Charles A. Thomas, Jr - Related publications

Helicon Foundation 
viral DNA
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Spencer DM, Reyna AG, Pisetsky DS. The Binding of Monoclonal and Polyclonal Anti-Z-DNA Antibodies to DNA of Various Species Origin. International Journal of Molecular Sciences. 22. PMID 34445637 DOI: 10.3390/ijms22168931   
2021 Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. DNA interference states of the hypercompact CRISPR-CasΦ effector. Nature Structural & Molecular Biology. 28: 652-661. PMID 34381246 DOI: 10.1038/s41594-021-00632-3   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Guo Y, Tang J, Yao C, Yang D. Multimodules integrated functional DNA nanomaterials for intelligent drug delivery. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1753. PMID 34463046 DOI: 10.1002/wnan.1753   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Sarkar S, Dey U, Khohliwe TB, Yella VR, Kumar A. Analysis of nucleoid-associated protein-binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis. Febs Letters. PMID 34387867 DOI: 10.1002/1873-3468.14178   
2021 Zhao F, Kim W, Gao H, Liu C, Zhang Y, Chen Y, Deng M, Zhou Q, Huang J, Hu Q, Chen SH, Nowsheen S, Kloeber JA, Qin B, Yin P, et al. ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection. Nature Cell Biology. PMID 34354233 DOI: 10.1038/s41556-021-00723-9   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Rahmat RA, Humphries MA, Linacre AMT, Malik A, Saedon NA, Austin JJ. Freeze-drying improves DNA yield from teeth. Forensic Science International. 326: 110938. PMID 34343942 DOI: 10.1016/j.forsciint.2021.110938   
2021 Lin SN, Dame RT, Wuite GJL. Direct visualization of the effect of DNA structure and ionic conditions on HU-DNA interactions. Scientific Reports. 11: 18492. PMID 34531428 DOI: 10.1038/s41598-021-97763-w   
2021 Kang K, Ma Y, Sadakane K. Direct visualization of local activities of long DNA strands via image-time correlation. European Biophysics Journal : Ebj. PMID 34499211 DOI: 10.1007/s00249-021-01570-0   
2021 Kropp HM, Ludmann S, Diederichs K, Betz K, Marx A. Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase. Chembiochem : a European Journal of Chemical Biology. PMID 34486208 DOI: 10.1002/cbic.202100306   
2021 Wong KL, Liu J. Factors and methods to modulate DNA hybridization kinetics. Biotechnology Journal. e2000338. PMID 34411451 DOI: 10.1002/biot.202000338   
2021 Zheng LL, Li JZ, Li YX, Gao JB, Dong JX, Gao ZF. pH-Responsive DNA Motif: From Rational Design to Analytical Applications. Frontiers in Chemistry. 9: 732770. PMID 34458239 DOI: 10.3389/fchem.2021.732770   
2021 Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. PMID 34352078 DOI: 10.1093/nar/gkab641   
2021 Gao X, Hong Y, Ye F, Inman JT, Wang MD. Torsional Stiffness of Extended and Plectonemic DNA. Physical Review Letters. 127: 028101. PMID 34296898 DOI: 10.1103/PhysRevLett.127.028101   
2021 Dai Z, Li J, Lin Y, Wang Z, Huang Y. Facile Construction of a Solely-DNA-Based System for Targeted Delivery of Nucleic Acids. Nanomaterials (Basel, Switzerland). 11. PMID 34443796 DOI: 10.3390/nano11081967   
2021 Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000   
2021 Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000   
2021 Tse DH, Becker NA, Young RT, Olson WK, Peters JP, Schwab TL, Clark KJ, Maher LJ. Designed architectural proteins that tune DNA looping in bacteria. Nucleic Acids Research. PMID 34478548 DOI: 10.1093/nar/gkab759   
2021 Serrano-Chacón I, Mir B, Escaja N, González C. Structure of i-Motif/Duplex Junctions at Neutral pH. Journal of the American Chemical Society. PMID 34370473 DOI: 10.1021/jacs.1c04679   
2021 Branzei D, Szakal B. DNA helicases in homologous recombination repair. Current Opinion in Genetics & Development. 71: 27-33. PMID 34271541 DOI: 10.1016/j.gde.2021.06.009   
2021 Brugger C, Deaconescu AM. A Gel-Based Assay for Probing Protein Translocation on dsDNA. Bio-Protocol. 11: e4094. PMID 34395731 DOI: 10.21769/BioProtoc.4094   
2021 Dai Y, Yuan BF, Feng YQ. Quantification and mapping of DNA modifications. Rsc Chemical Biology. 2: 1096-1114. PMID 34458826 DOI: 10.1039/d1cb00022e   
2021 Zhang J, Ghadermarzi S, Katuwawala A, Kurgan L. DNAgenie: accurate prediction of DNA-type-specific binding residues in protein sequences. Briefings in Bioinformatics. PMID 34415020 DOI: 10.1093/bib/bbab336   
2021 Green MR, Sambrook J. A Guide to Cloning the Products of Polymerase Chain Reactions. Cold Spring Harbor Protocols. 2021: pdb.top101345. PMID 34470865 DOI: 10.1101/pdb.top101345   
2021 Kim CJ, Kim GH, Jeong EH, Lee H, Park SJ. The core composition of DNA block copolymer micelles dictates DNA hybridization properties, nuclease stabilities, and cellular uptake efficiencies. Nanoscale. 13: 13758-13763. PMID 34477650 DOI: 10.1039/d1nr00756d   
2021 Wang GA, Xu J, Traynor SM, Chen H, Eljabu F, Wu X, Yan H, Li F. DNA Balance for Native Characterization of Chemically Modified DNA. Journal of the American Chemical Society. PMID 34404208 DOI: 10.1021/jacs.1c05236   
2021 Soda N, Gonzaga ZJ, Pannu AS, Kashaninejad N, Kline R, Salomon C, Nguyen NT, Sonar P, Rehm BHA, Shiddiky MJA. Electrochemical Detection of Global DNA Methylation Using Biologically Assembled Polymer Beads. Cancers. 13. PMID 34359688 DOI: 10.3390/cancers13153787   
2021 Parker AV, Mann D, Tzokov SB, Hwang LC, Bergeron JRC. The structure of the bacterial DNA segregation ATPase filament reveals the conformational plasticity of ParA upon DNA binding. Nature Communications. 12: 5166. PMID 34453062 DOI: 10.1038/s41467-021-25429-2   
2021 Pan Q, Wang L, Liu Y, Li M, Zhang Y, Peng W, Deng T, Peng ML, Jiang JQ, Tang J, Wang J, Duan HX, Fan SS. Knockdown of POLQ interferes the development and progression of hepatocellular carcinoma through regulating cell proliferation, apoptosis and migration. Cancer Cell International. 21: 482. PMID 34517891 DOI: 10.1186/s12935-021-02178-2   
2021 Clarke RS, Ha KP, Edwards AM. RexAB promotes the survival of exposed to multiple classes of antibiotics. Antimicrobial Agents and Chemotherapy. AAC0059421. PMID 34310219 DOI: 10.1128/AAC.00594-21   
2021 Ueno H, Sawada H, Soga N, Sano M, Nara S, Tabata KV, Su'etsugu M, Noji H. Amplification of over 100 kbp DNA from Single Template Molecules in Femtoliter Droplets. Acs Synthetic Biology. PMID 34406762 DOI: 10.1021/acssynbio.0c00584   
2021 Gerodimos CA, Watanabe G, Lieber MR. Nonhomologous DNA end joining of nucleosomal substrates in a purified system. Dna Repair. 106: 103193. PMID 34339948 DOI: 10.1016/j.dnarep.2021.103193   
2021 Xiao R, Wang S, Han R, Li Z, Gabel C, Mukherjee IA, Chang L. Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition. Molecular Cell. PMID 34450043 DOI: 10.1016/j.molcel.2021.07.043   
2021 Lin T, Zhang L, Wu M, Jiang D, Li Z, Yang Z. Repair of Hypoxanthine in DNA Revealed by DNA Glycosylases and Endonucleases From Hyperthermophilic Archaea. Frontiers in Microbiology. 12: 736915. PMID 34531846 DOI: 10.3389/fmicb.2021.736915   
2021 Berger M, Wortmann L, Buchgraber P, Lücking U, Zitzmann-Kolbe S, Wengner AM, Bader B, Bömer U, Briem H, Eis K, Rehwinkel H, Bartels F, Moosmayer D, Eberspächer U, Lienau P, et al. BAY-8400: A Novel Potent and Selective DNA-PK Inhibitor which Shows Synergistic Efficacy in Combination with Targeted Alpha Therapies. Journal of Medicinal Chemistry. PMID 34428039 DOI: 10.1021/acs.jmedchem.1c00762   
2021 Hur JY, Lee KY. Characteristics and Clinical Application of Extracellular Vesicle-Derived DNA. Cancers. 13. PMID 34359729 DOI: 10.3390/cancers13153827   
2021 Pal C, Varma S, Majumder S. Oxygen vacancy assisted condensation of DNA molecule observed on ZnO thin film. Biophysical Chemistry. 277: 106659. PMID 34340002 DOI: 10.1016/j.bpc.2021.106659   
2021 Wee WA, Yum JH, Hirashima S, Sugiyama H, Park S. Synthesis and application of a F-labeled fluorescent nucleoside as a dual-mode probe for i-motif DNAs. Rsc Chemical Biology. 2: 876-882. PMID 34458815 DOI: 10.1039/d1cb00020a   
2021 Kamagata K, Itoh Y, Tan C, Mano E, Wu Y, Mandali S, Takada S, Johnson RC. Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo. Nucleic Acids Research. PMID 34352099 DOI: 10.1093/nar/gkab658   
2021 Xiaoru L, Ling G. Combinatorial constraint coding based on the EORS algorithm in DNA storage. Plos One. 16: e0255376. PMID 34324571 DOI: 10.1371/journal.pone.0255376   
2021 Newton MD, Fairbanks SD, Thomas JA, Rueda DS. A Minimal Load-and-Lock Ru Luminescent DNA Probe. Angewandte Chemie (International Ed. in English). PMID 34378843 DOI: 10.1002/anie.202108077   
2021 Favalli N, Bassi G, Bianchi D, Scheuermann J, Neri D. Large screening of DNA-compatible reaction conditions for Suzuki and Sonogashira cross-coupling reactions and for reverse amide bond formation. Bioorganic & Medicinal Chemistry. 41: 116206. PMID 34038862 DOI: 10.1016/j.bmc.2021.116206   
2021 Swenson CS, Lackey HH, Reece EJ, Harris JM, Heemstra JM, Peterson EM. Evaluating the effect of ionic strength on PNA:DNA duplex formation kinetics. Rsc Chemical Biology. 2: 1249-1256. PMID 34458838 DOI: 10.1039/d1cb00025j   
2021 Jia Z, Tu K, Xu Q, Gao W, Liu C, Fang B, Zhang M. A novel disease-associated nucleic acid sensing platform based on split DNA-scaffolded sliver nanocluster. Analytica Chimica Acta. 1175: 338734. PMID 34330446 DOI: 10.1016/j.aca.2021.338734   
2021 Ngo LP, Kaushal S, Chaim IA, Mazzucato P, Ricciardi C, Samson LD, Nagel ZD, Engelward BP. CometChip analysis of human primary lymphocytes enables quantification of inter-individual differences in the kinetics of repair of DNA oxidation damage. Free Radical Biology & Medicine. PMID 34324980 DOI: 10.1016/j.freeradbiomed.2021.07.033