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Zachary Lippman - Publications

Affiliations: 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Aguirre L, Hendelman A, Hutton SF, McCandlish DM, Lippman ZB. Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size. Science (New York, N.Y.). 382: 315-320. PMID 37856609 DOI: 10.1126/science.adi5222  0.374
2022 Alonge M, Lebeigle L, Kirsche M, Jenike K, Ou S, Aganezov S, Wang X, Lippman ZB, Schatz MC, Soyk S. Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing. Genome Biology. 23: 258. PMID 36522651 DOI: 10.1186/s13059-022-02823-7  0.506
2022 He J, Alonge M, Ramakrishnan S, Benoit M, Soyk S, Reem NT, Hendelman A, Van Eck J, Schatz MC, Lippman ZB. Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome. The Plant Cell. PMID 36268892 DOI: 10.1093/plcell/koac305  0.73
2022 Kang MS, Kim YJ, Heo J, Rajendran S, Wang X, Bae JH, Lippman Z, Park SJ. Newly Discovered Alleles of the Tomato Antiflorigen Gene Provide a Range of Plant Compactness and Yield. International Journal of Molecular Sciences. 23. PMID 35806155 DOI: 10.3390/ijms23137149  0.584
2022 Kim Y, Kim GW, Han K, Lee HY, Jo J, Kwon JK, Lemmon Z, Lippman Z, Kang BC. Identification of Genetic Factors Controlling the Formation of Multiple Flowers Per Node in Pepper ( spp.). Frontiers in Plant Science. 13: 884338. PMID 35615119 DOI: 10.3389/fpls.2022.884338  0.356
2022 Kwon CT, Tang L, Wang X, Gentile I, Hendelman A, Robitaille G, Van Eck J, Xu C, Lippman ZB. Dynamic evolution of small signalling peptide compensation in plant stem cell control. Nature Plants. PMID 35347264 DOI: 10.1038/s41477-022-01118-w  0.619
2021 Wang X, Aguirre L, Rodríguez-Leal D, Hendelman A, Benoit M, Lippman ZB. Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit. Nature Plants. 7: 419-427. PMID 33846596 DOI: 10.1038/s41477-021-00898-x  0.741
2021 Hendelman A, Zebell S, Rodriguez-Leal D, Dukler N, Robitaille G, Wu X, Kostyun J, Tal L, Wang P, Bartlett ME, Eshed Y, Efroni I, Lippman ZB. Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection. Cell. PMID 33667348 DOI: 10.1016/j.cell.2021.02.001  0.342
2020 Soyk S, Benoit M, Lippman ZB. New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation. Annual Review of Genetics. PMID 32870731 DOI: 10.1146/Annurev-Genet-050720-122916  0.744
2020 Alonge M, Wang X, Benoit M, Soyk S, Pereira L, Zhang L, Suresh H, Ramakrishnan S, Maumus F, Ciren D, Levy Y, Harel TH, Shalev-Schlosser G, Amsellem Z, Razifard H, ... ... Lippman ZB, et al. Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell. PMID 32553272 DOI: 10.1016/J.Cell.2020.05.021  0.759
2019 Kwon CT, Heo J, Lemmon ZH, Capua Y, Hutton SF, Van Eck J, Park SJ, Lippman ZB. Rapid customization of Solanaceae fruit crops for urban agriculture. Nature Biotechnology. PMID 31873217 DOI: 10.1038/s41587-019-0361-2  0.3
2019 Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC. RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biology. 20: 224. PMID 31661016 DOI: 10.1186/S13059-019-1829-6  0.47
2019 Eshed Y, Lippman ZB. Revolutions in agriculture chart a course for targeted breeding of old and new crops. Science (New York, N.Y.). PMID 31488704 DOI: 10.1126/Science.Aax0025  0.328
2019 Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB. Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nature Plants. 5: 471-479. PMID 31061537 DOI: 10.1038/S41477-019-0422-Z  0.441
2018 Lemmon ZH, Reem NT, Dalrymple J, Soyk S, Swartwood KE, Rodriguez-Leal D, Van Eck J, Lippman ZB. Rapid improvement of domestication traits in an orphan crop by genome editing. Nature Plants. 4: 766-770. PMID 30287957 DOI: 10.1038/s41477-018-0259-x  0.39
2017 Rodríguez-Leal D, Lemmon ZH, Man J, Bartlett ME, Lippman ZB. Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing. Cell. PMID 28919077 DOI: 10.1016/J.Cell.2017.08.030  0.484
2017 Soyk S, Lemmon ZH, Oved M, Fisher J, Liberatore KL, Park SJ, Goren A, Jiang K, Ramos A, van der Knaap E, Van Eck J, Zamir D, Eshed Y, Lippman ZB. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell. PMID 28528644 DOI: 10.1016/J.Cell.2017.04.032  0.744
2016 Soyk S, Müller NA, Park SJ, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez JM, Lippman ZB. Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nature Genetics. PMID 27918538 DOI: 10.1038/Ng.3733  0.321
2016 Lemmon ZH, Park SJ, Jiang K, Van Eck J, Schatz MC, Lippman ZB. The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation. Genome Research. PMID 27821409 DOI: 10.1101/gr.207837.116  0.362
2016 Xu C, Park SJ, Van Eck J, Lippman ZB. Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators. Genes & Development. 30: 2048-2061. PMID 27798848 DOI: 10.1101/gad.288415.116  0.386
2015 MacAlister CA, Ortiz-Ramírez C, Becker JD, Feijó JA, Lippman ZB. Hydroxyproline O-arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens. The Plant Journal : For Cell and Molecular Biology. PMID 26577059 DOI: 10.1111/tpj.13079  0.304
2015 Xu C, Liberatore KL, MacAlister CA, Huang Z, Chu YH, Jiang K, Brooks C, Ogawa-Ohnishi M, Xiong G, Pauly M, Van Eck J, Matsubayashi Y, van der Knaap E, Lippman ZB. A cascade of arabinosyltransferases controls shoot meristem size in tomato. Nature Genetics. 47: 784-92. PMID 26005869 DOI: 10.1038/Ng.3309  0.736
2014 Park SJ, Jiang K, Tal L, Yichie Y, Gar O, Zamir D, Eshed Y, Lippman ZB. Optimization of crop productivity in tomato using induced mutations in the florigen pathway. Nature Genetics. 46: 1337-42. PMID 25362485 DOI: 10.1038/Ng.3131  0.341
2013 Jiang K, Liberatore KL, Park SJ, Alvarez JP, Lippman ZB. Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture. Plos Genetics. 9: e1004043. PMID 24385931 DOI: 10.1371/Journal.Pgen.1004043  0.749
2012 MacAlister CA, Park SJ, Jiang K, Marcel F, Bendahmane A, Izkovich Y, Eshed Y, Lippman ZB. Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene. Nature Genetics. 44: 1393-8. PMID 23143603 DOI: 10.1038/Ng.2465  0.316
2012 Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Kaneko T, Nakamura Y, Shibata D, Aoki K, Egholm M, Knight J, Bogden R, Li C, Shuang Y, ... ... Lippman ZB, et al. The tomato genome sequence provides insights into fleshy fruit evolution Nature. 485: 635-641. PMID 22660326 DOI: 10.1038/Nature11119  0.351
2012 Park SJ, Jiang K, Schatz MC, Lippman ZB. Rate of meristem maturation determines inflorescence architecture in tomato. Proceedings of the National Academy of Sciences of the United States of America. 109: 639-44. PMID 22203998 DOI: 10.1073/pnas.1114963109  0.316
2010 Krieger U, Lippman ZB, Zamir D. The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nature Genetics. 42: 459-63. PMID 20348958 DOI: 10.1038/Ng.550  0.418
2008 Lippman ZB, Cohen O, Alvarez JP, Abu-Abied M, Pekker I, Paran I, Eshed Y, Zamir D. The making of a compound inflorescence in tomato and related nightshades. Plos Biology. 6: e288. PMID 19018664 DOI: 10.1371/Journal.Pbio.0060288  0.306
2008 Lippman Z. Winning a plant campaign Nature. 453: 954-954. DOI: 10.1038/Nj7197-954C  0.344
2007 Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA. Epigenetic natural variation in Arabidopsis thaliana. Plos Biology. 5: e174. PMID 17579518 DOI: 10.1371/Journal.Pbio.0050174  0.573
2007 Lippman ZB, Zamir D. Heterosis: revisiting the magic. Trends in Genetics : Tig. 23: 60-6. PMID 17188398 DOI: 10.1016/J.Tig.2006.12.006  0.35
2006 Semel Y, Nissenbaum J, Menda N, Zinder M, Krieger U, Issman N, Pleban T, Lippman Z, Gur A, Zamir D. Overdominant quantitative trait loci for yield and fitness in tomato. Proceedings of the National Academy of Sciences of the United States of America. 103: 12981-6. PMID 16938842 DOI: 10.1073/Pnas.0604635103  0.412
2005 May BP, Lippman ZB, Fang Y, Spector DL, Martienssen RA. Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. Plos Genetics. 1: e79. PMID 16389298 DOI: 10.1371/Journal.Pgen.0010079  0.548
2005 Lippman Z, Gendrel AV, Colot V, Martienssen R. Profiling DNA methylation patterns using genomic tiling microarrays. Nature Methods. 2: 219-24. PMID 16163803 DOI: 10.1038/Nmeth0305-219  0.524
2005 Gendrel AV, Lippman Z, Martienssen R, Colot V. Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods. 2: 213-8. PMID 16163802 DOI: 10.1038/Nmeth0305-213  0.568
2004 Martienssen R, Lippman Z, May B, Ronemus M, Vaughn MW. Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor Symposia On Quantitative Biology. 69: 371-380. PMID 16117670 DOI: 10.1101/Sqb.2004.69.371  0.584
2004 Lippman Z, Martienssen R. The role of RNA interference in heterochromatic silencing. Nature. 431: 364-70. PMID 15372044 DOI: 10.1038/Nature02875  0.561
2004 Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R. Role of transposable elements in heterochromatin and epigenetic control. Nature. 430: 471-6. PMID 15269773 DOI: 10.1038/Nature02651  0.598
2004 Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature. 427: 164-7. PMID 14712277 DOI: 10.1038/Nature02269  0.589
2003 Lippman Z, May B, Yordan C, Singer T, Martienssen R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. Plos Biology. 1: E67. PMID 14691539 DOI: 10.1371/Journal.Pbio.0000067  0.572
2002 Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science (New York, N.Y.). 297: 1871-3. PMID 12077425 DOI: 10.1126/Science.1074950  0.555
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