| Year |
Citation |
Score |
| 2017 |
Trachman RJ, Draper DE. Divalent ion competition reveals reorganization of an RNA ion atmosphere upon folding. Nucleic Acids Research. PMID 28115628 DOI: 10.1093/Nar/Gkw1327 |
0.617 |
|
| 2017 |
Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Draper DE, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography Acta Crystallographica Section a Foundations and Advances. 73: a92-a92. DOI: 10.1107/S0108767317099081 |
0.397 |
|
| 2016 |
Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Draper DE, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature. PMID 27841871 DOI: 10.1038/Nature20599 |
0.375 |
|
| 2015 |
Draper DE. Reflections on 20 years of RNA. Rna (New York, N.Y.). 21: 601-2. PMID 25780156 DOI: 10.1261/Rna.050930.115 |
0.636 |
|
| 2013 |
Trachman RJ, Draper DE. Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds. Biochemistry. 52: 5911-9. PMID 23899366 DOI: 10.1021/Bi400529Q |
0.64 |
|
| 2013 |
Draper DE. Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water. Biopolymers. 99: 1105-13. PMID 23568785 DOI: 10.1002/Bip.22249 |
0.518 |
|
| 2013 |
Trachman RJ, Draper DE. RNA Folding Landscapes in the Presence of Putrescine and Magnesium Biophysical Journal. 104: 411a. DOI: 10.1016/J.Bpj.2012.11.2293 |
0.641 |
|
| 2012 |
Lambert D, Draper DE. Denaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values. Biochemistry. 51: 9014-26. PMID 23088364 DOI: 10.1021/Bi301103J |
0.588 |
|
| 2011 |
Leipply D, Draper DE. Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure. Journal of the American Chemical Society. 133: 13397-405. PMID 21776997 DOI: 10.1021/Ja2020923 |
0.856 |
|
| 2011 |
Leipply D, Draper DE. Effects of Mg2+ on the free energy landscape for folding a purine riboswitch RNA. Biochemistry. 50: 2790-9. PMID 21361309 DOI: 10.1021/Bi101948K |
0.858 |
|
| 2010 |
Lambert D, Leipply D, Draper DE. The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration. Journal of Molecular Biology. 404: 138-57. PMID 20875423 DOI: 10.1016/J.Jmb.2010.09.043 |
0.867 |
|
| 2010 |
Leipply D, Draper DE. Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient. Biochemistry. 49: 1843-53. PMID 20112919 DOI: 10.1021/Bi902036J |
0.862 |
|
| 2009 |
Leipply D, Lambert D, Draper DE. Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria. Methods in Enzymology. 469: 433-63. PMID 20946802 DOI: 10.1016/S0076-6879(09)69021-2 |
0.861 |
|
| 2009 |
Chen AA, Draper DE, Pappu RV. Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop. Journal of Molecular Biology. 390: 805-19. PMID 19482035 DOI: 10.1016/J.Jmb.2009.05.071 |
0.548 |
|
| 2009 |
Lambert D, Leipply D, Shiman R, Draper DE. The influence of monovalent cation size on the stability of RNA tertiary structures. Journal of Molecular Biology. 390: 791-804. PMID 19427322 DOI: 10.1016/J.Jmb.2009.04.083 |
0.849 |
|
| 2009 |
Grilley D, Soto AM, Draper DE. Direct quantitation of Mg2+-RNA interactions by use of a fluorescent dye. Methods in Enzymology. 455: 71-94. PMID 19289203 DOI: 10.1016/S0076-6879(08)04203-1 |
0.862 |
|
| 2009 |
Chen AA, Draper DE, Pappu RV. Mechanism Of Monovalent Counterion Specificity In A RNA Kissing Loop Complex Biophysical Journal. 96: 576a. DOI: 10.1016/J.Bpj.2008.12.3008 |
0.51 |
|
| 2008 |
Draper DE. RNA folding: thermodynamic and molecular descriptions of the roles of ions. Biophysical Journal. 95: 5489-95. PMID 18835912 DOI: 10.1529/Biophysj.108.131813 |
0.524 |
|
| 2008 |
Iben JR, Draper DE. Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11. Biochemistry. 47: 2721-31. PMID 18247578 DOI: 10.1021/Bi701838Y |
0.713 |
|
| 2007 |
Grilley D, Misra V, Caliskan G, Draper DE. Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions. Biochemistry. 46: 10266-78. PMID 17705557 DOI: 10.1021/Bi062284R |
0.829 |
|
| 2007 |
Lambert D, Draper DE. Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions. Journal of Molecular Biology. 370: 993-1005. PMID 17555763 DOI: 10.1016/J.Jmb.2007.03.080 |
0.629 |
|
| 2007 |
Soto AM, Misra V, Draper DE. Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions. Biochemistry. 46: 2973-83. PMID 17315982 DOI: 10.1021/Bi0616753 |
0.635 |
|
| 2007 |
Lee D, Walsh JD, Yu P, Markus MA, Choli-Papadopoulou T, Schwieters CD, Krueger S, Draper DE, Wang YX. The structure of free L11 and functional dynamics of L11 in free, L11-rRNA(58 nt) binary and L11-rRNA(58 nt)-thiostrepton ternary complexes. Journal of Molecular Biology. 367: 1007-22. PMID 17292917 DOI: 10.1016/J.Jmb.2007.01.013 |
0.482 |
|
| 2006 |
Grilley D, Soto AM, Draper DE. Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. 103: 14003-8. PMID 16966612 DOI: 10.1073/Pnas.0606409103 |
0.864 |
|
| 2006 |
Maeder C, Conn GL, Draper DE. Optimization of a ribosomal structural domain by natural selection. Biochemistry. 45: 6635-43. PMID 16716074 DOI: 10.1021/Bi052544P |
0.786 |
|
| 2005 |
Maeder C, Draper DE. A small protein unique to bacteria organizes rRNA tertiary structure over an extensive region of the 50 S ribosomal subunit. Journal of Molecular Biology. 354: 436-46. PMID 16246363 DOI: 10.1016/J.Jmb.2005.09.072 |
0.734 |
|
| 2005 |
Bausch SL, Poliakova E, Draper DE. Interactions of the N-terminal domain of ribosomal protein L11 with thiostrepton and rRNA. The Journal of Biological Chemistry. 280: 29956-63. PMID 15972821 DOI: 10.1074/Jbc.M504182200 |
0.772 |
|
| 2005 |
Phelps SS, Joseph S, Draper DE. Non-bridging phosphate oxygen atoms within the tRNA anticodon stem-loop are essential for ribosomal a site binding and translocation Journal of Molecular Biology. 349: 288-301. PMID 15890196 DOI: 10.1016/J.Jmb.2005.03.079 |
0.33 |
|
| 2005 |
Draper DE, Grilley D, Soto AM. Ions and RNA folding. Annual Review of Biophysics and Biomolecular Structure. 34: 221-43. PMID 15869389 DOI: 10.1146/Annurev.Biophys.34.040204.144511 |
0.838 |
|
| 2005 |
Dunstan MS, Guhathakurta D, Draper DE, Conn GL. Coevolution of protein and RNA structures within a highly conserved ribosomal domain. Chemistry & Biology. 12: 201-6. PMID 15734647 DOI: 10.1016/J.Chembiol.2004.11.019 |
0.853 |
|
| 2004 |
Draper DE. A guide to ions and RNA structure. Rna (New York, N.Y.). 10: 335-43. PMID 14970378 DOI: 10.1261/Rna.5205404 |
0.593 |
|
| 2003 |
García-García C, Draper DE. Electrostatic interactions in a peptide--RNA complex. Journal of Molecular Biology. 331: 75-88. PMID 12875837 DOI: 10.1016/S0022-2836(03)00615-6 |
0.789 |
|
| 2003 |
Misra VK, Shiman R, Draper DE. A thermodynamic framework for the magnesium-dependent folding of RNA. Biopolymers. 69: 118-36. PMID 12717727 DOI: 10.1002/Bip.10353 |
0.645 |
|
| 2002 |
Conn GL, Gittis AG, Lattman EE, Misra VK, Draper DE. A compact RNA tertiary structure contains a buried backbone-K+ complex. Journal of Molecular Biology. 318: 963-73. PMID 12054794 DOI: 10.1016/S0022-2836(02)00147-X |
0.777 |
|
| 2002 |
Misra VK, Draper DE. The linkage between magnesium binding and RNA folding. Journal of Molecular Biology. 317: 507-21. PMID 11955006 DOI: 10.1006/Jmbi.2002.5422 |
0.633 |
|
| 2001 |
Draper DE, Bukhman YV, Gluick TC. Thermal methods for the analysis of RNA folding pathways. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.3. PMID 18428829 DOI: 10.1002/0471142700.Nc1103S02 |
0.573 |
|
| 2001 |
Misra VK, Draper DE. A thermodynamic framework for Mg2+ binding to RNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 12456-61. PMID 11675490 DOI: 10.1073/Pnas.221234598 |
0.64 |
|
| 2001 |
Schlax PJ, Xavier KA, Gluick TC, Draper DE. Translational repression of the Escherichia coli alpha operon mRNA: importance of an mRNA conformational switch and a ternary entrapment complex. The Journal of Biological Chemistry. 276: 38494-501. PMID 11504736 DOI: 10.1074/Jbc.M106934200 |
0.456 |
|
| 2001 |
Gerstner RB, Pak Y, Draper DE. Recognition of 16S rRNA by ribosomal protein S4 from Bacillus stearothermophilus. Biochemistry. 40: 7165-73. PMID 11401563 DOI: 10.1021/Bi010026I |
0.837 |
|
| 2000 |
Sayers EW, Gerstner RB, Draper DE, Torchia DA. Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy. Biochemistry. 39: 13602-13. PMID 11063598 DOI: 10.1021/Bi0013391 |
0.828 |
|
| 2000 |
Shiman R, Draper DE. Stabilization of RNA tertiary structure by monovalent cations. Journal of Molecular Biology. 302: 79-91. PMID 10964562 DOI: 10.1006/Jmbi.2000.4031 |
0.621 |
|
| 2000 |
Misra VK, Draper DE. Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model. Journal of Molecular Biology. 299: 813-25. PMID 10835286 DOI: 10.1006/Jmbi.2000.3769 |
0.567 |
|
| 2000 |
Blyn LB, Risen LM, Griffey RH, Draper DE. The RNA-binding domain of ribosomal protein L11 recognizes an rRNA tertiary structure stabilized by both thiostrepton and magnesium ion. Nucleic Acids Research. 28: 1778-84. PMID 10734197 DOI: 10.1093/Nar/28.8.1778 |
0.681 |
|
| 2000 |
GuhaThakurta D, Draper DE. Contributions of basic residues to ribosomal protein L11 recognition of RNA. Journal of Molecular Biology. 295: 569-80. PMID 10623547 DOI: 10.1006/Jmbi.1999.3372 |
0.847 |
|
| 2000 |
Markus M, Gerstner R, Draper D, Torchia D. 1H, 13C, and 15N Chemical Shift Assignments for Ribosomal Protein S4 delta 41 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4577 |
0.772 |
|
| 1999 |
Misra VK, Draper DE. The interpretation of Mg(2+) binding isotherms for nucleic acids using Poisson-Boltzmann theory. Journal of Molecular Biology. 294: 1135-47. PMID 10600372 DOI: 10.1006/Jmbi.1999.3334 |
0.433 |
|
| 1999 |
Draper DE. Themes in RNA-protein recognition. Journal of Molecular Biology. 293: 255-70. PMID 10550207 DOI: 10.1006/Jmbi.1999.2991 |
0.633 |
|
| 1999 |
Markus MA, Gerstner RB, Draper DE, Torchia DA. Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases. Journal of Molecular Biology. 292: 375-87. PMID 10493882 DOI: 10.1006/Jmbi.1999.3061 |
0.824 |
|
| 1999 |
Murthy VL, Srinivasan R, Draper DE, Rose GD. A complete conformational map for RNA. Journal of Molecular Biology. 291: 313-27. PMID 10438623 DOI: 10.1006/Jmbi.1999.2958 |
0.485 |
|
| 1999 |
Conn GL, Draper DE, Lattman EE, Gittis AG. Crystal structure of a conserved ribosomal protein-RNA complex. Science (New York, N.Y.). 284: 1171-4. PMID 10325228 DOI: 10.1126/Science.284.5417.1171 |
0.819 |
|
| 1999 |
GuhaThakurta D, Draper DE. Protein-RNA sequence covariation in a ribosomal protein-rRNA complex. Biochemistry. 38: 3633-40. PMID 10090750 DOI: 10.1021/Bi9826411 |
0.852 |
|
| 1999 |
Draper DE, Reynaldo LP. RNA binding strategies of ribosomal proteins. Nucleic Acids Research. 27: 381-8. PMID 9862955 DOI: 10.1093/Nar/27.2.381 |
0.837 |
|
| 1998 |
Misra VK, Draper DE. On the role of magnesium ions in RNA stability. Biopolymers. 48: 113-35. PMID 10333741 DOI: 10.1002/(Sici)1097-0282(1998)48:2<113::Aid-Bip3>3.0.Co;2-Y |
0.617 |
|
| 1998 |
Draper DE, Misra VK. RNA shows its metal. Nature Structural Biology. 5: 927-30. PMID 9808031 DOI: 10.1038/2901 |
0.606 |
|
| 1998 |
Conn GL, Gutell RR, Draper DE. A functional ribosomal RNA tertiary structure involves a base triple interaction. Biochemistry. 37: 11980-8. PMID 9718323 DOI: 10.1021/Bi980825+ |
0.801 |
|
| 1998 |
Markus MA, Gerstner RB, Draper DE, Torchia DA. The solution structure of ribosomal protein S4 delta41 reveals two subdomains and a positively charged surface that may interact with RNA. The Embo Journal. 17: 4559-71. PMID 9707416 DOI: 10.1093/Emboj/17.16.4559 |
0.865 |
|
| 1998 |
Davies C, Gerstner RB, Draper DE, Ramakrishnan V, White SW. The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif. The Embo Journal. 17: 4545-58. PMID 9707415 DOI: 10.1093/Emboj/17.16.4545 |
0.849 |
|
| 1998 |
Conn GL, Draper DE. RNA structure. Current Opinion in Structural Biology. 8: 278-85. PMID 9666322 DOI: 10.1016/S0959-440X(98)80059-6 |
0.777 |
|
| 1998 |
Draper DE, Gluick TC, Schlax PJ. Pseudoknots, RNA Folding, and Translational Regulation Cold Spring Harbor Monograph Archive. 35: 415-436. DOI: 10.1101/087969509.35.415 |
0.469 |
|
| 1997 |
Gluick TC, Wills NM, Gesteland RF, Draper DE. Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability. Biochemistry. 36: 16173-86. PMID 9405051 DOI: 10.1021/Bi971362V |
0.475 |
|
| 1997 |
Hinck AP, Markus MA, Huang S, Grzesiek S, Kustonovich I, Draper DE, Torchia DA. The RNA binding domain of ribosomal protein L11: three-dimensional structure of the RNA-bound form of the protein and its interaction with 23 S rRNA. Journal of Molecular Biology. 274: 101-13. PMID 9398519 DOI: 10.1006/Jmbi.1997.1379 |
0.65 |
|
| 1997 |
Bukhman YV, Draper DE. Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure. Journal of Molecular Biology. 273: 1020-31. PMID 9367788 DOI: 10.1006/Jmbi.1997.1383 |
0.589 |
|
| 1997 |
Rogers MJ, Bukhman YV, McCutchan TF, Draper DE. Interaction of thiostrepton with an RNA fragment derived from the plastid-encoded ribosomal RNA of the malaria parasite. Rna (New York, N.Y.). 3: 815-20. PMID 9257641 |
0.398 |
|
| 1997 |
Gluick TC, Gerstner RB, Draper DE. Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot. Journal of Molecular Biology. 270: 451-63. PMID 9237910 DOI: 10.1006/Jmbi.1997.1119 |
0.847 |
|
| 1997 |
Sapag A, Draper DE. In vitro evolution used to define a protein recognition site within a large RNA domain. Bioorganic & Medicinal Chemistry. 5: 1097-105. PMID 9222503 DOI: 10.1016/S0968-0896(97)00045-X |
0.551 |
|
| 1997 |
Markus MA, Hinck AP, Huang S, Draper DE, Torchia DA. High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA. Nature Structural Biology. 4: 70-7. PMID 8989327 DOI: 10.1038/Nsb0197-70 |
0.616 |
|
| 1997 |
Xing Y, Guha Thakurta D, Draper DE. The RNA binding domain of ribosomal protein L11 is structurally similar to homeodomains. Nature Structural Biology. 4: 24-7. PMID 8989317 DOI: 10.1038/Nsb0197-24 |
0.569 |
|
| 1996 |
Wang YX, Huang S, Draper DE. Structure of a U.U pair within a conserved ribosomal RNA hairpin. Nucleic Acids Research. 24: 2666-72. PMID 8758993 DOI: 10.1093/Nar/24.14.2666 |
0.483 |
|
| 1996 |
Draper DE. Strategies for RNA folding. Trends in Biochemical Sciences. 21: 145-9. PMID 8701472 DOI: 10.1016/S0968-0004(96)80169-1 |
0.621 |
|
| 1996 |
Xing Y, Draper DE. Cooperative interactions of RNA and thiostrepton antibiotic with two domains of ribosomal protein L11. Biochemistry. 35: 1581-8. PMID 8634289 DOI: 10.1021/Bi952132O |
0.635 |
|
| 1996 |
Huang S, Wang YX, Draper DE. Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs. Journal of Molecular Biology. 258: 308-21. PMID 8627628 DOI: 10.1006/Jmbi.1996.0252 |
0.475 |
|
| 1995 |
Draper DE, Xing Y. Protein recognition of a ribosomal RNA tertiary structure. Nucleic Acids Symposium Series. 5-7. PMID 8643396 |
0.595 |
|
| 1995 |
Gluick TC, Gerstner RB, Draper DE. A conformational switch in a regulated mRNA involves tertiary structure. Nucleic Acids Symposium Series. 200-2. PMID 8643369 |
0.81 |
|
| 1995 |
Draper DE, Gluick TC. Melting studies of RNA unfolding and RNA-ligand interactions. Methods in Enzymology. 259: 281-305. PMID 8538459 DOI: 10.1016/0076-6879(95)59049-8 |
0.61 |
|
| 1995 |
Xing Y, Draper DE. Stabilization of a ribosomal RNA tertiary structure by ribosomal protein L11. Journal of Molecular Biology. 249: 319-31. PMID 7783196 DOI: 10.1006/Jmbi.1995.0299 |
0.656 |
|
| 1995 |
Draper DE. Protein-RNA recognition. Annual Review of Biochemistry. 64: 593-620. PMID 7574494 DOI: 10.1146/Annurev.Bi.64.070195.003113 |
0.643 |
|
| 1995 |
Lu M, Draper DE. On the role of rRNA tertiary structure in recognition of ribosomal protein L11 and thiostrepton. Nucleic Acids Research. 23: 3426-33. PMID 7567452 DOI: 10.1093/Nar/23.17.3426 |
0.657 |
|
| 1995 |
Baker AM, Draper DE. Messenger RNA recognition by fragments of ribosomal protein S4. The Journal of Biological Chemistry. 270: 22939-45. PMID 7559430 DOI: 10.1074/Jbc.270.39.22939 |
0.586 |
|
| 1995 |
Draper DE, Xing Y, Laing LG. Thermodynamics of RNA unfolding: stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion. Journal of Molecular Biology. 249: 231-8. PMID 7540210 DOI: 10.1006/Jmbi.1995.0291 |
0.869 |
|
| 1995 |
Kebbekus P, Draper DE, Hagerman P. Persistence length of RNA. Biochemistry. 34: 4354-7. PMID 7535562 DOI: 10.1021/Bi00013A026 |
0.571 |
|
| 1995 |
Morse SE, Draper DE. Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects. Nucleic Acids Research. 23: 302-6. PMID 7532297 DOI: 10.1093/Nar/23.2.302 |
0.378 |
|
| 1994 |
Laing LG, Gluick TC, Draper DE. Stabilization of RNA structure by Mg ions. Specific and non-specific effects. Journal of Molecular Biology. 237: 577-87. PMID 8158638 DOI: 10.1006/Jmbi.1994.1256 |
0.866 |
|
| 1994 |
Tang RS, Draper DE. Bend and helical twist associated with a symmetric internal loop from 5S ribosomal RNA. Biochemistry. 33: 10089-93. PMID 8060977 DOI: 10.1021/Bi00199A036 |
0.525 |
|
| 1994 |
Lu M, Draper DE. Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA. Journal of Molecular Biology. 244: 572-85. PMID 7527467 DOI: 10.1006/Jmbi.1994.1753 |
0.581 |
|
| 1994 |
Gluick TC, Draper DE. Thermodynamics of folding a pseudoknotted mRNA fragment. Journal of Molecular Biology. 241: 246-62. PMID 7520082 DOI: 10.1006/Jmbi.1994.1493 |
0.587 |
|
| 1994 |
Laing LG, Draper DE. Thermodynamics of RNA folding in a conserved ribosomal RNA domain. Journal of Molecular Biology. 237: 560-76. PMID 7512652 DOI: 10.1006/Jmbi.1994.1255 |
0.854 |
|
| 1994 |
Tang RS, Draper DE. On the use of phasing experiments to measure helical repeat and bulge loop-associated twist in RNA. Nucleic Acids Research. 22: 835-41. PMID 7511222 DOI: 10.1093/Nar/22.5.835 |
0.525 |
|
| 1993 |
Wang YX, Lu M, Draper DE. Specific ammonium ion requirement for functional ribosomal RNA tertiary structure. Biochemistry. 32: 12279-82. PMID 8241113 DOI: 10.1021/Bi00097A002 |
0.648 |
|
| 1993 |
Spedding G, Draper DE. Allosteric mechanism for translational repression in the Escherichia coli alpha operon. Proceedings of the National Academy of Sciences of the United States of America. 90: 4399-403. PMID 7685102 DOI: 10.1073/Pnas.90.10.4399 |
0.413 |
|
| 1993 |
Spedding G, Gluick TC, Draper DE. Ribosome initiation complex formation with the pseudoknotted alpha operon messenger RNA. Journal of Molecular Biology. 229: 609-22. PMID 7679446 DOI: 10.1006/Jmbi.1993.1067 |
0.495 |
|
| 1992 |
Ten Dam E, Pleij K, Draper D. Structural and functional aspects of RNA pseudoknots Biochemistry. 31: 11665-11676. PMID 1280160 DOI: 10.1021/Bi00162A001 |
0.562 |
|
| 1992 |
Gluick TC, Draper DE. Tertiary structure of ribosomal RNA Current Opinion in Structural Biology. 2: 338-344. DOI: 10.1016/0959-440X(92)90223-T |
0.653 |
|
| 1992 |
Draper DE. The RNA-folding problem Accounts of Chemical Research. 25: 201-207. |
0.436 |
|
| 1991 |
Ryan PC, Draper DE. Detection of a key tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA. Proceedings of the National Academy of Sciences of the United States of America. 88: 6308-12. PMID 2068110 |
0.573 |
|
| 1991 |
Ryan PC, Lu M, Draper DE. Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein L11 and the antibiotic thiostrepton. Journal of Molecular Biology. 221: 1257-68. PMID 1942050 DOI: 10.1016/0022-2836(91)90932-V |
0.661 |
|
| 1990 |
Sapag A, Vartikar JV, Draper DE. Dissection of the 16S rRNA binding site for ribosomal protein S4. Biochimica Et Biophysica Acta. 1050: 34-7. PMID 2207164 DOI: 10.1016/0167-4781(90)90137-Q |
0.458 |
|
| 1990 |
Tang CK, Draper DE. Evidence for allosteric coupling between the ribosome and repressor binding sites of a translationally regulated mRNA. Biochemistry. 29: 4434-9. PMID 2112408 DOI: 10.1021/Bi00470A025 |
0.417 |
|
| 1990 |
Tang RS, Draper DE. Bulge loops used to measure the helical twist of RNA in solution. Biochemistry. 29: 5232-7. PMID 1696495 DOI: 10.1021/Bi00474A003 |
0.582 |
|
| 1989 |
Vartikar JV, Draper DE. S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region. Journal of Molecular Biology. 209: 221-34. PMID 2685320 DOI: 10.1016/0022-2836(89)90274-X |
0.557 |
|
| 1989 |
Draper DE. How do proteins recognize specific RNA sites? New clues from autogenously regulated ribosomal proteins. Trends in Biochemical Sciences. 14: 335-8. PMID 2678632 DOI: 10.1016/0968-0004(89)90167-9 |
0.626 |
|
| 1989 |
White SA, Draper DE. Effects of single-base bulges on intercalator binding to small RNA and DNA hairpins and a ribosomal RNA fragment. Biochemistry. 28: 1892-7. PMID 2655698 DOI: 10.1021/Bi00430A069 |
0.738 |
|
| 1989 |
Ryan PC, Draper DE. Thermodynamics of protein-RNA recognition in a highly conserved region of the large-subunit ribosomal RNA. Biochemistry. 28: 9949-56. PMID 2620068 DOI: 10.1021/Bi00452A012 |
0.63 |
|
| 1989 |
Tang CK, Draper DE. Unusual mRNA pseudoknot structure is recognized by a protein translational repressor. Cell. 57: 531-6. PMID 2470510 DOI: 10.1016/0092-8674(89)90123-2 |
0.571 |
|
| 1988 |
Draper DE, White SA, Kean JM. Preparation of specific ribosomal RNA fragments. Methods in Enzymology. 164: 221-37. PMID 3071664 DOI: 10.1016/S0076-6879(88)64045-6 |
0.7 |
|
| 1988 |
Draper DE, Deckman IC, Vartikar JV. Physical studies of ribosomal protein-RNA interactions. Methods in Enzymology. 164: 203-20. PMID 3071663 DOI: 10.1016/S0076-6879(88)64044-4 |
0.6 |
|
| 1987 |
Deckman IC, Draper DE. S4-alpha mRNA translation regulation complex. II. Secondary structures of the RNA regulatory site in the presence and absence of S4. Journal of Molecular Biology. 196: 323-32. PMID 2443720 DOI: 10.1016/0022-2836(87)90693-0 |
0.509 |
|
| 1987 |
Deckman IC, Draper DE, Thomas MS. S4-alpha mRNA translation repression complex. I. Thermodynamics of formation. Journal of Molecular Biology. 196: 313-22. PMID 2443719 DOI: 10.1016/0022-2836(87)90692-9 |
0.465 |
|
| 1987 |
White SA, Draper DE. Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition. Nucleic Acids Research. 15: 4049-64. PMID 2438651 DOI: 10.1093/Nar/15.10.4049 |
0.738 |
|
| 1986 |
Lowman HB, Draper DE. On the recognition of helical RNA by cobra venom V1 nuclease. The Journal of Biological Chemistry. 261: 5396-403. PMID 2420800 |
0.502 |
|
| 1985 |
Draper DE. On the coordination properties of Eu3+ bound to tRNA. Biophysical Chemistry. 21: 91-101. PMID 3978219 DOI: 10.1016/0301-4622(85)85011-0 |
0.383 |
|
| 1985 |
Kean JM, White SA, Draper DE. Detection of high-affinity intercalator sites in a ribosomal RNA fragment by the affinity cleavage intercalator methidiumpropyl-EDTA-iron(II). Biochemistry. 24: 5062-70. PMID 3935157 DOI: 10.1021/Bi00340A016 |
0.73 |
|
| 1985 |
Deckman IC, Draper DE. Specific interaction between ribosomal protein S4 and the alpha operon messenger RNA. Biochemistry. 24: 7860-5. PMID 3912010 DOI: 10.1021/Bi00348A002 |
0.526 |
|
| 1985 |
Kean JM, Draper DE. Secondary structure of a 345-base RNA fragment covering the S8/S15 protein binding domain of Escherichia coli 16S ribosomal RNA. Biochemistry. 24: 5052-61. PMID 3907698 DOI: 10.1021/Bi00340A015 |
0.638 |
|
| 1984 |
Draper DE. Attachment of reporter groups to specific, selected cytidine residues in RNA using a bisulfite-catalyzed transamination reaction. Nucleic Acids Research. 12: 989-1002. PMID 6198634 DOI: 10.1093/Nar/12.2.989 |
0.541 |
|
| 1984 |
Draper DE. Attachment of reporter groups to specific, selected cytidine residues in RNA using a bisulfitecatalyzed transamination reaction Nucleic Acids Research. 12: 989-1002. DOI: 10.1093/nar/12.2.989 |
0.377 |
|
| 1979 |
Draper DE, von Hippel PH. Interaction of Escherichia coli ribosomal protein S1 with ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 76: 1040-4. PMID 375222 |
0.635 |
|
| 1979 |
Draper DE, von Hippel PH. Measurement of macromolecular equilibrium binding constants by a sucrose gradient band sedimentation method. Application to protein-nucleic acid interactions. Biochemistry. 18: 753-60. PMID 369606 DOI: 10.1021/Bi00572A003 |
0.571 |
|
| 1978 |
Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. II. Co-operativity and specificity of binding site II. Journal of Molecular Biology. 122: 339-59. PMID 357732 DOI: 10.1016/0022-2836(78)90194-8 |
0.541 |
|
| 1978 |
Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I. Journal of Molecular Biology. 122: 321-38. PMID 357731 DOI: 10.1016/0022-2836(78)90193-6 |
0.591 |
|
| 1978 |
Draper DE, Von Hippel PH. Determination of co-operativity parameters for nucleic acid binding proteins using oligonucleotides of defined length Journal of Molecular Biology. 122: 355-359. |
0.517 |
|
| 1977 |
Draper DE, Pratt CW, von Hippel PH. Escherichia coli ribosomal protein S1 has two polynucleotide binding sites. Proceedings of the National Academy of Sciences of the United States of America. 74: 4786-90. PMID 337301 |
0.643 |
|
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