Joseph A. Loo - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 
Area:
Chemistry and Biochemistry, Biochemistry, Molecular Biology, Biological Chemistry
Website:
http://faculty.chemistry.ucla.edu/institution/personnel?personnel_id=45543

196 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Urzica E, Casero D, Yamasaki H, Hsieh SI, Adler LN, Karpowicz SJ, Blaby-Haas C, Clarke SG, Loo JA, Pellegrini M, Merchant SS. CORRECTION: Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. The Plant Cell. PMID 30952825 DOI: 10.1105/tpc.19.00217  0.48
2019 James KL, Kung JW, Crable BR, Mouttaki H, Sieber JR, Nguyen HH, Yang Y, Xie Y, Erde J, Wofford NQ, Karr EA, Loo JA, Ogorzalek Loo RR, Gunsalus RP, McInerney MJ. Syntrophus aciditrophicus uses the same enzymes in a reversible manner to degrade and synthesize aromatic and alicyclic acids. Environmental Microbiology. PMID 30895699 DOI: 10.1111/1462-2920.14601  0.88
2019 Malik R, Meng H, Wongkongkathep P, Corrales CI, Sepanj N, Atlasi RS, Klärner FG, Schrader T, Spencer MJ, Loo JA, Wiedau M, Bitan G. The molecular tweezer CLR01 inhibits aberrant superoxide dismutase 1 (SOD1) self-assembly in vitro and in the G93A-SOD1 mouse model of ALS. The Journal of Biological Chemistry. PMID 30602569 DOI: 10.1074/jbc.RA118.005940  1
2018 Simonian M, Shirasaki D, Lee VS, Bervini D, Grace M, Loo RRO, Loo JA, Molloy MP, Stoodley MA. Proteomics identification of radiation-induced changes of membrane proteins in the rat model of arteriovenous malformation in pursuit of targets for brain AVM molecular therapy. Clinical Proteomics. 15: 43. PMID 30602943 DOI: 10.1186/s12014-018-9217-x  1
2018 Lippens JL, Egea PF, Spahr C, Vaish A, Keener JE, Marty MT, Loo JA, Campuzano IDG. Rapid LC-MS Method for Accurate Molecular Weight Determination of Membrane and Hydrophobic Proteins. Analytical Chemistry. PMID 30335969 DOI: 10.1021/acs.analchem.8b03843  0.44
2018 Nshanian M, Lantz C, Wongkongkathep P, Schrader T, Klärner FG, Blümke A, Despres C, Ehrmann M, Smet-Nocca C, Bitan G, Loo JA. Native Top-Down Mass Spectrometry and Ion Mobility Spectrometry of the Interaction of Tau Protein with a Molecular Tweezer Assembly Modulator. Journal of the American Society For Mass Spectrometry. PMID 30062477 DOI: 10.1007/s13361-018-2027-6  1
2018 Cleary SP, Li H, Bagal D, Loo JA, Campuzano IDG, Prell JS. Extracting Charge and Mass Information from Highly Congested Mass Spectra Using Fourier-Domain Harmonics. Journal of the American Society For Mass Spectrometry. PMID 30003534 DOI: 10.1007/s13361-018-2018-7  0.44
2018 Wongkongkathep P, Han JY, Choi TS, Yin S, Kim HI, Loo JA. Native Top-Down Mass Spectrometry and Ion Mobility MS for Characterizing the Cobalt and Manganese Metal Binding of α-Synuclein Protein. Journal of the American Society For Mass Spectrometry. PMID 29951842 DOI: 10.1007/s13361-018-2002-2  1
2018 McConnell SA, Amer BR, Muroski J, Fu J, Chang C, Loo RRO, Loo J, Osipiuk J, Ton-That H, Clubb RT. Protein Labeling via a Specific Lysine-Isopeptide Bond using the Pilin Polymerizing Sortase from Corynebacterium diphtheriae. Journal of the American Chemical Society. PMID 29927249 DOI: 10.1021/jacs.8b05200  1
2018 Chang C, Amer BR, Osipiuk J, McConnell SA, Huang IH, Hsieh V, Fu J, Nguyen HH, Muroski J, Flores E, Ogorzalek Loo RR, Loo JA, Putkey JA, Joachimiak A, Das A, et al. In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking. Proceedings of the National Academy of Sciences of the United States of America. PMID 29844180 DOI: 10.1073/pnas.1800954115  0.72
2018 Nshanian M, Lakshmanan R, Chen H, Ogorzalek Loo RR, Loo JA. Enhancing Sensitivity of Liquid Chromatography-Mass Spectrometry of Peptides and Proteins Using Supercharging Agents. International Journal of Mass Spectrometry. 427: 157-164. PMID 29750076 DOI: 10.1016/j.ijms.2017.12.006  1
2018 Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, ... ... Loo JA, et al. How many human proteoforms are there? Nature Chemical Biology. 14: 206-214. PMID 29443976 DOI: 10.1038/nchembio.2576  0.72
2018 Lermyte F, Valkenborg D, Loo JA, Sobott F. Radical solutions: Principles and application of electron-based dissociation in mass spectrometry-based analysis of protein structure. Mass Spectrometry Reviews. PMID 29425406 DOI: 10.1002/mas.21560  1
2018 Choi TS, Lee J, Han JY, Jung BC, Wongkongkathep P, Loo JA, Lee MJ, Kim HI. Supramolecular Modulation of Structural Polymorphism in Pathogenic α-Synuclein Fibrils Using Cu(II) Coordination. Angewandte Chemie (International Ed. in English). PMID 29368447 DOI: 10.1002/anie.201712286  1
2018 Polasky DA, Lermyte F, Nshanian M, Sobott F, Andrews PC, Loo J, Ruotolo BT. Fixed-charge Trimethyl Pyrilium Modification Enables Enhanced Top-down Mass Spectrometry Sequencing of Intact Protein Complexes. Analytical Chemistry. PMID 29360341 DOI: 10.1021/acs.analchem.7b04806  1
2018 Li H, Nguyen HH, Ogorzalek Loo RR, Campuzano IDG, Loo JA. An integrated native mass spectrometry and top-down proteomics method that connects sequence to structure and function of macromolecular complexes. Nature Chemistry. 10: 139-148. PMID 29359744 DOI: 10.1038/nchem.2908  0.72
2017 Campuzano IDG, Netirojjanakul C, Nshanian M, Lippens JL, Kilgour DPA, Van Orden S, Loo JA. Native-MS Analysis of Monoclonal Antibody Conjugates by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Analytical Chemistry. PMID 29193956 DOI: 10.1021/acs.analchem.7b03021  1
2017 Susa AC, Lippens JL, Xia Z, Loo JA, Campuzano IDG, Williams ER. Submicrometer Emitter ESI Tips for Native Mass Spectrometry of Membrane Proteins in Ionic and Nonionic Detergents. Journal of the American Society For Mass Spectrometry. PMID 29027132 DOI: 10.1007/s13361-017-1793-x  0.44
2017 Lippens JL, Nshanian M, Spahr C, Egea PF, Loo JA, Campuzano IDG. Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry as a Platform for Characterizing Multimeric Membrane Protein Complexes. Journal of the American Society For Mass Spectrometry. PMID 28971338 DOI: 10.1007/s13361-017-1799-4  1
2017 Halford J, Shen S, Itamura K, Levine J, Chong AC, Czerwieniec G, Glenn TC, Hovda DA, Vespa P, Bullock R, Dietrich WD, Mondello S, Loo JA, Wanner IB. New astroglial injury-defined biomarkers for neurotrauma assessment. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 271678X17724681. PMID 28816095 DOI: 10.1177/0271678X17724681  0.48
2017 Zhang J, Loo RRO, Loo JA. Structural Characterization of a Thrombin-Aptamer Complex by High Resolution Native Top-Down Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 28755259 DOI: 10.1007/s13361-017-1751-7  1
2017 Takemori N, Takemori A, Wongkongkathep P, Nshanian M, Loo RRO, Lermyte F, Loo JA. Top-down/bottom-up mass spectrometry workflow using dissolvable polyacrylamide gels. Analytical Chemistry. PMID 28723075 DOI: 10.1021/acs.analchem.7b00357  1
2017 Simonian M, Loo RRO, Rannulu N, Loo JA, Molloy MP, Stoodley MA. Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies. Clinical Proteomics. 14: 17. PMID 28522939 DOI: 10.1186/s12014-017-9151-3  1
2017 Vöpel T, Bravo-Rodriguez K, Mittal S, Vachharajani S, Gnutt D, Sharma A, Steinhof A, Fatoba O, Ellrichmann G, Nshanian M, Heid C, Loo JA, Klärner FG, Schrader T, Bitan G, et al. Inhibition of Huntingtin Exon-1 Aggregation by the Molecular Tweezer CLR01. Journal of the American Chemical Society. PMID 28406616 DOI: 10.1021/jacs.6b11039  1
2017 Zimmer RK, Ferrier GA, Kim SJ, Ogorzalek Loo RR, Zimmer CA, Loo JA. Keystone predation and molecules of keystone significance. Ecology. PMID 28376248 DOI: 10.1002/ecy.1849  0.72
2017 Li H, Sheng Y, McGee WM, Cammarata M, Holden DD, Loo JA. Structural Characterization of Native Proteins and Protein Complexes by Electron Ionization Dissociation-Mass Spectrometry. Analytical Chemistry. PMID 28192979 DOI: 10.1021/acs.analchem.6b02377  0.44
2017 Erde J, Loo RR, Loo JA. Improving Proteome Coverage and Sample Recovery with Enhanced FASP (eFASP) for Quantitative Proteomic Experiments. Methods in Molecular Biology (Clifton, N.J.). 1550: 11-18. PMID 28188519 DOI: 10.1007/978-1-4939-6747-6_2  0.88
2016 Campuzano ID, Li H, Bagal D, Lippens JL, Svitel J, Kurzeja RJ, Xu H, Schnier PD, Loo JA. Native MS Analysis of Bacteriorhodopsin and an Empty Nanodisc by Orthogonal Acceleration Time-of-Flight, Orbitrap and Ion Cyclotron Resonance. Analytical Chemistry. 88: 12427-12436. PMID 28193065 DOI: 10.1021/acs.analchem.6b03762  0.44
2016 Zimmer RK, Ferrier GA, Kim SJ, Kaddis CS, Zimmer CA, Loo JA. A multifunctional chemical cue drives opposing demographic processes and structures ecological communities. Ecology. 97: 2232-2239. PMID 27859065 DOI: 10.1002/ecy.1455  1
2016 James KL, Ríos-Hernández LA, Wofford NQ, Mouttaki H, Sieber JR, Sheik CS, Nguyen HH, Yang Y, Xie Y, Erde J, Rohlin L, Karr EA, Loo JA, Ogorzalek Loo RR, Hurst GB, et al. Pyrophosphate-Dependent ATP Formation from Acetyl Coenzyme A in Syntrophus aciditrophicus, a New Twist on ATP Formation. Mbio. 7. PMID 27531911 DOI: 10.1128/mBio.01208-16  1
2016 Ferrier GA, Kim SJ, Kaddis CS, Loo JA, Ann Zimmer C, Zimmer RK. MULTIFUNCin: A Multifunctional Protein Cue Induces Habitat Selection by, and Predation on, Barnacles. Integrative and Comparative Biology. PMID 27371385 DOI: 10.1093/icb/icw076  1
2016 Loo RR, Loo JA. Salt Bridge Rearrangement (SaBRe) Explains the Dissociation Behavior of Noncovalent Complexes. Journal of the American Society For Mass Spectrometry. PMID 27052739 DOI: 10.1007/s13361-016-1375-3  0.88
2016 Lohnes K, Quebbemann N, Liu K, Kobzeff F, Loo JA, Ogorzalek Loo RR. Combining High-throughput MALDI-TOF Mass Spectrometry and Isoelectric Focusing Gel Electrophoresis for Virtual 2D Gel-based Proteomics. Methods (San Diego, Calif.). PMID 26826592 DOI: 10.1016/j.ymeth.2016.01.013  1
2015 Sohn CH, Yin S, Peng I, Loo JA, Beauchamp JL. Investigation of the Mechanism of Electron Capture and Electron Transfer Dissociation of Peptides with a Covalently Attached Free Radical Hydrogen Atom Scavenger. International Journal of Mass Spectrometry. 390: 49-55. PMID 27275130 DOI: 10.1016/j.ijms.2015.07.007  1
2015 Cheng S, Wang J, Cai Y, Loo JA, Chen H. Enhancing Performance of Liquid Sample Desorption Electrospray Ionization Mass Spectrometry Using Trap and Capillary Columns. International Journal of Mass Spectrometry. 392: 73-79. PMID 27239159 DOI: 10.1016/j.ijms.2015.09.010  0.44
2015 Decker CG, Wang Y, Paluck SJ, Shen L, Loo JA, Levine AJ, Miller LS, Maynard HD. Fibroblast growth factor 2 dimer with superagonist in vitro activity improves granulation tissue formation during wound healing. Biomaterials. 81: 157-168. PMID 26731578 DOI: 10.1016/j.biomaterials.2015.12.003  0.36
2015 Levine J, Kwon E, Paez P, Yan W, Czerwieniec G, Loo JA, Sofroniew MV, Wanner IB. Traumatically injured astrocytes release a proteomic signature modulated by STAT3-dependent cell survival. Glia. PMID 26683444 DOI: 10.1002/glia.22953  0.48
2015 Wongkongkathep P, Li H, Zhang X, Loo RR, Julian RR, Loo JA. Enhancing Protein Disulfide Bond Cleavage by UV Excitation and Electron Capture Dissociation for Top-Down Mass Spectrometry. International Journal of Mass Spectrometry. 390: 137-145. PMID 26644781 DOI: 10.1016/j.ijms.2015.07.008  1
2015 Jiang J, Chan H, Cash DD, Miracco EJ, Ogorzalek Loo RR, Upton HE, Cascio D, O'Brien Johnson R, Collins K, Loo JA, Zhou ZH, Feigon J. Structure of Tetrahymena telomerase reveals previously unknown subunits, functions, and interactions. Science (New York, N.Y.). 350: aab4070. PMID 26472759 DOI: 10.1126/science.aab4070  1
2015 Loo JA. Focus on Mass Spectrometry-Based Strategies for Neuroproteomics and Peptidomics, Honoring Dr. Lingjun Li, Recipient of the 2014 ASMS Biemann Medal. Journal of the American Society For Mass Spectrometry. PMID 26438127 DOI: 10.1007/s13361-015-1281-0  1
2015 Cai Y, Zheng Q, Liu Y, Helmy R, Loo JA, Chen H. Integration of electrochemistry with ultra-performance liquid chromatography/mass spectrometry. European Journal of Mass Spectrometry (Chichester, England). 21: 341-51. PMID 26307715 DOI: 10.1255/ejms.1318  0.44
2015 Zhang J, Reza Malmirchegini G, Clubb RT, Loo JA. Native top-down mass spectrometry for the structural characterization of human hemoglobin. European Journal of Mass Spectrometry (Chichester, England). 21: 221-31. PMID 26307702 DOI: 10.1255/ejms.1340  1
2015 Chantaravisoot N, Wongkongkathep P, Loo JA, Mischel PS, Tamanoi F. Significance of filamin A in mTORC2 function in glioblastoma. Molecular Cancer. 14: 127. PMID 26134617 DOI: 10.1186/s12943-015-0396-z  1
2015 AhYoung AP, Jiang J, Zhang J, Khoi Dang X, Loo JA, Zhou ZH, Egea PF. Conserved SMP domains of the ERMES complex bind phospholipids and mediate tether assembly. Proceedings of the National Academy of Sciences of the United States of America. 112: E3179-88. PMID 26056272 DOI: 10.1073/pnas.1422363112  1
2015 Zhang J, Ogorzalek Loo RR, Loo JA. Increasing Fragmentation of Disulfide-Bonded Proteins for Top-Down Mass Spectrometry by Supercharging. International Journal of Mass Spectrometry. 377: 546-556. PMID 26028988 DOI: 10.1016/j.ijms.2014.07.047  1
2015 Leon DR, Ytterberg AJ, Boontheung P, Kim U, Loo JA, Gunsalus RP, Ogorzalek Loo RR. Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1. Frontiers in Microbiology. 6: 149. PMID 25798134 DOI: 10.3389/fmicb.2015.00149  0.72
2015 Loo JA, Neff JL. Outstanding JASMS manuscript reviewers, 2013-2014. Journal of the American Society For Mass Spectrometry. 26: 699-700. PMID 25791215 DOI: 10.1007/s13361-015-1106-1  1
2015 Hong-Hermesdorf A, Miethke M, Gallaher SD, Kropat J, Dodani SC, Chan J, Barupala D, Domaille DW, Shirasaki DI, Loo JA, Weber PK, Pett-Ridge J, Stemmler TL, Chang CJ, Merchant SS. Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. Nature Chemical Biology. 11: 235. PMID 25689337 DOI: 10.1038/nchembio0315-235c  0.32
2015 Allan CM, Awad AM, Johnson JS, Shirasaki DI, Wang C, Blaby-Haas CE, Merchant SS, Loo JA, Clarke CF. Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 290: 7517-34. PMID 25631044 DOI: 10.1074/jbc.M114.633131  0.32
2015 Chantaravisoot N, Wongkongkathep P, Loo JA, Mischel PS, Tamanoi F. Significance of filamin A in mTORC2 function in glioblastoma Molecular Cancer. 14. DOI: 10.1186/s12943-015-0396-z  1
2015 Cheng S, Wang J, Cai Y, Loo JA, Chen H. Enhancing performance of liquid sample desorption electrospray ionization mass spectrometry using trap and capillary columns International Journal of Mass Spectrometry. 392: 73-79. DOI: 10.1016/j.ijms.2015.09.010  1
2015 Sohn CH, Yin S, Peng I, Loo JA, Beauchamp JL. Investigation of the mechanism of electron capture and electron transfer dissociation of peptides with a covalently attached free radical hydrogen atom scavenger International Journal of Mass Spectrometry. 390: 49-55. DOI: 10.1016/j.ijms.2015.07.007  1
2014 Dzialo MC, Travaglini KJ, Shen S, Loo JA, Clarke SG. A new type of protein lysine methyltransferase trimethylates Lys-79 of elongation factor 1A. Biochemical and Biophysical Research Communications. 455: 382-9. PMID 25446118 DOI: 10.1016/j.bbrc.2014.11.022  0.48
2014 Zhang X, Li H, Moore B, Wongkongkathep P, Ogorzalek Loo RR, Loo JA, Julian RR. Radical-directed dissociation of peptides and proteins by infrared multiphoton dissociation and sustained off-resonance irradiation collision-induced dissociation with Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 28: 2729-34. PMID 25380495 DOI: 10.1002/rcm.7068  1
2014 Hong-Hermesdorf A, Miethke M, Gallaher SD, Kropat J, Dodani SC, Chan J, Barupala D, Domaille DW, Shirasaki DI, Loo JA, Weber PK, Pett-Ridge J, Stemmler TL, Chang CJ, Merchant SS. Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. Nature Chemical Biology. 10: 1034-42. PMID 25344811 DOI: 10.1038/nchembio.1662  0.48
2014 Dzialo MC, Travaglini KJ, Shen S, Roy K, Chanfreau GF, Loo JA, Clarke SG. Translational roles of elongation factor 2 protein lysine methylation. The Journal of Biological Chemistry. 289: 30511-24. PMID 25231983 DOI: 10.1074/jbc.M114.605527  0.48
2014 Ogorzalek Loo RR, Lakshmanan R, Loo JA. What protein charging (and supercharging) reveal about the mechanism of electrospray ionization. Journal of the American Society For Mass Spectrometry. 25: 1675-93. PMID 25135609 DOI: 10.1007/s13361-014-0965-1  1
2014 Buehler DC, Marsden MD, Shen S, Toso DB, Wu X, Loo JA, Zhou ZH, Kickhoefer VA, Wender PA, Zack JA, Rome LH. Bioengineered vaults: self-assembling protein shell-lipophilic core nanoparticles for drug delivery. Acs Nano. 8: 7723-32. PMID 25061969 DOI: 10.1021/nn5002694  1
2014 Ferguson CN, Fowler JW, Waxer JF, Gatti RA, Loo JA. Mass spectrometry-based tissue imaging of small molecules. Advances in Experimental Medicine and Biology. 806: 283-99. PMID 24952187 DOI: 10.1007/978-3-319-06068-2_12  1
2014 Li H, Wongkongkathep P, Van Orden SL, Ogorzalek Loo RR, Loo JA. Revealing ligand binding sites and quantifying subunit variants of noncovalent protein complexes in a single native top-down FTICR MS experiment. Journal of the American Society For Mass Spectrometry. 25: 2060-8. PMID 24912433 DOI: 10.1007/s13361-014-0928-6  1
2014 Shen S, Loo RR, Wanner IB, Loo JA. Addressing the needs of traumatic brain injury with clinical proteomics. Clinical Proteomics. 11: 11. PMID 24678615 DOI: 10.1186/1559-0275-11-11  1
2014 Acharya S, Safaie BM, Wongkongkathep P, Ivanova MI, Attar A, Klärner FG, Schrader T, Loo JA, Bitan G, Lapidus LJ. Molecular basis for preventing α-synuclein aggregation by a molecular tweezer. The Journal of Biological Chemistry. 289: 10727-37. PMID 24567327 DOI: 10.1074/jbc.M113.524520  1
2014 Erde J, Loo RR, Loo JA. Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments. Journal of Proteome Research. 13: 1885-95. PMID 24552128 DOI: 10.1021/pr4010019  1
2014 Lakshmanan R, Wolff JJ, Alvarado R, Loo JA. Top-down protein identification of proteasome proteins with nanoLC-FT-ICR-MS employing data-independent fragmentation methods. Proteomics. 14: 1271-82. PMID 24478249 DOI: 10.1002/pmic.201300339  1
2014 Kumar Y, Vadivel K, Schmidt AE, Ogueli GI, Ponnuraj SM, Rannulu N, Loo JA, Bajaj MS, Bajaj SP. Decoy plasminogen receptor containing a selective Kunitz-inhibitory domain. Biochemistry. 53: 505-17. PMID 24383758 DOI: 10.1021/bi401584b  1
2014 Li H, Wolff JJ, Van Orden SL, Loo JA. Native top-down electrospray ionization-mass spectrometry of 158 kDa protein complex by high-resolution Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 86: 317-20. PMID 24313806 DOI: 10.1021/ac4033214  1
2014 Loo JA, Neff JL. Outstanding JASMS manuscript reviewers, 2012-2013 Journal of the American Society For Mass Spectrometry. 25: 905. DOI: 10.1007/s13361-014-0870-7  1
2013 Shen-Miller J, Lindner P, Xie Y, Villa S, Wooding K, Clarke SG, Loo RR, Loo JA. Thermal-stable proteins of fruit of long-living Sacred Lotus Nelumbo nucifera Gaertn var. China Antique. Tropical Plant Biology. 6. PMID 24363819 DOI: 10.1007/s12042-013-9124-2  1
2013 A Loo J, A Benchaar S, Zhang J. Integrating Native Mass Spectrometry and Top-Down MS for Defining Protein Interactions Important in Biology and Medicine. Mass Spectrometry (Tokyo, Japan). 2: S0013. PMID 24349932 DOI: 10.5702/massspectrometry.S0013  0.32
2013 Liu P, Zhang J, Ferguson CN, Chen H, Loo JA. Measuring protein-ligand interactions using liquid sample desorption electrospray ionization mass spectrometry. Analytical Chemistry. 85: 11966-72. PMID 24237005 DOI: 10.1021/ac402906d  1
2013 Loo RR, Loo JA. Protein complexes: breaking up is hard to do well. Structure (London, England : 1993). 21: 1265-6. PMID 23931137 DOI: 10.1016/j.str.2013.07.013  1
2013 Chen CK, Benchaar SA, Phan M, Grintsevich EE, Loo RR, Loo JA, Reisler E. Cofilin-induced changes in F-actin detected via cross-linking with benzophenone-4-maleimide. Biochemistry. 52: 5503-9. PMID 23862734 DOI: 10.1021/bi400715z  1
2013 Malasarn D, Kropat J, Hsieh SI, Finazzi G, Casero D, Loo JA, Pellegrini M, Wollman FA, Merchant SS. Zinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamydomonas reinhardtii. The Journal of Biological Chemistry. 288: 10672-83. PMID 23439652 DOI: 10.1074/jbc.M113.455105  1
2013 Loo JA, Neff JL. Outstanding JASMS manuscript reviewers, 2011-2012. Journal of the American Society For Mass Spectrometry. 24: 315. PMID 23423794 DOI: 10.1007/s13361-013-0584-2  1
2013 Nguyen TH, Kim SH, Decker CG, Wong DY, Loo JA, Maynard HD. A heparin-mimicking polymer conjugate stabilizes basic fibroblast growth factor. Nature Chemistry. 5: 221-7. PMID 23422564 DOI: 10.1038/nchem.1573  1
2013 Ngounou Wetie AG, Sokolowska I, Woods AG, Roy U, Loo JA, Darie CC. Investigation of stable and transient protein-protein interactions: Past, present, and future. Proteomics. 13: 538-57. PMID 23193082 DOI: 10.1002/pmic.201200328  1
2013 Spirig T, Malmirchegini GR, Zhang J, Robson SA, Sjodt M, Liu M, Krishna Kumar K, Dickson CF, Gell DA, Lei B, Loo JA, Clubb RT. Staphylococcus aureus uses a novel multidomain receptor to break apart human hemoglobin and steal its heme. The Journal of Biological Chemistry. 288: 1065-78. PMID 23132864 DOI: 10.1074/jbc.M112.419119  1
2013 Hsieh SI, Castruita M, Malasarn D, Urzica E, Erde J, Page MD, Yamasaki H, Casero D, Pellegrini M, Merchant SS, Loo JA. The proteome of copper, iron, zinc, and manganese micronutrient deficiency in Chlamydomonas reinhardtii. Molecular & Cellular Proteomics : McP. 12: 65-86. PMID 23065468 DOI: 10.1074/mcp.M112.021840  1
2012 Liu Y, Miao Z, Lakshmanan R, Ogorzalek Loo RR, Loo JA, Chen H. Signal and Charge Enhancement for Protein Analysis by Liquid Chromatography-Mass Spectrometry with Desorption Electrospray Ionization. International Journal of Mass Spectrometry. 325: 161-166. PMID 25878557 DOI: 10.1016/j.ijms.2012.06.006  1
2012 Urzica EI, Casero D, Yamasaki H, Hsieh SI, Adler LN, Karpowicz SJ, Blaby-Haas CE, Clarke SG, Loo JA, Pellegrini M, Merchant SS. Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. The Plant Cell. 24: 3921-48. PMID 23043051 DOI: 10.1105/tpc.112.102491  1
2012 Zhu W, Phan QT, Boontheung P, Solis NV, Loo JA, Filler SG. EGFR and HER2 receptor kinase signaling mediate epithelial cell invasion by Candida albicans during oropharyngeal infection. Proceedings of the National Academy of Sciences of the United States of America. 109: 14194-9. PMID 22891338 DOI: 10.1073/pnas.1117676109  1
2012 Shirasaki DI, Greiner ER, Al-Ramahi I, Gray M, Boontheung P, Geschwind DH, Botas J, Coppola G, Horvath S, Loo JA, Yang XW. Network organization of the huntingtin proteomic interactome in mammalian brain. Neuron. 75: 41-57. PMID 22794259 DOI: 10.1016/j.neuron.2012.05.024  1
2012 Page MD, Allen MD, Kropat J, Urzica EI, Karpowicz SJ, Hsieh SI, Loo JA, Merchant SS. Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii. The Plant Cell. 24: 2649-65. PMID 22685165 DOI: 10.1105/tpc.112.098962  1
2012 Rohlin L, Leon DR, Kim U, Loo JA, Ogorzalek Loo RR, Gunsalus RP. Identification of the major expressed S-layer and cell surface-layer-related proteins in the model methanogenic archaea: Methanosarcina barkeri Fusaro and Methanosarcina acetivorans C2A. Archaea (Vancouver, B.C.). 2012: 873589. PMID 22666082 DOI: 10.1155/2012/873589  1
2012 Halgand F, Zabrouskov V, Bassilian S, Souda P, Loo JA, Faull KF, Wong DT, Whitelegge JP. Defining intact protein primary structures from saliva: a step toward the human proteome project. Analytical Chemistry. 84: 4383-95. PMID 22509742 DOI: 10.1021/ac203337s  1
2012 Prabhudesai S, Sinha S, Attar A, Kotagiri A, Fitzmaurice AG, Lakshmanan R, Lakshmanan R, Ivanova MI, Loo JA, Klärner FG, Schrader T, Stahl M, Bitan G, Bronstein JM. A novel "molecular tweezer" inhibitor of α-synuclein neurotoxicity in vitro and in vivo. Neurotherapeutics : the Journal of the American Society For Experimental Neurotherapeutics. 9: 464-76. PMID 22373667 DOI: 10.1007/s13311-012-0105-1  1
2012 Sohn CH, Agnew HD, Lee JE, Sweredoski MJ, Graham RL, Smith GT, Hess S, Czerwieniec G, Loo JA, Heath JR, Deshaies RJ, Beauchamp JL. Designer reagents for mass spectrometry-based proteomics: clickable cross-linkers for elucidation of protein structures and interactions. Analytical Chemistry. 84: 2662-9. PMID 22339618 DOI: 10.1021/ac202637n  1
2012 Sohn CH, Lee JE, Sweredoski MJ, Graham RL, Smith GT, Hess S, Czerwieniec G, Loo JA, Deshaies RJ, Beauchamp JL. Click chemistry facilitates formation of reporter ions and simplified synthesis of amine-reactive multiplexed isobaric tags for protein quantification. Journal of the American Chemical Society. 134: 2672-80. PMID 22225568 DOI: 10.1021/ja2099003  1
2012 Claypool SM, Oktay Y, Boontheung P, Loo JA, Koehler CM. Cardiolipin defines the interactome of the major ADP/ATP carrier protein of the mitochondrial inner membrane Journal of Cell Biology. 197: 1029. DOI: 10.1083/jcb.2008011521977c  1
2012 Ytterberg AJ, Dunsmore J, Lomeli SH, Thevis M, Xie Y, Loo RRO, Loo JA. The Role of Mass Spectrometry for Peptide, Protein, and Proteome Characterization Electrospray and Maldi Mass Spectrometry: Fundamentals, Instrumentation, Practicalities, and Biological Applications: Second Edition. 683-721. DOI: 10.1002/9780470588901.ch18  1
2011 Zhang L, Pang E, Loo RR, Rao J, Go VL, Loo JA, Lu QY. Concomitant inhibition of HSP90, its mitochondrial localized homologue TRAP1 and HSP27 by green tea in pancreatic cancer HPAF-II cells. Proteomics. 11: 4638-47. PMID 22116673 DOI: 10.1002/pmic.201100242  1
2011 Schneider RE, Brown MT, Shiflett AM, Dyall SD, Hayes RD, Xie Y, Loo JA, Johnson PJ. The Trichomonas vaginalis hydrogenosome proteome is highly reduced relative to mitochondria, yet complex compared with mitosomes. International Journal For Parasitology. 41: 1421-34. PMID 22079833 DOI: 10.1016/j.ijpara.2011.10.001  1
2011 Loo JA, Neff JL. Outstanding reviewers of JASMS manuscripts, 2010-2011. Journal of the American Society For Mass Spectrometry. 22: 2101-2. PMID 21989704 DOI: 10.1007/s13361-011-0252-3  1
2011 Sinha S, Lopes DH, Du Z, Pang ES, Shanmugam A, Lomakin A, Talbiersky P, Tennstaedt A, McDaniel K, Bakshi R, Kuo PY, Ehrmann M, Benedek GB, Loo JA, Klärner FG, et al. Lysine-specific molecular tweezers are broad-spectrum inhibitors of assembly and toxicity of amyloid proteins. Journal of the American Chemical Society. 133: 16958-69. PMID 21916458 DOI: 10.1021/ja206279b  1
2011 Ferguson CN, Benchaar SA, Miao Z, Loo JA, Chen H. Direct ionization of large proteins and protein complexes by desorption electrospray ionization-mass spectrometry. Analytical Chemistry. 83: 6468-73. PMID 21774530 DOI: 10.1021/ac201390w  1
2011 Chiu ML, Ytterberg AJ, Ogorzalek Loo RR, Loo JA, Monbouquette HG. Characterization of morphine-glucose-6-phosphate dehydrogenase conjugates by mass spectrometry. Bioconjugate Chemistry. 22: 1595-604. PMID 21678975 DOI: 10.1021/bc2001352  1
2011 Yin S, Loo JA. Top-Down Mass Spectrometry of Supercharged Native Protein-Ligand Complexes. International Journal of Mass Spectrometry. 300: 118-122. PMID 21499519 DOI: 10.1016/j.ijms.2010.06.032  1
2011 Castruita M, Casero D, Karpowicz SJ, Kropat J, Vieler A, Hsieh SI, Yan W, Cokus S, Loo JA, Benning C, Pellegrini M, Merchant SS. Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps. The Plant Cell. 23: 1273-92. PMID 21498682 DOI: 10.1105/tpc.111.084400  1
2010 Nelson WC, Peng I, Lee GA, Loo JA, Garrell RL, Kim CJ. Incubated protein reduction and digestion on an electrowetting-on-dielectric digital microfluidic chip for MALDI-MS. Analytical Chemistry. 82: 9932-7. PMID 21058643 DOI: 10.1021/ac101833b  1
2010 Leuchter AF, Cook IA, Hamilton SP, Narr KL, Toga A, Hunter AM, Faull K, Whitelegge J, Andrews AM, Loo J, Way B, Nelson SF, Horvath S, Lebowitz BD. Biomarkers to predict antidepressant response. Current Psychiatry Reports. 12: 553-62. PMID 20963521 DOI: 10.1007/s11920-010-0160-4  1
2010 Arellano-Garcia ME, Li R, Liu X, Xie Y, Yan X, Loo JA, Hu S. Identification of tetranectin as a potential biomarker for metastatic oral cancer. International Journal of Molecular Sciences. 11: 3106-21. PMID 20957082 DOI: 10.3390/ijms11093106  1
2010 Hogan CJ, Ogorzalek Loo RR, Loo JA, de la Mora JF. Ion mobility-mass spectrometry of phosphorylase B ions generated with supercharging reagents but in charge-reducing buffer. Physical Chemistry Chemical Physics : Pccp. 12: 13476-83. PMID 20877871 DOI: 10.1039/c0cp01208d  1
2010 Loo JA, Yan W, Ramachandran P, Wong DT. Comparative human salivary and plasma proteomes. Journal of Dental Research. 89: 1016-23. PMID 20739693 DOI: 10.1177/0022034510380414  1
2010 Thevis M, Thomas A, Kohler M, Beuck S, Möller I, Schäfer M, Rodchenkov G, Yin S, Loo JA, Geyer H, Schänzer W. Mass spectrometry-based characterization of new drugs and methods of performance manipulation in doping control analysis. European Journal of Mass Spectrometry (Chichester, England). 16: 301-12. PMID 20530837 DOI: 10.1255/ejms.1047  1
2010 Senturia R, Faller M, Yin S, Loo JA, Cascio D, Sawaya MR, Hwang D, Clubb RT, Guo F. Structure of the dimerization domain of DiGeorge critical region 8. Protein Science : a Publication of the Protein Society. 19: 1354-65. PMID 20506313 DOI: 10.1002/pro.414  1
2010 Razani B, Zarnegar B, Ytterberg AJ, Shiba T, Dempsey PW, Ware CF, Loo JA, Cheng G. Negative feedback in noncanonical NF-kappaB signaling modulates NIK stability through IKKalpha-mediated phosphorylation. Science Signaling. 3: ra41. PMID 20501937 DOI: 10.1126/scisignal.2000778  1
2010 Loo JA. Focus in honor of Dr. Neil Kelleher, recipient of the 2009 Biemann Medal. Journal of the American Society For Mass Spectrometry. 21: i-iii. PMID 20381377 DOI: 10.1016/j.jasms.2010.03.004  1
2010 Sun Q, Yin S, Loo JA, Julian RR. Radical directed dissociation for facile identification of iodotyrosine residues using electrospray ionization mass spectrometry. Analytical Chemistry. 82: 3826-33. PMID 20356054 DOI: 10.1021/ac100256v  1
2010 Peng IX, Ogorzalek Loo RR, Margalith E, Little MW, Loo JA. Electrospray-assisted laser desorption ionization mass spectrometry (ELDI-MS) with an infrared laser for characterizing peptides and proteins. The Analyst. 135: 767-72. PMID 20349541 DOI: 10.1039/b923303b  1
2010 Grintsevich EE, Galkin VE, Orlova A, Ytterberg AJ, Mikati MM, Kudryashov DS, Loo JA, Egelman EH, Reisler E. Mapping of drebrin binding site on F-actin. Journal of Molecular Biology. 398: 542-54. PMID 20347847 DOI: 10.1016/j.jmb.2010.03.039  1
2010 Lakshmanan R, Loo JA, Drake T, Leblanc J, Ytterberg AJ, McArthur DL, Etchepare M, Vespa PM. Metabolic crisis after traumatic brain injury is associated with a novel microdialysis proteome. Neurocritical Care. 12: 324-36. PMID 20225002 DOI: 10.1007/s12028-010-9342-5  1
2010 Ryan CM, Souda P, Halgand F, Wong DT, Loo JA, Faull KF, Whitelegge JP. Confident assignment of intact mass tags to human salivary cystatins using top-down Fourier-transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 908-17. PMID 20189825 DOI: 10.1016/j.jasms.2010.01.025  1
2010 Halgand F, Zabrouskov V, Bassilian S, Souda P, Wong DT, Loo JA, Faull KF, Whitelegge JP. Micro-heterogeneity of human saliva Peptide P-C characterized by high-resolution top-down Fourier-transform mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 868-77. PMID 20185333 DOI: 10.1016/j.jasms.2010.01.026  1
2010 Yin S, Loo JA. Elucidating the site of protein-ATP binding by top-down mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 899-907. PMID 20163968 DOI: 10.1016/j.jasms.2010.01.002  1
2010 Chatterjee D, Ytterberg AJ, Son SU, Loo JA, Garrell RL. Integration of protein processing steps on a droplet microfluidics platform for MALDI-MS analysis. Analytical Chemistry. 82: 2095-101. PMID 20146460 DOI: 10.1021/ac9029373  1
2010 Kang X, Li N, Wang M, Boontheung P, Sioutas C, Harkema JR, Bramble LA, Nel AE, Loo JA. Adjuvant effects of ambient particulate matter monitored by proteomics of bronchoalveolar lavage fluid. Proteomics. 10: 520-31. PMID 20029843 DOI: 10.1002/pmic.200900573  1
2010 Lomeli SH, Peng IX, Yin S, Loo RR, Loo JA. New reagents for increasing ESI multiple charging of proteins and protein complexes. Journal of the American Society For Mass Spectrometry. 21: 127-31. PMID 19854660 DOI: 10.1016/j.jasms.2009.09.014  1
2010 Loo JA. Outstanding JASMS Manuscript Reviewers, 2009-2010 Journal of the American Society For Mass Spectrometry. 21: i-ii. DOI: 10.1016/j.jasms.2010.07.006  1
2009 Tao L, Kaddis CS, Loo RR, Grover GN, Loo JA, Maynard HD. Synthesis of Maleimide-End Functionalized Star Polymers and Multimeric Protein-Polymer Conjugates. Macromolecules. 42: 8028-8033. PMID 21544227 DOI: 10.1021/ma901540p  1
2009 Sondej M, Denny PA, Xie Y, Ramachandran P, Si Y, Takashima J, Shi W, Wong DT, Loo JA, Denny PC. Glycoprofiling of the Human Salivary Proteome. Clinical Proteomics. 5: 52-68. PMID 20161393 DOI: 10.1007/s12014-008-9021-0  1
2009 Zhang Z, Gildersleeve J, Yang YY, Xu R, Loo JA, Uryu S, Wong CH, Schultz PG. Retraction. Science (New York, N.Y.). 326: 1187. PMID 19965450 DOI: 10.1126/science.326.5957.1187-a  1
2009 Averette KM, Pratt MR, Yang Y, Bassilian S, Whitelegge JP, Loo JA, Muir TW, Bradley KA. Anthrax lethal toxin induced lysosomal membrane permeabilization and cytosolic cathepsin release is Nlrp1b/Nalp1b-dependent. Plos One. 4: e7913. PMID 19924255 DOI: 10.1371/journal.pone.0007913  1
2009 Yan W, Apweiler R, Balgley BM, Boontheung P, Bundy JL, Cargile BJ, Cole S, Fang X, Gonzalez-Begne M, Griffin TJ, Hagen F, Hu S, Wolinsky LE, Lee CS, Malamud D, ... ... Loo JA, et al. Systematic comparison of the human saliva and plasma proteomes. Proteomics. Clinical Applications. 3: 116-134. PMID 19898684 DOI: 10.1002/prca.200800140  1
2009 Gonzalez O, Fontanes V, Raychaudhuri S, Loo R, Loo J, Arumugaswami V, Sun R, Dasgupta A, French SW. The heat shock protein inhibitor Quercetin attenuates hepatitis C virus production. Hepatology (Baltimore, Md.). 50: 1756-64. PMID 19839005 DOI: 10.1002/hep.23232  1
2009 Kim HI, Kim H, Pang ES, Ryu EK, Beegle LW, Loo JA, Goddard WA, Kanik I. Structural characterization of unsaturated phosphatidylcholines using traveling wave ion mobility spectrometry. Analytical Chemistry. 81: 8289-97. PMID 19764704 DOI: 10.1021/ac900672a  1
2009 Mosessian S, Avliyakulov NK, Mulholland DJ, Boontheung P, Loo JA, Wu H. Analysis of PTEN complex assembly and identification of heterogeneous nuclear ribonucleoprotein C as a component of the PTEN-associated complex. The Journal of Biological Chemistry. 284: 30159-66. PMID 19740742 DOI: 10.1074/jbc.M109.027995  1
2009 Zhang L, Wang M, Kang X, Boontheung P, Li N, Nel AE, Loo JA. Oxidative stress and asthma: proteome analysis of chitinase-like proteins and FIZZ1 in lung tissue and bronchoalveolar lavage fluid. Journal of Proteome Research. 8: 1631-8. PMID 19714806 DOI: 10.1021/pr800685h  1
2009 Lu KV, Zhu S, Cvrljevic A, Huang TT, Sarkaria S, Ahkavan D, Dang J, Dinca EB, Plaisier SB, Oderberg I, Lee Y, Chen Z, Caldwell JS, Xie Y, Loo JA, et al. Fyn and SRC are effectors of oncogenic epidermal growth factor receptor signaling in glioblastoma patients. Cancer Research. 69: 6889-98. PMID 19690143 DOI: 10.1158/0008-5472.CAN-09-0347  1
2009 Pesek JJ, Matyska MT, Loo JA, Fischer SM, Sana TR. Analysis of hydrophilic metabolites in physiological fluids by HPLC-MS using a silica hydride-based stationary phase. Journal of Separation Science. 32: 2200-8. PMID 19569099 DOI: 10.1002/jssc.200900270  1
2009 Maji SK, Ogorzalek Loo RR, Inayathullah M, Spring SM, Vollers SS, Condron MM, Bitan G, Loo JA, Teplow DB. Amino acid position-specific contributions to amyloid beta-protein oligomerization. The Journal of Biological Chemistry. 284: 23580-91. PMID 19567875 DOI: 10.1074/jbc.M109.038133  1
2009 Nie M, Xie Y, Loo JA, Courey AJ. Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control, Ras signaling, and early pattern formation. Plos One. 4: e5905. PMID 19529778 DOI: 10.1371/journal.pone.0005905  1
2009 Ly T, Yin S, Loo JA, Julian RR. Electron-induced dissociation of protonated peptides yields backbone fragmentation consistent with a hydrogen-deficient radical. Rapid Communications in Mass Spectrometry : Rcm. 23: 2099-101. PMID 19489022 DOI: 10.1002/rcm.4117  1
2009 Tienson HL, Dabir DV, Neal SE, Loo R, Hasson SA, Boontheung P, Kim SK, Loo JA, Koehler CM. Reconstitution of the mia40-erv1 oxidative folding pathway for the small tim proteins. Molecular Biology of the Cell. 20: 3481-90. PMID 19477928 DOI: 10.1091/mbc.E08-10-1062  1
2009 Tao L, Kaddis CS, Ogorzalek Loo RR, Grover GN, Loo JA, Maynard HD. Synthetic approach to homodimeric protein-polymer conjugates. Chemical Communications (Cambridge, England). 2148-50. PMID 19360175 DOI: 10.1039/b822799c  1
2009 Sohn CH, Chung CK, Yin S, Ramachandran P, Loo JA, Beauchamp JL. Probing the mechanism of electron capture and electron transfer dissociation using tags with variable electron affinity. Journal of the American Chemical Society. 131: 5444-59. PMID 19331417 DOI: 10.1021/ja806534r  1
2009 Yin S, Loo JA. Mass spectrometry detection and characterization of noncovalent protein complexes. Methods in Molecular Biology (Clifton, N.J.). 492: 273-82. PMID 19241039 DOI: 10.1007/978-1-59745-493-3_16  1
2009 Francoleon DR, Boontheung P, Yang Y, Kin U, Ytterberg AJ, Denny PA, Denny PC, Loo JA, Gunsalus RP, Loo RR. S-layer, surface-accessible, and concanavalin A binding proteins of Methanosarcina acetivorans and Methanosarcina mazei. Journal of Proteome Research. 8: 1972-82. PMID 19228054 DOI: 10.1021/pr800923e  1
2009 Leary JA, Loo JA. Report of the 2008 ASMS Fall Workshop: protein-protein and protein-ligand interactions. Journal of the American Society For Mass Spectrometry. 20: R1-2. PMID 19216089 DOI: 10.1016/j.jasms.2009.01.003  1
2009 Lu QY, Yang Y, Jin YS, Zhang ZF, Heber D, Li FP, Dubinett SM, Sondej MA, Loo JA, Rao JY. Effects of green tea extract on lung cancer A549 cells: proteomic identification of proteins associated with cell migration. Proteomics. 9: 757-67. PMID 19137550 DOI: 10.1002/pmic.200800019  1
2009 Loo JA. Rantings of an associate editor: a plea to manuscript reviewers. Journal of the American Society For Mass Spectrometry. 20: i-ii. PMID 19135387 DOI: 10.1016/j.jasms.2008.12.008  1
2009 Lomeli SH, Yin S, Ogorzalek Loo RR, Loo JA. Increasing charge while preserving noncovalent protein complexes for ESI-MS. Journal of the American Society For Mass Spectrometry. 20: 593-6. PMID 19101165 DOI: 10.1016/j.jasms.2008.11.013  1
2009 Nelson W, Peng I, Loo JA, Garrell RL, Kim CJ. An ewod droplet microfluidic chip with integrated local temperature control for multiplex proteomics Proceedings of the Ieee International Conference On Micro Electro Mechanical Systems (Mems). 280-283. DOI: 10.1109/MEMSYS.2009.4805373  1
2008 Ramachandran P, Boontheung P, Pang E, Yan W, Wong DT, Loo JA. Comparison of N-linked Glycoproteins in Human Whole Saliva, Parotid, Submandibular, and Sublingual Glandular Secretions Identified using Hydrazide Chemistry and Mass Spectrometry. Clinical Proteomics. 4: 80-104. PMID 21960768 DOI: 10.1007/s12014-008-9005-0  1
2008 Kudryashov DS, Durer ZA, Ytterberg AJ, Sawaya MR, Pashkov I, Prochazkova K, Yeates TO, Loo RR, Loo JA, Satchell KJ, Reisler E. Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin. Proceedings of the National Academy of Sciences of the United States of America. 105: 18537-42. PMID 19015515 DOI: 10.1073/pnas.0808082105  1
2008 Hu S, Arellano M, Boontheung P, Wang J, Zhou H, Jiang J, Elashoff D, Wei R, Loo JA, Wong DT. Salivary proteomics for oral cancer biomarker discovery. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 14: 6246-52. PMID 18829504 DOI: 10.1158/1078-0432.CCR-07-5037  1
2008 Claypool SM, Boontheung P, McCaffery JM, Loo JA, Koehler CM. The cardiolipin transacylase, tafazzin, associates with two distinct respiratory components providing insight into Barth syndrome. Molecular Biology of the Cell. 19: 5143-55. PMID 18799610 DOI: 10.1091/mbc.E08-09-0896  1
2008 Claypool SM, Oktay Y, Boontheung P, Loo JA, Koehler CM. Cardiolipin defines the interactome of the major ADP/ATP carrier protein of the mitochondrial inner membrane. The Journal of Cell Biology. 182: 937-50. PMID 18779372 DOI: 10.1083/jcb.200801152  1
2008 Peng IX, Ogorzalek Loo RR, Shiea J, Loo JA. Reactive-electrospray-assisted laser desorption/ionization for characterization of peptides and proteins. Analytical Chemistry. 80: 6995-7003. PMID 18683952 DOI: 10.1021/ac800870c  1
2008 Yin S, Xie Y, Loo JA. Mass spectrometry of protein-ligand complexes: enhanced gas-phase stability of ribonuclease-nucleotide complexes. Journal of the American Society For Mass Spectrometry. 19: 1199-208. PMID 18565758 DOI: 10.1016/j.jasms.2008.05.012  1
2008 Denny P, Hagen FK, Hardt M, Liao L, Yan W, Arellanno M, Bassilian S, Bedi GS, Boontheung P, Cociorva D, Delahunty CM, Denny T, Dunsmore J, Faull KF, Gilligan J, ... ... Loo JA, et al. The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions. Journal of Proteome Research. 7: 1994-2006. PMID 18361515 DOI: 10.1021/pr700764j  1
2008 Chen H, Boontheung P, Loo RR, Xie Y, Loo JA, Rao JY, Collins MD. Proteomic analysis to characterize differential mouse strain sensitivity to cadmium-induced forelimb teratogenesis. Birth Defects Research. Part a, Clinical and Molecular Teratology. 82: 187-99. PMID 18302266 DOI: 10.1002/bdra.20444  1
2008 Grintsevich EE, Benchaar SA, Warshaviak D, Boontheung P, Halgand F, Whitelegge JP, Faull KF, Loo RR, Sept D, Loo JA, Reisler E. Mapping the cofilin binding site on yeast G-actin by chemical cross-linking. Journal of Molecular Biology. 377: 395-409. PMID 18258262 DOI: 10.1016/j.jmb.2007.12.073  1
2008 Faller M, Matsunaga M, Yin S, Loo JA, Guo F. Heme is involved in microRNA processing (Nature Structural and Molecular Biology (2007) 14, (23-29)) Nature Structural and Molecular Biology. 15: 1125. DOI: 10.1038/nsmb1008.1125  1
2008 Chatterjee D, Ytterberg AJ, Son SU, Loo JA, Garrell RL. Integration of protein processing steps on a digital microfluidics platform for analysis by MALDI-MS 12th International Conference On Miniaturized Systems For Chemistry and Life Sciences - the Proceedings of Microtas 2008 Conference. 1072-1074.  1
2007 Whitelegge JP, Zabrouskov V, Halgand F, Souda P, Bassilian S, Yan W, Wolinsky L, Loo JA, Wong DT, Faull KF. Protein-Sequence Polymorphisms and Post-translational Modifications in Proteins from Human Saliva using Top-Down Fourier-transform Ion Cyclotron Resonance Mass Spectrometry. International Journal of Mass Spectrometry. 268: 190-197. PMID 19050733 DOI: 10.1016/j.ijms.2007.08.008  1
2007 Hu S, Wang J, Meijer J, Ieong S, Xie Y, Yu T, Zhou H, Henry S, Vissink A, Pijpe J, Kallenberg C, Elashoff D, Loo JA, Wong DT. Salivary proteomic and genomic biomarkers for primary Sjögren's syndrome. Arthritis and Rheumatism. 56: 3588-600. PMID 17968930 DOI: 10.1002/art.22954  1
2007 Jung EJ, Avliyakulov NK, Boontheung P, Loo JA, Nel AE. Pro-oxidative DEP chemicals induce heat shock proteins and an unfolding protein response in a bronchial epithelial cell line as determined by DIGE analysis. Proteomics. 7: 3906-18. PMID 17922515 DOI: 10.1002/pmic.200700377  1
2007 Hu S, Yu T, Xie Y, Yang Y, Li Y, Zhou X, Tsung S, Loo RR, Loo JA, Wong DT. Discovery of oral fluid biomarkers for human oral cancer by mass spectrometry Cancer Genomics and Proteomics. 4: 55-64. PMID 17804867  1
2007 Tarasev M, Kaddis CS, Yin S, Loo JA, Burgner J, Ballou DP. Similar enzymes, different structures: Phthalate dioxygenase is an α3α3 stacked hexamer, not an α3β3 trimer like "normal" Rieske oxygenases Archives of Biochemistry and Biophysics. 466: 31-39. PMID 17764654 DOI: 10.1016/j.abb.2007.07.001  1
2007 Hu S, Loo JA, Wong DT. Human saliva proteome analysis and disease biomarker discovery. Expert Review of Proteomics. 4: 531-8. PMID 17705710 DOI: 10.1586/14789450.4.4.531  1
2007 Peng IX, Shiea J, Ogorzalek Loo RR, Loo JA. Electrospray-assisted laser desorption/ionization and tandem mass spectrometry of peptides and proteins. Rapid Communications in Mass Spectrometry : Rcm. 21: 2541-6. PMID 17639579 DOI: 10.1002/rcm.3154  1
2007 Januszyk K, Li PW, Villareal V, Branciforte D, Wu H, Xie Y, Feigon J, Loo JA, Martin SL, Clubb RT. Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1. The Journal of Biological Chemistry. 282: 24893-904. PMID 17569664 DOI: 10.1074/jbc.M702023200  1
2007 Liu B, Yang Y, Chernishof V, Loo RR, Jang H, Tahk S, Yang R, Mink S, Shultz D, Bellone CJ, Loo JA, Shuai K. Proinflammatory stimuli induce IKKalpha-mediated phosphorylation of PIAS1 to restrict inflammation and immunity. Cell. 129: 903-14. PMID 17540171 DOI: 10.1016/j.cell.2007.03.056  1
2007 Hu S, Loo JA, Wong DT. Human saliva proteome analysis. Annals of the New York Academy of Sciences. 1098: 323-9. PMID 17435138 DOI: 10.1196/annals.1384.015  1
2007 Kaddis CS, Lomeli SH, Yin S, Berhane B, Apostol MI, Kickhoefer VA, Rome LH, Loo JA. Sizing large proteins and protein complexes by electrospray ionization mass spectrometry and ion mobility. Journal of the American Society For Mass Spectrometry. 18: 1206-16. PMID 17434746 DOI: 10.1016/j.jasms.2007.02.015  1
2007 Kaddis CS, Loo JA. Native protein MS and ion mobility large flying proteins with ESI. Analytical Chemistry. 79: 1778-84. PMID 17375392 DOI: 10.1021/ac071878c  1
2007 Loo RR, Loo JA. Matrix-assisted laser desorption/ionization-mass spectrometry of hydrophobic proteins in mixtures using formic acid, perfluorooctanoic acid, and sorbitol. Analytical Chemistry. 79: 1115-25. PMID 17263344 DOI: 10.1021/ac061916c  0.88
2007 Thevis M, Loo JA, Loo RR, Schänzer W. Recommended criteria for the mass spectrometric identification of target peptides and proteins (<8 kDa) in sports drug testing. Rapid Communications in Mass Spectrometry : Rcm. 21: 297-304. PMID 17200979 DOI: 10.1002/rcm.2848  1
2007 Benchaar SA, Xie Y, Phillips M, Loo RR, Galkin VE, Orlova A, Thevis M, Muhlrad A, Almo SC, Loo JA, Egelman EH, Reisler E. Mapping the interaction of cofilin with subdomain 2 on actin. Biochemistry. 46: 225-33. PMID 17198393 DOI: 10.1021/bi0610754  1
2007 Faller M, Matsunaga M, Yin S, Loo JA, Guo F. Heme is involved in microRNA processing. Nature Structural & Molecular Biology. 14: 23-9. PMID 17159994 DOI: 10.1038/nsmb1182  1
2007 Laschober C, Kaddis CS, Reischl GP, Loo JA, Allmaier G, Szymanski WW. Comparison of various nano-differential mobility analysers (nDMAs) applying globular proteins Journal of Experimental Nanoscience. 2: 291-301. DOI: 10.1080/17458080701660550  1
2006 Skaggs BJ, Gorre ME, Ryvkin A, Burgess MR, Xie Y, Han Y, Komisopoulou E, Brown LM, Loo JA, Landaw EM, Sawyers CL, Graeber TG. Phosphorylation of the ATP-binding loop directs oncogenicity of drug-resistant BCR-ABL mutants. Proceedings of the National Academy of Sciences of the United States of America. 103: 19466-71. PMID 17164333 DOI: 10.1073/pnas.0609239103  1
2006 Hu S, Li Y, Wang J, Xie Y, Tjon K, Wolinsky L, Loo RR, Loo JA, Wong DT. Human saliva proteome and transcriptome. Journal of Dental Research. 85: 1129-33. PMID 17122167 DOI: 10.1177/154405910608501212  1
2006 Xie Y, Zhang J, Yin S, Loo JA. Top-down ESI-ECD-FT-ICR mass spectrometry localizes noncovalent protein-ligand binding sites. Journal of the American Chemical Society. 128: 14432-3. PMID 17090006 DOI: 10.1021/ja063197p  1
2006 Hu S, Loo JA, Wong DT. Human body fluid proteome analysis. Proteomics. 6: 6326-53. PMID 17083142 DOI: 10.1002/pmic.200600284  1
2006 Lee NV, Sato M, Annis DS, Loo JA, Wu L, Mosher DF, Iruela-Arispe ML. ADAMTS1 mediates the release of antiangiogenic polypeptides from TSP1 and 2. The Embo Journal. 25: 5270-83. PMID 17082774 DOI: 10.1038/sj.emboj.7601400  1
2006 Poderycki MJ, Kickhoefer VA, Kaddis CS, Raval-Fernandes S, Johansson E, Zink JI, Loo JA, Rome LH. The vault exterior shell is a dynamic structure that allows incorporation of vault-associated proteins into its interior. Biochemistry. 45: 12184-93. PMID 17002318 DOI: 10.1021/bi0610552  1
2006 Moon H, Wheeler AR, Garrell RL, Loo JA, Kim CJ. An integrated digital microfluidic chip for multiplexed proteomic sample preparation and analysis by MALDI-MS. Lab On a Chip. 6: 1213-9. PMID 16929401 DOI: 10.1039/b601954d  1
2006 Ramachandran P, Boontheung P, Xie Y, Sondej M, Wong DT, Loo JA. Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. Journal of Proteome Research. 5: 1493-503. PMID 16740002 DOI: 10.1021/pr050492k  1
2006 Loo JA, Kaddis CS. Direct Characterization of Protein Complexes by Electrospray Ionization Mass Spectrometry and Ion Mobility Analysis Mass Spectrometry of Protein Interactions. 1-23. DOI: 10.1002/9780470146330.ch1  1
2005 Divakaruni AV, Loo RR, Xie Y, Loo JA, Gober JW. The cell-shape protein MreC interacts with extracytoplasmic proteins including cell wall assembly complexes in Caulobacter crescentus. Proceedings of the National Academy of Sciences of the United States of America. 102: 18602-7. PMID 16344480 DOI: 10.1073/pnas.0507937102  1
2005 Leikina E, Delanoe-Ayari H, Melikov K, Cho MS, Chen A, Waring AJ, Wang W, Xie Y, Loo JA, Lehrer RI, Chernomordik LV. Carbohydrate-binding molecules inhibit viral fusion and entry by crosslinking membrane glycoproteins. Nature Immunology. 6: 995-1001. PMID 16155572 DOI: 10.1038/ni1248  0.6
2005 Loo JA, Berhane B, Kaddis CS, Wooding KM, Xie Y, Kaufman SL, Chernushevich IV. Electrospray ionization mass spectrometry and ion mobility analysis of the 20S proteasome complex. Journal of the American Society For Mass Spectrometry. 16: 998-1008. PMID 15914020 DOI: 10.1016/j.jasms.2005.02.017  1
2005 Wang M, Xiao GG, Li N, Xie Y, Loo JA, Nel AE. Use of a fluorescent phosphoprotein dye to characterize oxidative stress-induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals. Electrophoresis. 26: 2092-108. PMID 15880549 DOI: 10.1002/elps.200410428  0.6
2005 Hu S, Xie Y, Ramachandran P, Ogorzalek Loo RR, Li Y, Loo JA, Wong DT. Large-scale identification of proteins in human salivary proteome by liquid chromatography/mass spectrometry and two-dimensional gel electrophoresis-mass spectrometry. Proteomics. 5: 1714-28. PMID 15800970 DOI: 10.1002/pmic.200401037  1
2005 Wheeler AR, Moon H, Bird CA, Loo RR, Kim CJ, Loo JA, Garrell RL. Digital microfluidics with in-line sample purification for proteomics analyses with MALDI-MS. Analytical Chemistry. 77: 534-40. PMID 15649050 DOI: 10.1021/ac048754+  1
2005 Kani K, Warren CM, Kaddis CS, Loo JA, Landgraf R. Oligomers of ERBB3 have two distinct interfaces that differ in their sensitivity to disruption by heregulin. The Journal of Biological Chemistry. 280: 8238-47. PMID 15611073 DOI: 10.1074/jbc.M410944200  1
2004 Dyall SD, Yan W, Delgadillo-Correa MG, Lunceford A, Loo JA, Clarke CF, Johnson PJ. Non-mitochondrial complex I proteins in a hydrogenosomal oxidoreductase complex. Nature. 431: 1103-7. PMID 15510149 DOI: 10.1038/nature02990  0.32
2004 Hu S, Denny P, Denny P, Xie Y, Loo JA, Wolinsky LE, Li Y, McBride J, Ogorzalek Loo RR, Navazesh M, Wong DT. Differentially expressed protein markers in human submandibular and sublingual secretions. International Journal of Oncology. 25: 1423-30. PMID 15492834  1
2004 Loo JA, Gross ML. Focus in honor of Carol V. Robinson, 2003 Biemann Medal awardee. Journal of the American Society For Mass Spectrometry. 15: 1379-81. PMID 15465349 DOI: 10.1016/j.jasms.2004.07.011  0.72
2004 Guo S, Ferl GZ, Deora R, Riedinger M, Yin S, Kerwin JL, Loo JA, Witte ON. A phosphorylation site in Bruton's tyrosine kinase selectively regulates B cell calcium signaling efficiency by altering phospholipase C-gamma activation. Proceedings of the National Academy of Sciences of the United States of America. 101: 14180-5. PMID 15375214 DOI: 10.1073/pnas.0405878101  1
2004 Wheeler AR, Moon H, Kim CJ, Loo JA, Garrell RL. Electrowetting-based microfluidics for analysis of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry. Analytical Chemistry. 76: 4833-8. PMID 15307795 DOI: 10.1021/ac0498112  1
2004 Ogorzalek Loo RR, Yam L, Loo JA, Schumaker VN. Virtual two-dimensional gel electrophoresis of high-density lipoproteins. Electrophoresis. 25: 2384-91. PMID 15274021 DOI: 10.1002/elps.200405955  1
2003 Thevis M, Ogorzalek Loo RR, Loo JA, Schänzer W. Doping control analysis of bovine hemoglobin-based oxygen therapeutics in human plasma by LC-electrospray ionization-MS/MS. Analytical Chemistry. 75: 3287-93. PMID 14570175  0.72
1992 Loo JA, Quinn JP, Ryu SI, Henry KD, Senko MW, McLafferty FW. High-resolution tandem mass spectrometry of large biomolecules. Proceedings of the National Academy of Sciences of the United States of America. 89: 286-9. PMID 1309610  1
1987 Amster IJ, Loo JA, Furlong JJ, McLafferty FW. Cesium ion desorption ionization with Fourier transform mass spectrometry. Analytical Chemistry. 59: 313-7. PMID 3619044  1
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