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James R. Williamson - Publications

Affiliations: 
1990-1997 Department of Chemistry Massachusetts Institute of Technology, Cambridge, MA, United States 
 1998- Molecular Biology Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Area:
structural role of RNA
Website:
http://www.scripps.edu/research/faculty/williamson
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162 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sheng K, Li N, Rabuck-Gibbons JN, Dong X, Lyumkis D, Williamson JR. Assembly landscape for the bacterial large ribosomal subunit. Nature Communications. 14: 5220. PMID 37633970 DOI: 10.1038/s41467-023-40859-w  0.345
2023 Williamson J, Zhou A, Hammond J, Sheng K, Millar D. Early HIV-1 Gag Assembly on Lipid Membrane with vRNA. Research Square. PMID 37461524 DOI: 10.21203/rs.3.rs-3060076/v1  0.316
2022 D'Ascenzo L, Popova AM, Abernathy S, Sheng K, Limbach PA, Williamson JR. Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry. Nature Communications. 13: 2424. PMID 35505047 DOI: 10.1038/s41467-022-30057-5  0.328
2020 Popova A, D'Ascenzo L, Williamson JR. Expanding Mass Spectrometry Toolbox for RNA Modification Profiling Biophysical Journal. 118: 548a. DOI: 10.1016/J.Bpj.2019.11.2998  0.388
2020 Duss O, Stepanyuk GA, Puglisi JD, Williamson JR. Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding Biophysical Journal. 118: 334a. DOI: 10.1016/j.bpj.2019.11.1863  0.605
2019 Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR. SrmB Rescues Trapped Ribosome Assembly Intermediates. Journal of Molecular Biology. PMID 31877323 DOI: 10.1016/J.Jmb.2019.12.013  0.467
2019 Duss O, Stepanyuk GA, Puglisi JD, Williamson JR. Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding. Cell. 179: 1357-1369.e16. PMID 31761533 DOI: 10.1016/J.Bpj.2019.11.1863  0.691
2019 Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarné A, Woodson SA, Williamson JR, Ortega J. Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Research. PMID 31265110 DOI: 10.1093/nar/gkz571  0.762
2019 D'Ascenzo L, Popova A, Williamson JR. Pytheas: A Software to Map RNA Modifications via Tandem Mass Spectrometry Biophysical Journal. 116: 287a. DOI: 10.1016/J.Bpj.2018.11.1552  0.351
2018 Duss O, Stepanyuk GA, Grot A, O'Leary SE, Puglisi JD, Williamson JR. Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts. Nature Communications. 9: 5087. PMID 30504830 DOI: 10.1038/S41467-018-07423-3  0.654
2018 Solis GM, Kardakaris R, Valentine ER, Bar-Peled L, Chen AL, Blewett MM, McCormick MA, Williamson JR, Kennedy B, Cravatt BF, Petrascheck M. Translation attenuation by minocycline enhances longevity and proteostasis in old post-stress-responsive organisms. Elife. 7. PMID 30479271 DOI: 10.7554/Elife.40314  0.32
2018 Dai X, Zhu M, Warren M, Balakrishnan R, Okano H, Williamson JR, Fredrick K, Hwa T. Slowdown of Translational Elongation inunder Hyperosmotic Stress. Mbio. 9. PMID 29440576 DOI: 10.1128/Mbio.02375-17  0.313
2017 Hammond JA, Zhou L, Lamichhane R, Chu HY, Millar DP, Gerace L, Williamson JR. A Survey of DDX21 Activity during Rev/RRE Complex Formation. Journal of Molecular Biology. PMID 28705764 DOI: 10.1016/J.Jmb.2017.06.023  0.414
2017 Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D. Addressing preferred specimen orientation in single-particle cryo-EM through tilting. Nature Methods. PMID 28671674 DOI: 10.1038/Nmeth.4347  0.651
2017 Lamichhane R, Hammond JA, Pauszek RF, Anderson RM, Pedron I, van der Schans E, Williamson JR, Millar DP. A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly. Nucleic Acids Research. PMID 28379444 DOI: 10.1016/J.Bpj.2016.11.436  0.504
2017 Hammond JA, Lamichhane R, Millar DP, Williamson JR. A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev. Response Element. Journal of Molecular Biology. PMID 28153748 DOI: 10.1016/J.Jmb.2017.01.018  0.432
2017 Davis JH, Williamson JR. Structure and dynamics of bacterial ribosome biogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138067 DOI: 10.1098/Rstb.2016.0181  0.733
2017 Duss O, O'Leary S, Puglisi J, Williamson J. Co-Transcriptional Ribosome Assembly in Real-Time Biophysical Journal. 112: 178a. DOI: 10.1016/J.Bpj.2016.11.986  0.49
2016 Dai X, Zhu M, Warren M, Balakrishnan R, Patsalo V, Okano H, Williamson JR, Fredrick K, Wang YP, Hwa T. Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth. Nature Microbiology. 2: 16231. PMID 27941827 DOI: 10.1038/Nmicrobiol.2016.231  0.337
2016 Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR. Modular Assembly of the Bacterial Large Ribosomal Subunit. Cell. 167: 1610-1622.e15. PMID 27912064 DOI: 10.1016/J.Cell.2016.11.020  0.707
2016 Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JL, Britton RA, Williamson JR, Ortega J. YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit. Nucleic Acids Research. PMID 27484475 DOI: 10.1093/Nar/Gkw678  0.71
2016 Thurlow B, Davis JH, Leong V, F Moraes T, Williamson JR, Ortega J. Binding properties of YjeQ (RsgA), RbfA, RimM and Era to assembly intermediates of the 30S subunit. Nucleic Acids Research. PMID 27382067 DOI: 10.1093/Nar/Gkw613  0.669
2016 Beuck C, Williamson JR, Wüthrich K, Serrano P. The acidic domain is a unique structural feature of the splicing factor SYNCRIP. Protein Science : a Publication of the Protein Society. 25: 1545-50. PMID 27081926 DOI: 10.1002/Pro.2935  0.365
2016 Stepanyuk GA, Serrano P, Peralta E, Farr CL, Axelrod HL, Geralt M, Das D, Chiu HJ, Jaroszewski L, Deacon AM, Lesley SA, Elsliger MA, Godzik A, Wilson IA, Wüthrich K, ... Williamson JR, et al. UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex. Acta Crystallographica. Section D, Structural Biology. 72: 497-511. PMID 27050129 DOI: 10.1107/S2059798316001248  0.431
2016 Lavergne T, Lamichhane R, Malyshev DA, Li Z, Li L, Sperling E, Williamson JR, Millar DP, Romesberg FE. FRET Characterization of Complex Conformational Changes in a Large 16S Ribosomal RNA Fragment Site-Specifically Labeled Using Unnatural Base Pairs. Acs Chemical Biology. PMID 26942998 DOI: 10.1021/Acschembio.5B00952  0.508
2016 Popova A, Williamson J. Functional Profiling of Ribosomal RNA Modifications using Quantitative Mass Spectrometry Biophysical Journal. 110: 352a. DOI: 10.1016/J.Bpj.2015.11.1896  0.444
2015 Earnest TM, Lai J, Chen K, Hallock MJ, Williamson JR, Luthey-Schulten Z. Toward a Whole-Cell Model of Ribosome Biogenesis: Kinetic Modeling of SSU Assembly. Biophysical Journal. 109: 1117-35. PMID 26333594 DOI: 10.1016/J.Bpj.2015.07.030  0.428
2015 Williamson JR. Dynamics of Bacterial Ribosome Assembly in Cells Biophysical Journal. 108: 6a. DOI: 10.1016/J.Bpj.2014.11.052  0.404
2014 Gulati M, Jain N, Davis JH, Williamson JR, Britton RA. Functional interaction between ribosomal protein L6 and RbgA during ribosome assembly. Plos Genetics. 10: e1004694. PMID 25330043 DOI: 10.1371/Journal.Pgen.1004694  0.703
2014 Sashital DG, Greeman CA, Lyumkis D, Potter CS, Carragher B, Williamson JR. A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli. Elife. 3. PMID 25313868 DOI: 10.7554/Elife.04491  0.447
2014 Stokes JM, Davis JH, Mangat CS, Williamson JR, Brown ED. Discovery of a small molecule that inhibits bacterial ribosome biogenesis. Elife. 3: e03574. PMID 25233066 DOI: 10.7554/Elife.03574  0.709
2014 Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, ... ... Williamson JR, et al. A new system for naming ribosomal proteins. Current Opinion in Structural Biology. 24: 165-9. PMID 24524803 DOI: 10.1016/J.Sbi.2014.01.002  0.344
2014 Popova AM, Williamson JR. Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry. Journal of the American Chemical Society. 136: 2058-69. PMID 24422502 DOI: 10.1021/Ja412084B  0.458
2014 Jomaa A, Jain N, Davis JH, Williamson JR, Britton RA, Ortega J. Functional domains of the 50S subunit mature late in the assembly process. Nucleic Acids Research. 42: 3419-35. PMID 24335279 DOI: 10.1093/Nar/Gkt1295  0.698
2014 Stokes JM, Davis JH, Mangat CS, Williamson JR, Brown ED. Author response: Discovery of a small molecule that inhibits bacterial ribosome biogenesis Elife. DOI: 10.7554/Elife.03574.025  0.658
2013 Chen SS, Williamson JR. Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry. Journal of Molecular Biology. 425: 767-79. PMID 23228329 DOI: 10.1016/J.Jmb.2012.11.040  0.407
2013 Wu J, Campbell ZT, Menichelli E, Wickens M, Williamson JR. A protein.protein interaction platform involved in recruitment of GLD-3 to the FBF.fem-3 mRNA complex. Journal of Molecular Biology. 425: 738-54. PMID 23159559 DOI: 10.1016/J.Jmb.2012.11.013  0.463
2013 Menichelli E, Wu J, Campbell ZT, Wickens M, Williamson JR. Biochemical characterization of the Caenorhabditis elegans FBF.CPB-1 translational regulation complex identifies conserved protein interaction hotspots. Journal of Molecular Biology. 425: 725-37. PMID 23159558 DOI: 10.1016/J.Jmb.2012.11.012  0.458
2013 Williamson JR. Dynamics of the Ribosome Assembly Line in Living Cells Biophysical Journal. 104: 355a. DOI: 10.1016/J.Bpj.2012.11.1973  0.427
2012 Chen SS, Sperling E, Silverman JM, Davis JH, Williamson JR. Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry. Molecular Biosystems. 8: 3325-34. PMID 23090316 DOI: 10.1039/C2Mb25310K  0.7
2012 Beuck C, Qu S, Fagg WS, Ares M, Williamson JR. Structural analysis of the quaking homodimerization interface. Journal of Molecular Biology. 423: 766-81. PMID 22982292 DOI: 10.1016/J.Jmb.2012.08.027  0.461
2012 Ridgeway WK, Millar DP, Williamson JR. Quantitation of ten 30S ribosomal assembly intermediates using fluorescence triple correlation spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 109: 13614-9. PMID 22869699 DOI: 10.1073/Pnas.1204620109  0.448
2012 Campbell ZT, Bhimsaria D, Valley CT, Rodriguez-Martinez JA, Menichelli E, Williamson JR, Ansari AZ, Wickens M. Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity. Cell Reports. 1: 570-81. PMID 22708079 DOI: 10.1016/J.Celrep.2012.04.003  0.498
2012 Puglisi JD, Williamson JR. Digging deep into nucleic acid structure and nucleic acid protein recognition. Current Opinion in Structural Biology. 22: 249-50. PMID 22632873 DOI: 10.1016/J.Sbi.2012.05.003  0.527
2012 Campbell ZT, Menichelli E, Friend K, Wu J, Kimble J, Williamson JR, Wickens M. Identification of a conserved interface between PUF and CPEB proteins. The Journal of Biological Chemistry. 287: 18854-62. PMID 22496444 DOI: 10.1074/Jbc.M112.352815  0.435
2012 Kerkow DE, Carmel AB, Menichelli E, Ambrus G, Hills RD, Gerace L, Williamson JR. The structure of the NXF2/NXT1 heterodimeric complex reveals the combined specificity and versatility of the NTF2-like fold. Journal of Molecular Biology. 415: 649-65. PMID 22123199 DOI: 10.1016/J.Jmb.2011.11.027  0.425
2012 Menichelli E, Edgcomb SP, Recht MI, Williamson JR. The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA. Journal of Molecular Biology. 415: 489-502. PMID 22079365 DOI: 10.1016/J.Jmb.2011.10.046  0.522
2012 Edgcomb SP, Carmel AB, Naji S, Ambrus-Aikelin G, Reyes JR, Saphire AC, Gerace L, Williamson JR. DDX1 is an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. Journal of Molecular Biology. 415: 61-74. PMID 22051512 DOI: 10.1016/J.Jmb.2011.10.032  0.46
2012 Greeman CA, Williamson JR. Deletion of Ribosomal Cofactor Rimp Disrupts Late Stage 30S Subunit Assembly Biophysical Journal. 102: 602a. DOI: 10.1016/J.Bpj.2011.11.3279  0.405
2012 Ridgeway WK, Millar DP, Williamson JR. Fluorescence Triple Correlation Spectroscopy Resolves Ten Intermediates Along Different Parallel Ribosome Assembly Pathways Biophysical Journal. 102: 599a-600a. DOI: 10.1016/J.Bpj.2011.11.3265  0.417
2011 Shoji S, Dambacher CM, Shajani Z, Williamson JR, Schultz PG. Systematic chromosomal deletion of bacterial ribosomal protein genes. Journal of Molecular Biology. 413: 751-61. PMID 21945294 DOI: 10.1016/J.Jmb.2011.09.004  0.353
2011 Robertson-Anderson RM, Wang J, Edgcomb SP, Carmel AB, Williamson JR, Millar DP. Single-molecule studies reveal that DEAD box protein DDX1 promotes oligomerization of HIV-1 Rev on the Rev response element. Journal of Molecular Biology. 410: 959-71. PMID 21763499 DOI: 10.1016/J.Jmb.2011.04.026  0.404
2011 Shajani Z, Sykes MT, Williamson JR. Assembly of bacterial ribosomes. Annual Review of Biochemistry. 80: 501-26. PMID 21529161 DOI: 10.1146/Annurev-Biochem-062608-160432  0.452
2011 Schultheisz HL, Szymczyna BR, Scott LG, Williamson JR. Enzymatic de novo pyrimidine nucleotide synthesis. Journal of the American Chemical Society. 133: 297-304. PMID 21166398 DOI: 10.1021/Ja1059685  0.41
2010 Mulder AM, Yoshioka C, Beck AH, Bunner AE, Milligan RA, Potter CS, Carragher B, Williamson JR. Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science (New York, N.Y.). 330: 673-7. PMID 21030658 DOI: 10.1126/Science.1193220  0.395
2010 Sykes MT, Shajani Z, Sperling E, Beck AH, Williamson JR. Quantitative proteomic analysis of ribosome assembly and turnover in vivo. Journal of Molecular Biology. 403: 331-45. PMID 20709079 DOI: 10.1016/J.Jmb.2010.08.005  0.434
2010 Carmel AB, Wu J, Lehmann-Blount KA, Williamson JR. High-affinity consensus binding of target RNAs by the STAR/GSG proteins GLD-1, STAR-2 and Quaking. Bmc Molecular Biology. 11: 48. PMID 20573244 DOI: 10.1186/1471-2199-11-48  0.455
2010 Puglisi JD, Williamson JR. Nucleic acids continue to surprise. Current Opinion in Structural Biology. 20: 259-61. PMID 20510604 DOI: 10.1016/J.Sbi.2010.04.005  0.482
2010 Sykes MT, Sperling E, Chen SS, Williamson JR. Quantitation of the ribosomal protein autoregulatory network using mass spectrometry. Analytical Chemistry. 82: 5038-45. PMID 20481440 DOI: 10.1021/Ac9028664  0.344
2010 Beuck C, Szymczyna BR, Kerkow DE, Carmel AB, Columbus L, Stanfield RL, Williamson JR. Structure of the GLD-1 homodimerization domain: insights into STAR protein-mediated translational regulation. Structure (London, England : 1993). 18: 377-89. PMID 20223220 DOI: 10.1016/J.Str.2009.12.016  0.416
2010 Bunner AE, Beck AH, Williamson JR. Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape. Proceedings of the National Academy of Sciences of the United States of America. 107: 5417-22. PMID 20207951 DOI: 10.1073/Pnas.0912007107  0.457
2010 Bunner AE, Nord S, Wikström PM, Williamson JR. The effect of ribosome assembly cofactors on in vitro 30S subunit reconstitution. Journal of Molecular Biology. 398: 1-7. PMID 20188109 DOI: 10.1016/J.Jmb.2010.02.036  0.424
2009 Williamson JR. The ribosome at atomic resolution. Cell. 139: 1041-3. PMID 20005796 DOI: 10.1016/J.Cell.2009.11.028  0.336
2009 Ridgeway WK, Seitaridou E, Phillips R, Williamson JR. RNA-protein binding kinetics in an automated microfluidic reactor. Nucleic Acids Research. 37: e142. PMID 19759214 DOI: 10.1093/Nar/Gkp733  0.412
2009 Schultheisz HL, Szymczyna BR, Williamson JR. Enzymatic synthesis and structural characterization of 13C, 15N-poly(ADP-ribose). Journal of the American Chemical Society. 131: 14571-8. PMID 19757771 DOI: 10.1021/Ja903155S  0.337
2009 Sharpe Elles LM, Sykes MT, Williamson JR, Uhlenbeck OC. A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit. Nucleic Acids Research. 37: 6503-14. PMID 19734347 DOI: 10.1093/Nar/Gkp711  0.445
2009 Bunner AE, Williamson JR. Stable isotope pulse-chase monitored by quantitative mass spectrometry applied to E. coli 30S ribosome assembly kinetics. Methods (San Diego, Calif.). 49: 136-41. PMID 19559090 DOI: 10.1016/J.Ymeth.2009.06.002  0.357
2009 Sykes MT, Williamson JR. A complex assembly landscape for the 30S ribosomal subunit. Annual Review of Biophysics. 38: 197-215. PMID 19416066 DOI: 10.1146/Annurev.Biophys.050708.133615  0.532
2009 Szymczyna BR, Taurog RE, Young MJ, Snyder JC, Johnson JE, Williamson JR. Synergy of NMR, computation, and X-ray crystallography for structural biology. Structure (London, England : 1993). 17: 499-507. PMID 19368883 DOI: 10.1016/J.Str.2009.03.001  0.303
2009 El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F, Williamson JR, Schimmel P, Swairjo MA, de Crécy-Lagard V. The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. Nucleic Acids Research. 37: 2894-909. PMID 19287007 DOI: 10.1093/Nar/Gkp152  0.398
2009 Ridgeway WK, Shajani Z, Millar DP, Williamson JR. Parallel Pathways in 30S Ribosome Assembly Biophysical Journal. 96: 9a-10a. DOI: 10.1016/J.Bpj.2008.12.945  0.456
2008 Carlomagno T, Amata I, Williamson JR, Hennig M. NMR assignments of HIV-2 TAR RNA. Biomolecular Nmr Assignments. 2: 167-9. PMID 19636896 DOI: 10.1007/S12104-008-9112-X  0.373
2008 Bunner AE, Trauger SA, Siuzdak G, Williamson JR. Quantitative ESI-TOF analysis of macromolecular assembly kinetics. Analytical Chemistry. 80: 9379-86. PMID 19007188 DOI: 10.1021/Ac8020505  0.399
2008 Recht MI, Ryder SP, Williamson JR. Monitoring assembly of ribonucleoprotein complexes by isothermal titration calorimetry. Methods in Molecular Biology (Clifton, N.J.). 488: 117-27. PMID 18982287 DOI: 10.1007/978-1-60327-475-3_8  0.493
2008 Ryder SP, Recht MI, Williamson JR. Quantitative analysis of protein-RNA interactions by gel mobility shift. Methods in Molecular Biology (Clifton, N.J.). 488: 99-115. PMID 18982286 DOI: 10.1007/978-1-60327-475-3_7  0.455
2008 Schultheisz HL, Szymczyna BR, Scott LG, Williamson JR. Pathway engineered enzymatic de novo purine nucleotide synthesis. Acs Chemical Biology. 3: 499-511. PMID 18707057 DOI: 10.1021/Cb800066P  0.359
2008 Williamson JR. Cooperativity in macromolecular assembly. Nature Chemical Biology. 4: 458-65. PMID 18641626 DOI: 10.1038/Nchembio.102  0.317
2008 Williamson JR. Biophysical studies of bacterial ribosome assembly. Current Opinion in Structural Biology. 18: 299-304. PMID 18541423 DOI: 10.1016/J.Sbi.2008.05.001  0.464
2008 Naidoo N, Harrop SJ, Sobti M, Haynes PA, Szymczyna BR, Williamson JR, Curmi PM, Mabbutt BC. Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment. Journal of Molecular Biology. 377: 1357-71. PMID 18329667 DOI: 10.1016/J.Jmb.2008.01.007  0.432
2008 Edgcomb SP, Aschrafi A, Kompfner E, Williamson JR, Gerace L, Hennig M. Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes. Protein Science : a Publication of the Protein Society. 17: 420-30. PMID 18218716 DOI: 10.1110/Ps.073246608  0.476
2007 Hennig M, Scott LG, Sperling E, Bermel W, Williamson JR. Synthesis of 5-fluoropyrimidine nucleotides as sensitive NMR probes of RNA structure. Journal of the American Chemical Society. 129: 14911-21. PMID 17990877 DOI: 10.1021/Ja073825I  0.361
2007 Szymczyna BR, Gan L, Johnson JE, Williamson JR. Solution NMR studies of the maturation intermediates of a 13 MDa viral capsid. Journal of the American Chemical Society. 129: 7867-76. PMID 17536799 DOI: 10.1021/Ja071118J  0.331
2007 Kiessling LL, Doudna JA, Johnsson K, Mapp AK, Marletta MA, Seeberger PH, Williamson JR, Wedde SG. A higher degree of difficulty. Acs Chemical Biology. 2: 197-9. PMID 17455890 DOI: 10.1021/Cb7000846  0.424
2006 Vallurupalli P, Scott L, Hennig M, Williamson JR, Kay LE. New RNA labeling methods offer dramatic sensitivity enhancements in 2H NMR relaxation spectra. Journal of the American Chemical Society. 128: 9346-7. PMID 16848466 DOI: 10.1021/Ja0632512  0.376
2006 Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. The RNA Ontology Consortium: an open invitation to the RNA community. Rna (New York, N.Y.). 12: 533-41. PMID 16484377 DOI: 10.1261/Rna.2343206  0.437
2006 Cech TR, Moras D, Nagai K, Williamson JR. 11 The RNP World Cold Spring Harbor Monograph Archive. 43: 309-326. DOI: 10.1101/087969739.43.309  0.618
2005 Williamson JR. Assembly of the 30S ribosomal subunit. Quarterly Reviews of Biophysics. 38: 397-403. PMID 16934171 DOI: 10.1017/S0033583506004264  0.425
2005 Talkington MW, Siuzdak G, Williamson JR. An assembly landscape for the 30S ribosomal subunit. Nature. 438: 628-32. PMID 16319883 DOI: 10.1038/Nature04261  0.488
2005 Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR. Dual modes of RNA-silencing suppression by Flock House virus protein B2. Nature Structural & Molecular Biology. 12: 952-7. PMID 16228003 DOI: 10.1038/Nsmb1005  0.715
2005 Scott LG, Williamson JR. The binding interface between Bacillus stearothermophilus ribosomal protein S15 and its 5'-translational operator mRNA. Journal of Molecular Biology. 351: 280-90. PMID 16005889 DOI: 10.1016/J.Jmb.2005.06.030  0.482
2005 Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE. RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. Journal of Molecular Biology. 351: 371-82. PMID 16002091 DOI: 10.1016/J.Jmb.2005.05.069  0.442
2005 Fedor MJ, Williamson JR. The catalytic diversity of RNAs. Nature Reviews. Molecular Cell Biology. 6: 399-412. PMID 15956979 DOI: 10.1038/Nrm1647  0.4
2005 Lehmann-Blount KA, Williamson JR. Shape-specific nucleotide binding of single-stranded RNA by the GLD-1 STAR domain. Journal of Molecular Biology. 346: 91-104. PMID 15663930 DOI: 10.1016/J.Jmb.2004.11.049  0.497
2004 Recht MI, Williamson JR. RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex. Journal of Molecular Biology. 344: 395-407. PMID 15522293 DOI: 10.1016/J.Jmb.2004.09.009  0.405
2004 Scott LG, Geierstanger BH, Williamson JR, Hennig M. Enzymatic synthesis and 19F NMR studies of 2-fluoroadenine-substituted RNA. Journal of the American Chemical Society. 126: 11776-7. PMID 15382896 DOI: 10.1021/Ja047556X  0.451
2004 Ryder SP, Williamson JR. Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination. Rna (New York, N.Y.). 10: 1449-58. PMID 15273320 DOI: 10.1261/Rna.7780504  0.392
2004 Chao JA, Williamson JR. Joint X-ray and NMR refinement of the yeast L30e-mRNA complex. Structure (London, England : 1993). 12: 1165-76. PMID 15242593 DOI: 10.1016/J.Str.2004.04.023  0.711
2004 Klostermeier D, Sears P, Wong CH, Millar DP, Williamson JR. A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Research. 32: 2707-15. PMID 15148358 DOI: 10.1093/Nar/Gkh588  0.459
2004 Ryder SP, Frater LA, Abramovitz DL, Goodwin EB, Williamson JR. RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1. Nature Structural & Molecular Biology. 11: 20-8. PMID 14718919 DOI: 10.1038/Nsmb706  0.402
2003 Johnson EC, Feher VA, Peng JW, Moore JM, Williamson JR. Application of NMR SHAPES screening to an RNA target. Journal of the American Chemical Society. 125: 15724-5. PMID 14677945 DOI: 10.1021/Ja037499S  0.391
2003 Gonsalvez GB, Lehmann KA, Ho DK, Stanitsa ES, Williamson JR, Long RM. RNA-protein interactions promote asymmetric sorting of the ASH1 mRNA ribonucleoprotein complex. Rna (New York, N.Y.). 9: 1383-99. PMID 14561888 DOI: 10.1261/Rna.5120803  0.441
2003 Cilley CD, Williamson JR. Structural mimicry in the phage phi21 N peptide-boxB RNA complex. Rna (New York, N.Y.). 9: 663-76. PMID 12756325 DOI: 10.1261/Rna.2189203  0.393
2003 Hoggan DB, Chao JA, Prasad GS, Stout CD, Williamson JR. Combinatorial crystallization of an RNA-protein complex. Acta Crystallographica. Section D, Biological Crystallography. 59: 466-73. PMID 12595703 DOI: 10.1107/S0907444902023399  0.717
2003 Chao JA, Prasad GS, White SA, Stout CD, Williamson JR. Inherent protein structural flexibility at the RNA-binding interface of L30e. Journal of Molecular Biology. 326: 999-1004. PMID 12589748 DOI: 10.1016/S0022-2836(02)01476-6  0.736
2003 Williamson JR. After the ribosome structures: how are the subunits assembled? Rna (New York, N.Y.). 9: 165-7. PMID 12554857 DOI: 10.1261/Rna.2164903  0.53
2002 Kim HD, Nienhaus GU, Ha T, Orr JW, Williamson JR, Chu S. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proceedings of the National Academy of Sciences of the United States of America. 99: 4284-9. PMID 11929999 DOI: 10.1073/Pnas.032077799  0.392
2002 Dayie KT, Brodsky AS, Williamson JR. Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation. Journal of Molecular Biology. 317: 263-78. PMID 11902842 DOI: 10.1006/Jmbi.2001.5424  0.379
2002 Carlomagno T, Hennig M, Williamson JR. A novel PH-cT-COSY methodology for measuring JPH coupling constants in unlabeled nucleic acids. application to HIV-2 TAR RNA. Journal of Biomolecular Nmr. 22: 65-81. PMID 11885982 DOI: 10.1023/A:1013811631477  0.301
2002 Maher LJ, Williamson JR. Deconstructing genomics: New developments in the structural biology of nucleic acids Current Opinion in Structural Biology. 12: 281-282. DOI: 10.1016/S0959-440X(02)00322-6  0.466
2001 Hennig M, Williamson JR, Brodsky AS, Battiste JL. Recent advances in RNA structure determination by NMR. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 7.7. PMID 18428875 DOI: 10.1002/0471142700.Nc0707S02  0.43
2001 Scott LG, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with its 5'-translational operator mRNA. Journal of Molecular Biology. 314: 413-22. PMID 11846555 DOI: 10.1006/Jmbi.2001.5165  0.47
2001 Recht MI, Williamson JR. Central domain assembly: thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex. Journal of Molecular Biology. 313: 35-48. PMID 11601845 DOI: 10.1006/Jmbi.2001.5018  0.332
2001 Treiber DK, Williamson JR. Beyond kinetic traps in RNA folding Current Opinion in Structural Biology. 11: 309-314. PMID 11406379 DOI: 10.1016/S0959-440X(00)00206-2  0.436
2001 Williamson JR. Proteins that bind RNA and the labs who love them Nature Structural Biology. 8: 390-391. PMID 11323709 DOI: 10.1038/87540  0.464
2001 Treiber DK, Williamson JR. Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction Journal of Molecular Biology. 305: 11-21. PMID 11114243 DOI: 10.1006/Jmbi.2000.4253  0.397
2001 Ha T, Zhuang X, Babcock H, Kim H, Orr JW, Williamson JR, Bartley L, Russell R, Herschlag D, Chu S. The study of single biomolecules with fluorescence methods Springer Series in Chemical Physics. 67: 326-337.  0.391
2000 Williamson JR. Induced fit in RNA-protein recognition Nature Structural Biology. 7: 834-837. PMID 11017187 DOI: 10.1038/79575  0.484
2000 Williamson JR. Small subunit, big science Nature. 407: 306-307. PMID 11014170 DOI: 10.1038/35030271  0.368
2000 Treiber DK, Williamson JR. Kinetic oligonucleotide hybridization for monitoring kinetic folding of large RNAs Methods in Enzymology. 317: 330-353. PMID 10829289 DOI: 10.1016/S0076-6879(00)17023-5  0.464
2000 Agalarov SC, Prasad GS, Funke PM, Stout CD, Williamson JR. Structure of the S15,S60,S18-rRNA complex: Assembly of the 30S ribosome central domain Science. 288: 107-112. PMID 10753109 DOI: 10.1126/Science.288.5463.107  0.469
2000 Agalarov SC, Williamson JR. A hierarchy of RNA subdomains in assembly of the central domain of the 30 S ribosomal subunit Rna. 6: 402-408. PMID 10744024 DOI: 10.1017/S1355838200991945  0.488
2000 Hennig M, Williamson JR. Detection of N-H ··· N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances Nucleic Acids Research. 28: 1585-1593. PMID 10710425 DOI: 10.1093/Nar/28.7.1585  0.33
2000 Mao H, White S, Williamson j. 1H, 13C, and 15N Chemical Shift Assignments for Yeast Ribosomal Protein L30 in Complex with Its mRNA in Solution Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4345  0.323
1999 Mao H, White SA, Williamson JR. A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nature Structural Biology. 6: 1139-47. PMID 10581556 DOI: 10.1038/70081  0.506
1999 Cilley CD, Williamson JR. PACE analysis of RNA-peptide interactions Methods in Molecular Biology (Clifton, N.J.). 118: 129-141. PMID 10549520 DOI: 10.1385/1-59259-676-2:129  0.356
1999 Hongyuan M, Williamson JR. Assignment of the L30-mRNA complex using selective isotopic labeling and RNA mutants Nucleic Acids Research. 27: 4059-4070. PMID 10497271 DOI: 10.1093/Nar/27.20.4059  0.482
1999 Mao H, Williamson JR. Local folding coupled to RNA binding in the yeast ribosomal protein L30 Journal of Molecular Biology. 292: 345-359. PMID 10493880 DOI: 10.1006/Jmbi.1999.3044  0.448
1999 Ha T, Zhuang X, Kim HD, Orr JW, Williamson JR, Chu S. Ligand-induced conformational changes observed in single RNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 96: 9077-82. PMID 10430898 DOI: 10.1073/Pnas.96.16.9077  0.422
1999 Treiber DK, Williamson JR. Exposing the kinetic traps in RNA folding Current Opinion in Structural Biology. 9: 339-345. PMID 10361090 DOI: 10.1016/S0959-440X(99)80045-1  0.44
1999 Zamore PD, Bartel DP, Lehmann R, Williamson JR. The PUMILIO-RNA interaction: a single RNA-binding domain monomer recognizes a bipartite target sequence. Biochemistry. 38: 596-604. PMID 9888799 DOI: 10.1021/Bi982264S  0.778
1999 Puglisi JD, Williamson JR. 16 RNA Interaction with Small Ligands and Peptides Cold Spring Harbor Monograph Archive. 37: 403-425. DOI: 10.1101/087969589.37.403  0.359
1998 Batey RT, Williamson JR. Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15. Rna (New York, N.Y.). 4: 984-97. PMID 9701289 DOI: 10.1017/S1355838298980426  0.665
1998 Brodsky AS, Erlacher HA, Williamson JR. NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex. Nucleic Acids Research. 26: 1991-5. PMID 9518494 DOI: 10.1093/Nar/26.8.1991  0.318
1998 Treiber DK, Rook MS, Zarrinkar PP, Williamson JR. Kinetic intermediates trapped by native interactions in RNA folding. Science (New York, N.Y.). 279: 1943-6. PMID 9506945 DOI: 10.1126/Science.279.5358.1943  0.329
1997 Brodsky AS, Williamson JR. Solution structure of the HIV-2 TAR-argininamide complex. Journal of Molecular Biology. 267: 624-39. PMID 9126842 DOI: 10.1006/Jmbi.1996.0879  0.31
1997 Curtis D, Treiber DK, Tao F, Zamore PD, Williamson JR, Lehmann R. A CCHC metal-binding domain in Nanos is essential for translational regulation. The Embo Journal. 16: 834-43. PMID 9049312 DOI: 10.1093/Emboj/16.4.834  0.73
1997 Tolbert TJ, Williamson JR. Preparation of specifically deuterated and 13C-labeled RNA for NMR studies using enzymatic synthesis Journal of the American Chemical Society. 119: 12100-12108. DOI: 10.1021/Ja9725054  0.401
1997 Tan R, Brodsky A, Williamson JR, Frankel AD. RNA Recognition by HIV-1 Tat and Rev Seminars in Virology. 8: 186-193. DOI: 10.1006/Smvy.1997.0121  0.478
1996 Batey RT, Cloutier N, Mao H, Williamson JR. Improved large scale culture of Methylophilus methylotrophus for 13C/15N labeling and random fractional deuteration of ribonucleotides. Nucleic Acids Research. 24: 4836-7. PMID 8972874 DOI: 10.1093/Nar/24.23.4836  0.579
1996 Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. Journal of Molecular Biology. 261: 550-67. PMID 8794876 DOI: 10.1006/Jmbi.1996.0482  0.637
1996 Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. Journal of Molecular Biology. 261: 536-49. PMID 8794875 DOI: 10.1006/Jmbi.1996.0481  0.625
1996 Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay LE, Frankel AD, Williamson JR. Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science (New York, N.Y.). 273: 1547-51. PMID 8703216 DOI: 10.1126/Science.273.5281.1547  0.391
1996 Williamson JR. Aptly named aptamers display their aptitude. Nature. 382: 112-3. PMID 8700196 DOI: 10.1038/382112A0  0.308
1996 Zarrinkar PP, Williamson JR. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding. Nature Structural Biology. 3: 432-8. PMID 8612073 DOI: 10.1038/Nsb0596-432  0.455
1996 Zarrinkar PP, Williamson JR. The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme. Nucleic Acids Research. 24: 854-8. PMID 8600452 DOI: 10.1093/Nar/24.5.854  0.34
1996 Battiste JL, Tan R, Frankel AD, Williamson JR. Assignment and modeling of the Rev Response Element RNA bound to a Rev peptide using 13C-heteronuclear NMR. Journal of Biomolecular Nmr. 6: 375-89. PMID 8563466 DOI: 10.1007/Bf00197637  0.485
1996 Tolbert TJ, Williamson JR. Preparation of specifically deuterated RNA for NMR studies using a combination of chemical and enzymatic synthesis Journal of the American Chemical Society. 118: 7929-7940. DOI: 10.1021/Ja961274I  0.432
1995 Batey RT, Battiste JL, Williamson JR. Preparation of isotopically enriched RNAs for heteronuclear NMR. Methods in Enzymology. 261: 300-22. PMID 8569501 DOI: 10.1016/S0076-6879(95)61015-4  0.623
1995 Williamson JR. RNA origami. Nature Structural Biology. 1: 270-2. PMID 7545071 DOI: 10.1038/nsb0594-270  0.304
1994 Battiste JL, Tan R, Frankel AD, Williamson JR. Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base pairs. Biochemistry. 33: 2741-7. PMID 8130185 DOI: 10.1021/Bi00176A001  0.474
1994 Zarrinkar PP, Williamson JR. Kinetic intermediates in RNA folding. Science (New York, N.Y.). 265: 918-24. PMID 8052848 DOI: 10.1126/science.8052848  0.305
1994 Puglisi EV, Puglisi JD, Williamson JR, RajBhandary UL. NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end. Proceedings of the National Academy of Sciences of the United States of America. 91: 11467-71. PMID 7972085 DOI: 10.1073/Pnas.91.24.11467  0.597
1994 Dias E, Battiste JL, Williamson JR. Chemical Probe for Glycosidic Conformation in Telomeric DNAs Journal of the American Chemical Society. 116: 4479-4480. DOI: 10.1021/Ja00089A048  0.309
1993 Puglisi JD, Chen L, Frankel AD, Williamson JR. Role of RNA structure in arginine recognition of TAR RNA. Proceedings of the National Academy of Sciences of the United States of America. 90: 3680-4. PMID 7682716 DOI: 10.1073/Pnas.90.8.3680  0.649
1992 Puglisi JD, Tan R, Calnan BJ, Frankel AD, Williamson JR. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science (New York, N.Y.). 257: 76-80. PMID 1621097 DOI: 10.1126/Science.1621097  0.62
1992 Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Research. 20: 4515-23. PMID 1383928 DOI: 10.1093/Nar/20.17.4515  0.714
1991 Zahler AM, Williamson JR, Cech TR, Prescott DM. Inhibition of telomerase by G-quartet DNA structures. Nature. 350: 718-20. PMID 2023635 DOI: 10.1038/350718A0  0.492
1990 Eimer W, Williamson JR, Boxer SG, Pecora R. Characterization of the overall and internal dynamics of short oligonucleotides by depolarized dynamic light scattering and NMR relaxation measurements. Biochemistry. 29: 799-811. PMID 2337597 DOI: 10.1021/Bi00455A030  0.49
1989 Williamson JR, Boxer SG. Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations. Biochemistry. 28: 2831-6. PMID 2742815 DOI: 10.1021/Bi00433A013  0.516
1989 Williamson JR, Boxer SG. Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG). Biochemistry. 28: 2819-31. PMID 2742814 DOI: 10.1021/Bi00433A012  0.506
1989 Williamson JR, Raghuraman MK, Cech TR. Monovalent cation-induced structure of telomeric DNA: the G-quartet model. Cell. 59: 871-80. PMID 2590943 DOI: 10.1016/0092-8674(89)90610-7  0.712
1988 Williamson JR, Boxer SG. Synthesis of a thymidine phosphoramidite labelled with 13C at C6: relaxation studies of the loop region in a 13C labelled DNA hairpin. Nucleic Acids Research. 16: 1529-40. PMID 3347496 DOI: 10.1093/Nar/16.4.1529  0.484
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