| Year |
Citation |
Score |
| 2024 |
Guca E, Alarcon R, Palo MZ, Santos L, Alonso-Gil S, Davyt M, de Lima LHF, Boissier F, Das S, Zagrovic B, Puglisi JD, Hashem Y, Ignatova Z. N-methyladenosine in 5' UTR does not promote translation initiation. Molecular Cell. PMID 38244546 DOI: 10.1016/j.molcel.2023.12.028 |
0.303 |
|
| 2023 |
Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Bäumlin E, Kummerant E, Scaiola A, Schönhut T, Ziegelmüller J, Puglisi JD, Mühlemann O, Ban N. Universal features of Nsp1-mediated translational shutdown by coronaviruses. Molecular Cell. 83: 3546-3557.e8. PMID 37802027 DOI: 10.1016/j.molcel.2023.09.002 |
0.328 |
|
| 2023 |
Huang T, Choi J, Prabhakar A, Puglisi JD, Petrov A. Partial spontaneous intersubunit rotations in pretranslocation ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2114979120. PMID 37801472 DOI: 10.1073/pnas.2114979120 |
0.545 |
|
| 2023 |
Nouhin J, Tzou PL, Rhee SY, Sahoo MK, Pinsky BA, Krupkin M, Puglisi JD, Puglisi EV, Shafer RW. Human immunodeficiency virus 1 5'-leader mutations in plasma viruses before and after the development of reverse transcriptase inhibitor-resistance mutations. The Journal of General Virology. 104. PMID 37801004 DOI: 10.1099/jgv.0.001898 |
0.773 |
|
| 2023 |
Wang J, Koduru T, Harish B, McCallum SA, Larsen KP, Patel KS, Peters EV, Gillilan RE, Puglisi EV, Puglisi JD, Makhatadze G, Royer CA. Pressure pushes tRNA into excited conformational states. Proceedings of the National Academy of Sciences of the United States of America. 120: e2215556120. PMID 37339210 DOI: 10.1073/pnas.2215556120 |
0.741 |
|
| 2023 |
Nouhin J, Tzou P, Rhee SY, Sahoo MK, Pinsky BA, Krupkin MA, Puglisi JD, Puglisi EV, Shafer RW. HIV-1 5'-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations. Medrxiv : the Preprint Server For Health Sciences. PMID 37333388 DOI: 10.1101/2023.06.04.23290942 |
0.773 |
|
| 2022 |
Wang J, Shin BS, Alvarado C, Kim JR, Bohlen J, Dever TE, Puglisi JD. Rapid 40S scanning and its regulation by mRNA structure during eukaryotic translation initiation. Cell. 185: 4474-4487.e17. PMID 36334590 DOI: 10.1016/j.cell.2022.10.005 |
0.403 |
|
| 2022 |
Prabhakar A, Krahn N, Zhang J, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnković A, Ehrenberg M, Puglisi EV, Söll D, Puglisi J. Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Research. PMID 35882385 DOI: 10.1093/nar/gkac576 |
0.805 |
|
| 2022 |
Lapointe CP, Grosely R, Sokabe M, Alvarado C, Wang J, Montabana E, Villa N, Shin BS, Dever TE, Fraser CS, Fernández IS, Puglisi JD. eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining. Nature. PMID 35732735 DOI: 10.1038/s41586-022-04858-z |
0.408 |
|
| 2021 |
Lawson MR, Lessen LN, Wang J, Prabhakar A, Corsepius NC, Green R, Puglisi JD. Mechanisms that ensure speed and fidelity in eukaryotic translation termination. Science (New York, N.Y.). 373: 876-882. PMID 34413231 DOI: 10.1126/science.abi7801 |
0.327 |
|
| 2021 |
Lapointe CP, Grosely R, Johnson AG, Wang J, Fernández IS, Puglisi JD. Dynamic competition between SARS-CoV-2 NSP1 and mRNA on the human ribosome inhibits translation initiation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33479166 DOI: 10.1073/pnas.2017715118 |
0.328 |
|
| 2020 |
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernández IS. Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex. Nature Communications. 11: 5003. PMID 33024099 DOI: 10.1038/s41467-020-18829-3 |
0.423 |
|
| 2020 |
Choi J, O'Loughlin S, Atkins JF, Puglisi JD. The energy landscape of -1 ribosomal frameshifting. Science Advances. 6: eaax6969. PMID 31911945 DOI: 10.1126/sciadv.aax6969 |
0.337 |
|
| 2020 |
Duss O, Stepanyuk GA, Puglisi JD, Williamson JR. Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding Biophysical Journal. 118: 334a. DOI: 10.1016/j.bpj.2019.11.1863 |
0.583 |
|
| 2019 |
Chandrasekaran V, Juszkiewicz S, Choi J, Puglisi JD, Brown A, Shao S, Ramakrishnan V, Hegde RS. Mechanism of ribosome stalling during translation of a poly(A) tail. Nature Structural & Molecular Biology. PMID 31768042 DOI: 10.1038/S41594-019-0331-X |
0.384 |
|
| 2019 |
Duss O, Stepanyuk GA, Puglisi JD, Williamson JR. Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding. Cell. 179: 1357-1369.e16. PMID 31761533 DOI: 10.1016/J.Bpj.2019.11.1863 |
0.609 |
|
| 2019 |
Wang J, Johnson AG, Lapointe CP, Choi J, Prabhakar A, Chen DH, Petrov AN, Puglisi JD. eIF5B gates the transition from translation initiation to elongation. Nature. PMID 31534220 DOI: 10.1038/s41586-019-1561-0 |
0.577 |
|
| 2019 |
Larsen KP, Choi J, Prabhakar A, Puglisi EV, Puglisi JD. Relating Structure and Dynamics in RNA Biology. Cold Spring Harbor Perspectives in Biology. 11. PMID 31262948 DOI: 10.1101/Cshperspect.A032474 |
0.769 |
|
| 2019 |
Choi J, Grosely R, Puglisi EV, Puglisi JD. Expanding single-molecule fluorescence spectroscopy to capture complexity in biology. Current Opinion in Structural Biology. PMID 31213390 DOI: 10.1016/J.Sbi.2019.05.005 |
0.703 |
|
| 2019 |
Johnson AG, Lapointe CP, Wang J, Corsepius NC, Choi J, Fuchs G, Puglisi JD. RACK1 on and off the ribosome. Rna (New York, N.Y.). PMID 31023766 DOI: 10.1261/rna.071217.119 |
0.311 |
|
| 2018 |
Duss O, Stepanyuk GA, Grot A, O'Leary SE, Puglisi JD, Williamson JR. Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts. Nature Communications. 9: 5087. PMID 30504830 DOI: 10.1038/S41467-018-07423-3 |
0.586 |
|
| 2018 |
Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R. De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes. Nature Methods. 15: 947-954. PMID 30377372 DOI: 10.1038/S41592-018-0172-2 |
0.728 |
|
| 2018 |
Coey AT, Larsen KP, Choi J, Barrero DJ, Puglisi JD, Puglisi EV. Dynamic Interplay of RNA and Protein in the Human Immunodeficiency Virus-1 Reverse Transcription Initiation Complex. Journal of Molecular Biology. PMID 30201267 DOI: 10.1016/J.Jmb.2018.08.029 |
0.756 |
|
| 2018 |
Choi J, Grosely R, Prabhakar A, Lapointe CP, Wang J, Puglisi JD. How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation. Annual Review of Biochemistry. 87: 421-449. PMID 29925264 DOI: 10.1146/annurev-biochem-060815-014818 |
0.301 |
|
| 2018 |
Prabhakar A, Puglisi EV, Puglisi JD. Single-Molecule Fluorescence Applied to Translation. Cold Spring Harbor Perspectives in Biology. PMID 29891562 DOI: 10.1101/Cshperspect.A032714 |
0.73 |
|
| 2018 |
Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV. Architecture of an HIV-1 reverse transcriptase initiation complex. Nature. PMID 29695867 DOI: 10.1038/S41586-018-0055-9 |
0.764 |
|
| 2018 |
Choi J, Indrisiunaite G, DeMirci H, Ieong KW, Wang J, Petrov A, Prabhakar A, Rechavi G, Dominissini D, He C, Ehrenberg M, Puglisi JD. 2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation. Nature Structural & Molecular Biology. PMID 29459784 DOI: 10.1038/S41594-018-0030-Z |
0.549 |
|
| 2018 |
Lapointe C, Puglisi J. Ribosomal Protein Dynamics on the Human Ribosome Biophysical Journal. 114: 595a. DOI: 10.1016/J.Bpj.2017.11.3254 |
0.312 |
|
| 2018 |
Grosely R, Puglisi J. Mechanistic Insight into the Initiation of Repeat-Associated Nonaug Translation Biophysical Journal. 114: 395a. DOI: 10.1016/J.Bpj.2017.11.2187 |
0.313 |
|
| 2018 |
Larsen K, Mathiharan Y, Kappel K, Coey A, Chen D, Madigan L, Skiniotis G, Puglisi J, Viani Puglisi E. Structural Characterization of the HIV-1 Reverse Transcriptase Initiation Complex Biophysical Journal. 114: 193a. DOI: 10.1016/J.Bpj.2017.11.1080 |
0.307 |
|
| 2017 |
Choi J, Puglisi JD. Three tRNAs on the ribosome slow translation elongation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229848 DOI: 10.1073/pnas.1719592115 |
0.332 |
|
| 2017 |
Johnson AG, Petrov AN, Fuchs G, Majzoub K, Grosely R, Choi J, Puglisi JD. Fluorescently-tagged human eIF3 for single-molecule spectroscopy. Nucleic Acids Research. PMID 29136179 DOI: 10.1093/nar/gkx1050 |
0.599 |
|
| 2017 |
Prabhakar A, Capece MC, Petrov A, Choi J, Puglisi JD. Post-termination Ribosome Intermediate Acts as the Gateway to Ribosome Recycling. Cell Reports. 20: 161-172. PMID 28683310 DOI: 10.1016/J.Celrep.2017.06.028 |
0.56 |
|
| 2017 |
Prabhakar A, Choi J, Wang J, Petrov A, Puglisi JD. Dynamic basis of fidelity and speed in translation: Coordinated multi-step mechanisms of elongation and termination. Protein Science : a Publication of the Protein Society. PMID 28480640 DOI: 10.1002/Pro.3190 |
0.585 |
|
| 2017 |
Johnson AG, Grosely R, Petrov AN, Puglisi JD. Dynamics of IRES-mediated translation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138065 DOI: 10.1098/rstb.2016.0177 |
0.614 |
|
| 2016 |
Chen J, Choi J, O'Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD. The molecular choreography of protein synthesis: translational control, regulation, and pathways. Quarterly Reviews of Biophysics. 49: e11. PMID 27658712 DOI: 10.1017/S0033583516000056 |
0.761 |
|
| 2016 |
Coey A, Larsen K, Puglisi JD, Puglisi EV. Heterogeneous structures formed by conserved RNA sequences within the HIV reverse transcription initiation site. Rna (New York, N.Y.). PMID 27613581 DOI: 10.1261/Rna.056804.116 |
0.769 |
|
| 2016 |
Navon SP, Kornberg G, Chen J, Schwartzman T, Tsai A, Puglisi EV, Puglisi JD, Adir N. Amino acid sequence repertoire of the bacterial proteome and the occurrence of untranslatable sequences. Proceedings of the National Academy of Sciences of the United States of America. PMID 27307442 DOI: 10.1073/Pnas.1606518113 |
0.699 |
|
| 2016 |
Petrov A, Grosely R, Chen J, O'Leary SE, Puglisi JD. Multiple Parallel Pathways of Translation Initiation on the CrPV IRES. Molecular Cell. 62: 92-103. PMID 27058789 DOI: 10.1016/J.Molcel.2016.03.020 |
0.585 |
|
| 2016 |
Tsai A, Puglisi JD, Uemura S. Probing the Translation Dynamics of Ribosomes Using Zero-Mode Waveguides. Progress in Molecular Biology and Translational Science. 139: 1-43. PMID 26970189 DOI: 10.1016/bs.pmbts.2015.10.006 |
0.307 |
|
| 2016 |
Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD. N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nature Structural & Molecular Biology. PMID 26751643 DOI: 10.1038/Nsmb.3148 |
0.547 |
|
| 2015 |
Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, ... ... Puglisi JD, et al. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nature Methods. PMID 26619013 DOI: 10.1038/Nmeth.3667 |
0.667 |
|
| 2015 |
Chen J, Coakley A, O'Connor M, Petrov A, O'Leary SE, Atkins JF, Puglisi JD. Coupling of mRNA Structure Rearrangement to Ribosome Movement during Bypassing of Non-coding Regions. Cell. 163: 1267-80. PMID 26590426 DOI: 10.1016/J.Cell.2015.10.064 |
0.578 |
|
| 2015 |
Capece MC, Kornberg GL, Petrov A, Puglisi JD. A simple real-time assay for in vitro translation. Rna (New York, N.Y.). 21: 296-305. PMID 25525154 DOI: 10.1261/Rna.047159.114 |
0.49 |
|
| 2015 |
Fuchs G, Petrov AN, Marceau CD, Popov LM, Chen J, O'Leary SE, Wang R, Carette JE, Sarnow P, Puglisi JD. Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site. Proceedings of the National Academy of Sciences of the United States of America. 112: 319-25. PMID 25516984 DOI: 10.1073/pnas.1421328111 |
0.554 |
|
| 2014 |
Chen J, Petrov A, Johansson M, Tsai A, O'Leary SE, Puglisi JD. Dynamic pathways of -1 translational frameshifting. Nature. 512: 328-32. PMID 24919156 DOI: 10.1038/Nature13428 |
0.619 |
|
| 2014 |
Tsai A, Kornberg G, Johansson M, Chen J, Puglisi JD. The dynamics of SecM-induced translational stalling. Cell Reports. 7: 1521-33. PMID 24836001 DOI: 10.1016/j.celrep.2014.04.033 |
0.316 |
|
| 2014 |
Noriega TR, Tsai A, Elvekrog MM, Petrov A, Neher SB, Chen J, Bradshaw N, Puglisi JD, Walter P. Signal recognition particle-ribosome binding is sensitive to nascent chain length. The Journal of Biological Chemistry. 289: 19294-305. PMID 24808175 DOI: 10.1074/Jbc.M114.563239 |
0.503 |
|
| 2014 |
Chen J, Dalal RV, Petrov AN, Tsai A, O'Leary SE, Chapin K, Cheng J, Ewan M, Hsiung PL, Lundquist P, Turner SW, Hsu DR, Puglisi JD. High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence. Proceedings of the National Academy of Sciences of the United States of America. 111: 664-9. PMID 24379388 DOI: 10.1073/pnas.1315735111 |
0.509 |
|
| 2014 |
Coey A, Mpossi M, Viani-Puglisi E, Puglisi J. RNA Structural Rearrangements during Reverse Transcription Initiation in HIV Biophysical Journal. 106: 281a. DOI: 10.1016/J.Bpj.2013.11.1647 |
0.445 |
|
| 2014 |
Chen J, Petrov A, Johansson M, Tsai A, O'Leary SE, Puglisi JD. Single-Molecule Profiling of Ribosome Translational Phenomena Biophysical Journal. 106: 239a. DOI: 10.1016/J.Bpj.2013.11.1402 |
0.615 |
|
| 2013 |
O'Leary SE, Petrov A, Chen J, Puglisi JD. Dynamic recognition of the mRNA cap by Saccharomyces cerevisiae eIF4E. Structure (London, England : 1993). 21: 2197-207. PMID 24183571 DOI: 10.1016/J.Str.2013.09.016 |
0.577 |
|
| 2013 |
Petrov A, Wu T, Puglisi EV, Puglisi JD. RNA purification by preparative polyacrylamide gel electrophoresis. Methods in Enzymology. 530: 315-30. PMID 24034329 DOI: 10.1016/B978-0-12-420037-1.00017-8 |
0.784 |
|
| 2013 |
Petrov A, Tsa A, Puglisi JD. Analysis of RNA by analytical polyacrylamide gel electrophoresis. Methods in Enzymology. 530: 301-13. PMID 24034328 DOI: 10.1016/B978-0-12-420037-1.00016-6 |
0.606 |
|
| 2013 |
Chen J, Petrov A, Tsai A, O'Leary SE, Puglisi JD. Coordinated conformational and compositional dynamics drive ribosome translocation. Nature Structural & Molecular Biology. 20: 718-27. PMID 23624862 DOI: 10.1038/Nsmb.2567 |
0.559 |
|
| 2013 |
Tsai A, Uemura S, Johansson M, Puglisi EV, Marshall RA, Aitken CE, Korlach J, Ehrenberg M, Puglisi JD. The impact of aminoglycosides on the dynamics of translation elongation. Cell Reports. 3: 497-508. PMID 23416053 DOI: 10.1016/J.Celrep.2013.01.027 |
0.805 |
|
| 2013 |
Puglisi J, Tsai A, Chen J, Kornbeg G, Jonansson M, Petrov A, O'Leary S, Mark C. 1SBP-03 Dynamics of translation elongation in real time(1SBP Advanced Single Molecule Sequencing System,Symposium,The 51th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 53: S87. DOI: 10.2142/Biophys.53.S87_4 |
0.559 |
|
| 2013 |
Tsai A, Chen J, Kornberg G, Korlach J, Uemura S, Puglisi J. Observing Prokaryotic Translation Elongation in Real-Time using Single-Molecule Fluorescence Biophysical Journal. 104: 257a. DOI: 10.1016/J.Bpj.2012.11.1445 |
0.439 |
|
| 2013 |
Puglisi EV, Puglisi JD. Using NMR to determine the conformation of the HIV reverse transcription initiation complex Nato Science For Peace and Security Series B: Physics and Biophysics. 97-119. DOI: 10.1007/978-94-007-4923-8-7 |
0.693 |
|
| 2012 |
Chen J, Tsai A, O'Leary SE, Petrov A, Puglisi JD. Unraveling the dynamics of ribosome translocation. Current Opinion in Structural Biology. 22: 804-14. PMID 23142574 DOI: 10.1016/J.Sbi.2012.09.004 |
0.609 |
|
| 2012 |
Petrov A, Chen J, O'Leary S, Tsai A, Puglisi JD. Single-molecule analysis of translational dynamics. Cold Spring Harbor Perspectives in Biology. 4: a011551. PMID 22798542 DOI: 10.1101/Cshperspect.A011551 |
0.56 |
|
| 2012 |
Tsai A, Petrov A, Marshall RA, Korlach J, Uemura S, Puglisi JD. Heterogeneous pathways and timing of factor departure during translation initiation. Nature. 487: 390-3. PMID 22722848 DOI: 10.1038/Nature11172 |
0.629 |
|
| 2012 |
Puglisi JD, Williamson JR. Digging deep into nucleic acid structure and nucleic acid protein recognition. Current Opinion in Structural Biology. 22: 249-50. PMID 22632873 DOI: 10.1016/J.Sbi.2012.05.003 |
0.434 |
|
| 2012 |
Chen J, Tsai A, Petrov A, Puglisi JD. Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics. Journal of the American Chemical Society. 134: 5734-7. PMID 22428667 DOI: 10.1021/Ja2119964 |
0.548 |
|
| 2012 |
Masuda T, Petrov AN, Iizuka R, Funatsu T, Puglisi JD, Uemura S. Initiation factor 2, tRNA, and 50S subunits cooperatively stabilize mRNAs on the ribosome during initiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 4881-5. PMID 22411833 DOI: 10.1073/pnas.1118452109 |
0.576 |
|
| 2011 |
Puglisi EV, Puglisi JD. Secondary structure of the HIV reverse transcription initiation complex by NMR. Journal of Molecular Biology. 410: 863-74. PMID 21763492 DOI: 10.1016/J.Jmb.2011.04.024 |
0.766 |
|
| 2011 |
Petrov A, Kornberg G, O'Leary S, Tsai A, Uemura S, Puglisi JD. Dynamics of the translational machinery. Current Opinion in Structural Biology. 21: 137-45. PMID 21256733 DOI: 10.1016/J.Sbi.2010.11.007 |
0.584 |
|
| 2010 |
Aitken CE, Puglisi JD. Following the intersubunit conformation of the ribosome during translation in real time. Nature Structural & Molecular Biology. 17: 793-800. PMID 20562856 DOI: 10.1038/Nsmb.1828 |
0.733 |
|
| 2010 |
Puglisi JD, Williamson JR. Nucleic acids continue to surprise. Current Opinion in Structural Biology. 20: 259-61. PMID 20510604 DOI: 10.1016/J.Sbi.2010.04.005 |
0.399 |
|
| 2010 |
Petrov A, Puglisi JD. Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations. Nucleic Acids Research. 38: e143. PMID 20501598 DOI: 10.1093/Nar/Gkq390 |
0.589 |
|
| 2010 |
Uemura S, Aitken CE, Korlach J, Flusberg BA, Turner SW, Puglisi JD. Real-time tRNA transit on single translating ribosomes at codon resolution. Nature. 464: 1012-7. PMID 20393556 DOI: 10.1038/Nature08925 |
0.761 |
|
| 2010 |
Aitken CE, Petrov A, Puglisi JD. Single ribosome dynamics and the mechanism of translation. Annual Review of Biophysics. 39: 491-513. PMID 20192783 DOI: 10.1146/Annurev.Biophys.093008.131427 |
0.774 |
|
| 2010 |
Uemura S, Korlach J, Flusberg B, Turner S, Puglisi JD. Realtime Observation of tRNA Dynamics at High Concentrations in Single Molecule Translation Biophysical Journal. 98: 260a-261a. DOI: 10.1016/J.Bpj.2009.12.1419 |
0.321 |
|
| 2009 |
Marshall RA, Aitken CE, Puglisi JD. GTP hydrolysis by IF2 guides progression of the ribosome into elongation. Molecular Cell. 35: 37-47. PMID 19595714 DOI: 10.1016/J.Molcel.2009.06.008 |
0.729 |
|
| 2008 |
Marshall RA, Dorywalska M, Puglisi JD. Irreversible chemical steps control intersubunit dynamics during translation. Proceedings of the National Academy of Sciences of the United States of America. 105: 15364-9. PMID 18824686 DOI: 10.1073/Pnas.0805299105 |
0.789 |
|
| 2008 |
Marshall RA, Aitken CE, Dorywalska M, Puglisi JD. Translation at the single-molecule level. Annual Review of Biochemistry. 77: 177-203. PMID 18518820 DOI: 10.1146/Annurev.Biochem.77.070606.101431 |
0.791 |
|
| 2008 |
Aitken CE, Marshall RA, Puglisi JD. An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. Biophysical Journal. 94: 1826-35. PMID 17921203 DOI: 10.1529/Biophysj.107.117689 |
0.669 |
|
| 2007 |
McKenna SA, Kim I, Puglisi EV, Lindhout DA, Aitken CE, Marshall RA, Puglisi JD. Purification and characterization of transcribed RNAs using gel filtration chromatography. Nature Protocols. 2: 3270-7. PMID 18079727 DOI: 10.1038/Nprot.2007.480 |
0.815 |
|
| 2007 |
Puglisi EV, Puglisi JD. Probing the conformation of human tRNA(3)(Lys) in solution by NMR. Febs Letters. 581: 5307-14. PMID 17963705 DOI: 10.1016/J.Febslet.2007.10.026 |
0.752 |
|
| 2007 |
Gonzalez RL, Chu S, Puglisi JD. Thiostrepton inhibition of tRNA delivery to the ribosome. Rna (New York, N.Y.). 13: 2091-7. PMID 17951333 DOI: 10.1261/rna.499407 |
0.549 |
|
| 2007 |
Lee TH, Blanchard SC, Kim HD, Puglisi JD, Chu S. The role of fluctuations in tRNA selection by the ribosome. Proceedings of the National Academy of Sciences of the United States of America. 104: 13661-5. PMID 17699629 DOI: 10.1073/Pnas.0705988104 |
0.669 |
|
| 2007 |
Kim HD, Puglisi JD, Chu S. Fluctuations of transfer RNAs between classical and hybrid states. Biophysical Journal. 93: 3575-82. PMID 17693476 DOI: 10.1529/Biophysj.107.109884 |
0.498 |
|
| 2007 |
McKenna SA, Lindhout DA, Shimoike T, Aitken CE, Puglisi JD. Viral dsRNA inhibitors prevent self-association and autophosphorylation of PKR. Journal of Molecular Biology. 372: 103-13. PMID 17619024 DOI: 10.1016/J.Jmb.2007.06.028 |
0.719 |
|
| 2007 |
Uemura S, Dorywalska M, Lee TH, Kim HD, Puglisi JD, Chu S. Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome. Nature. 446: 454-7. PMID 17377584 DOI: 10.1038/Nature05625 |
0.804 |
|
| 2007 |
Kim I, McKenna SA, Viani Puglisi E, Puglisi JD. Rapid purification of RNAs using fast performance liquid chromatography (FPLC). Rna (New York, N.Y.). 13: 289-94. PMID 17179067 DOI: 10.1261/Rna.342607 |
0.332 |
|
| 2007 |
Marshall RA, Puglisi JD. NMR Structural Studies of Aminoglycoside: RNA Interaction Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery. 181-207. DOI: 10.1002/9780470149676.ch5 |
0.346 |
|
| 2006 |
McKenna SA, Kim I, Liu CW, Puglisi JD. Uncoupling of RNA binding and PKR kinase activation by viral inhibitor RNAs. Journal of Molecular Biology. 358: 1270-85. PMID 16580685 DOI: 10.1016/J.Jmb.2006.03.003 |
0.342 |
|
| 2006 |
Kim I, Liu CW, Puglisi JD. Specific recognition of HIV TAR RNA by the dsRNA binding domains (dsRBD1-dsRBD2) of PKR. Journal of Molecular Biology. 358: 430-42. PMID 16516925 DOI: 10.1016/j.jmb.2006.01.099 |
0.377 |
|
| 2006 |
Uemura S, Dorywalska M, Lee T, Kim H, Puglisi J, Chu S. 1P557 Peptide bond formation induces the breakage of Shine-Dalgarno interaction on the ribosome(26. Single molecule biophysics,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S286. DOI: 10.2142/Biophys.46.S286_1 |
0.766 |
|
| 2005 |
Lukavsky PJ, Puglisi JD. Structure determination of large biological RNAs. Methods in Enzymology. 394: 399-416. PMID 15808230 DOI: 10.1016/S0076-6879(05)94016-0 |
0.366 |
|
| 2005 |
Dorywalska M, Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. Site-specific labeling of the ribosome for single-molecule spectroscopy. Nucleic Acids Research. 33: 182-9. PMID 15647501 DOI: 10.1093/Nar/Gki151 |
0.815 |
|
| 2004 |
Otto GA, Puglisi JD. The pathway of HCV IRES-mediated translation initiation. Cell. 119: 369-80. PMID 15507208 DOI: 10.1016/j.cell.2004.09.038 |
0.687 |
|
| 2004 |
Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. tRNA selection and kinetic proofreading in translation. Nature Structural & Molecular Biology. 11: 1008-14. PMID 15448679 DOI: 10.1038/Nsmb831 |
0.665 |
|
| 2004 |
Blanchard SC, Kim HD, Gonzalez RL, Puglisi JD, Chu S. tRNA dynamics on the ribosome during translation. Proceedings of the National Academy of Sciences of the United States of America. 101: 12893-8. PMID 15317937 DOI: 10.1073/Pnas.0403884101 |
0.686 |
|
| 2004 |
Lukavsky PJ, Puglisi JD. Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides. Rna (New York, N.Y.). 10: 889-93. PMID 15100443 DOI: 10.1261/rna.5264804 |
0.352 |
|
| 2003 |
Lukavsky PJ, Kim I, Otto GA, Puglisi JD. Structure of HCV IRES domain II determined by NMR. Nature Structural Biology. 10: 1033-8. PMID 14578934 DOI: 10.1038/nsb1004 |
0.732 |
|
| 2002 |
Kim I, Lukavsky PJ, Puglisi JD. NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling. Journal of the American Chemical Society. 124: 9338-9. PMID 12167005 DOI: 10.1021/ja026647w |
0.372 |
|
| 2002 |
Otto GA, Lukavsky PJ, Lancaster AM, Sarnow P, Puglisi JD. Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction. Rna (New York, N.Y.). 8: 913-23. PMID 12166646 DOI: 10.1017/S1355838202022057 |
0.736 |
|
| 2002 |
Yoshizawa S, Fourmy D, Eason RG, Puglisi JD. Sequence-specific recognition of the major groove of RNA by deoxystreptamine. Biochemistry. 41: 6263-70. PMID 12009887 DOI: 10.1021/bi0121609 |
0.377 |
|
| 2001 |
Puglisi JD, Kim I, Lukavsky P, Otto G, Lancaster A, Sarnow P. Structural and functional investigation of the hepatitis C virus IRES. Nucleic Acids Research. Supplement (2001). 263. PMID 12836365 |
0.655 |
|
| 2001 |
Lukavsky PJ, Puglisi JD. RNAPack: an integrated NMR approach to RNA structure determination. Methods (San Diego, Calif.). 25: 316-32. PMID 11860286 DOI: 10.1006/meth.2001.1244 |
0.368 |
|
| 2001 |
Blanchard SC, Puglisi JD. Solution structure of the A loop of 23S ribosomal RNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 3720-5. PMID 11259644 DOI: 10.1073/Pnas.051608498 |
0.612 |
|
| 2001 |
Lynch SR, Puglisi JD. Structural origins of aminoglycoside specificity for prokaryotic ribosomes. Journal of Molecular Biology. 306: 1037-58. PMID 11237617 DOI: 10.1006/jmbi.2000.4420 |
0.356 |
|
| 2000 |
Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD. Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nature Structural Biology. 7: 1105-10. PMID 11101890 DOI: 10.1038/81951 |
0.74 |
|
| 2000 |
Puglisi JD, Blanchard SC, Green R. Approaching translation at atomic resolution. Nature Structural Biology. 7: 855-61. PMID 11017192 DOI: 10.1038/79603 |
0.638 |
|
| 1999 |
Yoshizawa S, Fourmy D, Puglisi JD. Recognition of the codon-anticodon helix by ribosomal RNA. Science (New York, N.Y.). 285: 1722-5. PMID 10481006 DOI: 10.1126/science.285.5434.1722 |
0.355 |
|
| 1998 |
Puglisi EV, Puglisi JD. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure. Nature Structural Biology. 5: 1033-6. PMID 9846871 DOI: 10.1038/4141 |
0.761 |
|
| 1998 |
Yoshizawa S, Fourmy D, Puglisi JD. Structural origins of gentamicin antibiotic action. The Embo Journal. 17: 6437-48. PMID 9822590 DOI: 10.1093/emboj/17.22.6437 |
0.372 |
|
| 1998 |
Blanchard SC, Fourmy D, Eason RG, Puglisi JD. rRNA chemical groups required for aminoglycoside binding. Biochemistry. 37: 7716-24. PMID 9601031 DOI: 10.1021/Bi973125Y |
0.555 |
|
| 1998 |
Fourmy D, Recht MI, Puglisi JD. Binding of neomycin-class aminoglycoside antibiotics to the A-site of 16 S rRNA. Journal of Molecular Biology. 277: 347-62. PMID 9514735 DOI: 10.1006/jmbi.1997.1552 |
0.349 |
|
| 1998 |
Fourmy D, Yoshizawa S, Puglisi JD. Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA. Journal of Molecular Biology. 277: 333-45. PMID 9514734 DOI: 10.1006/jmbi.1997.1551 |
0.361 |
|
| 1997 |
Puglisi EV, Green R, Noller HF, Puglisi JD. Structure of a conserved RNA component of the peptidyl transferase centre. Nature Structural Biology. 4: 775-8. PMID 9334738 DOI: 10.1038/Nsb1097-775 |
0.759 |
|
| 1996 |
Fourmy D, Recht MI, Blanchard SC, Puglisi JD. Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. Science (New York, N.Y.). 274: 1367-71. PMID 8910275 DOI: 10.1126/Science.274.5291.1367 |
0.648 |
|
| 1996 |
Recht MI, Fourmy D, Blanchard SC, Dahlquist KD, Puglisi JD. RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide. Journal of Molecular Biology. 262: 421-36. PMID 8893854 DOI: 10.1006/Jmbi.1996.0526 |
0.619 |
|
| 1996 |
Puglisi JD, Wyatt JR. Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots. Methods in Enzymology. 261: 323-50. PMID 8569502 DOI: 10.1016/S0076-6879(95)61016-2 |
0.355 |
|
| 1995 |
Puglisi JD, Chen L, Blanchard S, Frankel AD. Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex Science. 270: 1200-1203. PMID 7502045 DOI: 10.1126/Science.270.5239.1200 |
0.635 |
|
| 1995 |
Puglisi JD. RNA-protein interactions Chemistry & Biology. 2: 581. DOI: 10.1016/1074-5521(95)90121-3 |
0.303 |
|
| 1994 |
Puglisi EV, Puglisi JD, Williamson JR, RajBhandary UL. NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end. Proceedings of the National Academy of Sciences of the United States of America. 91: 11467-71. PMID 7972085 DOI: 10.1073/Pnas.91.24.11467 |
0.781 |
|
| 1993 |
Puglisi JD, Pütz J, Florentz C, Giegé R. Influence of tRNA tertiary structure and stability on aminoacylation by yeast aspartyl-tRNA synthetase. Nucleic Acids Research. 21: 41-9. PMID 8441619 |
0.492 |
|
| 1993 |
Giegé R, Puglisi JD, Florentz C. tRNA structure and aminoacylation efficiency. Progress in Nucleic Acid Research and Molecular Biology. 45: 129-206. PMID 8341800 DOI: 10.1016/S0079-6603(08)60869-7 |
0.484 |
|
| 1993 |
Pütz J, Puglisi JD, Florentz C, Giegé R. Additive, cooperative and anti-cooperative effects between identity nucleotides of a tRNA. The Embo Journal. 12: 2949-57. PMID 8335008 |
0.539 |
|
| 1993 |
Puglisi JD, Chen L, Frankel AD, Williamson JR. Role of RNA structure in arginine recognition of TAR RNA. Proceedings of the National Academy of Sciences of the United States of America. 90: 3680-4. PMID 7682716 DOI: 10.1073/Pnas.90.8.3680 |
0.579 |
|
| 1992 |
Perret V, Florentz C, Puglisi JD, Giegé R. Effect of conformational features on the aminoacylation of tRNAs and consequences on the permutation of tRNA specificities. Journal of Molecular Biology. 226: 323-33. PMID 1640453 DOI: 10.1016/0022-2836(92)90950-O |
0.545 |
|
| 1992 |
Rudinger J, Puglisi JD, Pütz J, Schatz D, Eckstein F, Florentz C, Giegé R. Determinant nucleotides of yeast tRNA(Asp) interact directly with aspartyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 89: 5882-6. PMID 1631068 DOI: 10.1073/Pnas.89.13.5882 |
0.519 |
|
| 1992 |
Puglisi JD, Tan R, Calnan BJ, Frankel AD, Williamson JR. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science (New York, N.Y.). 257: 76-80. PMID 1621097 DOI: 10.1126/Science.1621097 |
0.66 |
|
| 1992 |
Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Research. 20: 4515-23. PMID 1383928 DOI: 10.1093/Nar/20.17.4515 |
0.693 |
|
| 1991 |
Pütz J, Puglisi JD, Florentz C, Giegé R. Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase. Science (New York, N.Y.). 252: 1696-9. PMID 2047878 |
0.53 |
|
| 1990 |
Giegé R, Florentz C, Garcia A, Grosjean H, Perret V, Puglisi J, Théobald-Dietrich A, Ebel JP. Exploring the aminoacylation function of transfer RNA by macromolecular engineering approaches. Involvement of conformational features in the charging process of yeast tRNA(Asp). Biochimie. 72: 453-61. PMID 2124148 DOI: 10.1016/0300-9084(90)90069-S |
0.688 |
|
| 1990 |
Perret V, Garcia A, Puglisi J, Grosjean H, Ebel JP, Florentz C, Giegé R. Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides. Biochimie. 72: 735-43. PMID 2078590 DOI: 10.1016/0300-9084(90)90158-D |
0.726 |
|
| 1990 |
Wyatt JR, Puglisi JD, Tinoco I. RNA pseudoknots. Stability and loop size requirements. Journal of Molecular Biology. 214: 455-70. PMID 1696319 DOI: 10.1016/0022-2836(90)90193-P |
0.666 |
|
| 1990 |
Puglisi JD, Wyatt JR, Tinoco I. Conformation of an RNA pseudoknot. Journal of Molecular Biology. 214: 437-53. PMID 1696318 DOI: 10.1016/0022-2836(90)90192-O |
0.656 |
|
| 1990 |
Puglisi JD, Wyatt JR, Tinoco I. Solution conformation of an RNA hairpin loop. Biochemistry. 29: 4215-26. PMID 1694459 DOI: 10.1021/Bi00469A026 |
0.657 |
|
| 1989 |
Wyatt JR, Puglisi JD, Tinoco I. RNA folding: pseudoknots, loops and bulges. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 11: 100-6. PMID 2695075 DOI: 10.1002/Bies.950110406 |
0.7 |
|
| 1989 |
Puglisi JD, Tinoco I. Absorbance melting curves of RNA. Methods in Enzymology. 180: 304-25. PMID 2482421 DOI: 10.1016/0076-6879(89)80108-9 |
0.643 |
|
| 1988 |
Puglisi JD, Wyatt JR, Tinoco I. A pseudoknotted RNA oligonucleotide. Nature. 331: 283-6. PMID 3336440 DOI: 10.1038/331283A0 |
0.716 |
|
| 1987 |
Tinoco I, Davis PW, Hardin CC, Puglisi JD, Walker GT, Wyatt J. RNA structure from A to Z. Cold Spring Harbor Symposia On Quantitative Biology. 52: 135-46. PMID 2456875 DOI: 10.1101/Sqb.1987.052.01.018 |
0.679 |
|
| 1987 |
Trulson MO, Cruz P, Puglisi JD, Tinoco I, Mathies RA. Raman spectroscopic study of left-handed Z-RNA. Biochemistry. 26: 8624-30. PMID 2450564 DOI: 10.1021/Bi00400A020 |
0.661 |
|
| 1987 |
Hardin CC, Zarling DA, Puglisi JD, Trulson MO, Davis PW, Tinoco I. Stabilization of Z-RNA by chemical bromination and its recognition by anti-Z-DNA antibodies. Biochemistry. 26: 5191-9. PMID 2444254 DOI: 10.1021/Bi00390A044 |
0.652 |
|
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