOI: 10.1021/Ja00949A055  0.451
1963 Richards EG, Flessel CP, Fresco JR. Polynucleotides. VI. Molecular properties and conformation of polyribouridylic acid Biopolymers. 1: 431-446. DOI: 10.1002/Bip.360010504  0.304
1960 FRESCO JR, BENDICH A. The metabolic stability of rat liver deoxyribonucleic acid: a turnover study. The Journal of Biological Chemistry. 235: 1124-8. PMID 13824903  0.412
1958 Bendich A, Pahl HB, Korngold GC, Rosenkranz HS, Fresco JR. Fractionation of deoxyribonucleic acids on columns of anion exchangers; methodology Journal of the American Chemical Society. 80: 3949-3956. DOI: 10.1021/Ja01548A038  0.43
1955 Bendich A, Fresco JR, Rosenkranz HS, Beiser SM. Fractionation of deoxyribonucleic acid (DNA) by ion exchange [5] Journal of the American Chemical Society. 77: 3671-3673.  0.472
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