Jonathan R. Beckwith - Related publications

Harvard Medical School, Boston, MA, United States 
bacterial genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yadavalli SS, Yuan J. Bacterial small membrane proteins: the Swiss army knife of regulators at the lipid bilayer. Journal of Bacteriology. JB0034421. PMID 34516282 DOI: 10.1128/JB.00344-21   
2021 Johnson RL, Blaber HG, Evans T, Worthy HL, Pope JR, Jones DD. Designed Artificial Protein Heterodimers With Coupled Functions Constructed Using Bio-Orthogonal Chemistry. Frontiers in Chemistry. 9: 733550. PMID 34422774 DOI: 10.3389/fchem.2021.733550   
2021 Silva FSR, Santos SPO, Meyer R, Silva ES, Pinheiro CS, Alcantara-Neves NM, Pacheco LGC. In vivo cleavage of solubility tags as a tool to enhance the levels of soluble recombinant proteins in Escherichia coli. Biotechnology and Bioengineering. PMID 34370304 DOI: 10.1002/bit.27912   
2021 Saikat ASM, Uddin ME, Ahmad T, Mahmud S, Imran MAS, Ahmed S, Alyami SA, Moni MA. Structural and Functional Elucidation of IF-3 Protein of Involved in Protein Biosynthesis: An Approach. Biomed Research International. 2021: 9050026. PMID 34307671 DOI: 10.1155/2021/9050026   
2021 Sultana S, Anderson GM, Hoffmann KP, Dahl JU. Extraction and Visualization of Protein Aggregates after Treatment of Escherichia coli with a Proteotoxic Stressor. Journal of Visualized Experiments : Jove. PMID 34279493 DOI: 10.3791/62628   
2021 Yousefi R, Jevdokimenko K, Kluever V, Pacheu-Grau D, Fornasiero EF. Influence of Subcellular Localization and Functional State on Protein Turnover. Cells. 10. PMID 34359917 DOI: 10.3390/cells10071747   
2021 Cai X, Liu L, Qiu C, Wen C, He Y, Cui Y, Li S, Zhang X, Zhang L, Tian C, Bi L, Zhou ZH, Gong W. Identification and architecture of a putative secretion tube across mycobacterial outer envelope. Science Advances. 7. PMID 34417177 DOI: 10.1126/sciadv.abg5656   
2021 Bease AG, Blackburn EA, Chintoan-Uta C, Webb S, Cassady-Cain RL, Stevens MP. Activity of Lymphostatin, A Lymphocyte Inhibitory Virulence Factor of Pathogenic Escherichia coli, is Dependent on a Cysteine Protease Motif. Journal of Molecular Biology. 433: 167200. PMID 34400181 DOI: 10.1016/j.jmb.2021.167200   
2021 Akintade DD, Chaudhuri B. FK506-binding protein 2 (FKBP13) inhibit Bax-induced apoptosis in Saccharomyces cerevisiae (yeast). Cell Biology and Toxicology. PMID 34342774 DOI: 10.1007/s10565-021-09633-w   
2021 Kozuka K, Nakano S, Asano Y, Ito S. Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations. Biochemistry. 60: 2309-2319. PMID 34254784 DOI: 10.1021/acs.biochem.1c00309   
2021 Hong Z, Liu J, Chen Y. An interpretable machine learning method for homo-trimeric protein interface residue-residue interaction prediction. Biophysical Chemistry. 278: 106666. PMID 34418678 DOI: 10.1016/j.bpc.2021.106666   
2021 McLellan H, Armstrong MR, Birch PRJ. Yeast Two-Hybrid Screening for Identification of Protein-Protein Interactions in Solanum tuberosum. Methods in Molecular Biology (Clifton, N.J.). 2354: 95-110. PMID 34448156 DOI: 10.1007/978-1-0716-1609-3_4   
2021 Gideon DA, Nirusimhan V, E JC, Sudarsha K, Manoj KM. Mechanism of electron transfers mediated by cytochromes and in mitochondria and endoplasmic reticulum: classical and murburn perspectives. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33998974 DOI: 10.1080/07391102.2021.1925154   
2021 Sarma A, Gunasekaran D, Rex DAB, Sikha T, Phukan H, Kiran KM, Pinto SM, Prasad TSK, Madanan MG. Extracellular Proteome Analysis Shows the Abundance of Histidine Kinase Sensor Protein, DNA Helicase, Putative Lipoprotein Containing Peptidase M75 Domain and Peptidase C39 Domain Protein in Grown in EMJH Medium. Pathogens (Basel, Switzerland). 10. PMID 34358002 DOI: 10.3390/pathogens10070852   
2021 Xu D, Li C. Gene 33/Mig6/ERRFI1, an Adapter Protein with Complex Functions in Cell Biology and Human Diseases. Cells. 10. PMID 34206547 DOI: 10.3390/cells10071574   
2021 Welsh CL, Pandey P, Ahuja LG. Protein Tyrosine Phosphatases: A new paradigm in an old signaling system? Advances in Cancer Research. 152: 263-303. PMID 34353440 DOI: 10.1016/bs.acr.2021.06.001   
2021 Xu M, Zhang X, Yu J, Guo Z, Li Y, Song X, He K, Li G, Chi Y. Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in in Peanuts. Frontiers in Microbiology. 12: 719337. PMID 34489910 DOI: 10.3389/fmicb.2021.719337   
2021 Gray T, Storz G, Papenfort K. Small Proteins; Big Questions. Journal of Bacteriology. JB0034121. PMID 34309401 DOI: 10.1128/JB.00341-21   
2021 Kumawat M, Chaudhary D, Nabi B, Kumar M, Sarma DK, Shubham S, Karuna I, Ahlawat N, Ahlawat S. Purification and characterization of Cyclophilin: a protein associated with protein folding in Salmonella Typhimurium. Archives of Microbiology. PMID 34417854 DOI: 10.1007/s00203-021-02519-9   
2021 Yu ZQ, Liu XM, Zhao D, Xu DD, Du LL. Visual detection of binary, ternary, and quaternary protein interactions in fission yeast by Pil1 co-tethering assay. Journal of Cell Science. PMID 34499173 DOI: 10.1242/jcs.258774   
2021 Meng L, Gao X, Liu X, Sun M, Yan H, Li A, Yang Y, Bai Z. Enhancement of heterologous protein production in Corynebacterium glutamicum via atmospheric and room temperature plasma mutagenesis and high-throughput screening. Journal of Biotechnology. PMID 34311028 DOI: 10.1016/j.jbiotec.2021.07.010   
2021 Meng L, Gao X, Liu X, Sun M, Yan H, Li A, Yang Y, Bai Z. Enhancement of heterologous protein production in Corynebacterium glutamicum via atmospheric and room temperature plasma mutagenesis and high-throughput screening. Journal of Biotechnology. PMID 34311028 DOI: 10.1016/j.jbiotec.2021.07.010   
2021 Zhang D, Dailey OR, Simon DJ, Roca-Datzer K, Jami-Alahmadi Y, Hennen MS, Wolfschlegel JA, Koehler CM, Dabir DV. Aim32 is a dual-localized 2Fe-2S mitochondrial protein that functions in redox quality control. The Journal of Biological Chemistry. 101135. PMID 34461091 DOI: 10.1016/j.jbc.2021.101135   
2021 Tang QY, Kaneko K. Dynamics-Evolution Correspondence in Protein Structures. Physical Review Letters. 127: 098103. PMID 34506164 DOI: 10.1103/PhysRevLett.127.098103   
2021 Yang H, Qu J, Zou W, Shen W, Chen X. An overview and future prospects of recombinant protein production in Bacillus subtilis. Applied Microbiology and Biotechnology. PMID 34468804 DOI: 10.1007/s00253-021-11533-2   
2021 Keeble AH, Yadav VK, Ferla MP, Bauer CC, Chuntharpursat-Bon E, Huang J, Bon RS, Howarth M. DogCatcher allows loop-friendly protein-protein ligation. Cell Chemical Biology. PMID 34324879 DOI: 10.1016/j.chembiol.2021.07.005   
2021 Timpmann K, Linnanto JM, Yadav D, Kangur L, Freiberg A. Hydrostatic High-Pressure-Induced Denaturation of LH2 Membrane Proteins. The Journal of Physical Chemistry. B. 125: 9979-9989. PMID 34460261 DOI: 10.1021/acs.jpcb.1c05789   
2021 Ochiai A, Sawaguchi S, Memezawa S, Seki Y, Morimoto T, Oizumi H, Ohbuchi K, Yamamoto M, Mizoguchi K, Miyamoto Y, Yamauchi J. Knockdown of Golgi Stress-Responsive Caspase-2 Ameliorates HLD17-Associated AIMP2 Mutant-Mediated Inhibition of Oligodendroglial Cell Morphological Differentiation. Neurochemical Research. PMID 34523057 DOI: 10.1007/s11064-021-03451-6   
2021 Prahlad J, Struble LR, Lutz WE, Wallin SA, Khurana S, Schnaubelt A, Broadhurst MJ, Bayles KW, Borgstahl GEO. CyDisCo production of functional recombinant SARS-CoV-2 spike receptor binding domain. Protein Science : a Publication of the Protein Society. PMID 34191362 DOI: 10.1002/pro.4152   
2021 Huang L, Agrawal T, Zhu G, Yu S, Tao L, Lin J, Marmorstein R, Shorter J, Yang X. DAXX represents a new type of protein-folding enabler. Nature. PMID 34408321 DOI: 10.1038/s41586-021-03824-5   
2021 Gaspar VP, Ramos AC, Cloutier P, Pattaro Junior JR, Duarte Junior FF, Bouchard A, Seixas FAV, Coulombe B, Fernandez MA. Interactome Analysis of KIN (Kin17) Shows New Functions of This Protein. Current Issues in Molecular Biology. 43: 767-781. PMID 34449532 DOI: 10.3390/cimb43020056   
2021 Perszyk RE, Kristensen AS, Lyuboslavsky P, Traynelis SF. Three-dimensional missense tolerance ratio analysis. Genome Research. PMID 34301626 DOI: 10.1101/gr.275528.121   
2021 Santilli RT, Williamson JE, Shibata Y, Sowers RP, Fleischman AN, Tan S. The Penn State Protein Ladder system for inexpensive protein molecular weight markers. Scientific Reports. 11: 16703. PMID 34408191 DOI: 10.1038/s41598-021-96051-x   
2021 Pedreira T, Elfmann C, Singh N, Stülke J. SynWiki: Functional annotation of the first artificial organism Mycoplasma mycoides JCVI-syn3A. Protein Science : a Publication of the Protein Society. PMID 34515387 DOI: 10.1002/pro.4179   
2021 Chen L, Kashina A. Post-translational Modifications of the Protein Termini. Frontiers in Cell and Developmental Biology. 9: 719590. PMID 34395449 DOI: 10.3389/fcell.2021.719590   
2021 Bernard F, Jouette J, Durieu C, Le Borgne R, Guichet A, Claret S. GFP-Tagged Protein Detection by Electron Microscopy Using a GBP-APEX Tool in . Frontiers in Cell and Developmental Biology. 9: 719582. PMID 34476234 DOI: 10.3389/fcell.2021.719582   
2021 Park SY, Egan S, Cura AJ, Aron KL, Xu X, Zheng M, Borys M, Ghose S, Li Z, Lee K. Untargeted proteomics reveals upregulation of stress response pathways during CHO-based monoclonal antibody manufacturing process leading to disulfide bond reduction. Mabs. 13: 1963094. PMID 34424810 DOI: 10.1080/19420862.2021.1963094   
2021 Li Y, Wang Z, Li LP, You ZH, Huang WZ, Zhan XK, Wang YB. Robust and accurate prediction of protein-protein interactions by exploiting evolutionary information. Scientific Reports. 11: 16910. PMID 34413375 DOI: 10.1038/s41598-021-96265-z   
2021 Liu X, Li M, Li Y, Chen Z, Zhuge C, Ouyang Y, Zhao Y, Lin Y, Xie Q, Yang C, Lai J. An ABHD17-like hydrolase screening system to identify de-S-acylation enzymes of protein substrates in plant cells. The Plant Cell. PMID 34338800 DOI: 10.1093/plcell/koab199   
2021 Park DJ, Nguyen NT, Kim BN, Kim YH, Min J. Intracellular protein delivery using QRPL - A vacuolar targeting signal on carboxypeptidase Y. Enzyme and Microbial Technology. 149: 109848. PMID 34311885 DOI: 10.1016/j.enzmictec.2021.109848   
2021 Yang X, Miao H, Xiao R, Wang L, Zhao Y, Wu Q, Ji Y, Du J, Qin H, Xuan W. Diverse protein manipulations with genetically encoded glutamic acid benzyl ester. Chemical Science. 12: 9778-9785. PMID 34349951 DOI: 10.1039/d1sc01882e   
2021 Mogilevsky CS, Lobba MJ, Brauer DD, Marmelstein AM, Maza JC, Gleason JM, Doudna JA, Francis MB. Synthesis of Multi-Protein Complexes through Charge-Directed Sequential Activation of Tyrosine Residues. Journal of the American Chemical Society. PMID 34382787 DOI: 10.1021/jacs.1c03079   
2021 Frauenstein A, Ebner S, Hansen FM, Sinha A, Phulphagar K, Swatek K, Hornburg D, Mann M, Meissner F. Identification of covalent modifications regulating immune signaling complex composition and phenotype. Molecular Systems Biology. 17: e10125. PMID 34318608 DOI: 10.15252/msb.202010125   
2021 Bowman L, Palmer T. The Type VII Secretion System of . Annual Review of Microbiology. PMID 34343022 DOI: 10.1146/annurev-micro-012721-123600   
2021 Ramadas B, Kumar Pain P, Manna D. LYTACs: An Emerging Tool for the Degradation of Non-Cytosolic Proteins. Chemmedchem. PMID 34296796 DOI: 10.1002/cmdc.202100393   
2021 Okada H, MacTaggart B, Bi E. Analysis of local protein accumulation kinetics by live-cell imaging in yeast systems. Star Protocols. 2: 100733. PMID 34458867 DOI: 10.1016/j.xpro.2021.100733   
2021 Zhang L, Wu CL, Yang P, Wang YC, Zhang LL, Yang XY. Chilling injury mechanism of hardy kiwifruit (Actinidia arguta) was revealed by proteome of label-free techniques. Journal of Food Biochemistry. e13897. PMID 34390016 DOI: 10.1111/jfbc.13897   
2021 Franz M, Mörchen B, Degenhart C, Gülden D, Shkura O, Wolters D, Koch U, Klebl B, Stoll R, Helfrich I, Scherkenbeck J. Sequence-Selective Covalent CaaX-Box Receptors Prevent Farnesylation of Oncogenic Ras Proteins and Impact MAPK/PI3 K Signaling. Chemmedchem. 16: 2504-2514. PMID 33899342 DOI: 10.1002/cmdc.202100167   
2021 Aghaei Gharehbolagh S, Mafakher L, Salehi Z, Asgari Y, Hashemi SJ, Mahmoudi S, Nasimi M, Rezaie S. Unveiling the structure of GPI-anchored protein of Malassezia globosa and its pathogenic role in pityriasis versicolor. Journal of Molecular Modeling. 27: 246. PMID 34379190 DOI: 10.1007/s00894-021-04853-7   
2021 Hong MJ, Kim JB, Seo YW, Kim DY. Regulation of Glycosylphosphatidylinositol-Anchored Protein (GPI-AP) Expression by F-Box/LRR-Repeat (FBXL) Protein in Wheat ( L.). Plants (Basel, Switzerland). 10. PMID 34451651 DOI: 10.3390/plants10081606