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Jeffrey E. Barrick - Publications

Affiliations: 
Chemistry & Biochemistry University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
effects of mutations on cell physiology
Website:
http://www.cm.utexas.edu/jeffrey_barrick
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89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Uz-Zaman MH, D'Alton S, Barrick JE, Ochman H. Promoter capture drives the emergence of proto-genes in . Biorxiv : the Preprint Server For Biology. PMID 38013999 DOI: 10.1101/2023.11.15.567300  0.319
2023 Lariviere PJ, Ashraf AHMZ, Leonard SP, Miller LG, Moran NA, Barrick JE. Single-step genome engineering in the bee gut symbiont . Biorxiv : the Preprint Server For Biology. PMID 37786689 DOI: 10.1101/2023.09.19.558440  0.31
2023 Rodríguez-Pastor R, Hasik AZ, Knossow N, Bar-Shira E, Shahar N, Gutiérrez R, Zaman L, Harrus S, Lenski RE, Barrick JE, Hawlena H. Bartonella infections are prevalent in rodents despite efficient immune responses. Parasites & Vectors. 16: 315. PMID 37667323 DOI: 10.1186/s13071-023-05918-7  0.725
2023 Barrick JE, Blount ZD, Lake DM, Dwenger JH, Chavarria-Palma JE, Izutsu M, Wiser MJ. Daily Transfers, Archiving Populations, and Measuring Fitness in the Long-Term Evolution Experiment with Escherichia coli. Journal of Visualized Experiments : Jove. PMID 37607082 DOI: 10.3791/65342  0.763
2022 Li Z, Li Y, Xue AZ, Dang V, Renee Holmes V, Spencer Johnston J, Barrick JE, Moran NA. The genomic basis of evolutionary novelties in a leafhopper. Molecular Biology and Evolution. PMID 36026509 DOI: 10.1093/molbev/msac184  0.303
2022 Rodríguez-Pastor R, Shafran Y, Knossow N, Gutiérrez R, Harrus S, Zaman L, Lenski RE, Barrick JE, Hawlena H. A road map for in vivo evolution experiments with blood-borne parasitic microbes. Molecular Ecology Resources. PMID 35599628 DOI: 10.1111/1755-0998.13649  0.726
2021 Deatherage DE, Barrick JE. High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing. Cell Systems. PMID 34536379 DOI: 10.1016/j.cels.2021.08.011  0.345
2021 Borin JM, Avrani S, Barrick JE, Petrie KL, Meyer JR. Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34083444 DOI: 10.1073/pnas.2104592118  0.529
2021 Gifford I, Dasgupta A, Barrick JE. Rates of gene conversions between Escherichia coli ribosomal operons. G3 (Bethesda, Md.). 11. PMID 33585862 DOI: 10.1093/g3journal/jkaa002  0.319
2021 Consuegra J, Gaffé J, Lenski RE, Hindré T, Barrick JE, Tenaillon O, Schneider D. Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria. Nature Communications. 12: 980. PMID 33579917 DOI: 10.1038/s41467-021-21210-7  0.711
2021 Bazurto JV, Riazi S, D'Alton S, Deatherage DE, Bruger EL, Barrick JE, Marx CJ. Global Transcriptional Response of to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition. Microorganisms. 9. PMID 33578755 DOI: 10.3390/microorganisms9020347  0.529
2021 Card KJ, Thomas MD, Graves JL, Barrick JE, Lenski RE. Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33441451 DOI: 10.1073/pnas.2016886118  0.805
2020 Sher AA, Jerome JP, Bell JA, Yu J, Kim HY, Barrick JE, Mansfield LS. Experimental Evolution of Leads to Loss of Motility, N (σ54) Deletion and Genome Reduction. Frontiers in Microbiology. 11: 579989. PMID 33240235 DOI: 10.3389/fmicb.2020.579989  0.367
2020 Blount ZD, Maddamsetti R, Grant NA, Ahmed ST, Jagdish T, Baxter JA, Sommerfeld BA, Tillman A, Moore J, Slonczewski JL, Barrick JE, Lenski RE. Genomic and phenotypic evolution of in a novel citrate-only resource environment. Elife. 9. PMID 32469311 DOI: 10.7554/Elife.55414  0.785
2020 Suárez GA, Dugan KR, Renda BA, Leonard SP, Gangavarapu LS, Barrick JE. Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining. Nucleic Acids Research. PMID 32232367 DOI: 10.1093/Nar/Gkaa204  0.362
2020 Leonard SP, Powell JE, Perutka J, Geng P, Heckmann LC, Horak RD, Davies BW, Ellington AD, Barrick JE, Moran NA. Engineered symbionts activate honey bee immunity and limit pathogens. Science (New York, N.Y.). 367: 573-576. PMID 32001655 DOI: 10.1126/Science.Aax9039  0.352
2020 Blount ZD, Maddamsetti R, Grant NA, Ahmed ST, Jagdish T, Baxter JA, Sommerfeld BA, Tillman A, Moore J, Slonczewski JL, Barrick JE, Lenski RE. Author response: Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment Elife. DOI: 10.7554/Elife.55414.Sa2  0.762
2019 Zhang X, Deatherage DE, Zheng H, Georgoulis SJ, Barrick JE. Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria. Nature Communications. 10: 5809. PMID 31863068 DOI: 10.1038/S41467-019-13709-X  0.395
2019 Geng P, Leonard SP, Mishler DM, Barrick JE. Synthetic genome defenses against selfish DNA elements stabilize engineered bacteria against evolutionary failure. Acs Synthetic Biology. PMID 30703321 DOI: 10.1021/Acssynbio.8B00426  0.4
2018 Deatherage DE, Leon D, Rodriguez ÁE, Omar SK, Barrick JE. Directed evolution of Escherichia coli with lower-than-natural plasmid mutation rates. Nucleic Acids Research. PMID 30137492 DOI: 10.1093/Nar/Gky751  0.454
2018 Leon D, D'Alton S, Quandt EM, Barrick JE. Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides. Plos Genetics. 14: e1007348. PMID 29649242 DOI: 10.1371/Journal.Pgen.1007348  0.484
2018 Leonard SP, Perutka J, Powell JE, Geng P, Richhart D, Byrom M, Kar S, Davies BW, Ellington AD, Moran N, Barrick JE. Genetic engineering of bee gut microbiome bacteria with a toolkit for modular assembly of broad-host-range plasmids. Acs Synthetic Biology. PMID 29608282 DOI: 10.1021/Acssynbio.7B00399  0.339
2017 Good BH, McDonald MJ, Barrick JE, Lenski RE, Desai MM. The dynamics of molecular evolution over 60,000 generations. Nature. PMID 29045390 DOI: 10.1038/Nature24287  0.718
2017 Suárez GA, Renda BA, Dasgupta A, Barrick JE. Reduced mutation rate and increased transformability of transposon-free Acinetobacter baylyi ADP1-ISx. Applied and Environmental Microbiology. PMID 28667117 DOI: 10.1128/Aem.01025-17  0.432
2017 Caglar MU, Houser JR, Barnhart CS, Boutz DR, Carroll SM, Dasgupta A, Lenoir WF, Smith BL, Sridhara V, Sydykova DK, Vander Wood D, Marx CJ, Marcotte EM, Barrick JE, Wilke CO. The E. coli molecular phenotype under different growth conditions. Scientific Reports. 7: 45303. PMID 28417974 DOI: 10.1038/Srep45303  0.601
2017 Brown CW, Sridhara V, Boutz DR, Person MD, Marcotte EM, Barrick JE, Wilke CO. Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions. Bmc Genomics. 18: 301. PMID 28412930 DOI: 10.1186/S12864-017-3676-8  0.323
2017 Deatherage DE, Kepner JL, Bennett AF, Lenski RE, Barrick JE. Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28202733 DOI: 10.1073/Pnas.1616132114  0.722
2016 Monk JW, Leonard SP, Brown CW, Hammerling MJ, Mortensen C, Gutierrez AE, Shin NY, Watkins E, Mishler DM, Barrick JE. Rapid and inexpensive evaluation of nonstandard amino acid incorporation in Escherichia coli. Acs Synthetic Biology. PMID 27648665 DOI: 10.1021/Acssynbio.6B00192  0.331
2016 Renda BA, Chan C, Parent KN, Barrick JE. Emergence of a competence reducing filamentous phage from the genome of Acinetobacter baylyi ADP1. Journal of Bacteriology. PMID 27645387 DOI: 10.1128/Jb.00424-16  0.42
2016 Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, Wu GC, Wielgoss S, Cruveiller S, Médigue C, Schneider D, Lenski RE. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature. PMID 27479321 DOI: 10.1038/Nature18959  0.806
2016 Hammerling MJ, Gollihar J, Mortensen C, Alnahhas RN, Ellington AD, Barrick JE. Expanded genetic codes create new mutational routes to rifampicin resistance in Escherichia coli. Molecular Biology and Evolution. PMID 27189550 DOI: 10.1093/Molbev/Msw094  0.43
2015 Quandt EM, Gollihar J, Blount ZD, Ellington AD, Georgiou G, Barrick JE. Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment. Elife. 4. PMID 26465114 DOI: 10.7554/Elife.09696  0.809
2015 Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO. Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation. Plos Computational Biology. 11: e1004400. PMID 26275208 DOI: 10.1371/Journal.Pcbi.1004400  0.622
2015 Maddamsetti R, Hatcher PJ, Cruveiller S, Médigue C, Barrick JE, Lenski RE. Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment. Molecular Biology and Evolution. 32: 2897-904. PMID 26199375 DOI: 10.1093/Molbev/Msv161  0.824
2015 Perry EB, Barrick JE, Bohannan BJ. The Molecular and Genetic Basis of Repeatable Coevolution between Escherichia coli and Bacteriophage T3 in a Laboratory Microcosm. Plos One. 10: e0130639. PMID 26114300 DOI: 10.1371/Journal.Pone.0130639  0.671
2015 Jack BR, Leonard SP, Mishler DM, Renda BA, Leon D, Suárez GA, Barrick JE. Predicting the genetic stability of engineered DNA sequences with the EFM Calculator. Acs Synthetic Biology. PMID 26096262 DOI: 10.1021/Acssynbio.5B00068  0.379
2015 Quandt EM, Summers RM, Subramanian MV, Barrick JE. Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source. Genome Announcements. 3. PMID 26067973 DOI: 10.1128/Genomea.00640-15  0.347
2015 Maddamsetti R, Lenski RE, Barrick JE. Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli. Genetics. 200: 619-31. PMID 25911659 DOI: 10.1534/Genetics.115.176677  0.819
2015 Graves JL, Tajkarimi M, Cunningham Q, Campbell A, Nonga H, Harrison SH, Barrick JE. Rapid evolution of silver nanoparticle resistance in Escherichia coli. Frontiers in Genetics. 6: 42. PMID 25741363 DOI: 10.3389/Fgene.2015.00042  0.311
2015 Renda BA, Dasgupta A, Leon D, Barrick JE. Genome instability mediates the loss of key traits by Acinetobacter baylyi ADP1 during laboratory evolution. Journal of Bacteriology. 197: 872-81. PMID 25512307 DOI: 10.1128/Jb.02263-14  0.451
2015 Quandt EM, Gollihar J, Blount ZD, Ellington AD, Georgiou G, Barrick JE. Author response: Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment Elife. DOI: 10.7554/Elife.09696.017  0.764
2015 Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO. Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004400  0.501
2015 Tajkarimi MM, Hung AM, Harrison SH, Barrick JE, Graves JL. Single Cell Force Spectroscopy Analysis for Acinetobacter Baylyi Mutation Aggregation Biophysical Journal. 108: 402a-403a. DOI: 10.1016/J.Bpj.2014.11.2207  0.336
2014 Deatherage DE, Traverse CC, Wolf LN, Barrick JE. Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq. Frontiers in Genetics. 5: 468. PMID 25653667 DOI: 10.3389/Fgene.2014.00468  0.502
2014 Barrick JE, Colburn G, Deatherage DE, Traverse CC, Strand MD, Borges JJ, Knoester DB, Reba A, Meyer AG. Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq. Bmc Genomics. 15: 1039. PMID 25432719 DOI: 10.1186/1471-2164-15-1039  0.425
2014 Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. Mbio. 5: e01377-14. PMID 25205090 DOI: 10.1128/Mbio.01377-14  0.717
2014 Deatherage DE, Barrick JE. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods in Molecular Biology (Clifton, N.J.). 1151: 165-88. PMID 24838886 DOI: 10.1007/978-1-4939-0554-6_12  0.462
2014 Renda BA, Hammerling MJ, Barrick JE. Engineering reduced evolutionary potential for synthetic biology. Molecular Biosystems. 10: 1668-78. PMID 24556867 DOI: 10.1039/C3Mb70606K  0.351
2014 Hammerling MJ, Ellefson JW, Boutz DR, Marcotte EM, Ellington AD, Barrick JE. Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness. Nature Chemical Biology. 10: 178-80. PMID 24487692 DOI: 10.1038/Nchembio.1450  0.351
2014 Quandt EM, Deatherage DE, Ellington AD, Georgiou G, Barrick JE. Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 111: 2217-22. PMID 24379390 DOI: 10.1073/Pnas.1314561111  0.476
2013 Barrick JE, Lenski RE. Genome dynamics during experimental evolution. Nature Reviews. Genetics. 14: 827-39. PMID 24166031 DOI: 10.1038/Nrg3564  0.72
2013 Han P, Niestemski LR, Barrick JE, Deem MW. Physical model of the immune response of bacteria against bacteriophage through the adaptive CRISPR-Cas immune system. Physical Biology. 10: 025004. PMID 23492852 DOI: 10.1088/1478-3975/10/2/025004  0.394
2013 Wielgoss S, Barrick JE, Tenaillon O, Wiser MJ, Dittmar WJ, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proceedings of the National Academy of Sciences of the United States of America. 110: 222-7. PMID 23248287 DOI: 10.1073/Pnas.1219574110  0.787
2012 Blount ZD, Barrick JE, Davidson CJ, Lenski RE. Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature. 489: 513-8. PMID 22992527 DOI: 10.1038/Nature11514  0.815
2012 Meyer JR, Dobias DT, Weitz JS, Barrick JE, Quick RT, Lenski RE. Repeatability and contingency in the evolution of a key innovation in phage lambda. Science (New York, N.Y.). 335: 428-32. PMID 22282803 DOI: 10.1126/Science.1214449  0.761
2012 Reba A, Meyer AG, Barrick JE. Computational tests of a thermal cycling strategy to isolate more complex functional nucleic acid motifs from random sequence pools by in vitro selection Artificial Life 13: Proceedings of the 13th International Conference On the Simulation and Synthesis of Living Systems, Alife 2012. 473-480. DOI: 10.7551/978-0-262-31050-5-Ch062  0.357
2012 Wolf LN, Barrick JE. Tracking winners and losers in E. coli evolution experiments Microbe. 7: 124-128. DOI: 10.1128/Microbe.7.124.1  0.419
2011 Wielgoss S, Barrick JE, Tenaillon O, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli. G3 (Bethesda, Md.). 1: 183-186. PMID 22207905 DOI: 10.1534/G3.111.000406  0.807
2011 Nahku R, Peebo K, Valgepea K, Barrick JE, Adamberg K, Vilu R. Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology (Reading, England). 157: 2604-10. PMID 21700661 DOI: 10.1099/Mic.0.050658-0  0.387
2011 Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. Second-order selection for evolvability in a large Escherichia coli population. Science (New York, N.Y.). 331: 1433-6. PMID 21415350 DOI: 10.1126/Science.1198914  0.824
2011 Jerome JP, Bell JA, Plovanich-Jones AE, Barrick JE, Brown CT, Mansfield LS. Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host. Plos One. 6: e16399. PMID 21283682 DOI: 10.1371/Journal.Pone.0016399  0.433
2010 Barrick JE, Kauth MR, Strelioff CC, Lenski RE. Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects. Molecular Biology and Evolution. 27: 1338-47. PMID 20106907 DOI: 10.1093/Molbev/Msq024  0.809
2009 Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature. 461: 1243-7. PMID 19838166 DOI: 10.1038/Nature08480  0.735
2009 Barrick JE, Lenski RE. Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harbor Symposia On Quantitative Biology. 74: 119-29. PMID 19776167 DOI: 10.1101/Sqb.2009.74.018  0.747
2009 Barrick JE. Predicting riboswitch regulation on a genomic scale. Methods in Molecular Biology (Clifton, N.J.). 540: 1-13. PMID 19381548 DOI: 10.1007/978-1-59745-558-9_1  0.415
2008 Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches. Rna (New York, N.Y.). 14: 822-8. PMID 18369181 DOI: 10.1261/Rna.988608  0.793
2008 Regulski EE, Moy RH, Weinberg Z, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism. Molecular Microbiology. 68: 918-32. PMID 18363797 DOI: 10.1111/J.1365-2958.2008.06208.X  0.809
2007 Barrick JE, Breaker RR. The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biology. 8: R239. PMID 17997835 DOI: 10.1186/Gb-2007-8-11-R239  0.639
2007 Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR. Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Research. 35: 4809-19. PMID 17621584 DOI: 10.1093/Nar/Gkm487  0.807
2007 Yao Z, Barrick J, Weinberg Z, Neph S, Breaker R, Tompa M, Ruzzo WL. A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes. Plos Computational Biology. 3: e126. PMID 17616982 DOI: 10.1371/Journal.Pcbi.0030126  0.583
2007 Roth A, Winkler WC, Regulski EE, Lee BW, Lim J, Jona I, Barrick JE, Ritwik A, Kim JN, Welz R, Iwata-Reuyl D, Breaker RR. A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nature Structural & Molecular Biology. 14: 308-17. PMID 17384645 DOI: 10.1038/Nsmb1224  0.792
2007 Barrick JE, Breaker RR. The power of riboswitches. Scientific American. 296: 50-7. PMID 17186833 DOI: 10.1038/Scientificamerican0107-50  0.591
2007 Yao Z, Barrick J, Weinberg Z, Neph S, Breaker R, Tompa M, Ruzzo WL. A computational pipeline for high-throughput discovery of cis-regulatory noncoding RNA in prokaryotes Plos Computational Biology. 3: 1212-1223. DOI: 10.1371/journal.pcbi.0030126  0.489
2006 Lenski RE, Barrick JE, Ofria C. Balancing robustness and evolvability. Plos Biology. 4: e428. PMID 17238277 DOI: 10.1371/Journal.Pbio.0040428  0.764
2006 Puerta-Fernandez E, Barrick JE, Roth A, Breaker RR. Identification of a large noncoding RNA in extremophilic eubacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 19490-5. PMID 17164334 DOI: 10.1073/Pnas.0607493103  0.59
2006 Sudarsan N, Hammond MC, Block KF, Welz R, Barrick JE, Roth A, Breaker RR. Tandem riboswitch architectures exhibit complex gene control functions. Science (New York, N.Y.). 314: 300-4. PMID 17038623 DOI: 10.1126/Science.1130716  0.802
2005 Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, Puskarz I, Mandal M, Rudnick ND, Breaker RR. Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria. Genome Biology. 6: R70. PMID 16086852 DOI: 10.1186/Gb-2005-6-8-R70  0.807
2005 Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR. 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. Rna (New York, N.Y.). 11: 774-84. PMID 15811922 DOI: 10.1261/Rna.7286705  0.594
2004 Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, Ruzzo WL, Breaker RR. A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science (New York, N.Y.). 306: 275-9. PMID 15472076 DOI: 10.1126/Science.1100829  0.797
2004 Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proceedings of the National Academy of Sciences of the United States of America. 101: 6421-6. PMID 15096624 DOI: 10.1073/Pnas.0308014101  0.808
2004 Nahvi A, Barrick JE, Breaker RR. Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes. Nucleic Acids Research. 32: 143-50. PMID 14704351 DOI: 10.1093/Nar/Gkh167  0.779
2003 Barrick JE, Roberts RW. Achieving specificity in selected and wild-type N peptide-RNA complexes: the importance of discrimination against noncognate RNA targets. Biochemistry. 42: 12998-3007. PMID 14596615 DOI: 10.1021/Bi035163P  0.522
2003 Winkler WC, Nahvi A, Sudarsan N, Barrick JE, Breaker RR. An mRNA structure that controls gene expression by binding S-adenosylmethionine. Nature Structural Biology. 10: 701-7. PMID 12910260 DOI: 10.1038/Nsb967  0.817
2003 Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR. Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell. 113: 577-86. PMID 12787499 DOI: 10.1016/S0092-8674(03)00391-X  0.778
2003 Sudarsan N, Barrick JE, Breaker RR. Metabolite-binding RNA domains are present in the genes of eukaryotes. Rna (New York, N.Y.). 9: 644-7. PMID 12756322 DOI: 10.1261/Rna.5090103  0.607
2002 Barrick JE, Roberts RW. Sequence analysis of an artificial family of RNA-binding peptides. Protein Science : a Publication of the Protein Society. 11: 2688-96. PMID 12381850 DOI: 10.1110/Ps.0208902  0.55
2001 Barrick JE, Takahashi TT, Ren J, Xia T, Roberts RW. Large libraries reveal diverse solutions to an RNA recognition problem. Proceedings of the National Academy of Sciences of the United States of America. 98: 12374-8. PMID 11675487 DOI: 10.1073/Pnas.221467798  0.553
2001 Barrick JE, Takahashi TT, Balakin A, Roberts RW. Selection of RNA-binding peptides using mRNA-peptide fusions. Methods (San Diego, Calif.). 23: 287-93. PMID 11243841 DOI: 10.1006/Meth.2000.1139  0.538
2000 Liu R, Barrick JE, Szostak JW, Roberts RW. Optimized synthesis of RNA-protein fusions for in vitro protein selection. Methods in Enzymology. 318: 268-93. PMID 10889994 DOI: 10.1016/S0076-6879(00)18058-9  0.522
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