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Franklin A. Hays - Related publications

Biochemistry and Molecular Biology University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States 
Mechanisms of anticancer drug efficacy and transport; membrane protein expression, purification, crystallization, and functional analysis
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Chataigner LMP, Leloup N, Janssen BJC. Structural Perspectives on Extracellular Recognition and Conformational Changes of Several Type-I Transmembrane Receptors. Frontiers in Molecular Biosciences. 7: 129. PMID 32850948 DOI: 10.3389/fmolb.2020.00129   
2020 Singh R, Deshmukh S, Kumar A, Goyal VD, Makde RD. Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase. Acta Crystallographica. Section F, Structural Biology Communications. 76: 488-494. PMID 33006577 DOI: 10.1107/S2053230X20011875   
2020 Maksimov EG, Laptev GY, Blokhin DS, Klochkov VV, Slonimskiy YB, Sluchanko NN, Friedrich T, Chang CF, Polshakov VI. NMR resonance assignment and backbone dynamics of a C-terminal domain homolog of orange carotenoid protein. Biomolecular Nmr Assignments. PMID 32939684 DOI: 10.1007/s12104-020-09976-1   
2020 Plaks JG, Brewer JA, Jacobsen NK, McKenna M, Uzarski JR, Lawton TJ, Filocamo SF, Kaar JL. Rosetta-enabled Structural Prediction of Permissive Loop Insertion Sites in Proteins. Biochemistry. PMID 32970423 DOI: 10.1021/acs.biochem.0c00533   
2020 Ryzhov P, Tian Y, Yao Y, Bobkov AA, Im W, Marassi FM. Conformational States of the Cytoprotective Protein Bcl-xL. Biophysical Journal. PMID 32888404 DOI: 10.1016/j.bpj.2020.08.014   
2020 Kaur N, Sagar A, Sharma P, Ashish, Pati PK. Structural insights into rice SalTol QTL located SALT protein. Scientific Reports. 10: 16589. PMID 33024209 DOI: 10.1038/s41598-020-73517-y   
2020 Stojanovski BM, Pelc LA, Zuo X, Di Cera E. Zymogen and activated protein C have similar structural architecture. The Journal of Biological Chemistry. PMID 32855236 DOI: 10.1074/jbc.RA120.014789   
2020 Zhao Y, Zhao Y, Peng B, Zhang L. Dynamic behavior of biomaterials uncovered by cryo-electron microscopy. Combinatorial Chemistry & High Throughput Screening. PMID 33019925 DOI: 10.2174/1386207323666201005100653   
2020 Fan C, Rees DC. Crystal structure of the Escherichia coli transcription termination factor Rho. Acta Crystallographica. Section F, Structural Biology Communications. 76: 398-405. PMID 32880587 DOI: 10.1107/S2053230X20010572   
2020 Clark JJ, Orban ZJ, Carlson HA. Predicting binding sites from unbound versus bound protein structures. Scientific Reports. 10: 15856. PMID 32985584 DOI: 10.1038/s41598-020-72906-7   
2020 Gosu V, Shin D, Song KD, Heo J, Oh JD. Molecular modeling and dynamic simulation of chicken Mx protein with the S631N polymorphism. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 32962555 DOI: 10.1080/07391102.2020.1819419   
2020 Liu Q, He QT, Lyu X, Yang F, Zhu ZL, Xiao P, Yang Z, Zhang F, Yang ZY, Wang XY, Sun P, Wang QW, Qu CX, Gong Z, Lin JY, et al. DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl H-NMR probe. Nature Communications. 11: 4857. PMID 32978402 DOI: 10.1038/s41467-020-18433-5   
2020 Ekka M, Mondal A, Singh R, Sen H, Datta S, Raychaudhuri S. Arginine 37 of Glycine Linker Dictates Regulatory Function of HapR. Frontiers in Microbiology. 11: 1949. PMID 32973706 DOI: 10.3389/fmicb.2020.01949   
2020 Lokareddy RK, Ko YH, Hong N, Doll SG, Paduch M, Niederweis M, Kossiakoff AA, Cingolani G. Recognition of an α-helical hairpin in P22 large terminase by a synthetic antibody fragment. Acta Crystallographica. Section D, Structural Biology. 76: 876-888. PMID 32876063 DOI: 10.1107/S2059798320009912   
2020 Falke S, Feiler C, Chapman H, Sarrou I. Crystal structures of native cytochrome c from Thermosynechococcus elongatus in two different space groups and implications for its oligomerization. Acta Crystallographica. Section F, Structural Biology Communications. 76: 444-452. PMID 32880593 DOI: 10.1107/S2053230X20010249   
2020 Boldridge M, Shimabukuro J, Nakamatsu K, Won C, Jansen C, Turner H, Wang L. Characterization of the C-terminal tail of the Arc protein. Plos One. 15: e0239870. PMID 32991626 DOI: 10.1371/journal.pone.0239870   
2020 Hinostroza F, Neely A, Araya-Duran I, Marabolí V, Canan J, Rojas M, Aguayo D, Latorre R, González-Nilo FD, Cárdenas AM. Dynamin-2 R465W mutation induces long range perturbation in highly ordered oligomeric structures. Scientific Reports. 10: 18151. PMID 33097808 DOI: 10.1038/s41598-020-75216-0   
2020 Bhunia SS, Saxena AK. Efficiency of Homology Modeling assisted Molecular Docking in G-protein coupled receptors. Current Topics in Medicinal Chemistry. PMID 32901584 DOI: 10.2174/1568026620666200908165250   
2020 Tsuji T, Yoshinaga S, Takeda M, Sato T, Sonoda A, Ishida N, Yunoki K, Toda E, Terashima Y, Matsushima K, Terasawa H. Rational design of monodispersed mutants of proteins by identifying aggregation contact sites using solubilizing agents. Biochemistry. PMID 32929969 DOI: 10.1021/acs.biochem.0c00414   
2020 Sharma V, Shing B, Hernandez-Alvarez L, Debnath A, Podust LM. . Molecular Pharmacology. PMID 33008918 DOI: 10.1124/molpharm.120.000092   
2020 Nyenhuis DA, Nilaweera TD, Cafiso DS. Native Cell Environment Constrains Loop Structure in the Escherichia coli Cobalamin Transporter BtuB. Biophysical Journal. 119: 1550-1557. PMID 32946767 DOI: 10.1016/j.bpj.2020.08.034   
2020 Henderson JN, Simmons CR, Fahmi NE, Jeffs JW, Borges CR, Mills JH. Structural insights into how protein environments tune the spectroscopic properties of a non-canonical amino acid fluorophore. Biochemistry. PMID 32845612 DOI: 10.1021/acs.biochem.0c00474   
2020 Aoki-Shioi N, Jobichen C, Sivaraman J, Kini RM. Unusual quaternary structure of a homodimeric synergistic-type toxin from mamba snake venom defines its molecular evolution. The Biochemical Journal. PMID 33000863 DOI: 10.1042/BCJ20200529   
2020 Croll T, Diederichs K, Fischer F, Fyfe C, Gao Y, Horrell S, Joseph AP, Kandler L, Kippes O, Kirsten F, Müller K, Nolte K, Payne A, Reeves MG, Richardson J, et al. Making the invisible enemy visible. Biorxiv : the Preprint Server For Biology. PMID 33052340 DOI: 10.1101/2020.10.07.307546   
2020 Agarwal S, Smith M, De La Rosa I, Verba KA, Swartz P, Segura-Totten M, Mattos C. Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. Acta Crystallographica. Section D, Structural Biology. 76: 1001-1014. PMID 33021502 DOI: 10.1107/S2059798320011341   
2020 Jones P, George AM. Is the Emperor Wearing Shorts? The Published Structures of ABC transporters. Febs Letters. PMID 32981041 DOI: 10.1002/1873-3468.13941   
2020 Bu G, Simmons CR, Nielsen DR, Nannenga BL. Tetragonal crystal form of the cyanobacterial bicarbonate-transporter regulator SbtB from Synechocystis sp. PCC 6803. Acta Crystallographica. Section F, Structural Biology Communications. 76: 438-443. PMID 32880592 DOI: 10.1107/S2053230X20010523   
2020 Shekhar N, Sarma P, Prajapat M, Avti P, Kaur H, Raja A, Singh H, Bhattacharya A, Sharma S, Kumar S, Prakash A, Medhi B. Structure-Based Repositioning of Approved Drugs for Spike Glycoprotein S2 Domain Fusion Peptide of SARS-CoV-2: Rationale from Molecular Dynamics and Binding Free Energy Calculations. Msystems. 5. PMID 32963099 DOI: 10.1128/mSystems.00382-20   
2020 Staby L, Kemplen KR, Stein A, Ploug M, Clarke J, Skriver K, Heidarsson PO, Kragelund BB. Disorder in a two-domain neuronal Ca-binding protein regulates domain stability and dynamics using ligand mimicry. Cellular and Molecular Life Sciences : Cmls. PMID 32936312 DOI: 10.1007/s00018-020-03639-z   
2020 Neira JL, Rizzuti B, Jiménez-Alesanco A, Palomino-Schätzlein M, Abián O, Velázquez-Campoy A, Iovanna JL. A Phosphorylation-Induced Switch in the Nuclear Localization Sequence of the Intrinsically Disordered NUPR1 Hampers Binding to Importin. Biomolecules. 10. PMID 32933064 DOI: 10.3390/biom10091313   
2020 Shakya AK, Pratap JV. The coiled-coil domain of glycosomal membrane-associated Leishmania donovani PEX14: cloning, overexpression, purification and preliminary crystallographic analysis. Acta Crystallographica. Section F, Structural Biology Communications. 76: 464-468. PMID 33006573 DOI: 10.1107/S2053230X20011127   
2020 Pacheco S, Quiliche JPJ, Gómez I, Sánchez J, Soberón M, Bravo A. Rearrangement of N-Terminal α-Helices of Cry1Ab Toxin Essential for Oligomer Assembly and Toxicity. Toxins. 12. PMID 33049917 DOI: 10.3390/toxins12100647   
2020 Kim GE, Lee SY, Park HH. A high-resolution (1.2 Å) crystal structure of the anti-CRISPR protein AcrIF9. Febs Open Bio. PMID 32990416 DOI: 10.1002/2211-5463.12986   
2020 Xu C, Lu P, Gamal El-Din TM, Pei XY, Johnson MC, Uyeda A, Bick MJ, Xu Q, Jiang D, Bai H, Reggiano G, Hsia Y, Brunette TJ, Dou J, Ma D, et al. Computational design of transmembrane pores. Nature. PMID 32848250 DOI: 10.1038/s41586-020-2646-5   
2020 Gutiérrez A, Ferreira GM, Machuca J, Venthur H, Feres F, Hirata MH, Hirata RDC, Cerda A. Characterization of the adipogenic protein E4orf1 from adenovirus 36 through an in silico approach. Journal of Molecular Modeling. 26: 285. PMID 32978703 DOI: 10.1007/s00894-020-04531-0   
2020 Vattepu R, Klausmeyer RA, Ayella A, Yadav R, Dille JT, Saiz SV, Beck MR. Conserved tryptophan mutation disrupts structure and function of immunoglobulin domain revealing unusual tyrosine fluorescence. Protein Science : a Publication of the Protein Society. PMID 32797644 DOI: 10.1002/pro.3929   
2020 Dominguez-Martin MA, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg DJ, Chen Y, Petzold CJ, Ralston CY, Polívka T, Kerfeld CA. Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. Scientific Reports. 10: 15564. PMID 32968135 DOI: 10.1038/s41598-020-72383-y   
2020 Sánchez Rodríguez F, Simpkin AJ, Davies OR, Keegan RM, Rigden DJ. Helical ensembles outperform ideal helices in molecular replacement. Acta Crystallographica. Section D, Structural Biology. 76: 962-970. PMID 33021498 DOI: 10.1107/S205979832001133X   
2020 Barozet A, Bianciotto M, Vaisset M, Siméon T, Minoux H, Cortés J. Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods. Proteins. PMID 32920900 DOI: 10.1002/prot.26008   
2020 Chen SK, Guan HH, Wu PH, Lin LT, Wu MC, Chang HY, Chen NC, Lin CC, Chuankhayan P, Huang YC, Lin PJ, Chen CJ. Structural insights into the histidine-containing phospho-transfer protein and receiver domain of sensor histidine kinase suggest a complex model in the two-component regulatory system in . Iucrj. 7: 934-948. PMID 32939285 DOI: 10.1107/S2052252520009665   
2020 Sindhikara D, Wagner M, Gkeka P, Güssregen S, Tiwari G, Hessler G, Yapici E, Li Z, Evers A. Automated Design of Macrocycles for Therapeutic Applications: From Small Molecules to Peptides and Proteins. Journal of Medicinal Chemistry. PMID 33017535 DOI: 10.1021/acs.jmedchem.0c01500   
2020 Plaza-Garrido M, Salinas-Garcia MC, Alba-Elena D, Martínez JC, Camara-Artigas A. Lysozyme crystals dyed with bromophenol blue: where has the dye gone? Acta Crystallographica. Section D, Structural Biology. 76: 845-856. PMID 32876060 DOI: 10.1107/S2059798320008803   
2020 Kadkhodayi-Kholghi N, Bhatt JS, Gor J, McDermott LC, Gale DP, Perkins SJ. The solution structure of the complement deregulator FHR5 reveals a compact dimer and provides new insights into CFHR5 nephropathy. The Journal of Biological Chemistry. PMID 32928961 DOI: 10.1074/jbc.RA120.015132   
2020 Di Lena P, Baldi P. Fold recognition by scoring protein maps using the congruence coefficient. Bioinformatics (Oxford, England). PMID 32976564 DOI: 10.1093/bioinformatics/btaa833   
2020 Dijkman PM, Muñoz-García JC, Lavington SR, Kumagai PS, Dos Reis RI, Yin D, Stansfeld PJ, Costa-Filho AJ, Watts A. Conformational dynamics of a G protein-coupled receptor helix 8 in lipid membranes. Science Advances. 6: eaav8207. PMID 32851152 DOI: 10.1126/sciadv.aav8207   
2020 Sala BM, Le Marchand T, Pintacuda G, Camilloni C, Natalello A, Ricagno S. Conformational Stability and Dynamics in Crystals Recapitulate Protein Behavior in Solution. Biophysical Journal. 119: 978-988. PMID 32758421 DOI: 10.1016/j.bpj.2020.07.015   
2020 Chen W, Yao C, Guo Y, Wang Y, Xue Z. pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP. Bmc Bioinformatics. 21: 426. PMID 32993484 DOI: 10.1186/s12859-020-03757-2   
2020 Mi T, Burgess K. Striking Similarities between CDRs in Some mAbs That Neutralize COVID-19. Acs Medicinal Chemistry Letters. 11: 1663-1666. PMID 32934769 DOI: 10.1021/acsmedchemlett.0c00409   
2020 Kim J, Kim D, Cheon CI, Kim S. Modeling-based identification of a Raptor-binding motif present in Arabidopsis ABA receptor PYL1. Biochemical and Biophysical Research Communications. PMID 33070969 DOI: 10.1016/j.bbrc.2020.10.009   
2020 He F, Endo R, Kuwasako K, Takahashi M, Tsuda K, Nagata T, Watanabe S, Tanaka A, Kobayashi N, Kigawa T, Güntert P, Shirouzu M, Yokoyama S, Muto Y. H, C and N resonance assignment of the YTH domain of YTHDC2. Biomolecular Nmr Assignments. PMID 32930954 DOI: 10.1007/s12104-020-09974-3